AutoCloner

Multiple sequence alignment - TraesCS5D01G488000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS5D01G488000	chr5D	100.000	2267	0	0	1	2267	522787154	522789420	0.000000e+00	4187
1	TraesCS5D01G488000	chr5D	91.619	2267	150	13	1	2263	517098991	517101221	0.000000e+00	3097
2	TraesCS5D01G488000	chr5D	91.524	2159	149	14	107	2263	452401407	452399281	0.000000e+00	2942
3	TraesCS5D01G488000	chr7D	94.536	1940	94	8	4	1941	411315788	411313859	0.000000e+00	2985
4	TraesCS5D01G488000	chr7D	89.578	2274	185	19	1	2265	29611219	29613449	0.000000e+00	2839
5	TraesCS5D01G488000	chr7D	87.171	304	36	3	1962	2264	411313873	411313572	2.160000e-90	342
6	TraesCS5D01G488000	chr1D	89.654	2281	179	37	1	2263	92054249	92056490	0.000000e+00	2852
7	TraesCS5D01G488000	chr2D	90.771	2113	160	21	161	2267	314480265	314478182	0.000000e+00	2789
8	TraesCS5D01G488000	chr3D	90.042	2129	159	34	60	2177	445802580	445804666	0.000000e+00	2708
9	TraesCS5D01G488000	chr3D	79.825	456	58	22	1746	2193	416000246	416000675	3.660000e-78	302
10	TraesCS5D01G488000	chr3B	89.617	2167	162	25	4	2160	738417839	738419952	0.000000e+00	2697
11	TraesCS5D01G488000	chr3B	87.979	2271	232	23	10	2264	213720117	213717872	0.000000e+00	2643
12	TraesCS5D01G488000	chr3B	86.681	2275	211	39	6	2263	712581449	712579250	0.000000e+00	2438
13	TraesCS5D01G488000	chr5A	87.566	2276	219	35	7	2264	602717948	602720177	0.000000e+00	2577
14	TraesCS5D01G488000	chr2B	90.150	1939	162	13	1	1928	747523226	747525146	0.000000e+00	2495
15	TraesCS5D01G488000	chr7B	87.544	1967	189	24	1	1939	122756885	122758823	0.000000e+00	2224
16	TraesCS5D01G488000	chr4D	86.167	1800	202	29	1	1789	343945634	343947397	0.000000e+00	1901
17	TraesCS5D01G488000	chr5B	82.542	716	100	17	1539	2249	595180761	595180066	6.930000e-170	606
18	TraesCS5D01G488000	chr1A	84.248	419	54	8	1659	2075	215664137	215663729	4.540000e-107	398

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS5D01G488000	chr5D	522787154	522789420	2266	False	4187.0	4187	100.0000	1	2267	1	chr5D.!!$F2	2266
1	TraesCS5D01G488000	chr5D	517098991	517101221	2230	False	3097.0	3097	91.6190	1	2263	1	chr5D.!!$F1	2262
2	TraesCS5D01G488000	chr5D	452399281	452401407	2126	True	2942.0	2942	91.5240	107	2263	1	chr5D.!!$R1	2156
3	TraesCS5D01G488000	chr7D	29611219	29613449	2230	False	2839.0	2839	89.5780	1	2265	1	chr7D.!!$F1	2264
