Multiple sequence alignment - TraesCS5D01G487200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G487200 chr5D 100.000 4662 0 0 1 4662 522158513 522153852 0.000000e+00 8610.0
1 TraesCS5D01G487200 chr5D 82.817 1711 241 30 2304 3995 521865744 521867420 0.000000e+00 1482.0
2 TraesCS5D01G487200 chr5D 84.456 1499 202 20 2303 3788 521836833 521838313 0.000000e+00 1448.0
3 TraesCS5D01G487200 chr5D 85.444 1374 184 10 2307 3668 521844070 521845439 0.000000e+00 1415.0
4 TraesCS5D01G487200 chr5D 93.125 160 5 4 4073 4228 521839366 521839523 3.630000e-56 230.0
5 TraesCS5D01G487200 chr5D 93.077 130 6 3 4275 4401 521839649 521839778 2.210000e-43 187.0
6 TraesCS5D01G487200 chr5D 89.565 115 8 4 4305 4415 446119167 446119053 4.860000e-30 143.0
7 TraesCS5D01G487200 chr5D 84.828 145 7 5 3827 3971 521839182 521839311 1.050000e-26 132.0
8 TraesCS5D01G487200 chr5B 94.711 2817 83 19 1889 4662 658460760 658457967 0.000000e+00 4316.0
9 TraesCS5D01G487200 chr5B 83.909 1678 225 24 2303 3970 658152710 658154352 0.000000e+00 1561.0
10 TraesCS5D01G487200 chr5B 83.343 1711 234 28 2304 3995 658172116 658173794 0.000000e+00 1533.0
11 TraesCS5D01G487200 chr5B 82.407 1728 233 33 2307 3999 658368740 658370431 0.000000e+00 1441.0
12 TraesCS5D01G487200 chr5B 94.231 884 45 3 984 1864 658461630 658460750 0.000000e+00 1345.0
13 TraesCS5D01G487200 chr5B 85.660 795 100 8 2304 3090 658372351 658373139 0.000000e+00 824.0
14 TraesCS5D01G487200 chr5B 91.051 514 17 9 410 906 658462128 658461627 0.000000e+00 667.0
15 TraesCS5D01G487200 chr5B 86.532 297 38 2 95 389 92679002 92679298 4.500000e-85 326.0
16 TraesCS5D01G487200 chr5B 82.097 391 40 22 4275 4648 658145658 658146035 1.630000e-79 307.0
17 TraesCS5D01G487200 chr5B 89.394 132 9 4 4275 4401 658154529 658154660 1.340000e-35 161.0
18 TraesCS5D01G487200 chr5B 94.949 99 4 1 4308 4406 658160112 658160209 2.250000e-33 154.0
19 TraesCS5D01G487200 chr5A 94.303 2159 91 6 1526 3674 650297756 650295620 0.000000e+00 3277.0
20 TraesCS5D01G487200 chr5A 85.183 1964 228 28 2303 4231 650141900 650143835 0.000000e+00 1956.0
21 TraesCS5D01G487200 chr5A 86.164 1366 180 6 2307 3663 650159858 650161223 0.000000e+00 1467.0
22 TraesCS5D01G487200 chr5A 91.980 985 36 21 489 1457 650298712 650297755 0.000000e+00 1341.0
23 TraesCS5D01G487200 chr5A 91.977 349 23 5 4316 4662 650290106 650289761 7.010000e-133 484.0
24 TraesCS5D01G487200 chr5A 90.647 139 12 1 246 383 495102493 495102355 2.870000e-42 183.0
25 TraesCS5D01G487200 chr5A 90.833 120 6 2 4283 4401 650144032 650144147 6.250000e-34 156.0
26 TraesCS5D01G487200 chr1B 85.751 386 48 6 6 387 633329948 633330330 7.270000e-108 401.0
27 TraesCS5D01G487200 chr3B 88.323 334 35 4 59 390 9089680 9090011 9.400000e-107 398.0
28 TraesCS5D01G487200 chr1D 85.667 300 33 7 95 390 374738888 374738595 1.630000e-79 307.0
29 TraesCS5D01G487200 chr7B 85.284 299 36 5 95 390 485077995 485078288 7.580000e-78 302.0
30 TraesCS5D01G487200 chr4B 84.314 306 37 8 95 397 72889859 72890156 5.900000e-74 289.0
