Multiple sequence alignment - TraesCS5D01G489100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G489100 chr5D 100.000 6026 0 0 1 6026 524442506 524436481 0.000000e+00 11129.0
1 TraesCS5D01G489100 chr5D 93.636 550 34 1 5478 6026 524338213 524337664 0.000000e+00 821.0
2 TraesCS5D01G489100 chr5A 85.589 4323 359 130 839 5042 650643933 650639756 0.000000e+00 4289.0
3 TraesCS5D01G489100 chr5A 92.683 410 20 5 5075 5476 650639752 650639345 3.130000e-162 582.0
4 TraesCS5D01G489100 chr5A 76.125 289 54 12 257 544 340471532 340471806 2.930000e-28 137.0
5 TraesCS5D01G489100 chr5B 85.605 2744 188 81 721 3339 658919936 658917275 0.000000e+00 2687.0
6 TraesCS5D01G489100 chr5B 91.939 1836 95 17 3342 5141 658917112 658915294 0.000000e+00 2521.0
7 TraesCS5D01G489100 chr5B 93.548 93 4 2 636 727 8536487 8536396 2.930000e-28 137.0
8 TraesCS5D01G489100 chr5B 81.538 130 21 2 257 383 606038019 606038148 2.970000e-18 104.0
9 TraesCS5D01G489100 chr3D 92.029 552 43 1 5476 6026 482481235 482481786 0.000000e+00 774.0
10 TraesCS5D01G489100 chr3D 91.367 556 47 1 5471 6026 122377625 122378179 0.000000e+00 760.0
11 TraesCS5D01G489100 chr3D 91.455 550 47 0 5477 6026 132085660 132086209 0.000000e+00 756.0
12 TraesCS5D01G489100 chr3D 95.506 89 2 2 636 724 579769994 579769908 2.260000e-29 141.0
13 TraesCS5D01G489100 chr7D 92.000 550 44 0 5477 6026 454349923 454349374 0.000000e+00 773.0
14 TraesCS5D01G489100 chr7D 80.142 141 26 2 8 146 421454121 421453981 2.970000e-18 104.0
15 TraesCS5D01G489100 chr2D 92.015 551 42 2 5477 6026 492739979 492739430 0.000000e+00 773.0
16 TraesCS5D01G489100 chr2D 81.081 222 40 2 3 224 521419155 521419374 6.210000e-40 176.0
17 TraesCS5D01G489100 chr2D 75.000 408 64 21 9 385 588117779 588118179 2.910000e-33 154.0
18 TraesCS5D01G489100 chr1D 92.000 550 44 0 5477 6026 202243493 202244042 0.000000e+00 773.0
19 TraesCS5D01G489100 chr1D 78.093 388 56 14 3 361 24624091 24624478 1.020000e-52 219.0
20 TraesCS5D01G489100 chr1D 74.350 577 101 30 3 547 364094336 364093775 1.020000e-47 202.0
21 TraesCS5D01G489100 chr1D 92.308 52 4 0 5190 5241 339289320 339289371 2.330000e-09 75.0
22 TraesCS5D01G489100 chr4D 91.818 550 45 0 5477 6026 293100643 293100094 0.000000e+00 767.0
23 TraesCS5D01G489100 chr4D 91.455 550 47 0 5477 6026 210835857 210836406 0.000000e+00 756.0
24 TraesCS5D01G489100 chr3B 77.750 800 98 38 1089 1844 412905869 412906632 9.340000e-113 418.0
25 TraesCS5D01G489100 chr3B 89.423 104 8 3 619 722 762449747 762449847 1.760000e-25 128.0
26 TraesCS5D01G489100 chr3B 82.203 118 18 2 38 153 696789404 696789520 1.380000e-16 99.0
27 TraesCS5D01G489100 chr2A 77.217 575 95 22 3 547 5293688 5293120 2.730000e-78 303.0
28 TraesCS5D01G489100 chr2A 76.132 574 92 30 8 542 525034695 525034128 5.990000e-65 259.0
29 TraesCS5D01G489100 chr2A 80.451 266 30 16 285 544 755993619 755993868 3.710000e-42 183.0
30 TraesCS5D01G489100 chr2A 93.333 90 4 2 636 725 729131752 729131665 1.360000e-26 132.0
31 TraesCS5D01G489100 chr2A 81.879 149 19 6 5269 5413 126992479 126992623 1.060000e-22 119.0
32 TraesCS5D01G489100 chr3A 75.737 577 100 24 3 547 108383868 108383300 2.790000e-63 254.0
33 TraesCS5D01G489100 chr3A 95.506 89 3 1 636 724 523731361 523731448 2.260000e-29 141.0
34 TraesCS5D01G489100 chr3A 79.279 111 15 7 10 118 24187042 24186938 3.010000e-08 71.3
35 TraesCS5D01G489100 chr7A 75.044 565 98 33 8 541 113623915 113624467 7.860000e-54 222.0
36 TraesCS5D01G489100 chr7A 90.291 103 5 5 617 717 20733027 20732928 4.900000e-26 130.0
37 TraesCS5D01G489100 chr7A 80.142 141 23 5 8 145 511529913 511530051 3.840000e-17 100.0
38 TraesCS5D01G489100 chr4A 81.857 237 37 2 10 246 742547232 742547002 1.710000e-45 195.0
39 TraesCS5D01G489100 chr4A 89.623 106 7 4 613 717 422945090 422945192 1.360000e-26 132.0
40 TraesCS5D01G489100 chr4B 83.333 156 25 1 10 164 72659597 72659442 6.300000e-30 143.0
41 TraesCS5D01G489100 chr4B 90.769 65 4 2 316 379 134390023 134390086 1.080000e-12 86.1
42 TraesCS5D01G489100 chr1A 93.684 95 3 3 623 717 548742998 548743089 8.140000e-29 139.0
43 TraesCS5D01G489100 chr1A 80.822 146 11 10 5281 5413 74018135 74017994 1.380000e-16 99.0
44 TraesCS5D01G489100 chr6B 92.632 95 4 3 623 717 574464724 574464815 3.790000e-27 134.0
45 TraesCS5D01G489100 chr6D 83.065 124 21 0 9 132 302151562 302151439 4.940000e-21 113.0
46 TraesCS5D01G489100 chr6D 79.730 148 18 9 5274 5413 436776595 436776452 4.970000e-16 97.1
47 TraesCS5D01G489100 chr7B 76.132 243 32 16 5189 5413 80073905 80074139 2.970000e-18 104.0
48 TraesCS5D01G489100 chrUn 79.452 146 13 10 5281 5413 355675293 355675152 2.990000e-13 87.9
49 TraesCS5D01G489100 chr1B 92.308 52 4 0 5190 5241 454363530 454363581 2.330000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G489100 chr5D 524436481 524442506 6025 True 11129.0 11129 100.000 1 6026 1 chr5D.!!$R2 6025
1 TraesCS5D01G489100 chr5D 524337664 524338213 549 True 821.0 821 93.636 5478 6026 1 chr5D.!!$R1 548
2 TraesCS5D01G489100 chr5A 650639345 650643933 4588 True 2435.5 4289 89.136 839 5476 2 chr5A.!!$R1 4637
3 TraesCS5D01G489100 chr5B 658915294 658919936 4642 True 2604.0 2687 88.772 721 5141 2 chr5B.!!$R2 4420
4 TraesCS5D01G489100 chr3D 482481235 482481786 551 False 774.0 774 92.029 5476 6026 1 chr3D.!!$F3 550
5 TraesCS5D01G489100 chr3D 122377625 122378179 554 False 760.0 760 91.367 5471 6026 1 chr3D.!!$F1 555
6 TraesCS5D01G489100 chr3D 132085660 132086209 549 False 756.0 756 91.455 5477 6026 1 chr3D.!!$F2 549
7 TraesCS5D01G489100 chr7D 454349374 454349923 549 True 773.0 773 92.000 5477 6026 1 chr7D.!!$R2 549
8 TraesCS5D01G489100 chr2D 492739430 492739979 549 True 773.0 773 92.015 5477 6026 1 chr2D.!!$R1 549
9 TraesCS5D01G489100 chr1D 202243493 202244042 549 False 773.0 773 92.000 5477 6026 1 chr1D.!!$F2 549
10 TraesCS5D01G489100 chr1D 364093775 364094336 561 True 202.0 202 74.350 3 547 1 chr1D.!!$R1 544
11 TraesCS5D01G489100 chr4D 293100094 293100643 549 True 767.0 767 91.818 5477 6026 1 chr4D.!!$R1 549
12 TraesCS5D01G489100 chr4D 210835857 210836406 549 False 756.0 756 91.455 5477 6026 1 chr4D.!!$F1 549
13 TraesCS5D01G489100 chr3B 412905869 412906632 763 False 418.0 418 77.750 1089 1844 1 chr3B.!!$F1 755
14 TraesCS5D01G489100 chr2A 5293120 5293688 568 True 303.0 303 77.217 3 547 1 chr2A.!!$R1 544
15 TraesCS5D01G489100 chr2A 525034128 525034695 567 True 259.0 259 76.132 8 542 1 chr2A.!!$R2 534
16 TraesCS5D01G489100 chr3A 108383300 108383868 568 True 254.0 254 75.737 3 547 1 chr3A.!!$R2 544
17 TraesCS5D01G489100 chr7A 113623915 113624467 552 False 222.0 222 75.044 8 541 1 chr7A.!!$F1 533