4	TraesCS5D01G488000	chr7D	411313572	411315788	2216	True	1663.5	2985	90.8535	4	2264	2	chr7D.!!$R1	2260
5	TraesCS5D01G488000	chr1D	92054249	92056490	2241	False	2852.0	2852	89.6540	1	2263	1	chr1D.!!$F1	2262
6	TraesCS5D01G488000	chr2D	314478182	314480265	2083	True	2789.0	2789	90.7710	161	2267	1	chr2D.!!$R1	2106
7	TraesCS5D01G488000	chr3D	445802580	445804666	2086	False	2708.0	2708	90.0420	60	2177	1	chr3D.!!$F2	2117
8	TraesCS5D01G488000	chr3B	738417839	738419952	2113	False	2697.0	2697	89.6170	4	2160	1	chr3B.!!$F1	2156
9	TraesCS5D01G488000	chr3B	213717872	213720117	2245	True	2643.0	2643	87.9790	10	2264	1	chr3B.!!$R1	2254
10	TraesCS5D01G488000	chr3B	712579250	712581449	2199	True	2438.0	2438	86.6810	6	2263	1	chr3B.!!$R2	2257
11	TraesCS5D01G488000	chr5A	602717948	602720177	2229	False	2577.0	2577	87.5660	7	2264	1	chr5A.!!$F1	2257
12	TraesCS5D01G488000	chr2B	747523226	747525146	1920	False	2495.0	2495	90.1500	1	1928	1	chr2B.!!$F1	1927
13	TraesCS5D01G488000	chr7B	122756885	122758823	1938	False	2224.0	2224	87.5440	1	1939	1	chr7B.!!$F1	1938
14	TraesCS5D01G488000	chr4D	343945634	343947397	1763	False	1901.0	1901	86.1670	1	1789	1	chr4D.!!$F1	1788
15	TraesCS5D01G488000	chr5B	595180066	595180761	695	True	606.0	606	82.5420	1539	2249	1	chr5B.!!$R1	710

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
256	257	0.107263	TATCATTGGCCTTGCTCGCA	60.107	50.0	3.32	0.0	0.0	5.1	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1429	1490	0.036875	ACAACCACTGCCTCCTTAGC	59.963	55.0	0.0	0.0	0.0	3.09	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
185	186	0.321919	TGACGTACGGTGGAGTAGCT	60.322	55.000	21.06	0.00	0.00	3.32
255	256	0.308993	GTATCATTGGCCTTGCTCGC	59.691	55.000	3.32	0.00	0.00	5.03
256	257	0.107263	TATCATTGGCCTTGCTCGCA	60.107	50.000	3.32	0.00	0.00	5.10
257	258	0.754217	ATCATTGGCCTTGCTCGCAT	60.754	50.000	3.32	0.00	0.00	4.73
258	259	1.226859	CATTGGCCTTGCTCGCATG	60.227	57.895	3.32	0.00	0.00	4.06
259	260	1.679977	ATTGGCCTTGCTCGCATGT	60.680	52.632	3.32	0.00	0.00	3.21
260	261	1.940883	ATTGGCCTTGCTCGCATGTG	61.941	55.000	3.32	0.00	0.00	3.21
261	262	2.747460	GGCCTTGCTCGCATGTGA	60.747	61.111	8.98	8.98	0.00	3.58
262	263	2.117156	GGCCTTGCTCGCATGTGAT	61.117	57.895	9.87	0.00	0.00	3.06
263	264	1.063649	GCCTTGCTCGCATGTGATG	59.936	57.895	9.87	5.47	0.00	3.07