31 TraesCS5D01G487200 chr4B 85.714 189 25 2 200 387 446768409 446768596 1.020000e-46 198.0
32 TraesCS5D01G487200 chr3A 83.333 264 36 6 6 266 745818532 745818274 2.170000e-58 237.0
33 TraesCS5D01G487200 chr7D 90.517 116 4 7 4297 4408 598597204 598597092 3.760000e-31 147.0
34 TraesCS5D01G487200 chr3D 90.698 86 8 0 305 390 297592176 297592091 1.060000e-21 115.0
35 TraesCS5D01G487200 chr7A 95.349 43 1 1 1080 1122 601850877 601850918 3.010000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G487200 chr5D 522153852 522158513 4661 True 8610.000000 8610 100.0000 1 4662 1 chr5D.!!$R2 4661
1 TraesCS5D01G487200 chr5D 521865744 521867420 1676 False 1482.000000 1482 82.8170 2304 3995 1 chr5D.!!$F2 1691
2 TraesCS5D01G487200 chr5D 521844070 521845439 1369 False 1415.000000 1415 85.4440 2307 3668 1 chr5D.!!$F1 1361
3 TraesCS5D01G487200 chr5D 521836833 521839778 2945 False 499.250000 1448 88.8715 2303 4401 4 chr5D.!!$F3 2098
4 TraesCS5D01G487200 chr5B 658457967 658462128 4161 True 2109.333333 4316 93.3310 410 4662 3 chr5B.!!$R1 4252
5 TraesCS5D01G487200 chr5B 658172116 658173794 1678 False 1533.000000 1533 83.3430 2304 3995 1 chr5B.!!$F4 1691
6 TraesCS5D01G487200 chr5B 658368740 658373139 4399 False 1132.500000 1441 84.0335 2304 3999 2 chr5B.!!$F6 1695
7 TraesCS5D01G487200 chr5B 658152710 658154660 1950 False 861.000000 1561 86.6515 2303 4401 2 chr5B.!!$F5 2098
8 TraesCS5D01G487200 chr5A 650295620 650298712 3092 True 2309.000000 3277 93.1415 489 3674 2 chr5A.!!$R3 3185
9 TraesCS5D01G487200 chr5A 650159858 650161223 1365 False 1467.000000 1467 86.1640 2307 3663 1 chr5A.!!$F1 1356
10 TraesCS5D01G487200 chr5A 650141900 650144147 2247 False 1056.000000 1956 88.0080 2303 4401 2 chr5A.!!$F2 2098

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
264 265 0.028110 GATCGAATTCCAGGTTGCGC 59.972 55.0 0.00 0.00 0.00 6.09 F
326 327 0.034477 AGGTTTACTCCAATGGGCCG 60.034 55.0 0.00 0.00 0.00 6.13 F
786 803 0.039618 TTGGCAGTTCCTCCCCAATC 59.960 55.0 0.00 0.00 32.73 2.67 F
1523 1544 0.182061 ACATCGGCAGCAATCAGGAT 59.818 50.0 0.00 0.00 0.00 3.24 F
2980 3026 0.893727 TCTCCGTGTGCTACAGCTCA 60.894 55.0 2.44 2.21 41.53 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1565 1586 0.538746 AACCGGATTTGCTCCCGTTT 60.539 50.000 9.46 0.0 41.07 3.60 R
2303 2331 1.550976 GTCGTCCTCCATTGGTCTCTT 59.449 52.381 1.86 0.0 0.00 2.85 R
2980 3026 4.387026 TTCCATCCATGTTCCAGTCTTT 57.613 40.909 0.00 0.0 0.00 2.52 R
3172 3218 0.031178 CCTTGTTGCGCTTTGCTTCT 59.969 50.000 9.73 0.0 46.63 2.85 R
4437 7555 1.065491 TGCATTAGCCCGTCAGAATGT 60.065 47.619 0.00 0.0 41.13 2.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 9.710900 ATCTTCATAATTCCAAAAAGTTGTTCC 57.289 29.630 0.00 0.00 32.40 3.62
35 36 8.700051 TCTTCATAATTCCAAAAAGTTGTTCCA 58.300 29.630 0.00 0.00 32.40 3.53
36 37 9.323985 CTTCATAATTCCAAAAAGTTGTTCCAA 57.676 29.630 0.00 0.00 32.40 3.53
37 38 8.885494 TCATAATTCCAAAAAGTTGTTCCAAG 57.115 30.769 0.00 0.00 32.40 3.61