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
118 120 0.035317 ACATTGAAGCAGCTGACCGA 59.965 50.0 20.43 5.35 0.00 4.69 F
622 688 0.182537 CGGCATTCCCTCCCATGTAA 59.817 55.0 0.00 0.00 0.00 2.41 F
1523 1727 0.239879 TGCTTTTGGTCGATTTCGCC 59.760 50.0 0.00 1.21 39.60 5.54 F
1865 2111 0.548197 TTGGGGAACGTAGGGGATGT 60.548 55.0 0.00 0.00 0.00 3.06 F
3077 3348 0.537143 ACAGCCACTCAATGCGGAAA 60.537 50.0 0.00 0.00 0.00 3.13 F
3139 3410 1.871080 AGGCGATATGCTTTTCCTCG 58.129 50.0 0.00 0.00 45.43 4.63 F
4352 4806 0.696501 GGGGTTCAGAAGGCCTGTTA 59.303 55.0 5.69 0.00 43.38 2.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2007 2253 0.179045 CATCCTAAGGGACGGCCAAG 60.179 60.0 11.0 2.46 45.43 3.61 R
2074 2320 2.217393 GCTAGCGAAGTCACATCAATCG 59.783 50.0 0.0 0.00 36.64 3.34 R
2697 2968 0.252479 ACTGCCTCTGCCAAGATGAG 59.748 55.0 0.0 0.00 36.33 2.90 R
3139 3410 1.259840 AACCATCAATGCTGCCACCC 61.260 55.0 0.0 0.00 0.00 4.61 R
4202 4656 0.251297 CCCTTGACCATTGAGCCACA 60.251 55.0 0.0 0.00 0.00 4.17 R
4452 4918 1.142688 ACATCCCTTCCTGCCCTGTT 61.143 55.0 0.0 0.00 0.00 3.16 R
5835 6353 0.534203 GGCGGTCTTGGTCTTGTTGA 60.534 55.0 0.0 0.00 0.00 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 1.291877 GCGCTGAATGACACGACCTT 61.292 55.000 0.00 0.00 0.00 3.50
81 83 1.743252 GCAGCTTCCCGAGGAACAG 60.743 63.158 1.68 0.00 36.71 3.16
118 120 0.035317 ACATTGAAGCAGCTGACCGA 59.965 50.000 20.43 5.35 0.00 4.69
124 126 1.192146 AAGCAGCTGACCGACCCTTA 61.192 55.000 20.43 0.00 0.00 2.69
135 137 1.609783 GACCCTTAGCATGGCCTGT 59.390 57.895 3.32 0.00 0.00 4.00
205 226 2.641746 CCTCCTCCCCTCTCCCTGT 61.642 68.421 0.00 0.00 0.00 4.00
224 245 1.065854 GTCCATCTCCCTCCACAACTG 60.066 57.143 0.00 0.00 0.00 3.16
226 247 0.617413 CATCTCCCTCCACAACTGCT 59.383 55.000 0.00 0.00 0.00 4.24
246 269 1.750399 CGATGGGCAAGTTCTGGGG 60.750 63.158 0.00 0.00 0.00 4.96
247 270 2.037847 ATGGGCAAGTTCTGGGGC 59.962 61.111 0.00 0.00 0.00 5.80
248 271 2.786512 GATGGGCAAGTTCTGGGGCA 62.787 60.000 0.00 0.00 0.00 5.36
249 272 2.203625 GGGCAAGTTCTGGGGCAA 60.204 61.111 0.00 0.00 0.00 4.52
251 274 2.653115 GCAAGTTCTGGGGCAAGC 59.347 61.111 0.00 0.00 0.00 4.01
253 276 1.871126 GCAAGTTCTGGGGCAAGCTC 61.871 60.000 0.00 0.00 0.00 4.09
254 277 1.302832 AAGTTCTGGGGCAAGCTCG 60.303 57.895 0.00 0.00 0.00 5.03
271 331 2.743718 GGGGCGGATCGTGATGAT 59.256 61.111 0.00 0.00 41.06 2.45
276 336 1.300156 CGGATCGTGATGATGCCGT 60.300 57.895 13.68 0.00 42.04 5.68
280 340 0.465705 ATCGTGATGATGCCGTCCTT 59.534 50.000 0.00 0.00 35.45 3.36
306 366 2.413765 GAGCCGTCGTCCTCATCC 59.586 66.667 5.55 0.00 0.00 3.51
385 448 4.435436 CGCCGTAGCAGCAGTCCA 62.435 66.667 0.00 0.00 39.83 4.02
391 454 1.969589 TAGCAGCAGTCCACGTCGA 60.970 57.895 0.00 0.00 0.00 4.20
393 456 2.801162 CAGCAGTCCACGTCGACG 60.801 66.667 34.58 34.58 46.33 5.12
407 470 3.001406 GACGGGTGGTGGGCTAGT 61.001 66.667 0.00 0.00 0.00 2.57
410 473 2.355115 GGGTGGTGGGCTAGTTGG 59.645 66.667 0.00 0.00 0.00 3.77
414 477 1.839747 TGGTGGGCTAGTTGGACGT 60.840 57.895 0.00 0.00 0.00 4.34
434 500 2.337170 CCACCGACGCACAGTACA 59.663 61.111 0.00 0.00 0.00 2.90
439 505 1.007336 CCGACGCACAGTACAAGGAC 61.007 60.000 0.00 0.00 0.00 3.85
441 507 1.006571 ACGCACAGTACAAGGACCG 60.007 57.895 0.00 0.00 0.00 4.79
450 516 1.335132 TACAAGGACCGGATGGAGCC 61.335 60.000 9.46 0.00 39.21 4.70
451 517 2.285368 AAGGACCGGATGGAGCCA 60.285 61.111 9.46 0.00 39.21 4.75
483 549 2.338620 CGTGCTCCACCTCAACGA 59.661 61.111 0.00 0.00 0.00 3.85
488 554 2.203523 TCCACCTCAACGACCCGA 60.204 61.111 0.00 0.00 0.00 5.14
492 558 1.529948 ACCTCAACGACCCGACTCA 60.530 57.895 0.00 0.00 0.00 3.41
517 583 1.677552 GGGGACGCTTTTCTCCTCA 59.322 57.895 0.00 0.00 32.66 3.86
550 616 2.974698 CATCCCCTCCGCGCAATC 60.975 66.667 8.75 0.00 0.00 2.67
551 617 3.479203 ATCCCCTCCGCGCAATCA 61.479 61.111 8.75 0.00 0.00 2.57
552 618 3.757248 ATCCCCTCCGCGCAATCAC 62.757 63.158 8.75 0.00 0.00 3.06
554 620 4.812476 CCCTCCGCGCAATCACGA 62.812 66.667 8.75 0.00 34.06 4.35
555 621 3.554692 CCTCCGCGCAATCACGAC 61.555 66.667 8.75 0.00 34.06 4.34
556 622 3.902063 CTCCGCGCAATCACGACG 61.902 66.667 8.75 0.00 34.06 5.12
557 623 4.710695 TCCGCGCAATCACGACGT 62.711 61.111 8.75 0.00 33.08 4.34
558 624 4.191485 CCGCGCAATCACGACGTC 62.191 66.667 8.75 5.18 33.08 4.34
559 625 4.191485 CGCGCAATCACGACGTCC 62.191 66.667 10.58 0.00 34.06 4.79
560 626 3.109547 GCGCAATCACGACGTCCA 61.110 61.111 10.58 0.00 34.06 4.02
561 627 2.663478 GCGCAATCACGACGTCCAA 61.663 57.895 10.58 0.00 34.06 3.53
562 628 1.856688 CGCAATCACGACGTCCAAA 59.143 52.632 10.58 0.00 34.06 3.28
563 629 0.442310 CGCAATCACGACGTCCAAAT 59.558 50.000 10.58 0.00 34.06 2.32
564 630 1.526986 CGCAATCACGACGTCCAAATC 60.527 52.381 10.58 0.00 34.06 2.17
565 631 1.526986 GCAATCACGACGTCCAAATCG 60.527 52.381 10.58 0.00 43.97 3.34
566 632 1.060553 CAATCACGACGTCCAAATCGG 59.939 52.381 10.58 0.00 42.67 4.18
567 633 0.528924 ATCACGACGTCCAAATCGGA 59.471 50.000 10.58 0.00 42.67 4.55
574 640 4.855105 TCCAAATCGGATGCCTCG 57.145 55.556 0.00 0.00 39.64 4.63
575 641 1.904771 TCCAAATCGGATGCCTCGT 59.095 52.632 0.00 0.00 39.64 4.18
576 642 0.461870 TCCAAATCGGATGCCTCGTG 60.462 55.000 0.00 0.00 39.64 4.35
577 643 0.461870 CCAAATCGGATGCCTCGTGA 60.462 55.000 0.00 0.00 36.56 4.35
578 644 1.368641 CAAATCGGATGCCTCGTGAA 58.631 50.000 0.00 0.00 0.00 3.18
579 645 1.328680 CAAATCGGATGCCTCGTGAAG 59.671 52.381 0.00 0.00 0.00 3.02
580 646 0.824109 AATCGGATGCCTCGTGAAGA 59.176 50.000 0.00 0.00 0.00 2.87
581 647 0.824109 ATCGGATGCCTCGTGAAGAA 59.176 50.000 0.00 0.00 0.00 2.52
582 648 0.606096 TCGGATGCCTCGTGAAGAAA 59.394 50.000 0.00 0.00 0.00 2.52
583 649 1.002366 CGGATGCCTCGTGAAGAAAG 58.998 55.000 0.00 0.00 0.00 2.62
584 650 1.373570 GGATGCCTCGTGAAGAAAGG 58.626 55.000 0.00 0.00 0.00 3.11
587 653 4.303257 CCTCGTGAAGAAAGGCCC 57.697 61.111 0.00 0.00 0.00 5.80
588 654 1.679898 CCTCGTGAAGAAAGGCCCT 59.320 57.895 0.00 0.00 0.00 5.19
589 655 0.674895 CCTCGTGAAGAAAGGCCCTG 60.675 60.000 0.00 0.00 0.00 4.45
590 656 1.301677 CTCGTGAAGAAAGGCCCTGC 61.302 60.000 0.00 0.00 0.00 4.85
591 657 1.302832 CGTGAAGAAAGGCCCTGCT 60.303 57.895 0.00 0.00 0.00 4.24
592 658 1.301677 CGTGAAGAAAGGCCCTGCTC 61.302 60.000 0.00 0.00 0.00 4.26
593 659 0.962855 GTGAAGAAAGGCCCTGCTCC 60.963 60.000 0.00 0.00 0.00 4.70
594 660 1.746991 GAAGAAAGGCCCTGCTCCG 60.747 63.158 0.00 0.00 0.00 4.63
595 661 2.470938 GAAGAAAGGCCCTGCTCCGT 62.471 60.000 0.00 0.00 0.00 4.69
596 662 2.747855 GAAAGGCCCTGCTCCGTG 60.748 66.667 0.00 0.00 0.00 4.94
597 663 3.553095 GAAAGGCCCTGCTCCGTGT 62.553 63.158 0.00 0.00 0.00 4.49
598 664 2.180159 GAAAGGCCCTGCTCCGTGTA 62.180 60.000 0.00 0.00 0.00 2.90