264	265	1.371337	GCCTTGCTCGCATGTGATGA	61.371	55.000	9.87	0.00	0.00	2.92
265	266	0.376152	CCTTGCTCGCATGTGATGAC	59.624	55.000	9.87	3.40	0.00	3.06
266	267	0.376152	CTTGCTCGCATGTGATGACC	59.624	55.000	9.87	0.00	0.00	4.02
267	268	1.360931	TTGCTCGCATGTGATGACCG	61.361	55.000	9.87	0.00	0.00	4.79
268	269	1.811266	GCTCGCATGTGATGACCGT	60.811	57.895	9.87	0.00	0.00	4.83
269	270	1.756375	GCTCGCATGTGATGACCGTC	61.756	60.000	9.87	0.00	0.00	4.79
270	271	1.474648	CTCGCATGTGATGACCGTCG	61.475	60.000	9.87	0.00	0.00	5.12
271	272	2.703409	GCATGTGATGACCGTCGC	59.297	61.111	0.00	0.00	0.00	5.19
272	273	2.100031	GCATGTGATGACCGTCGCA	61.100	57.895	7.79	7.79	42.23	5.10
273	274	1.634757	GCATGTGATGACCGTCGCAA	61.635	55.000	9.21	0.00	41.45	4.85
274	275	0.371301	CATGTGATGACCGTCGCAAG	59.629	55.000	9.21	2.22	41.45	4.01
275	276	0.740868	ATGTGATGACCGTCGCAAGG	60.741	55.000	9.21	0.00	41.45	3.61
276	277	1.374252	GTGATGACCGTCGCAAGGT	60.374	57.895	0.00	0.00	46.16	3.50
277	278	0.949105	GTGATGACCGTCGCAAGGTT	60.949	55.000	0.00	0.00	43.01	3.50
344	368	2.519377	TCACATTGGAACGAACGAGT	57.481	45.000	0.14	0.00	0.00	4.18
356	380	0.165944	GAACGAGTTTGACATGGGCG	59.834	55.000	0.00	0.00	0.00	6.13
380	404	1.555533	AGGTTTCATCCCTTCCTCGAC	59.444	52.381	0.00	0.00	0.00	4.20
404	428	1.550524	TCACAGTGGCCTCAGTATGAC	59.449	52.381	3.32	0.00	42.56	3.06
478	508	6.330514	AGAAGAAGAAAGAAGAGGTTTAGGGT	59.669	38.462	0.00	0.00	0.00	4.34
550	580	1.076777	ATTTCATGGAGGCACCGGG	60.077	57.895	6.32	0.00	42.61	5.73
569	599	2.684881	GGGCATCAATAGTTGTGGTCAG	59.315	50.000	0.00	0.00	0.00	3.51
636	667	2.047274	CGATGCCAACACTCCGGT	60.047	61.111	0.00	0.00	0.00	5.28
679	710	1.978580	CAAAGAGGAGGTACCAGTGGT	59.021	52.381	20.91	20.91	42.04	4.16
780	826	3.215975	GACGAGGAGGCACTATTAGAGT	58.784	50.000	0.00	0.00	41.55	3.24
832	878	1.379443	TGGCGGTGATCGTAGGACT	60.379	57.895	0.00	0.00	41.72	3.85
1027	1084	1.895020	TTCCGGTTCCATGACGAGGG	61.895	60.000	0.00	0.00	0.00	4.30
1032	1090	4.731853	TCCATGACGAGGGCCCCA	62.732	66.667	21.43	10.04	0.00	4.96
1097	1155	4.508662	GAGTTGGATAAGGTGAAGGACAG	58.491	47.826	0.00	0.00	0.00	3.51
1171	1229	3.295093	TCCACCAACTGCAAGAAATCAA	58.705	40.909	0.00	0.00	37.43	2.57
1276	1334	6.265577	CCAGTAAGTTGTTGAAGTTCAAAGG	58.734	40.000	19.63	7.22	38.22	3.11
1406	1467	3.754850	TCAAGATGTGCCAGAAGATGTTG	59.245	43.478	0.00	0.00	0.00	3.33