38 39 8.482128 TCATAATTCCAAAAAGTTGTTCCAAGT 58.518 29.630 0.00 0.00 32.40 3.16
39 40 9.108284 CATAATTCCAAAAAGTTGTTCCAAGTT 57.892 29.630 0.00 0.00 32.40 2.66
40 41 7.994425 AATTCCAAAAAGTTGTTCCAAGTTT 57.006 28.000 4.39 4.39 32.40 2.66
41 42 7.994425 ATTCCAAAAAGTTGTTCCAAGTTTT 57.006 28.000 13.88 13.88 35.09 2.43
42 43 7.428282 TTCCAAAAAGTTGTTCCAAGTTTTC 57.572 32.000 17.92 0.00 33.16 2.29
43 44 6.525629 TCCAAAAAGTTGTTCCAAGTTTTCA 58.474 32.000 17.92 7.25 33.16 2.69
44 45 6.992715 TCCAAAAAGTTGTTCCAAGTTTTCAA 59.007 30.769 17.92 8.10 33.16 2.69
45 46 7.499232 TCCAAAAAGTTGTTCCAAGTTTTCAAA 59.501 29.630 17.92 7.85 33.16 2.69
46 47 8.296000 CCAAAAAGTTGTTCCAAGTTTTCAAAT 58.704 29.630 17.92 5.14 33.16 2.32
51 52 9.665719 AAGTTGTTCCAAGTTTTCAAATATTGT 57.334 25.926 0.00 0.00 0.00 2.71
52 53 9.097257 AGTTGTTCCAAGTTTTCAAATATTGTG 57.903 29.630 0.00 0.00 0.00 3.33
53 54 8.878769 GTTGTTCCAAGTTTTCAAATATTGTGT 58.121 29.630 0.00 0.00 0.00 3.72
54 55 8.417780 TGTTCCAAGTTTTCAAATATTGTGTG 57.582 30.769 0.00 0.00 0.00 3.82
55 56 8.037758 TGTTCCAAGTTTTCAAATATTGTGTGT 58.962 29.630 0.00 0.00 0.00 3.72
56 57 8.878769 GTTCCAAGTTTTCAAATATTGTGTGTT 58.121 29.630 0.00 0.00 0.00 3.32
57 58 8.641499 TCCAAGTTTTCAAATATTGTGTGTTC 57.359 30.769 0.00 0.00 0.00 3.18
58 59 8.474025 TCCAAGTTTTCAAATATTGTGTGTTCT 58.526 29.630 0.00 0.00 0.00 3.01
59 60 9.097257 CCAAGTTTTCAAATATTGTGTGTTCTT 57.903 29.630 0.00 0.00 0.00 2.52
62 63 9.868277 AGTTTTCAAATATTGTGTGTTCTTTCA 57.132 25.926 0.00 0.00 0.00 2.69
66 67 8.641499 TCAAATATTGTGTGTTCTTTCAAACC 57.359 30.769 0.00 0.00 0.00 3.27
67 68 8.253810 TCAAATATTGTGTGTTCTTTCAAACCA 58.746 29.630 0.00 0.00 0.00 3.67
68 69 9.044150 CAAATATTGTGTGTTCTTTCAAACCAT 57.956 29.630 0.00 0.00 0.00 3.55
69 70 9.612066 AAATATTGTGTGTTCTTTCAAACCATT 57.388 25.926 0.00 0.00 0.00 3.16
70 71 9.612066 AATATTGTGTGTTCTTTCAAACCATTT 57.388 25.926 0.00 0.00 0.00 2.32
71 72 7.920160 ATTGTGTGTTCTTTCAAACCATTTT 57.080 28.000 0.00 0.00 0.00 1.82
72 73 7.736447 TTGTGTGTTCTTTCAAACCATTTTT 57.264 28.000 0.00 0.00 0.00 1.94
73 74 7.357951 TGTGTGTTCTTTCAAACCATTTTTC 57.642 32.000 0.00 0.00 0.00 2.29
74 75 6.090088 TGTGTGTTCTTTCAAACCATTTTTCG 59.910 34.615 0.00 0.00 0.00 3.46
75 76 5.062809 TGTGTTCTTTCAAACCATTTTTCGC 59.937 36.000 0.00 0.00 0.00 4.70
76 77 5.062809 GTGTTCTTTCAAACCATTTTTCGCA 59.937 36.000 0.00 0.00 0.00 5.10
77 78 5.814705 TGTTCTTTCAAACCATTTTTCGCAT 59.185 32.000 0.00 0.00 0.00 4.73
78 79 6.314896 TGTTCTTTCAAACCATTTTTCGCATT 59.685 30.769 0.00 0.00 0.00 3.56
79 80 6.917217 TCTTTCAAACCATTTTTCGCATTT 57.083 29.167 0.00 0.00 0.00 2.32
80 81 7.313951 TCTTTCAAACCATTTTTCGCATTTT 57.686 28.000 0.00 0.00 0.00 1.82
81 82 7.185453 TCTTTCAAACCATTTTTCGCATTTTG 58.815 30.769 0.00 0.00 0.00 2.44
82 83 6.668541 TTCAAACCATTTTTCGCATTTTGA 57.331 29.167 0.00 0.00 31.42 2.69
83 84 6.668541 TCAAACCATTTTTCGCATTTTGAA 57.331 29.167 0.00 0.00 30.60 2.69
84 85 7.076842 TCAAACCATTTTTCGCATTTTGAAA 57.923 28.000 0.00 0.00 33.73 2.69