599 665 1.562672 AAAGGCCCTGCTCCGTGTAT 61.563 55.000 0.00 0.00 0.00 2.29
600 666 2.203070 GGCCCTGCTCCGTGTATG 60.203 66.667 0.00 0.00 0.00 2.39
601 667 2.584608 GCCCTGCTCCGTGTATGT 59.415 61.111 0.00 0.00 0.00 2.29
602 668 1.078426 GCCCTGCTCCGTGTATGTT 60.078 57.895 0.00 0.00 0.00 2.71
603 669 1.090052 GCCCTGCTCCGTGTATGTTC 61.090 60.000 0.00 0.00 0.00 3.18
604 670 0.806102 CCCTGCTCCGTGTATGTTCG 60.806 60.000 0.00 0.00 0.00 3.95
605 671 0.806102 CCTGCTCCGTGTATGTTCGG 60.806 60.000 0.00 0.00 46.93 4.30
606 672 1.421410 CTGCTCCGTGTATGTTCGGC 61.421 60.000 0.00 0.00 45.44 5.54
607 673 1.447140 GCTCCGTGTATGTTCGGCA 60.447 57.895 0.00 0.00 45.44 5.69
608 674 0.810031 GCTCCGTGTATGTTCGGCAT 60.810 55.000 0.00 0.00 45.44 4.40
609 675 1.651987 CTCCGTGTATGTTCGGCATT 58.348 50.000 0.00 0.00 45.44 3.56
610 676 1.593006 CTCCGTGTATGTTCGGCATTC 59.407 52.381 0.00 0.00 45.44 2.67
611 677 0.655733 CCGTGTATGTTCGGCATTCC 59.344 55.000 0.00 0.00 40.28 3.01
612 678 0.655733 CGTGTATGTTCGGCATTCCC 59.344 55.000 0.00 0.00 38.94 3.97
613 679 1.742411 CGTGTATGTTCGGCATTCCCT 60.742 52.381 0.00 0.00 38.94 4.20
614 680 1.940613 GTGTATGTTCGGCATTCCCTC 59.059 52.381 0.00 0.00 38.94 4.30
615 681 1.134220 TGTATGTTCGGCATTCCCTCC 60.134 52.381 0.00 0.00 38.94 4.30
616 682 0.472471 TATGTTCGGCATTCCCTCCC 59.528 55.000 0.00 0.00 38.94 4.30
617 683 1.570857 ATGTTCGGCATTCCCTCCCA 61.571 55.000 0.00 0.00 33.14 4.37
618 684 1.227383 GTTCGGCATTCCCTCCCAT 59.773 57.895 0.00 0.00 0.00 4.00
619 685 1.103398 GTTCGGCATTCCCTCCCATG 61.103 60.000 0.00 0.00 0.00 3.66
620 686 1.570857 TTCGGCATTCCCTCCCATGT 61.571 55.000 0.00 0.00 0.00 3.21
621 687 0.692756 TCGGCATTCCCTCCCATGTA 60.693 55.000 0.00 0.00 0.00 2.29
622 688 0.182537 CGGCATTCCCTCCCATGTAA 59.817 55.000 0.00 0.00 0.00 2.41
623 689 1.409521 CGGCATTCCCTCCCATGTAAA 60.410 52.381 0.00 0.00 0.00 2.01
624 690 2.745968 GGCATTCCCTCCCATGTAAAA 58.254 47.619 0.00 0.00 0.00 1.52
625 691 2.430694 GGCATTCCCTCCCATGTAAAAC 59.569 50.000 0.00 0.00 0.00 2.43
626 692 3.096092 GCATTCCCTCCCATGTAAAACA 58.904 45.455 0.00 0.00 0.00 2.83
627 693 3.513515 GCATTCCCTCCCATGTAAAACAA 59.486 43.478 0.00 0.00 0.00 2.83
628 694 4.381932 GCATTCCCTCCCATGTAAAACAAG 60.382 45.833 0.00 0.00 0.00 3.16
629 695 4.463050 TTCCCTCCCATGTAAAACAAGT 57.537 40.909 0.00 0.00 0.00 3.16
630 696 3.761897 TCCCTCCCATGTAAAACAAGTG 58.238 45.455 0.00 0.00 0.00 3.16
631 697 2.231235 CCCTCCCATGTAAAACAAGTGC 59.769 50.000 0.00 0.00 0.00 4.40
632 698 2.095263 CCTCCCATGTAAAACAAGTGCG 60.095 50.000 0.00 0.00 0.00 5.34
633 699 2.552315 CTCCCATGTAAAACAAGTGCGT 59.448 45.455 0.00 0.00 0.00 5.24
634 700 3.741249 TCCCATGTAAAACAAGTGCGTA 58.259 40.909 0.00 0.00 0.00 4.42
635 701 3.499157 TCCCATGTAAAACAAGTGCGTAC 59.501 43.478 0.00 0.00 0.00 3.67
636 702 3.365565 CCCATGTAAAACAAGTGCGTACC 60.366 47.826 0.00 0.00 0.00 3.34
637 703 3.365565 CCATGTAAAACAAGTGCGTACCC 60.366 47.826 0.00 0.00 0.00 3.69
638 704 3.196939 TGTAAAACAAGTGCGTACCCT 57.803 42.857 0.00 0.00 0.00 4.34
639 705 3.132925 TGTAAAACAAGTGCGTACCCTC 58.867 45.455 0.00 0.00 0.00 4.30
640 706 1.223187 AAAACAAGTGCGTACCCTCG 58.777 50.000 0.00 0.00 0.00 4.63
641 707 0.601841 AAACAAGTGCGTACCCTCGG 60.602 55.000 0.00 0.00 0.00 4.63
642 708 1.751349 AACAAGTGCGTACCCTCGGT 61.751 55.000 0.00 0.00 40.16 4.69
643 709 0.895100 ACAAGTGCGTACCCTCGGTA 60.895 55.000 0.00 0.00 37.09 4.02
644 710 0.244450 CAAGTGCGTACCCTCGGTAA 59.756 55.000 0.00 0.00 40.12 2.85
645 711 0.968405 AAGTGCGTACCCTCGGTAAA 59.032 50.000 0.00 0.00 40.12 2.01
646 712 0.244721 AGTGCGTACCCTCGGTAAAC 59.755 55.000 0.00 0.00 40.12 2.01
647 713 0.244721 GTGCGTACCCTCGGTAAACT 59.755 55.000 0.00 0.00 40.12 2.66
648 714 1.472480 GTGCGTACCCTCGGTAAACTA 59.528 52.381 0.00 0.00 40.12 2.24
649 715 2.094752 GTGCGTACCCTCGGTAAACTAA 60.095 50.000 0.00 0.00 40.12 2.24
650 716 2.760092 TGCGTACCCTCGGTAAACTAAT 59.240 45.455 0.00 0.00 40.12 1.73
651 717 3.951037 TGCGTACCCTCGGTAAACTAATA 59.049 43.478 0.00 0.00 40.12 0.98
652 718 4.584325 TGCGTACCCTCGGTAAACTAATAT 59.416 41.667 0.00 0.00 40.12 1.28
653 719 5.767665 TGCGTACCCTCGGTAAACTAATATA 59.232 40.000 0.00 0.00 40.12 0.86
654 720 6.264292 TGCGTACCCTCGGTAAACTAATATAA 59.736 38.462 0.00 0.00 40.12 0.98
655 721 6.803807 GCGTACCCTCGGTAAACTAATATAAG 59.196 42.308 0.00 0.00 40.12 1.73
656 722 7.308589 GCGTACCCTCGGTAAACTAATATAAGA 60.309 40.741 0.00 0.00 40.12 2.10
657 723 8.233190 CGTACCCTCGGTAAACTAATATAAGAG 58.767 40.741 0.00 0.00 40.12 2.85
658 724 6.990798 ACCCTCGGTAAACTAATATAAGAGC 58.009 40.000 0.00 0.00 32.11 4.09
659 725 6.091437 CCCTCGGTAAACTAATATAAGAGCG 58.909 44.000 0.00 0.00 0.00 5.03
660 726 6.294397 CCCTCGGTAAACTAATATAAGAGCGT 60.294 42.308 0.00 0.00 0.00 5.07
661 727 7.144000 CCTCGGTAAACTAATATAAGAGCGTT 58.856 38.462 0.00 0.00 0.00 4.84
662 728 7.650903 CCTCGGTAAACTAATATAAGAGCGTTT 59.349 37.037 0.00 0.00 0.00 3.60
663 729 9.669353 CTCGGTAAACTAATATAAGAGCGTTTA 57.331 33.333 0.00 0.00 0.00 2.01
664 730 9.669353 TCGGTAAACTAATATAAGAGCGTTTAG 57.331 33.333 0.00 0.00 30.36 1.85
665 731 9.669353 CGGTAAACTAATATAAGAGCGTTTAGA 57.331 33.333 0.00 0.00 30.36 2.10
710 776 8.967552 AACGCTCTTATATTAGTTTATCGGAG 57.032 34.615 0.00 0.00 0.00 4.63
711 777 7.536855 ACGCTCTTATATTAGTTTATCGGAGG 58.463 38.462 0.00 0.00 0.00 4.30
712 778 6.973474 CGCTCTTATATTAGTTTATCGGAGGG 59.027 42.308 0.00 0.00 0.00 4.30
713 779 7.148120 CGCTCTTATATTAGTTTATCGGAGGGA 60.148 40.741 0.00 0.00 32.05 4.20
714 780 8.192110 GCTCTTATATTAGTTTATCGGAGGGAG 58.808 40.741 0.00 0.00 0.00 4.30
715 781 9.245481 CTCTTATATTAGTTTATCGGAGGGAGT 57.755 37.037 0.00 0.00 0.00 3.85
718 784 5.725325 ATTAGTTTATCGGAGGGAGTAGC 57.275 43.478 0.00 0.00 0.00 3.58
719 785 3.315880 AGTTTATCGGAGGGAGTAGCT 57.684 47.619 0.00 0.00 0.00 3.32
726 792 0.745468 GGAGGGAGTAGCTTACACCG 59.255 60.000 0.00 0.00 39.90 4.94
755 821 4.097589 ACACGCTAATGGAGGAGTAAGTAC 59.902 45.833 0.00 0.00 0.00 2.73
756 822 4.097437 CACGCTAATGGAGGAGTAAGTACA 59.903 45.833 0.00 0.00 0.00 2.90
757 823 4.338682 ACGCTAATGGAGGAGTAAGTACAG 59.661 45.833 0.00 0.00 0.00 2.74
758 824 4.338682 CGCTAATGGAGGAGTAAGTACAGT 59.661 45.833 0.00 0.00 0.00 3.55
759 825 5.530171 CGCTAATGGAGGAGTAAGTACAGTA 59.470 44.000 0.00 0.00 0.00 2.74
777 843 5.413499 ACAGTAATTAATTAGCCACGTCGT 58.587 37.500 8.18 0.00 0.00 4.34
794 860 0.459237 CGTCCATGTGAGCCAGTCTC 60.459 60.000 0.00 0.00 42.23 3.36
802 868 2.756840 TGAGCCAGTCTCACATTCTG 57.243 50.000 0.00 0.00 46.34 3.02
803 869 1.277273 TGAGCCAGTCTCACATTCTGG 59.723 52.381 6.13 6.13 46.34 3.86
807 873 1.678123 CCAGTCTCACATTCTGGCTGG 60.678 57.143 0.00 0.00 41.46 4.85