1429	1490	6.845302	TGAAAAAGATCAACATCGAGATTGG	58.155	36.000	10.58	0.00	33.75	3.16
1472	1533	3.244665	TGAAGAAGCATTTCAGAGAGGCA	60.245	43.478	0.00	0.00	35.70	4.75
1536	1599	1.305718	GTGAGGAGGAGAGGGCACT	60.306	63.158	0.00	0.00	0.00	4.40
1554	1617	3.867600	GCACTCAAGGAGAAGATTGCTCA	60.868	47.826	0.00	0.00	37.43	4.26
1704	1829	6.796426	TGAACTATGTCTTCGATTCGAGAAT	58.204	36.000	8.98	0.00	37.14	2.40
1813	1960	9.650539	TTTGATTTCTGAAACTTGTGATGAAAA	57.349	25.926	4.73	0.00	0.00	2.29
1814	1961	8.633075	TGATTTCTGAAACTTGTGATGAAAAC	57.367	30.769	4.73	0.00	0.00	2.43
1815	1962	8.469200	TGATTTCTGAAACTTGTGATGAAAACT	58.531	29.630	4.73	0.00	0.00	2.66
1818	1965	6.486248	TCTGAAACTTGTGATGAAAACTTCG	58.514	36.000	0.00	0.00	0.00	3.79
1819	1966	5.577835	TGAAACTTGTGATGAAAACTTCGG	58.422	37.500	0.00	0.00	0.00	4.30
1820	1967	5.124776	TGAAACTTGTGATGAAAACTTCGGT	59.875	36.000	0.00	0.00	0.00	4.69
1821	1968	4.813296	ACTTGTGATGAAAACTTCGGTC	57.187	40.909	0.00	0.00	0.00	4.79
1822	1969	3.564225	ACTTGTGATGAAAACTTCGGTCC	59.436	43.478	0.00	0.00	0.00	4.46
1823	1970	2.139917	TGTGATGAAAACTTCGGTCCG	58.860	47.619	4.39	4.39	0.00	4.79
1824	1971	1.136057	GTGATGAAAACTTCGGTCCGC	60.136	52.381	6.34	0.00	0.00	5.54
1825	1972	1.270625	TGATGAAAACTTCGGTCCGCT	60.271	47.619	6.34	0.00	0.00	5.52
1826	1973	1.393883	GATGAAAACTTCGGTCCGCTC	59.606	52.381	6.34	0.00	0.00	5.03
1827	1974	0.391597	TGAAAACTTCGGTCCGCTCT	59.608	50.000	6.34	0.00	0.00	4.09
1828	1975	0.790814	GAAAACTTCGGTCCGCTCTG	59.209	55.000	6.34	0.00	0.00	3.35
1829	1976	0.391597	AAAACTTCGGTCCGCTCTGA	59.608	50.000	6.34	0.00	0.00	3.27
1830	1977	0.608640	AAACTTCGGTCCGCTCTGAT	59.391	50.000	6.34	0.00	0.00	2.90
1831	1978	0.108615	AACTTCGGTCCGCTCTGATG	60.109	55.000	6.34	0.00	0.00	3.07
1832	1979	0.965866	ACTTCGGTCCGCTCTGATGA	60.966	55.000	6.34	0.00	0.00	2.92
1833	1980	0.173481	CTTCGGTCCGCTCTGATGAA	59.827	55.000	6.34	0.00	0.00	2.57
1834	1981	0.606096	TTCGGTCCGCTCTGATGAAA	59.394	50.000	6.34	0.00	0.00	2.69
1835	1982	0.606096	TCGGTCCGCTCTGATGAAAA	59.394	50.000	6.34	0.00	0.00	2.29
1836	1983	0.721718	CGGTCCGCTCTGATGAAAAC	59.278	55.000	0.00	0.00	0.00	2.43
1837	1984	1.808411	GGTCCGCTCTGATGAAAACA	58.192	50.000	0.00	0.00	0.00	2.83
1838	1985	2.359900	GGTCCGCTCTGATGAAAACAT	58.640	47.619	0.00	0.00	0.00	2.71
1840	1987	3.191371	GGTCCGCTCTGATGAAAACATTT	59.809	43.478	0.00	0.00	0.00	2.32