85 86 7.530010 TCAAACCATTTTTCGCATTTTGAAAA 58.470 26.923 0.00 0.00 41.99 2.29
86 87 7.695618 TCAAACCATTTTTCGCATTTTGAAAAG 59.304 29.630 0.00 0.00 43.77 2.27
87 88 6.917217 ACCATTTTTCGCATTTTGAAAAGA 57.083 29.167 0.00 0.00 43.77 2.52
88 89 7.313951 ACCATTTTTCGCATTTTGAAAAGAA 57.686 28.000 0.00 0.00 43.77 2.52
89 90 7.756558 ACCATTTTTCGCATTTTGAAAAGAAA 58.243 26.923 0.00 0.00 43.77 2.52
90 91 8.404765 ACCATTTTTCGCATTTTGAAAAGAAAT 58.595 25.926 0.00 0.00 43.77 2.17
91 92 9.235537 CCATTTTTCGCATTTTGAAAAGAAATT 57.764 25.926 0.00 0.00 43.77 1.82
93 94 8.612233 TTTTTCGCATTTTGAAAAGAAATTGG 57.388 26.923 0.00 0.00 43.77 3.16
94 95 7.545362 TTTCGCATTTTGAAAAGAAATTGGA 57.455 28.000 0.00 0.00 32.70 3.53
95 96 7.545362 TTCGCATTTTGAAAAGAAATTGGAA 57.455 28.000 0.00 0.00 0.00 3.53
96 97 7.727331 TCGCATTTTGAAAAGAAATTGGAAT 57.273 28.000 0.00 0.00 0.00 3.01
97 98 8.152309 TCGCATTTTGAAAAGAAATTGGAATT 57.848 26.923 0.00 0.00 0.00 2.17
98 99 8.619546 TCGCATTTTGAAAAGAAATTGGAATTT 58.380 25.926 0.00 0.00 41.06 1.82
99 100 9.875675 CGCATTTTGAAAAGAAATTGGAATTTA 57.124 25.926 0.00 0.00 38.64 1.40
145 146 6.545504 AATATTGAGTGATGGTTATGACGC 57.454 37.500 0.00 0.00 0.00 5.19
146 147 3.610040 TTGAGTGATGGTTATGACGCT 57.390 42.857 0.00 0.00 0.00 5.07
147 148 2.892374 TGAGTGATGGTTATGACGCTG 58.108 47.619 0.00 0.00 0.00 5.18
148 149 1.594862 GAGTGATGGTTATGACGCTGC 59.405 52.381 0.00 0.00 0.00 5.25
149 150 1.208052 AGTGATGGTTATGACGCTGCT 59.792 47.619 0.00 0.00 0.00 4.24
150 151 1.328680 GTGATGGTTATGACGCTGCTG 59.671 52.381 0.00 0.00 0.00 4.41
151 152 0.305922 GATGGTTATGACGCTGCTGC 59.694 55.000 5.34 5.34 0.00 5.25
152 153 0.392863 ATGGTTATGACGCTGCTGCA 60.393 50.000 16.29 0.88 39.64 4.41
153 154 1.020861 TGGTTATGACGCTGCTGCAG 61.021 55.000 24.80 24.80 39.64 4.41
154 155 1.021390 GGTTATGACGCTGCTGCAGT 61.021 55.000 28.50 12.76 39.64 4.40
155 156 0.798776 GTTATGACGCTGCTGCAGTT 59.201 50.000 28.50 17.22 39.64 3.16
156 157 1.197721 GTTATGACGCTGCTGCAGTTT 59.802 47.619 28.50 16.87 39.64 2.66
157 158 0.798159 TATGACGCTGCTGCAGTTTG 59.202 50.000 28.50 20.65 39.64 2.93
158 159 1.168407 ATGACGCTGCTGCAGTTTGT 61.168 50.000 28.50 23.34 39.64 2.83
159 160 1.356624 GACGCTGCTGCAGTTTGTT 59.643 52.632 28.50 10.34 39.64 2.83
160 161 0.658536 GACGCTGCTGCAGTTTGTTC 60.659 55.000 28.50 14.72 39.64 3.18
161 162 1.097547 ACGCTGCTGCAGTTTGTTCT 61.098 50.000 28.50 3.53 39.64 3.01
162 163 0.029834 CGCTGCTGCAGTTTGTTCTT 59.970 50.000 28.50 0.00 39.64 2.52
163 164 1.534595 CGCTGCTGCAGTTTGTTCTTT 60.535 47.619 28.50 0.00 39.64 2.52
164 165 2.286950 CGCTGCTGCAGTTTGTTCTTTA 60.287 45.455 28.50 0.00 39.64 1.85
165 166 3.303406 GCTGCTGCAGTTTGTTCTTTAG 58.697 45.455 28.50 2.03 39.41 1.85
166 167 3.003689 GCTGCTGCAGTTTGTTCTTTAGA 59.996 43.478 28.50 0.00 39.41 2.10
167 168 4.531332 CTGCTGCAGTTTGTTCTTTAGAC 58.469 43.478 21.21 0.00 0.00 2.59
168 169 4.199310 TGCTGCAGTTTGTTCTTTAGACT 58.801 39.130 16.64 0.00 0.00 3.24
169 170 4.640201 TGCTGCAGTTTGTTCTTTAGACTT 59.360 37.500 16.64 0.00 0.00 3.01