810 876 1.001764 CTCACATTCTGGCTGGCCA 60.002 57.895 13.96 13.96 45.02 5.36
822 904 3.306595 CTGGCCAGAGCGCTTCAGA 62.307 63.158 29.88 0.00 41.24 3.27
823 905 2.817396 GGCCAGAGCGCTTCAGAC 60.817 66.667 13.26 0.41 41.24 3.51
825 907 2.659016 CCAGAGCGCTTCAGACCA 59.341 61.111 13.26 0.00 0.00 4.02
861 943 1.201647 CAGCAGGCAGACAAATCTTGG 59.798 52.381 0.00 0.00 30.42 3.61
869 951 3.686726 GCAGACAAATCTTGGACTACTGG 59.313 47.826 0.00 0.00 30.42 4.00
871 953 3.584848 AGACAAATCTTGGACTACTGGCT 59.415 43.478 0.00 0.00 34.12 4.75
876 958 1.623811 TCTTGGACTACTGGCTCCAAC 59.376 52.381 1.34 0.00 40.89 3.77
879 961 1.071699 TGGACTACTGGCTCCAACAAC 59.928 52.381 0.00 0.00 33.39 3.32
884 966 4.020543 ACTACTGGCTCCAACAACAAAAA 58.979 39.130 0.00 0.00 0.00 1.94
1148 1307 4.129148 AAATCCAGCCCCTCCGCC 62.129 66.667 0.00 0.00 0.00 6.13
1196 1368 0.533085 GCTCCCTCAAATACGCTCCC 60.533 60.000 0.00 0.00 0.00 4.30
1413 1609 1.514873 GGTTAGCGTCCGGTGTACG 60.515 63.158 9.65 9.65 43.12 3.67
1414 1610 1.210155 GTTAGCGTCCGGTGTACGT 59.790 57.895 14.72 0.00 42.26 3.57
1415 1611 0.446222 GTTAGCGTCCGGTGTACGTA 59.554 55.000 14.72 0.00 42.26 3.57
1432 1628 8.112449 GGTGTACGTACTGCTTAATTGTAATTC 58.888 37.037 25.12 0.00 0.00 2.17
1444 1641 3.449322 TTGTAATTCTCGTGCGCTTTC 57.551 42.857 9.73 0.00 0.00 2.62
1470 1667 2.159627 CCTTGTCGTATTTGTGGTGCTC 59.840 50.000 0.00 0.00 0.00 4.26
1502 1706 1.063174 CTGCCTAATTCGTCTTGCTGC 59.937 52.381 0.00 0.00 0.00 5.25
1505 1709 2.476854 GCCTAATTCGTCTTGCTGCTTG 60.477 50.000 0.00 0.00 0.00 4.01
1506 1710 2.476854 CCTAATTCGTCTTGCTGCTTGC 60.477 50.000 0.00 0.00 43.25 4.01
1507 1711 1.242076 AATTCGTCTTGCTGCTTGCT 58.758 45.000 0.00 0.00 43.37 3.91
1508 1712 1.242076 ATTCGTCTTGCTGCTTGCTT 58.758 45.000 0.00 0.00 43.37 3.91
1523 1727 0.239879 TGCTTTTGGTCGATTTCGCC 59.760 50.000 0.00 1.21 39.60 5.54
1645 1860 5.320723 CGTTTGCATCGCTTAATTAGTTGA 58.679 37.500 0.00 0.00 0.00 3.18
1723 1952 3.746045 TCCTCTGTTTAGCGTTTGTCT 57.254 42.857 0.00 0.00 0.00 3.41
1756 1985 2.208431 CAACGAGGAAGAGATCATGGC 58.792 52.381 0.00 0.00 0.00 4.40
1757 1986 1.489481 ACGAGGAAGAGATCATGGCA 58.511 50.000 0.00 0.00 0.00 4.92
1758 1987 1.833630 ACGAGGAAGAGATCATGGCAA 59.166 47.619 0.00 0.00 0.00 4.52
1759 1988 2.237143 ACGAGGAAGAGATCATGGCAAA 59.763 45.455 0.00 0.00 0.00 3.68
1760 1989 3.273434 CGAGGAAGAGATCATGGCAAAA 58.727 45.455 0.00 0.00 0.00 2.44
1764 2003 6.257994 AGGAAGAGATCATGGCAAAATCTA 57.742 37.500 13.15 0.00 30.04 1.98
1776 2015 5.136828 TGGCAAAATCTAAAGAACTGGTCA 58.863 37.500 0.00 0.00 0.00 4.02
1783 2022 2.938956 AAAGAACTGGTCAGTCTGGG 57.061 50.000 3.93 0.00 41.58 4.45
1853 2098 8.388656 AGTAGAGTATGATAAAACTTGGGGAA 57.611 34.615 0.00 0.00 0.00 3.97
1865 2111 0.548197 TTGGGGAACGTAGGGGATGT 60.548 55.000 0.00 0.00 0.00 3.06
1906 2152 1.398390 GAGCCCAAACTTGTATCGCAG 59.602 52.381 0.00 0.00 0.00 5.18
1958 2204 4.940046 AGATGCGTCTTCTTGACAATTCAT 59.060 37.500 1.48 0.00 45.60 2.57
1960 2206 5.530519 TGCGTCTTCTTGACAATTCATAC 57.469 39.130 0.00 0.00 45.60 2.39
1968 2214 1.930503 TGACAATTCATACGCGCGAAT 59.069 42.857 39.36 22.60 33.27 3.34
1971 2217 4.033014 TGACAATTCATACGCGCGAATAAA 59.967 37.500 39.36 23.70 31.65 1.40
2007 2253 7.674471 AGCAAGTAGAAAGATCCAACTTAAC 57.326 36.000 0.00 0.00 33.07 2.01
2021 2267 1.980036 ACTTAACTTGGCCGTCCCTTA 59.020 47.619 0.00 0.00 0.00 2.69
2022 2268 2.027469 ACTTAACTTGGCCGTCCCTTAG 60.027 50.000 0.00 0.00 0.00 2.18
2038 2284 3.456277 CCCTTAGGATGCCTCTGTAACTT 59.544 47.826 0.00 0.00 34.61 2.66
2097 2343 0.802222 TGATGTGACTTCGCTAGCGC 60.802 55.000 31.82 18.14 39.59 5.92
2112 2358 3.303395 GCTAGCGCGCTAATCTTTGAATT 60.303 43.478 37.29 13.80 0.00 2.17
2120 2366 5.287035 GCGCTAATCTTTGAATTGTTCTTGG 59.713 40.000 0.00 0.00 0.00 3.61
2128 2374 8.347004 TCTTTGAATTGTTCTTGGTATGCATA 57.653 30.769 1.16 1.16 0.00 3.14
2131 2377 8.984891 TTGAATTGTTCTTGGTATGCATAAAG 57.015 30.769 8.28 9.73 0.00 1.85
2132 2378 8.347004 TGAATTGTTCTTGGTATGCATAAAGA 57.653 30.769 14.25 14.25 0.00 2.52
2135 2381 9.643693 AATTGTTCTTGGTATGCATAAAGAAAG 57.356 29.630 24.94 17.74 39.60 2.62
2143 2389 9.547753 TTGGTATGCATAAAGAAAGATAGACTC 57.452 33.333 8.28 0.00 0.00 3.36
2150 2396 9.732130 GCATAAAGAAAGATAGACTCCCATAAT 57.268 33.333 0.00 0.00 0.00 1.28
2184 2430 7.524717 AAAATAAAGAGGACTGCTTGCTTTA 57.475 32.000 0.00 0.00 36.04 1.85
2295 2557 8.147058 AGAAGTAGCAGTAGATCCACAATAATG 58.853 37.037 0.00 0.00 0.00 1.90
2334 2596 5.858381 TGTTCACTTGCTCACTATTCTTCT 58.142 37.500 0.00 0.00 0.00 2.85
2341 2603 6.754209 ACTTGCTCACTATTCTTCTATCAACG 59.246 38.462 0.00 0.00 0.00 4.10
2464 2726 4.142204 TGTTTCTTGTTGCAGCTTCATTCA 60.142 37.500 1.17 0.00 0.00 2.57
2473 2735 5.509716 TGCAGCTTCATTCAGATTTATGG 57.490 39.130 0.00 0.00 0.00 2.74
2523 2794 7.325694 AGAAATGAAATAGAAAGCCACCATTG 58.674 34.615 0.00 0.00 0.00 2.82
2534 2805 1.271597 GCCACCATTGTCTGTCTTCCT 60.272 52.381 0.00 0.00 0.00 3.36
2536 2807 3.490348 CCACCATTGTCTGTCTTCCTTT 58.510 45.455 0.00 0.00 0.00 3.11
2565 2836 3.657398 ATCAAGGAATCATGGTGCAGA 57.343 42.857 0.00 0.00 0.00 4.26
2587 2858 5.477984 AGAAACTGAAATGCCAATAGCTTCA 59.522 36.000 0.00 0.00 44.23 3.02
2681 2952 2.170607 ACTGTCTCGGATTATGGGTTGG 59.829 50.000 0.00 0.00 0.00 3.77
2773 3044 0.665369 GTGGCATGTGCAGTTTCAGC 60.665 55.000 7.36 0.00 44.36 4.26
2936 3207 3.253188 TGCATTAAATCGGAGGCATAAGC 59.747 43.478 0.00 0.00 41.10 3.09
3072 3343 2.615912 GGAGATTACAGCCACTCAATGC 59.384 50.000 0.00 0.00 0.00 3.56
3077 3348 0.537143 ACAGCCACTCAATGCGGAAA 60.537 50.000 0.00 0.00 0.00 3.13
3139 3410 1.871080 AGGCGATATGCTTTTCCTCG 58.129 50.000 0.00 0.00 45.43 4.63
3325 3608 7.787028 TGGTTACTATGAGTATGCATGTGTAA 58.213 34.615 10.16 5.40 29.64 2.41
3393 3837 7.888021 TGTAAATGTAGAATCAGAAACATGGGT 59.112 33.333 0.00 0.00 33.04 4.51
3414 3858 3.378427 GTCAGGTTTCTGTTTGCAACTCT 59.622 43.478 0.00 0.00 41.59 3.24
3445 3889 9.950680 TTTGTTTACTCTCTCAAAATAAGCTTG 57.049 29.630 9.86 0.00 0.00 4.01
3479 3930 9.006215 GCGGTTATTTTGTAAATGTAGAATCAC 57.994 33.333 0.00 0.00 0.00 3.06
3494 3945 2.592102 ATCACAAACATGGAGCAGGT 57.408 45.000 0.00 0.00 0.00 4.00
3510 3961 3.055891 AGCAGGTTTTCTGTTTGCAACTT 60.056 39.130 0.00 0.00 45.08 2.66
3550 4001 7.326968 ACTCTCTCAAAATAAGCTTAATGCC 57.673 36.000 10.85 0.00 44.23 4.40
3572 4023 7.917003 TGCCAGGCTATCAATTATCAGTATAA 58.083 34.615 14.15 0.00 32.20 0.98
3614 4065 5.416947 TCATCTTCTAGTTTTACTTCGCCC 58.583 41.667 0.00 0.00 0.00 6.13
3630 4081 2.146342 CGCCCCAAATGTGATAGCTAG 58.854 52.381 0.00 0.00 0.00 3.42
3703 4154 6.519551 GCACGTATAAACTATATCCCCCAAGT 60.520 42.308 0.00 0.00 0.00 3.16
3847 4298 6.014755 TGGCATTCTAATGTTTCAATCAACCA 60.015 34.615 4.71 0.00 38.65 3.67