1841	1988	4.161333	GTCCGCTCTGATGAAAACATTTG	58.839	43.478	0.00	0.00	0.00	2.32
1846	1993	5.108141	CGCTCTGATGAAAACATTTGTTGTG	60.108	40.000	0.00	0.00	38.99	3.33
1847	1994	5.332808	GCTCTGATGAAAACATTTGTTGTGC	60.333	40.000	0.00	0.00	38.99	4.57
1860	2007	0.593263	GTTGTGCTGCTGTTGCTGTC	60.593	55.000	0.00	0.00	39.81	3.51
1933	2137	0.036732	CTCTGCTTTGCACCCTACCA	59.963	55.000	0.00	0.00	33.79	3.25
1944	2148	0.416231	ACCCTACCACCAGAAGCCTA	59.584	55.000	0.00	0.00	0.00	3.93
1945	2149	1.009675	ACCCTACCACCAGAAGCCTAT	59.990	52.381	0.00	0.00	0.00	2.57
1973	2177	2.367567	GGATATGAAACCCTACTGCCGA	59.632	50.000	0.00	0.00	0.00	5.54
2100	2407	1.071128	CCTATGGCCTGCTCTGCTC	59.929	63.158	3.32	0.00	0.00	4.26
2107	2414	1.664873	CCTGCTCTGCTCCCTATCG	59.335	63.158	0.00	0.00	0.00	2.92
2202	2509	3.854669	CCCTACGGCCTGCTCTGG	61.855	72.222	0.00	0.00	0.00	3.86
2211	2518	2.433838	CTGCTCTGGTGCCTGTCG	60.434	66.667	0.00	0.00	0.00	4.35

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
2	3	1.308998	CTATCCATTTGGCCGTCACC	58.691	55.000	0.00	0.00	34.44	4.02
23	24	5.643379	TGAAGGGAAATTCCATTTTCTCG	57.357	39.130	13.44	0.00	41.11	4.04
50	51	2.358957	TGATGCTTCAACCAATCCTCG	58.641	47.619	0.00	0.00	0.00	4.63
126	127	0.036010	CCTGGCTCATCGACTTGGTT	60.036	55.000	0.00	0.00	0.00	3.67
150	151	0.517316	GTCATGTCGTCCCTTGTTGC	59.483	55.000	0.00	0.00	0.00	4.17
255	256	0.371301	CTTGCGACGGTCATCACATG	59.629	55.000	9.10	0.00	0.00	3.21
256	257	0.740868	CCTTGCGACGGTCATCACAT	60.741	55.000	9.10	0.00	0.00	3.21
257	258	1.374125	CCTTGCGACGGTCATCACA	60.374	57.895	9.10	0.00	0.00	3.58
258	259	0.949105	AACCTTGCGACGGTCATCAC	60.949	55.000	9.10	0.00	32.46	3.06
259	260	0.669318	GAACCTTGCGACGGTCATCA	60.669	55.000	9.10	2.56	32.46	3.07
260	261	0.669318	TGAACCTTGCGACGGTCATC	60.669	55.000	9.10	0.00	32.46	2.92
261	262	0.670546	CTGAACCTTGCGACGGTCAT	60.671	55.000	9.10	0.00	32.46	3.06
262	263	1.300620	CTGAACCTTGCGACGGTCA	60.301	57.895	9.10	0.00	32.46	4.02
263	264	0.599204	TTCTGAACCTTGCGACGGTC	60.599	55.000	0.00	0.00	32.46	4.79
264	265	0.179067	TTTCTGAACCTTGCGACGGT	60.179	50.000	0.00	0.00	35.97	4.83
265	266	0.234884	GTTTCTGAACCTTGCGACGG	59.765	55.000	0.00	0.00	0.00	4.79
266	267	1.217882	AGTTTCTGAACCTTGCGACG	58.782	50.000	0.00	0.00	36.39	5.12
267	268	2.612212	TCAAGTTTCTGAACCTTGCGAC	59.388	45.455	19.26	1.11	36.39	5.19
268	269	2.912771	TCAAGTTTCTGAACCTTGCGA	58.087	42.857	19.26	4.36	36.39	5.10