170 171 4.972440 GCTGCAGTTTGTTCTTTAGACTTG 59.028 41.667 16.64 0.00 0.00 3.16
171 172 5.499139 TGCAGTTTGTTCTTTAGACTTGG 57.501 39.130 0.00 0.00 0.00 3.61
172 173 4.947388 TGCAGTTTGTTCTTTAGACTTGGT 59.053 37.500 0.00 0.00 0.00 3.67
173 174 5.163663 TGCAGTTTGTTCTTTAGACTTGGTG 60.164 40.000 0.00 0.00 0.00 4.17
174 175 5.273944 CAGTTTGTTCTTTAGACTTGGTGC 58.726 41.667 0.00 0.00 0.00 5.01
175 176 5.066505 CAGTTTGTTCTTTAGACTTGGTGCT 59.933 40.000 0.00 0.00 0.00 4.40
176 177 6.260050 CAGTTTGTTCTTTAGACTTGGTGCTA 59.740 38.462 0.00 0.00 0.00 3.49
177 178 6.260271 AGTTTGTTCTTTAGACTTGGTGCTAC 59.740 38.462 0.00 0.00 0.00 3.58
178 179 5.546621 TGTTCTTTAGACTTGGTGCTACT 57.453 39.130 0.00 0.00 0.00 2.57
179 180 5.297547 TGTTCTTTAGACTTGGTGCTACTG 58.702 41.667 0.00 0.00 0.00 2.74
180 181 5.069914 TGTTCTTTAGACTTGGTGCTACTGA 59.930 40.000 0.00 0.00 0.00 3.41
181 182 5.801531 TCTTTAGACTTGGTGCTACTGAA 57.198 39.130 0.00 0.00 0.00 3.02
182 183 6.360370 TCTTTAGACTTGGTGCTACTGAAT 57.640 37.500 0.00 0.00 0.00 2.57
183 184 6.769512 TCTTTAGACTTGGTGCTACTGAATT 58.230 36.000 0.00 0.00 0.00 2.17
184 185 7.224297 TCTTTAGACTTGGTGCTACTGAATTT 58.776 34.615 0.00 0.00 0.00 1.82
185 186 7.387948 TCTTTAGACTTGGTGCTACTGAATTTC 59.612 37.037 0.00 0.00 0.00 2.17
186 187 4.973168 AGACTTGGTGCTACTGAATTTCA 58.027 39.130 0.00 0.00 0.00 2.69
187 188 4.757149 AGACTTGGTGCTACTGAATTTCAC 59.243 41.667 0.00 0.00 0.00 3.18
188 189 4.460263 ACTTGGTGCTACTGAATTTCACA 58.540 39.130 0.00 0.00 0.00 3.58
189 190 5.072741 ACTTGGTGCTACTGAATTTCACAT 58.927 37.500 0.00 0.00 0.00 3.21
190 191 5.182001 ACTTGGTGCTACTGAATTTCACATC 59.818 40.000 0.00 0.00 0.00 3.06
191 192 4.910195 TGGTGCTACTGAATTTCACATCT 58.090 39.130 0.00 0.00 0.00 2.90
192 193 4.696877 TGGTGCTACTGAATTTCACATCTG 59.303 41.667 0.00 0.00 0.00 2.90
193 194 4.697352 GGTGCTACTGAATTTCACATCTGT 59.303 41.667 0.00 0.00 0.00 3.41
194 195 5.391310 GGTGCTACTGAATTTCACATCTGTG 60.391 44.000 3.90 3.90 46.91 3.66
195 196 5.180117 GTGCTACTGAATTTCACATCTGTGT 59.820 40.000 9.96 0.00 45.76 3.72
224 225 4.814900 CTGGCTAGCACGGTACTG 57.185 61.111 18.24 0.00 0.00 2.74
225 226 2.189833 CTGGCTAGCACGGTACTGA 58.810 57.895 18.24 0.00 0.00 3.41
226 227 0.179134 CTGGCTAGCACGGTACTGAC 60.179 60.000 18.24 0.00 0.00 3.51
227 228 1.141234 GGCTAGCACGGTACTGACC 59.859 63.158 18.24 0.00 43.03 4.02
238 239 3.746045 GGTACTGACCACAACAGAAGA 57.254 47.619 0.00 0.00 46.12 2.87
239 240 4.273148 GGTACTGACCACAACAGAAGAT 57.727 45.455 0.00 0.00 46.12 2.40
240 241 4.246458 GGTACTGACCACAACAGAAGATC 58.754 47.826 0.00 0.00 46.12 2.75
241 242 4.021016 GGTACTGACCACAACAGAAGATCT 60.021 45.833 0.00 0.00 46.12 2.75
242 243 6.080173 GGTACTGACCACAACAGAAGATCTG 61.080 48.000 0.00 5.84 46.51 2.90
258 259 2.988010 TCTGTGGATCGAATTCCAGG 57.012 50.000 8.02 5.10 46.31 4.45
259 260 2.187958 TCTGTGGATCGAATTCCAGGT 58.812 47.619 8.02 0.00 46.31 4.00
260 261 2.571653 TCTGTGGATCGAATTCCAGGTT 59.428 45.455 8.02 0.00 46.31 3.50
261 262 2.679837 CTGTGGATCGAATTCCAGGTTG 59.320 50.000 8.02 0.00 46.31 3.77