4008 4462 5.970592 TGGAGTCTACTGAACATGATGAAG 58.029 41.667 0.00 0.00 0.00 3.02
4017 4471 6.882656 ACTGAACATGATGAAGCTATACAGT 58.117 36.000 0.00 0.00 0.00 3.55
4049 4503 2.493278 CACCCCTTGCGAATTTGAAGAT 59.507 45.455 0.00 0.00 0.00 2.40
4067 4521 7.072263 TGAAGATGAAGAGGAAAGAGAGTTT 57.928 36.000 0.00 0.00 0.00 2.66
4082 4536 4.006319 GAGAGTTTTGCTACTTGCTGGAT 58.994 43.478 0.00 0.00 43.37 3.41
4202 4656 9.468532 GACAAGCTTGAGAAGAAATACAAAAAT 57.531 29.630 32.50 3.23 0.00 1.82
4269 4723 4.179298 GGTAAACTCCATACTGTCGGAAC 58.821 47.826 1.12 0.00 0.00 3.62
4284 4738 1.177401 GGAACTTCTTGCCCCATGTC 58.823 55.000 0.00 0.00 0.00 3.06
4343 4797 2.429930 CCAGCGTGGGGTTCAGAA 59.570 61.111 0.00 0.00 32.67 3.02
4352 4806 0.696501 GGGGTTCAGAAGGCCTGTTA 59.303 55.000 5.69 0.00 43.38 2.41
4418 4884 3.546815 CGCCAAGAGAGAAACAAGTGTTG 60.547 47.826 0.00 0.00 38.44 3.33
4419 4885 3.243201 GCCAAGAGAGAAACAAGTGTTGG 60.243 47.826 0.00 0.00 38.44 3.77
4463 4929 2.846206 AGATTACATCAACAGGGCAGGA 59.154 45.455 0.00 0.00 0.00 3.86
4482 4948 2.158696 GGAAGGGATGTTGAGAGGATGG 60.159 54.545 0.00 0.00 0.00 3.51
4574 5043 2.032528 TGTCAGCTTTCTGGCCCG 59.967 61.111 0.00 0.00 44.11 6.13
4620 5097 4.278419 GGTCATTGCTTTCTGTGTTAGGTT 59.722 41.667 0.00 0.00 0.00 3.50
4640 5117 6.731467 AGGTTAGGTTGATCATTGGTTGTAT 58.269 36.000 0.00 0.00 0.00 2.29
4875 5359 0.813821 GGAGCAAAATGTGGGAGAGC 59.186 55.000 0.00 0.00 0.00 4.09
4971 5456 9.304731 TGAACATTTATATTCTCATTTTGCAGC 57.695 29.630 0.00 0.00 0.00 5.25
4972 5457 9.304731 GAACATTTATATTCTCATTTTGCAGCA 57.695 29.630 0.00 0.00 0.00 4.41
4973 5458 9.656040 AACATTTATATTCTCATTTTGCAGCAA 57.344 25.926 2.83 2.83 0.00 3.91
4974 5459 9.090692 ACATTTATATTCTCATTTTGCAGCAAC 57.909 29.630 7.54 0.00 0.00 4.17
4975 5460 9.089601 CATTTATATTCTCATTTTGCAGCAACA 57.910 29.630 7.54 0.70 0.00 3.33
4976 5461 8.692110 TTTATATTCTCATTTTGCAGCAACAG 57.308 30.769 7.54 1.87 0.00 3.16
4977 5462 2.427232 TCTCATTTTGCAGCAACAGC 57.573 45.000 7.54 0.00 0.00 4.40
4978 5463 1.958579 TCTCATTTTGCAGCAACAGCT 59.041 42.857 7.54 0.00 39.75 4.24
4979 5464 3.148412 TCTCATTTTGCAGCAACAGCTA 58.852 40.909 7.54 0.00 36.70 3.32
4980 5465 3.058016 TCTCATTTTGCAGCAACAGCTAC 60.058 43.478 7.54 0.00 36.70 3.58
4981 5466 2.622470 TCATTTTGCAGCAACAGCTACA 59.378 40.909 7.54 0.00 36.70 2.74
4995 5498 2.679355 GCTACATTGTTGTTGCGTCA 57.321 45.000 0.00 0.00 42.96 4.35
5014 5517 8.542497 TGCGTCAACAAGAAATAATACTAGTT 57.458 30.769 0.00 0.00 0.00 2.24
5043 5547 5.759963 AGTAGAGCGTATATGTTTCCTTCG 58.240 41.667 0.00 0.00 0.00 3.79
5059 5567 9.491675 TGTTTCCTTCGTTACATACTTAATTCA 57.508 29.630 0.00 0.00 0.00 2.57
5067 5575 9.961265 TCGTTACATACTTAATTCATGGAGTAG 57.039 33.333 0.00 0.00 0.00 2.57
5068 5576 8.700644 CGTTACATACTTAATTCATGGAGTAGC 58.299 37.037 0.00 0.00 0.00 3.58
5077 5585 8.712228 TTAATTCATGGAGTAGCATCTCTCTA 57.288 34.615 7.82 0.00 35.11 2.43
5214 5723 5.370880 ACTGCCTCCATTCCAGAATATAAGT 59.629 40.000 0.00 0.00 0.00 2.24
5236 5745 7.623268 AGTTGCATCAATTTTCGTAAAAGTC 57.377 32.000 0.00 0.00 33.22 3.01
5248 5757 8.603983 TTTTCGTAAAAGTCAACACATGTAAC 57.396 30.769 0.00 0.00 0.00 2.50
5265 5774 7.121168 CACATGTAACTTTGACCTGGATTACAT 59.879 37.037 0.00 7.79 41.56 2.29
5278 5787 7.850193 ACCTGGATTACATTGCAATACAAAAT 58.150 30.769 12.53 9.17 42.86 1.82
5630 6147 1.524863 CGGACGACACCAAGACCTCT 61.525 60.000 0.00 0.00 0.00 3.69
5651 6168 2.689034 GGGGCAGCCTCACTAGGT 60.689 66.667 12.43 0.00 45.64 3.08
5662 6179 0.543410 TCACTAGGTTGGCTCCCGAA 60.543 55.000 0.00 0.00 0.00 4.30
5732 6249 2.040544 CCATGACGACCAAGGCCAC 61.041 63.158 5.01 0.00 0.00 5.01
5767 6285 2.572290 GTGCAGTGTACCAGTTTCCTT 58.428 47.619 0.00 0.00 0.00 3.36
5943 6462 6.092807 GCAAAGACTACTTTTGTCAGGATAGG 59.907 42.308 0.00 0.00 43.41 2.57
5946 6465 8.431910 AAGACTACTTTTGTCAGGATAGGTTA 57.568 34.615 0.00 0.00 36.94 2.85
5974 6493 2.956132 TGTCTCCCTTCAAATTTGGCA 58.044 42.857 17.90 4.75 0.00 4.92
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
96 98 1.610522 GGTCAGCTGCTTCAATGTGTT 59.389 47.619 9.47 0.00 0.00 3.32
97 99 1.242076 GGTCAGCTGCTTCAATGTGT 58.758 50.000 9.47 0.00 0.00 3.72
109 111 0.978146 ATGCTAAGGGTCGGTCAGCT 60.978 55.000 0.00 0.00 33.38 4.24
118 120 1.609783 GACAGGCCATGCTAAGGGT 59.390 57.895 5.01 0.00 0.00 4.34
162 164 7.549134 GGAGAATAGATTGTGATGTGTACAACA 59.451 37.037 0.00 0.00 44.79 3.33
168 176 5.664908 AGGAGGAGAATAGATTGTGATGTGT 59.335 40.000 0.00 0.00 0.00 3.72
175 194 3.211000 AGGGGAGGAGGAGAATAGATTGT 59.789 47.826 0.00 0.00 0.00 2.71
180 199 2.225267 GGAGAGGGGAGGAGGAGAATAG 60.225 59.091 0.00 0.00 0.00 1.73
184 203 2.015726 GGGAGAGGGGAGGAGGAGA 61.016 68.421 0.00 0.00 0.00 3.71
205 226 1.279496 CAGTTGTGGAGGGAGATGGA 58.721 55.000 0.00 0.00 0.00 3.41
251 274 3.606662 ATCACGATCCGCCCCGAG 61.607 66.667 0.00 0.00 0.00 4.63
253 276 3.226429 ATCATCACGATCCGCCCCG 62.226 63.158 0.00 0.00 0.00 5.73
254 277 1.669115 CATCATCACGATCCGCCCC 60.669 63.158 0.00 0.00 29.21 5.80
271 331 1.118965 TCCAGAGTTCAAGGACGGCA 61.119 55.000 0.00 0.00 0.00 5.69
276 336 0.832135 ACGGCTCCAGAGTTCAAGGA 60.832 55.000 0.00 0.00 0.00 3.36
280 340 1.863662 GACGACGGCTCCAGAGTTCA 61.864 60.000 0.00 0.00 0.00 3.18
312 372 1.507174 CACCTTCGTCGAGGAGTCC 59.493 63.158 15.00 0.00 39.25 3.85
314 374 0.961358 CTCCACCTTCGTCGAGGAGT 60.961 60.000 16.40 1.10 40.71 3.85
373 433 1.969589 TCGACGTGGACTGCTGCTA 60.970 57.895 0.00 0.00 0.00 3.49
391 454 2.528378 AACTAGCCCACCACCCGT 60.528 61.111 0.00 0.00 0.00 5.28
393 456 2.228480 TCCAACTAGCCCACCACCC 61.228 63.158 0.00 0.00 0.00 4.61
399 462 2.967397 CGACGTCCAACTAGCCCA 59.033 61.111 10.58 0.00 0.00 5.36
404 467 2.652530 GGTGGCGACGTCCAACTA 59.347 61.111 16.09 0.00 40.65 2.24
407 470 4.651008 GTCGGTGGCGACGTCCAA 62.651 66.667 10.58 0.00 37.96 3.53
426 492 1.405526 CCATCCGGTCCTTGTACTGTG 60.406 57.143 0.00 0.00 0.00 3.66
427 493 0.902531 CCATCCGGTCCTTGTACTGT 59.097 55.000 0.00 0.00 0.00 3.55
428 494 1.137086 CTCCATCCGGTCCTTGTACTG 59.863 57.143 0.00 0.00 0.00 2.74
434 500 1.281925 ATTGGCTCCATCCGGTCCTT 61.282 55.000 0.00 0.00 0.00 3.36
450 516 3.257561 CGGAGCGACGGAGCATTG 61.258 66.667 7.12 0.00 40.15 2.82
451 517 3.760035 ACGGAGCGACGGAGCATT 61.760 61.111 7.92 0.00 40.15 3.56
483 549 2.989824 CCGGTGACTGAGTCGGGT 60.990 66.667 8.23 0.00 38.93 5.28
488 554 2.989824 CGTCCCCGGTGACTGAGT 60.990 66.667 15.36 0.00 32.97 3.41
492 558 2.726822 GAAAAGCGTCCCCGGTGACT 62.727 60.000 15.36 0.00 45.47 3.41
508 574 1.275666 TCCGGCTTCATGAGGAGAAA 58.724 50.000 9.36 0.00 0.00 2.52
509 575 2.990977 TCCGGCTTCATGAGGAGAA 58.009 52.632 9.36 0.00 0.00 2.87
510 576 4.785575 TCCGGCTTCATGAGGAGA 57.214 55.556 9.36 0.00 0.00 3.71