269	270	3.363178	GTTCAAGTTTCTGAACCTTGCG	58.637	45.455	19.26	1.66	46.29	4.85
344	368	1.077787	CCTAGGCGCCCATGTCAAA	60.078	57.895	26.15	0.00	0.00	2.69
356	380	1.847088	AGGAAGGGATGAAACCTAGGC	59.153	52.381	9.30	0.00	37.35	3.93
380	404	1.004080	CTGAGGCCACTGTGACTGG	60.004	63.158	9.86	0.00	0.00	4.00
478	508	3.969312	TCCAGCTAGATCATCCATGTCAA	59.031	43.478	0.00	0.00	0.00	3.18
550	580	3.753272	ACACTGACCACAACTATTGATGC	59.247	43.478	0.00	0.00	0.00	3.91
569	599	3.986006	TGTCCCGGCTCGTCACAC	61.986	66.667	0.00	0.00	0.00	3.82
636	667	1.071071	CACCCGTTTGACTAGTGGGAA	59.929	52.381	19.48	0.81	42.77	3.97
679	710	1.064906	CCACTCCTACCTCCTCGTGTA	60.065	57.143	0.00	0.00	0.00	2.90
818	864	2.885894	CCCTTCTAGTCCTACGATCACC	59.114	54.545	0.00	0.00	0.00	4.02
822	868	4.246712	TCAACCCTTCTAGTCCTACGAT	57.753	45.455	0.00	0.00	0.00	3.73
832	878	3.967987	GCCTTCCTCTATCAACCCTTCTA	59.032	47.826	0.00	0.00	0.00	2.10
1057	1115	1.594293	CGGCGTCTGTCCACTTGTT	60.594	57.895	0.00	0.00	0.00	2.83
1097	1155	6.649973	CCAACATGATGGAGTTCTCATATCTC	59.350	42.308	16.73	0.00	43.54	2.75
1171	1229	7.694093	ACAAAATATCTTCTTCCTTCTGTCCT	58.306	34.615	0.00	0.00	0.00	3.85
1276	1334	4.248058	AGTTGTAGCAACGGTTGTATACC	58.752	43.478	20.92	12.22	44.03	2.73
1326	1387	5.108480	GGCGACTACGTATGAATAAAGAACG	60.108	44.000	0.00	0.00	41.98	3.95
1406	1467	5.741040	GCCAATCTCGATGTTGATCTTTTTC	59.259	40.000	10.49	0.00	0.00	2.29
1429	1490	0.036875	ACAACCACTGCCTCCTTAGC	59.963	55.000	0.00	0.00	0.00	3.09
1472	1533	0.817654	TCACGACGCTCTTCATCCAT	59.182	50.000	0.00	0.00	0.00	3.41
1536	1599	4.831674	TGATGAGCAATCTTCTCCTTGA	57.168	40.909	1.66	0.00	36.15	3.02
1554	1617	4.623647	GCTTTCTTGCTCTCTCCTCTTGAT	60.624	45.833	0.00	0.00	0.00	2.57
1579	1644	3.793144	GCTTCACGAGCCCTTGCG	61.793	66.667	0.00	0.00	46.01	4.85
1704	1829	6.419484	TCAAAGACATAGTTCTTCACAGGA	57.581	37.500	0.00	0.00	34.60	3.86
1813	1960	0.965866	TCATCAGAGCGGACCGAAGT	60.966	55.000	20.50	0.00	0.00	3.01
1814	1961	0.173481	TTCATCAGAGCGGACCGAAG	59.827	55.000	20.50	3.39	0.00	3.79
1815	1962	0.606096	TTTCATCAGAGCGGACCGAA	59.394	50.000	20.50	0.00	0.00	4.30
1818	1965	1.808411	TGTTTTCATCAGAGCGGACC	58.192	50.000	0.00	0.00	0.00	4.46
1819	1966	4.161333	CAAATGTTTTCATCAGAGCGGAC	58.839	43.478	0.00	0.00	39.94	4.79
1820	1967	3.820467	ACAAATGTTTTCATCAGAGCGGA	59.180	39.130	0.00	0.00	39.94	5.54