262 263 1.401905 GTGGATCGAATTCCAGGTTGC 59.598 52.381 8.02 0.00 46.31 4.17
263 264 0.657840 GGATCGAATTCCAGGTTGCG 59.342 55.000 0.00 0.00 35.72 4.85
264 265 0.028110 GATCGAATTCCAGGTTGCGC 59.972 55.000 0.00 0.00 0.00 6.09
265 266 0.676466 ATCGAATTCCAGGTTGCGCA 60.676 50.000 5.66 5.66 0.00 6.09
266 267 0.676466 TCGAATTCCAGGTTGCGCAT 60.676 50.000 12.75 0.00 0.00 4.73
267 268 0.171007 CGAATTCCAGGTTGCGCATT 59.829 50.000 12.75 0.00 0.00 3.56
268 269 1.795162 CGAATTCCAGGTTGCGCATTC 60.795 52.381 12.75 8.59 0.00 2.67
269 270 1.474077 GAATTCCAGGTTGCGCATTCT 59.526 47.619 12.75 9.29 0.00 2.40
270 271 1.549203 ATTCCAGGTTGCGCATTCTT 58.451 45.000 12.75 0.68 0.00 2.52
271 272 1.327303 TTCCAGGTTGCGCATTCTTT 58.673 45.000 12.75 0.00 0.00 2.52
272 273 0.881118 TCCAGGTTGCGCATTCTTTC 59.119 50.000 12.75 0.00 0.00 2.62
273 274 0.883833 CCAGGTTGCGCATTCTTTCT 59.116 50.000 12.75 0.00 0.00 2.52
274 275 1.270550 CCAGGTTGCGCATTCTTTCTT 59.729 47.619 12.75 0.00 0.00 2.52
275 276 2.322161 CAGGTTGCGCATTCTTTCTTG 58.678 47.619 12.75 1.15 0.00 3.02
276 277 1.956477 AGGTTGCGCATTCTTTCTTGT 59.044 42.857 12.75 0.00 0.00 3.16
277 278 2.362077 AGGTTGCGCATTCTTTCTTGTT 59.638 40.909 12.75 0.00 0.00 2.83
278 279 2.726241 GGTTGCGCATTCTTTCTTGTTC 59.274 45.455 12.75 0.00 0.00 3.18
279 280 3.550842 GGTTGCGCATTCTTTCTTGTTCT 60.551 43.478 12.75 0.00 0.00 3.01
280 281 3.272439 TGCGCATTCTTTCTTGTTCTG 57.728 42.857 5.66 0.00 0.00 3.02
281 282 2.877786 TGCGCATTCTTTCTTGTTCTGA 59.122 40.909 5.66 0.00 0.00 3.27
282 283 3.503363 TGCGCATTCTTTCTTGTTCTGAT 59.497 39.130 5.66 0.00 0.00 2.90
283 284 4.022935 TGCGCATTCTTTCTTGTTCTGATT 60.023 37.500 5.66 0.00 0.00 2.57
284 285 4.919754 GCGCATTCTTTCTTGTTCTGATTT 59.080 37.500 0.30 0.00 0.00 2.17
285 286 5.403466 GCGCATTCTTTCTTGTTCTGATTTT 59.597 36.000 0.30 0.00 0.00 1.82
286 287 6.074142 GCGCATTCTTTCTTGTTCTGATTTTT 60.074 34.615 0.30 0.00 0.00 1.94
310 311 2.738147 CGAACAATCGCGAAGAGGT 58.262 52.632 15.24 4.07 42.96 3.85
311 312 1.068474 CGAACAATCGCGAAGAGGTT 58.932 50.000 15.24 15.01 42.96 3.50
312 313 1.459592 CGAACAATCGCGAAGAGGTTT 59.540 47.619 15.24 0.00 42.96 3.27
313 314 2.664568 CGAACAATCGCGAAGAGGTTTA 59.335 45.455 15.24 0.00 42.96 2.01
314 315 3.481467 CGAACAATCGCGAAGAGGTTTAC 60.481 47.826 15.24 3.88 42.96 2.01
315 316 3.314541 ACAATCGCGAAGAGGTTTACT 57.685 42.857 15.24 0.00 0.00 2.24
316 317 3.251571 ACAATCGCGAAGAGGTTTACTC 58.748 45.455 15.24 0.00 46.98 2.59
325 326 1.763968 GAGGTTTACTCCAATGGGCC 58.236 55.000 0.00 0.00 40.49 5.80
326 327 0.034477 AGGTTTACTCCAATGGGCCG 60.034 55.000 0.00 0.00 0.00 6.13
327 328 1.035385 GGTTTACTCCAATGGGCCGG 61.035 60.000 0.00 0.00 0.00 6.13
328 329 1.379309 TTTACTCCAATGGGCCGGC 60.379 57.895 21.18 21.18 0.00 6.13
329 330 2.847366 TTTACTCCAATGGGCCGGCC 62.847 60.000 38.57 38.57 0.00 6.13
356 357 2.202623 GCGGTCTGTGCGTAGAGG 60.203 66.667 0.00 0.00 0.00 3.69
357 358 2.202623 CGGTCTGTGCGTAGAGGC 60.203 66.667 0.00 0.00 0.00 4.70