547 613 1.067425 TCCGATTTGGACGTCGTGATT 60.067 47.619 9.92 0.00 43.74 2.57
548 614 0.528924 TCCGATTTGGACGTCGTGAT 59.471 50.000 9.92 2.62 43.74 3.06
549 615 1.958323 TCCGATTTGGACGTCGTGA 59.042 52.632 9.92 0.00 43.74 4.35
550 616 4.563630 TCCGATTTGGACGTCGTG 57.436 55.556 9.92 0.00 43.74 4.35
558 624 0.461870 TCACGAGGCATCCGATTTGG 60.462 55.000 0.00 0.00 40.09 3.28
559 625 1.328680 CTTCACGAGGCATCCGATTTG 59.671 52.381 0.00 0.00 0.00 2.32
560 626 1.207089 TCTTCACGAGGCATCCGATTT 59.793 47.619 0.00 0.00 0.00 2.17
561 627 0.824109 TCTTCACGAGGCATCCGATT 59.176 50.000 0.00 0.00 0.00 3.34
562 628 0.824109 TTCTTCACGAGGCATCCGAT 59.176 50.000 0.00 0.00 0.00 4.18
563 629 0.606096 TTTCTTCACGAGGCATCCGA 59.394 50.000 0.00 0.00 0.00 4.55
564 630 1.002366 CTTTCTTCACGAGGCATCCG 58.998 55.000 0.00 0.00 0.00 4.18
565 631 1.373570 CCTTTCTTCACGAGGCATCC 58.626 55.000 0.00 0.00 0.00 3.51
570 636 0.674895 CAGGGCCTTTCTTCACGAGG 60.675 60.000 1.32 0.00 0.00 4.63
571 637 1.301677 GCAGGGCCTTTCTTCACGAG 61.302 60.000 1.32 0.00 0.00 4.18
572 638 1.302511 GCAGGGCCTTTCTTCACGA 60.303 57.895 1.32 0.00 0.00 4.35
573 639 1.301677 GAGCAGGGCCTTTCTTCACG 61.302 60.000 1.32 0.00 0.00 4.35
574 640 0.962855 GGAGCAGGGCCTTTCTTCAC 60.963 60.000 1.32 0.00 0.00 3.18
575 641 1.380302 GGAGCAGGGCCTTTCTTCA 59.620 57.895 1.32 0.00 0.00 3.02
576 642 1.746991 CGGAGCAGGGCCTTTCTTC 60.747 63.158 1.32 1.45 0.00 2.87
577 643 2.352805 CGGAGCAGGGCCTTTCTT 59.647 61.111 1.32 0.00 0.00 2.52
578 644 2.930562 ACGGAGCAGGGCCTTTCT 60.931 61.111 1.32 3.52 0.00 2.52
579 645 2.180159 TACACGGAGCAGGGCCTTTC 62.180 60.000 1.32 4.55 0.00 2.62
580 646 1.562672 ATACACGGAGCAGGGCCTTT 61.563 55.000 1.32 0.00 0.00 3.11
581 647 1.995626 ATACACGGAGCAGGGCCTT 60.996 57.895 1.32 0.00 0.00 4.35
582 648 2.365635 ATACACGGAGCAGGGCCT 60.366 61.111 0.00 0.00 0.00 5.19
583 649 2.203070 CATACACGGAGCAGGGCC 60.203 66.667 0.00 0.00 0.00 5.80
584 650 1.078426 AACATACACGGAGCAGGGC 60.078 57.895 0.00 0.00 0.00 5.19
585 651 0.806102 CGAACATACACGGAGCAGGG 60.806 60.000 0.00 0.00 0.00 4.45
586 652 2.665777 CGAACATACACGGAGCAGG 58.334 57.895 0.00 0.00 0.00 4.85
593 659 0.655733 GGGAATGCCGAACATACACG 59.344 55.000 0.00 0.00 38.34 4.49
594 660 1.940613 GAGGGAATGCCGAACATACAC 59.059 52.381 0.00 0.00 38.34 2.90
595 661 1.134220 GGAGGGAATGCCGAACATACA 60.134 52.381 0.00 0.00 38.34 2.29
596 662 1.594331 GGAGGGAATGCCGAACATAC 58.406 55.000 0.00 0.00 38.34 2.39
597 663 0.472471 GGGAGGGAATGCCGAACATA 59.528 55.000 0.00 0.00 38.34 2.29
598 664 1.227383 GGGAGGGAATGCCGAACAT 59.773 57.895 0.00 0.00 42.30 2.71
599 665 1.570857 ATGGGAGGGAATGCCGAACA 61.571 55.000 0.00 0.00 43.95 3.18
600 666 1.103398 CATGGGAGGGAATGCCGAAC 61.103 60.000 0.00 0.00 43.95 3.95
601 667 1.227102 CATGGGAGGGAATGCCGAA 59.773 57.895 0.00 0.00 43.95 4.30
602 668 0.692756 TACATGGGAGGGAATGCCGA 60.693 55.000 0.00 0.00 43.95 5.54
603 669 0.182537 TTACATGGGAGGGAATGCCG 59.817 55.000 0.00 0.00 43.95 5.69
604 670 2.430694 GTTTTACATGGGAGGGAATGCC 59.569 50.000 0.00 0.00 40.61 4.40
605 671 3.096092 TGTTTTACATGGGAGGGAATGC 58.904 45.455 0.00 0.00 0.00 3.56
606 672 4.772100 ACTTGTTTTACATGGGAGGGAATG 59.228 41.667 0.00 0.00 0.00 2.67
607 673 4.772100 CACTTGTTTTACATGGGAGGGAAT 59.228 41.667 0.00 0.00 29.02 3.01
608 674 4.148838 CACTTGTTTTACATGGGAGGGAA 58.851 43.478 0.00 0.00 29.02 3.97
609 675 3.761897 CACTTGTTTTACATGGGAGGGA 58.238 45.455 0.00 0.00 29.02 4.20
610 676 2.231235 GCACTTGTTTTACATGGGAGGG 59.769 50.000 0.00 0.00 29.02 4.30
611 677 2.095263 CGCACTTGTTTTACATGGGAGG 60.095 50.000 0.00 0.00 29.02 4.30
612 678 2.552315 ACGCACTTGTTTTACATGGGAG 59.448 45.455 0.00 2.03 33.79 4.30
613 679 2.577700 ACGCACTTGTTTTACATGGGA 58.422 42.857 0.00 0.00 29.02 4.37
614 680 3.365565 GGTACGCACTTGTTTTACATGGG 60.366 47.826 0.00 0.00 30.65 4.00
615 681 3.365565 GGGTACGCACTTGTTTTACATGG 60.366 47.826 4.83 0.00 0.00 3.66
616 682 3.500680 AGGGTACGCACTTGTTTTACATG 59.499 43.478 12.95 0.00 0.00 3.21
617 683 3.746940 AGGGTACGCACTTGTTTTACAT 58.253 40.909 12.95 0.00 0.00 2.29
618 684 3.132925 GAGGGTACGCACTTGTTTTACA 58.867 45.455 12.95 0.00 0.00 2.41
619 685 2.156310 CGAGGGTACGCACTTGTTTTAC 59.844 50.000 12.95 0.00 0.00 2.01
620 686 2.406130 CGAGGGTACGCACTTGTTTTA 58.594 47.619 12.95 0.00 0.00 1.52
621 687 1.223187 CGAGGGTACGCACTTGTTTT 58.777 50.000 12.95 0.00 0.00 2.43
622 688 0.601841 CCGAGGGTACGCACTTGTTT 60.602 55.000 12.95 0.00 0.00 2.83
623 689 1.005394 CCGAGGGTACGCACTTGTT 60.005 57.895 12.95 0.00 0.00 2.83
624 690 0.895100 TACCGAGGGTACGCACTTGT 60.895 55.000 12.95 8.34 37.09 3.16
625 691 0.244450 TTACCGAGGGTACGCACTTG 59.756 55.000 12.95 2.26 37.97 3.16
626 692 0.968405 TTTACCGAGGGTACGCACTT 59.032 50.000 12.95 0.00 37.97 3.16
627 693 0.244721 GTTTACCGAGGGTACGCACT 59.755 55.000 12.95 0.00 37.97 4.40
628 694 0.244721 AGTTTACCGAGGGTACGCAC 59.755 55.000 12.95 4.93 37.97 5.34
629 695 1.832883 TAGTTTACCGAGGGTACGCA 58.167 50.000 12.95 0.00 37.97 5.24
630 696 2.939460 TTAGTTTACCGAGGGTACGC 57.061 50.000 0.77 0.77 37.97 4.42
631 697 8.099364 TCTTATATTAGTTTACCGAGGGTACG 57.901 38.462 0.00 0.00 37.97 3.67
632 698 8.026026 GCTCTTATATTAGTTTACCGAGGGTAC 58.974 40.741 0.00 0.00 37.97 3.34
633 699 7.094634 CGCTCTTATATTAGTTTACCGAGGGTA 60.095 40.741 0.00 0.00 37.09 3.69
634 700 6.294397 CGCTCTTATATTAGTTTACCGAGGGT 60.294 42.308 0.00 0.00 40.16 4.34
635 701 6.091437 CGCTCTTATATTAGTTTACCGAGGG 58.909 44.000 0.00 0.00 0.00 4.30
636 702 6.675987 ACGCTCTTATATTAGTTTACCGAGG 58.324 40.000 0.00 0.00 0.00 4.63
637 703 8.571461 AAACGCTCTTATATTAGTTTACCGAG 57.429 34.615 0.00 0.00 31.14 4.63
638 704 9.669353 CTAAACGCTCTTATATTAGTTTACCGA 57.331 33.333 0.00 0.00 34.29 4.69
639 705 9.669353 TCTAAACGCTCTTATATTAGTTTACCG 57.331 33.333 0.00 0.00 34.29 4.02
684 750 9.408069 CTCCGATAAACTAATATAAGAGCGTTT 57.592 33.333 0.00 0.00 0.00 3.60
685 751 8.027771 CCTCCGATAAACTAATATAAGAGCGTT 58.972 37.037 0.00 0.00 0.00 4.84
686 752 7.362747 CCCTCCGATAAACTAATATAAGAGCGT 60.363 40.741 0.00 0.00 0.00 5.07
687 753 6.973474 CCCTCCGATAAACTAATATAAGAGCG 59.027 42.308 0.00 0.00 0.00 5.03
688 754 8.064336 TCCCTCCGATAAACTAATATAAGAGC 57.936 38.462 0.00 0.00 0.00 4.09
689 755 9.245481 ACTCCCTCCGATAAACTAATATAAGAG 57.755 37.037 0.00 0.00 0.00 2.85
692 758 8.964772 GCTACTCCCTCCGATAAACTAATATAA 58.035 37.037 0.00 0.00 0.00 0.98
693 759 8.334734 AGCTACTCCCTCCGATAAACTAATATA 58.665 37.037 0.00 0.00 0.00 0.86
694 760 7.183460 AGCTACTCCCTCCGATAAACTAATAT 58.817 38.462 0.00 0.00 0.00 1.28
695 761 6.550163 AGCTACTCCCTCCGATAAACTAATA 58.450 40.000 0.00 0.00 0.00 0.98
696 762 5.395611 AGCTACTCCCTCCGATAAACTAAT 58.604 41.667 0.00 0.00 0.00 1.73