1821	1968	4.164822	ACAAATGTTTTCATCAGAGCGG	57.835	40.909	0.00	0.00	39.94	5.52
1822	1969	4.977963	ACAACAAATGTTTTCATCAGAGCG	59.022	37.500	0.00	0.00	40.06	5.03
1823	1970	5.332808	GCACAACAAATGTTTTCATCAGAGC	60.333	40.000	0.00	0.00	41.46	4.09
1824	1971	5.981315	AGCACAACAAATGTTTTCATCAGAG	59.019	36.000	0.00	0.00	41.46	3.35
1825	1972	5.749588	CAGCACAACAAATGTTTTCATCAGA	59.250	36.000	0.00	0.00	41.46	3.27
1826	1973	5.557514	GCAGCACAACAAATGTTTTCATCAG	60.558	40.000	0.00	0.00	41.46	2.90
1827	1974	4.270566	GCAGCACAACAAATGTTTTCATCA	59.729	37.500	0.00	0.00	41.46	3.07
1828	1975	4.508861	AGCAGCACAACAAATGTTTTCATC	59.491	37.500	0.00	0.00	41.46	2.92
1829	1976	4.271533	CAGCAGCACAACAAATGTTTTCAT	59.728	37.500	0.00	0.00	41.46	2.57
1830	1977	3.617706	CAGCAGCACAACAAATGTTTTCA	59.382	39.130	0.00	0.00	41.46	2.69
1831	1978	3.618150	ACAGCAGCACAACAAATGTTTTC	59.382	39.130	0.00	0.00	41.46	2.29
1832	1979	3.598299	ACAGCAGCACAACAAATGTTTT	58.402	36.364	0.00	0.00	41.46	2.43
1833	1980	3.249986	ACAGCAGCACAACAAATGTTT	57.750	38.095	0.00	0.00	41.46	2.83
1834	1981	2.931325	CAACAGCAGCACAACAAATGTT	59.069	40.909	0.00	0.00	41.46	2.71
1835	1982	2.542597	CAACAGCAGCACAACAAATGT	58.457	42.857	0.00	0.00	45.34	2.71
1836	1983	1.259507	GCAACAGCAGCACAACAAATG	59.740	47.619	0.00	0.00	0.00	2.32
1837	1984	1.137479	AGCAACAGCAGCACAACAAAT	59.863	42.857	0.00	0.00	0.00	2.32
1838	1985	0.531657	AGCAACAGCAGCACAACAAA	59.468	45.000	0.00	0.00	0.00	2.83
1840	1987	1.314534	ACAGCAACAGCAGCACAACA	61.315	50.000	0.00	0.00	0.00	3.33
1841	1988	0.593263	GACAGCAACAGCAGCACAAC	60.593	55.000	0.00	0.00	0.00	3.32
1846	1993	0.317603	CAAGTGACAGCAACAGCAGC	60.318	55.000	0.00	0.00	0.00	5.25
1847	1994	1.019673	ACAAGTGACAGCAACAGCAG	58.980	50.000	0.00	0.00	0.00	4.24
1860	2007	2.166254	AGACAGGCCAAACAAACAAGTG	59.834	45.455	5.01	0.00	0.00	3.16
1933	2137	0.753262	CTACCGCATAGGCTTCTGGT	59.247	55.000	0.00	0.00	46.52	4.00
1944	2148	2.979678	AGGGTTTCATATCCTACCGCAT	59.020	45.455	0.00	0.00	0.00	4.73
1945	2149	2.404559	AGGGTTTCATATCCTACCGCA	58.595	47.619	0.00	0.00	0.00	5.69
1973	2177	2.612493	AACCTACCGCCATGCCCTT	61.612	57.895	0.00	0.00	0.00	3.95
2061	2368	2.828549	GCCAACCCTACCGCCATG	60.829	66.667	0.00	0.00	0.00	3.66
2202	2509	1.092921	TTTGGTCACACGACAGGCAC	61.093	55.000	0.00	0.00	44.54	5.01

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.