358 359 2.202623 GGTCTGTGCGTAGAGGCG 60.203 66.667 0.00 0.00 35.06 5.52
359 360 2.567049 GTCTGTGCGTAGAGGCGT 59.433 61.111 0.00 0.00 35.06 5.68
360 361 1.514443 GTCTGTGCGTAGAGGCGTC 60.514 63.158 0.00 0.00 35.06 5.19
361 362 1.674651 TCTGTGCGTAGAGGCGTCT 60.675 57.895 14.25 14.25 36.75 4.18
362 363 1.515088 CTGTGCGTAGAGGCGTCTG 60.515 63.158 18.96 4.33 33.84 3.51
363 364 2.201436 CTGTGCGTAGAGGCGTCTGT 62.201 60.000 18.96 0.00 33.84 3.41
364 365 1.080705 GTGCGTAGAGGCGTCTGTT 60.081 57.895 18.96 0.00 33.84 3.16
365 366 0.666577 GTGCGTAGAGGCGTCTGTTT 60.667 55.000 18.96 0.00 33.84 2.83
366 367 0.666274 TGCGTAGAGGCGTCTGTTTG 60.666 55.000 18.96 6.88 33.84 2.93
367 368 1.956620 GCGTAGAGGCGTCTGTTTGC 61.957 60.000 18.96 12.50 33.84 3.68
373 374 3.173853 GCGTCTGTTTGCCGCATA 58.826 55.556 0.00 0.00 46.26 3.14
374 375 1.499949 GCGTCTGTTTGCCGCATAA 59.500 52.632 0.00 0.00 46.26 1.90
375 376 0.098728 GCGTCTGTTTGCCGCATAAT 59.901 50.000 0.00 0.00 46.26 1.28
376 377 1.813896 CGTCTGTTTGCCGCATAATG 58.186 50.000 0.00 0.00 0.00 1.90
377 378 1.548986 GTCTGTTTGCCGCATAATGC 58.451 50.000 0.00 0.00 40.69 3.56
390 391 4.342352 GCATAATGCGGTAAATAGGAGC 57.658 45.455 0.00 0.00 31.71 4.70
391 392 3.751175 GCATAATGCGGTAAATAGGAGCA 59.249 43.478 0.00 0.00 42.28 4.26
392 393 4.378459 GCATAATGCGGTAAATAGGAGCAC 60.378 45.833 0.00 0.00 40.82 4.40
393 394 2.256117 ATGCGGTAAATAGGAGCACC 57.744 50.000 0.00 0.00 40.82 5.01
394 395 0.179468 TGCGGTAAATAGGAGCACCC 59.821 55.000 0.00 0.00 36.73 4.61
395 396 0.534427 GCGGTAAATAGGAGCACCCC 60.534 60.000 0.00 0.00 36.73 4.95
396 397 0.834612 CGGTAAATAGGAGCACCCCA 59.165 55.000 0.00 0.00 36.73 4.96
397 398 1.210967 CGGTAAATAGGAGCACCCCAA 59.789 52.381 0.00 0.00 36.73 4.12
398 399 2.356330 CGGTAAATAGGAGCACCCCAAA 60.356 50.000 0.00 0.00 36.73 3.28
399 400 3.703921 GGTAAATAGGAGCACCCCAAAA 58.296 45.455 0.00 0.00 36.73 2.44
400 401 4.286707 GGTAAATAGGAGCACCCCAAAAT 58.713 43.478 0.00 0.00 36.73 1.82
401 402 5.451354 GGTAAATAGGAGCACCCCAAAATA 58.549 41.667 0.00 0.00 36.73 1.40
402 403 5.301045 GGTAAATAGGAGCACCCCAAAATAC 59.699 44.000 0.00 0.00 36.73 1.89
403 404 4.881157 AATAGGAGCACCCCAAAATACT 57.119 40.909 0.00 0.00 36.73 2.12
404 405 2.514458 AGGAGCACCCCAAAATACTG 57.486 50.000 0.00 0.00 36.73 2.74
405 406 1.710809 AGGAGCACCCCAAAATACTGT 59.289 47.619 0.00 0.00 36.73 3.55
406 407 2.092323 GGAGCACCCCAAAATACTGTC 58.908 52.381 0.00 0.00 0.00 3.51
407 408 2.290960 GGAGCACCCCAAAATACTGTCT 60.291 50.000 0.00 0.00 0.00 3.41
408 409 3.010420 GAGCACCCCAAAATACTGTCTC 58.990 50.000 0.00 0.00 0.00 3.36
427 428 2.594592 GCAGGCTGTGGACCGTTT 60.595 61.111 17.16 0.00 0.00 3.60
430 431 0.310854 CAGGCTGTGGACCGTTTTTC 59.689 55.000 6.28 0.00 0.00 2.29
431 432 0.182775 AGGCTGTGGACCGTTTTTCT 59.817 50.000 0.00 0.00 0.00 2.52
472 473 1.587088 GGGCCGTACACGTCGTATG 60.587 63.158 0.00 9.20 36.92 2.39
473 474 2.226225 GGCCGTACACGTCGTATGC 61.226 63.158 0.00 10.59 35.99 3.14
474 475 2.226225 GCCGTACACGTCGTATGCC 61.226 63.158 0.00 0.00 35.99 4.40