697 763 4.801164 AGCTACTCCCTCCGATAAACTAA 58.199 43.478 0.00 0.00 0.00 2.24
698 764 4.450305 AGCTACTCCCTCCGATAAACTA 57.550 45.455 0.00 0.00 0.00 2.24
699 765 3.315880 AGCTACTCCCTCCGATAAACT 57.684 47.619 0.00 0.00 0.00 2.66
700 766 4.340381 TGTAAGCTACTCCCTCCGATAAAC 59.660 45.833 0.00 0.00 0.00 2.01
701 767 4.340381 GTGTAAGCTACTCCCTCCGATAAA 59.660 45.833 0.00 0.00 0.00 1.40
702 768 3.887716 GTGTAAGCTACTCCCTCCGATAA 59.112 47.826 0.00 0.00 0.00 1.75
703 769 3.484407 GTGTAAGCTACTCCCTCCGATA 58.516 50.000 0.00 0.00 0.00 2.92
704 770 2.308690 GTGTAAGCTACTCCCTCCGAT 58.691 52.381 0.00 0.00 0.00 4.18
705 771 1.684248 GGTGTAAGCTACTCCCTCCGA 60.684 57.143 0.00 0.00 36.57 4.55
706 772 0.745468 GGTGTAAGCTACTCCCTCCG 59.255 60.000 0.00 0.00 36.57 4.63
707 773 0.745468 CGGTGTAAGCTACTCCCTCC 59.255 60.000 0.00 0.00 38.72 4.30
708 774 0.102663 GCGGTGTAAGCTACTCCCTC 59.897 60.000 0.00 0.00 38.72 4.30
709 775 0.324460 AGCGGTGTAAGCTACTCCCT 60.324 55.000 0.00 0.00 44.05 4.20
710 776 0.535797 AAGCGGTGTAAGCTACTCCC 59.464 55.000 0.00 0.00 45.31 4.30
711 777 1.641577 CAAGCGGTGTAAGCTACTCC 58.358 55.000 0.00 0.00 45.31 3.85
712 778 1.000145 GCAAGCGGTGTAAGCTACTC 59.000 55.000 0.00 0.00 45.31 2.59
713 779 0.320374 TGCAAGCGGTGTAAGCTACT 59.680 50.000 0.00 0.00 45.31 2.57
714 780 0.442699 GTGCAAGCGGTGTAAGCTAC 59.557 55.000 0.00 0.00 45.31 3.58
715 781 0.034198 TGTGCAAGCGGTGTAAGCTA 59.966 50.000 0.00 0.00 45.31 3.32
717 783 1.082104 GTGTGCAAGCGGTGTAAGC 60.082 57.895 0.00 0.00 0.00 3.09
718 784 1.204062 CGTGTGCAAGCGGTGTAAG 59.796 57.895 0.00 0.00 0.00 2.34
719 785 2.887889 GCGTGTGCAAGCGGTGTAA 61.888 57.895 12.14 0.00 42.15 2.41
726 792 0.097674 CTCCATTAGCGTGTGCAAGC 59.902 55.000 1.98 1.98 46.23 4.01
755 821 5.051240 GGACGACGTGGCTAATTAATTACTG 60.051 44.000 4.58 0.00 0.00 2.74
756 822 5.045872 GGACGACGTGGCTAATTAATTACT 58.954 41.667 4.58 0.00 0.00 2.24
757 823 4.805192 TGGACGACGTGGCTAATTAATTAC 59.195 41.667 4.58 2.35 0.00 1.89
758 824 5.008619 TGGACGACGTGGCTAATTAATTA 57.991 39.130 4.58 7.66 0.00 1.40
759 825 3.864243 TGGACGACGTGGCTAATTAATT 58.136 40.909 4.58 5.89 0.00 1.40
763 829 1.066430 ACATGGACGACGTGGCTAATT 60.066 47.619 4.58 0.00 40.51 1.40
807 873 2.817396 GGTCTGAAGCGCTCTGGC 60.817 66.667 12.06 9.96 0.00 4.85
810 876 1.806461 TTCGTGGTCTGAAGCGCTCT 61.806 55.000 12.06 0.00 0.00 4.09
817 899 4.330944 TCTTAAAGCTTCGTGGTCTGAA 57.669 40.909 0.00 0.00 0.00 3.02
861 943 2.543777 TGTTGTTGGAGCCAGTAGTC 57.456 50.000 0.00 0.00 0.00 2.59
931 1036 3.782443 GTACCCAGTCCCTGCCCG 61.782 72.222 0.00 0.00 0.00 6.13
941 1048 4.201812 CGCTTGTCACATAATTGTACCCAG 60.202 45.833 0.00 0.00 33.76 4.45
942 1049 3.687212 CGCTTGTCACATAATTGTACCCA 59.313 43.478 0.00 0.00 33.76 4.51
952 1059 0.809636 CCGGCATCGCTTGTCACATA 60.810 55.000 0.00 0.00 34.56 2.29
956 1063 2.032634 GTTCCGGCATCGCTTGTCA 61.033 57.895 0.00 0.00 34.56 3.58
983 1093 2.513897 CCGGCCCTCGTGGATTTC 60.514 66.667 4.76 0.00 37.11 2.17
986 1096 4.096003 CAACCGGCCCTCGTGGAT 62.096 66.667 0.00 0.00 37.11 3.41
989 1099 4.323477 TTCCAACCGGCCCTCGTG 62.323 66.667 0.00 0.00 37.11 4.35
990 1100 4.324991 GTTCCAACCGGCCCTCGT 62.325 66.667 0.00 0.00 37.11 4.18
991 1101 3.835790 TTGTTCCAACCGGCCCTCG 62.836 63.158 0.00 0.00 38.88 4.63
1388 1581 1.509463 CGGACGCTAACCTGTAGCA 59.491 57.895 6.21 0.00 40.39 3.49
1413 1609 6.900299 GCACGAGAATTACAATTAAGCAGTAC 59.100 38.462 0.00 0.00 0.00 2.73
1414 1610 6.237728 CGCACGAGAATTACAATTAAGCAGTA 60.238 38.462 0.00 0.00 0.00 2.74
1415 1611 5.445939 CGCACGAGAATTACAATTAAGCAGT 60.446 40.000 0.00 0.00 0.00 4.40
1432 1628 1.078759 AGGAATCGAAAGCGCACGAG 61.079 55.000 23.02 8.23 41.63 4.18
1444 1641 3.682858 ACCACAAATACGACAAGGAATCG 59.317 43.478 0.00 0.00 45.17 3.34
1470 1667 3.715628 ATTAGGCAGGCATAAAAAGCG 57.284 42.857 2.31 0.00 0.00 4.68
1502 1706 1.978782 GCGAAATCGACCAAAAGCAAG 59.021 47.619 7.06 0.00 43.02 4.01
1505 1709 0.793104 CGGCGAAATCGACCAAAAGC 60.793 55.000 0.00 0.00 46.52 3.51
1506 1710 0.179200 CCGGCGAAATCGACCAAAAG 60.179 55.000 9.30 0.00 46.52 2.27
1507 1711 1.579084 CCCGGCGAAATCGACCAAAA 61.579 55.000 9.30 0.00 46.52 2.44
1508 1712 2.036006 CCCGGCGAAATCGACCAAA 61.036 57.895 9.30 0.00 46.52 3.28
1609 1814 4.675029 AAACGCGACCCCCACTCG 62.675 66.667 15.93 0.00 0.00 4.18
1623 1828 7.740519 AATCAACTAATTAAGCGATGCAAAC 57.259 32.000 0.00 0.00 0.00 2.93
1645 1860 6.437477 GGTTTCTCCCTGATTTTGTCCTAAAT 59.563 38.462 0.00 0.00 0.00 1.40
1690 1909 5.904362 AAACAGAGGATGCCTGTATTTTC 57.096 39.130 8.37 0.00 43.42 2.29
1723 1952 2.159071 TCCTCGTTGTTCGTTTTCCTCA 60.159 45.455 0.00 0.00 40.80 3.86
1733 1962 3.868077 CCATGATCTCTTCCTCGTTGTTC 59.132 47.826 0.00 0.00 0.00 3.18
1756 1985 7.308229 CCAGACTGACCAGTTCTTTAGATTTTG 60.308 40.741 3.32 0.00 42.66 2.44
1757 1986 6.712547 CCAGACTGACCAGTTCTTTAGATTTT 59.287 38.462 3.32 0.00 42.66 1.82
1758 1987 6.234177 CCAGACTGACCAGTTCTTTAGATTT 58.766 40.000 3.32 0.00 42.66 2.17
1759 1988 5.280215 CCCAGACTGACCAGTTCTTTAGATT 60.280 44.000 3.32 0.00 42.66 2.40
1760 1989 4.223923 CCCAGACTGACCAGTTCTTTAGAT 59.776 45.833 3.32 0.00 42.66 1.98
1764 2003 2.408565 TCCCAGACTGACCAGTTCTTT 58.591 47.619 3.32 0.00 42.66 2.52
1776 2015 6.154363 TGTTGTTCTTTGAATTTTCCCAGACT 59.846 34.615 0.00 0.00 0.00 3.24
1837 2082 4.566070 CCCTACGTTCCCCAAGTTTTATCA 60.566 45.833 0.00 0.00 0.00 2.15
1853 2098 1.340405 ACTCGTACACATCCCCTACGT 60.340 52.381 0.00 0.00 35.75 3.57
1865 2111 3.747529 TCATACTGACGTTGACTCGTACA 59.252 43.478 0.00 0.00 44.21 2.90
1891 2137 2.161609 GGGGAACTGCGATACAAGTTTG 59.838 50.000 0.00 0.00 0.00 2.93
1894 2140 1.276622 AGGGGAACTGCGATACAAGT 58.723 50.000 0.00 0.00 0.00 3.16
1897 2143 4.497291 AATAAAGGGGAACTGCGATACA 57.503 40.909 0.00 0.00 0.00 2.29
1898 2144 5.830000 AAAATAAAGGGGAACTGCGATAC 57.170 39.130 0.00 0.00 0.00 2.24
1958 2204 4.385447 ACTTGTTTAGTTTATTCGCGCGTA 59.615 37.500 30.98 22.31 31.29 4.42
1960 2206 3.728600 ACTTGTTTAGTTTATTCGCGCG 58.271 40.909 26.76 26.76 31.29 6.86
1971 2217 9.780186 ATCTTTCTACTTGCTTACTTGTTTAGT 57.220 29.630 0.00 0.00 41.04 2.24
2007 2253 0.179045 CATCCTAAGGGACGGCCAAG 60.179 60.000 11.00 2.46 45.43 3.61
2038 2284 9.019656 GCATACCCATGTCACCAAATATAATAA 57.980 33.333 0.00 0.00 34.40 1.40
2074 2320 2.217393 GCTAGCGAAGTCACATCAATCG 59.783 50.000 0.00 0.00 36.64 3.34
2093 2339 2.420022 ACAATTCAAAGATTAGCGCGCT 59.580 40.909 38.01 38.01 0.00 5.92
2097 2343 6.381801 ACCAAGAACAATTCAAAGATTAGCG 58.618 36.000 0.00 0.00 0.00 4.26
2101 2347 7.669427 TGCATACCAAGAACAATTCAAAGATT 58.331 30.769 0.00 0.00 0.00 2.40
2112 2358 7.994425 TCTTTCTTTATGCATACCAAGAACA 57.006 32.000 23.86 15.25 35.48 3.18
2120 2366 8.150945 TGGGAGTCTATCTTTCTTTATGCATAC 58.849 37.037 5.74 0.00 0.00 2.39
2159 2405 6.410942 AAGCAAGCAGTCCTCTTTATTTTT 57.589 33.333 0.00 0.00 0.00 1.94
2160 2406 6.410942 AAAGCAAGCAGTCCTCTTTATTTT 57.589 33.333 0.00 0.00 0.00 1.82
2161 2407 6.942576 TCTAAAGCAAGCAGTCCTCTTTATTT 59.057 34.615 0.00 0.00 31.39 1.40
2164 2410 5.012148 ACTCTAAAGCAAGCAGTCCTCTTTA 59.988 40.000 0.00 0.00 0.00 1.85
2184 2430 4.142381 GCAAAACAAGAACAGGTCAACTCT 60.142 41.667 0.00 0.00 0.00 3.24
2369 2631 9.995003 ATAAAATGTTTCCAAGTTGCAGAAATA 57.005 25.926 9.57 8.01 32.54 1.40
2464 2726 9.877178 CTCTTACGCTTATATTCCCATAAATCT 57.123 33.333 0.00 0.00 0.00 2.40
2473 2735 5.725325 AGGACCTCTTACGCTTATATTCC 57.275 43.478 0.00 0.00 0.00 3.01
2523 2794 7.099764 TGATTCTGACATAAAGGAAGACAGAC 58.900 38.462 0.00 0.00 33.64 3.51
2534 2805 7.835682 ACCATGATTCCTTGATTCTGACATAAA 59.164 33.333 0.00 0.00 0.00 1.40
2536 2807 6.769341 CACCATGATTCCTTGATTCTGACATA 59.231 38.462 0.00 0.00 0.00 2.29
2565 2836 5.477984 TCTGAAGCTATTGGCATTTCAGTTT 59.522 36.000 17.61 6.55 45.46 2.66
2587 2858 3.181479 GCCACGAAAAGGAAGGTTTTTCT 60.181 43.478 8.32 0.00 40.60 2.52
2697 2968 0.252479 ACTGCCTCTGCCAAGATGAG 59.748 55.000 0.00 0.00 36.33 2.90
2773 3044 6.753180 TCCAGCACTTCTAGCTAATTGATAG 58.247 40.000 0.00 0.00 41.14 2.08
2936 3207 1.271001 TGCTCCTCCAGATTGTGTGTG 60.271 52.381 0.00 0.00 0.00 3.82
3072 3343 4.935205 TCCATAGTTGTTCAGATGTTTCCG 59.065 41.667 0.00 0.00 0.00 4.30
3077 3348 4.019860 ACAGCTCCATAGTTGTTCAGATGT 60.020 41.667 0.00 0.00 43.85 3.06
3139 3410 1.259840 AACCATCAATGCTGCCACCC 61.260 55.000 0.00 0.00 0.00 4.61
3445 3889 3.487563 ACAAAATAACCGCTTAGCAGC 57.512 42.857 4.70 0.00 43.41 5.25
3479 3930 3.068590 ACAGAAAACCTGCTCCATGTTTG 59.931 43.478 0.00 0.00 46.81 2.93
3546 3997 5.252586 ACTGATAATTGATAGCCTGGCAT 57.747 39.130 22.65 12.20 0.00 4.40
3591 4042 5.416947 GGGCGAAGTAAAACTAGAAGATGA 58.583 41.667 0.00 0.00 0.00 2.92
3601 4052 3.004944 TCACATTTGGGGCGAAGTAAAAC 59.995 43.478 0.00 0.00 0.00 2.43
3614 4065 5.562307 GCTCAATGCTAGCTATCACATTTGG 60.562 44.000 17.23 9.59 37.01 3.28
3643 4094 7.499321 CAGTGTACCTGTGGTATAACAAAAA 57.501 36.000 0.00 0.00 40.54 1.94
3703 4154 3.489355 TGCTCAATCTCTTTGCAGGAAA 58.511 40.909 0.00 0.00 35.16 3.13
3861 4312 9.062524 AGCTACATTCAAAAGTAACACACAATA 57.937 29.630 0.00 0.00 0.00 1.90
3878 4332 2.224402 CCTTAGCTGGGGAGCTACATTC 60.224 54.545 0.00 0.00 45.81 2.67
3908 4362 6.092807 CAGTTTCTGCTGAAGGAAAGTATACC 59.907 42.308 6.13 0.00 38.70 2.73
4008 4462 5.349809 GGTGTCTTCTACCAACTGTATAGC 58.650 45.833 0.00 0.00 38.12 2.97
4017 4471 1.073284 GCAAGGGGTGTCTTCTACCAA 59.927 52.381 0.00 0.00 40.03 3.67
4049 4503 5.041191 AGCAAAACTCTCTTTCCTCTTCA 57.959 39.130 0.00 0.00 0.00 3.02
4082 4536 9.288576 CCATGAATACCAGAAGCAATTAGAATA 57.711 33.333 0.00 0.00 0.00 1.75
4202 4656 0.251297 CCCTTGACCATTGAGCCACA 60.251 55.000 0.00 0.00 0.00 4.17
4269 4723 2.877975 CCAGACATGGGGCAAGAAG 58.122 57.895 0.00 0.00 43.54 2.85
4284 4738 1.389609 GCCCAAGGATGCATGTCCAG 61.390 60.000 2.46 0.00 40.90 3.86
4295 4749 2.058125 TTGCGGTAGTTGCCCAAGGA 62.058 55.000 0.00 0.00 0.00 3.36
4325 4779 2.397413 CTTCTGAACCCCACGCTGGT 62.397 60.000 3.82 0.00 35.17 4.00
4337 4791 4.974645 TTTCTCTAACAGGCCTTCTGAA 57.025 40.909 0.00 0.00 46.18 3.02
4343 4797 3.507622 GCAACAATTTCTCTAACAGGCCT 59.492 43.478 0.00 0.00 0.00 5.19
4352 4806 3.953612 TCAACACCTGCAACAATTTCTCT 59.046 39.130 0.00 0.00 0.00 3.10
4418 4884 3.069158 CCAAATCTGGCCATTTCTGATCC 59.931 47.826 5.51 0.00 35.39 3.36
4419 4885 4.317671 CCAAATCTGGCCATTTCTGATC 57.682 45.455 5.51 0.00 35.39 2.92
4452 4918 1.142688 ACATCCCTTCCTGCCCTGTT 61.143 55.000 0.00 0.00 0.00 3.16
4463 4929 2.566746 ACCATCCTCTCAACATCCCTT 58.433 47.619 0.00 0.00 0.00 3.95
4482 4948 5.757808 GCTCTTCCAGAAGATCATCCTTTAC 59.242 44.000 10.41 0.00 45.40 2.01
4574 5043 3.477530 ACAGCAACTTTGTAACCTCCTC 58.522 45.455 0.00 0.00 0.00 3.71
4620 5097 6.069673 ACTCCATACAACCAATGATCAACCTA 60.070 38.462 0.00 0.00 0.00 3.08
4640 5117 5.534654 CCTGACCAAAGAAACAAATACTCCA 59.465 40.000 0.00 0.00 0.00 3.86
4709 5191 2.380410 CGGCGACTCGACCCAAAAG 61.380 63.158 0.00 0.00 0.00 2.27
4913 5398 5.416947 ACTGACCGACCTGATTTACATAAC 58.583 41.667 0.00 0.00 0.00 1.89
4972 5457 2.357637 ACGCAACAACAATGTAGCTGTT 59.642 40.909 0.00 0.00 39.40 3.16
4973 5458 1.946768 ACGCAACAACAATGTAGCTGT 59.053 42.857 0.00 0.00 39.40 4.40
4974 5459 2.032117 TGACGCAACAACAATGTAGCTG 60.032 45.455 0.00 0.00 39.40 4.24
4975 5460 2.217750 TGACGCAACAACAATGTAGCT 58.782 42.857 0.00 0.00 39.40 3.32
4976 5461 2.679355 TGACGCAACAACAATGTAGC 57.321 45.000 0.00 0.00 39.40 3.58
4987 5490 8.440833 ACTAGTATTATTTCTTGTTGACGCAAC 58.559 33.333 13.54 13.54 43.78 4.17
5014 5517 8.857098 AGGAAACATATACGCTCTACTTTATCA 58.143 33.333 0.00 0.00 0.00 2.15
5043 5547 9.542462 TGCTACTCCATGAATTAAGTATGTAAC 57.458 33.333 0.00 0.00 0.00 2.50
5055 5563 7.560991 CCTATAGAGAGATGCTACTCCATGAAT 59.439 40.741 0.00 0.00 37.60 2.57
5059 5567 6.217487 AGTCCTATAGAGAGATGCTACTCCAT 59.783 42.308 0.00 0.00 37.60 3.41
5154 5663 5.241506 AGTTCTTCAGCATCATTCGGAAAAA 59.758 36.000 0.00 0.00 0.00 1.94
5160 5669 2.417586 TGCAGTTCTTCAGCATCATTCG 59.582 45.455 0.00 0.00 33.75 3.34
5172 5681 6.595682 AGGCAGTATTATACATGCAGTTCTT 58.404 36.000 19.95 4.64 40.46 2.52
5214 5723 7.489435 TGTTGACTTTTACGAAAATTGATGCAA 59.511 29.630 0.00 0.00 0.00 4.08
5234 5743 5.505654 CCAGGTCAAAGTTACATGTGTTGAC 60.506 44.000 24.05 24.05 44.66 3.18
5236 5745 4.578516 TCCAGGTCAAAGTTACATGTGTTG 59.421 41.667 9.11 7.72 0.00 3.33
5248 5757 5.389859 TTGCAATGTAATCCAGGTCAAAG 57.610 39.130 0.00 0.00 0.00 2.77
5356 5870 4.355437 TGTGCATGTTCAACGTTTTTAGG 58.645 39.130 0.00 0.00 0.00 2.69
5451 5968 7.526142 AAAACCTTCCCTTCTTTGATACTTC 57.474 36.000 0.00 0.00 0.00 3.01
5454 5971 7.050970 ACAAAAACCTTCCCTTCTTTGATAC 57.949 36.000 0.00 0.00 0.00 2.24
5458 5975 4.097286 TCGACAAAAACCTTCCCTTCTTTG 59.903 41.667 0.00 0.00 0.00 2.77
5630 6147 3.252585 TAGTGAGGCTGCCCCCAGA 62.253 63.158 16.57 2.33 41.77 3.86
5662 6179 5.650266 CACCTTGTATAGATATCTCCGCTCT 59.350 44.000 8.95 0.00 0.00 4.09
5767 6285 2.035832 GCTTGCCTTCTTAGCACCAAAA 59.964 45.455 0.00 0.00 40.69 2.44
5833 6351 1.880027 GCGGTCTTGGTCTTGTTGAAT 59.120 47.619 0.00 0.00 0.00 2.57
5835 6353 0.534203 GGCGGTCTTGGTCTTGTTGA 60.534 55.000 0.00 0.00 0.00 3.18
5943 6462 9.668497 AATTTGAAGGGAGACAACTAGTATAAC 57.332 33.333 0.00 0.00 0.00 1.89
5946 6465 7.611855 CCAAATTTGAAGGGAGACAACTAGTAT 59.388 37.037 19.86 0.00 0.00 2.12
5996 6515 2.584835 TGGTCCTCTTCCCAAATGTG 57.415 50.000 0.00 0.00 0.00 3.21


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.