475 476 1.430632 CCGTACACGTCGTATGCCT 59.569 57.895 0.00 0.00 35.99 4.75
476 477 0.590732 CCGTACACGTCGTATGCCTC 60.591 60.000 0.00 0.00 35.99 4.70
477 478 0.376152 CGTACACGTCGTATGCCTCT 59.624 55.000 0.00 0.00 30.48 3.69
478 479 1.202110 CGTACACGTCGTATGCCTCTT 60.202 52.381 0.00 0.00 30.48 2.85
479 480 2.182825 GTACACGTCGTATGCCTCTTG 58.817 52.381 0.00 0.00 31.20 3.02
480 481 0.601558 ACACGTCGTATGCCTCTTGT 59.398 50.000 0.00 0.00 0.00 3.16
481 482 1.814394 ACACGTCGTATGCCTCTTGTA 59.186 47.619 0.00 0.00 0.00 2.41
482 483 2.426024 ACACGTCGTATGCCTCTTGTAT 59.574 45.455 0.00 0.00 0.00 2.29
563 564 2.181021 CTCCCCGTACACAGACGC 59.819 66.667 0.00 0.00 41.56 5.19
646 647 2.010145 TCTATCCACTGCGAAGTTGC 57.990 50.000 0.00 0.00 0.00 4.17
786 803 0.039618 TTGGCAGTTCCTCCCCAATC 59.960 55.000 0.00 0.00 32.73 2.67
790 807 1.165782 AGTTCCTCCCCAATCCCCA 59.834 57.895 0.00 0.00 0.00 4.96
926 943 2.325082 AACGGCGATGAACAGTGGC 61.325 57.895 16.62 0.00 0.00 5.01
1042 1061 9.241919 TCCCGAGTAAATTTCGTGGTATATATA 57.758 33.333 0.00 0.00 36.37 0.86
1062 1081 2.849880 TTTGCAACAGCTGTGAACTC 57.150 45.000 22.49 8.49 0.00 3.01
1115 1134 2.031682 ACTTGCACAAATCGAACTGAGC 60.032 45.455 11.05 11.05 0.00 4.26
1121 1140 3.250762 CACAAATCGAACTGAGCTTCCAA 59.749 43.478 4.27 0.00 0.00 3.53
1132 1151 2.555547 GCTTCCAACACGCAAGCCT 61.556 57.895 0.00 0.00 45.62 4.58
1177 1196 8.647226 CACCATAAAAGCTGCAGTTTTATTTAC 58.353 33.333 26.06 1.57 37.78 2.01
1244 1265 3.825014 GAGTCCTCTGGTTGTGTACTGTA 59.175 47.826 0.00 0.00 0.00 2.74
1320 1341 7.445945 ACTCTTGTATTAGCTTGAGACAAAGT 58.554 34.615 10.07 11.84 30.14 2.66
1485 1506 5.363101 ACATACATGTGATGAGGTGACATC 58.637 41.667 9.11 0.00 44.58 3.06
1494 1515 4.825422 GATGAGGTGACATCAGTTTCTGA 58.175 43.478 6.03 1.92 44.99 3.27
1510 1531 5.237344 AGTTTCTGAACTTTCTTGACATCGG 59.763 40.000 0.00 0.00 43.48 4.18
1519 1540 1.089112 CTTGACATCGGCAGCAATCA 58.911 50.000 0.00 0.00 0.00 2.57
1523 1544 0.182061 ACATCGGCAGCAATCAGGAT 59.818 50.000 0.00 0.00 0.00 3.24
1524 1545 1.315690 CATCGGCAGCAATCAGGATT 58.684 50.000 0.00 0.00 0.00 3.01
1525 1546 1.679680 CATCGGCAGCAATCAGGATTT 59.320 47.619 0.00 0.00 0.00 2.17
1563 1584 2.359107 AGTCAGGCATGTGCACCG 60.359 61.111 15.69 6.70 44.36 4.94
1565 1586 3.635191 TCAGGCATGTGCACCGGA 61.635 61.111 15.69 1.66 44.36 5.14
1708 1729 3.877508 CAGTAAGCAAATGGTAGGGTAGC 59.122 47.826 0.00 0.00 0.00 3.58
1716 1737 3.864789 ATGGTAGGGTAGCAAATCCAG 57.135 47.619 0.00 0.00 39.89 3.86
1812 1833 3.689649 GTGGTTCCAGCAGAATAATCGTT 59.310 43.478 0.00 0.00 36.69 3.85
1817 1838 3.374988 TCCAGCAGAATAATCGTTGCTTG 59.625 43.478 0.00 0.00 43.91 4.01
1960 1981 6.613755 TTAATCAGAAATTAGCCCTAACGC 57.386 37.500 0.00 0.00 0.00 4.84
2029 2057 2.590276 CGTGTCGCATCTCTTATATCGC 59.410 50.000 0.00 0.00 0.00 4.58
2125 2153 4.961438 ATTGGAATGTGCAGTTTTCCTT 57.039 36.364 18.20 7.63 39.72 3.36
2126 2154 6.418057 AATTGGAATGTGCAGTTTTCCTTA 57.582 33.333 18.20 10.11 39.72 2.69
2131 2159 1.203001 TGTGCAGTTTTCCTTAGGGGG 60.203 52.381 0.00 0.00 35.33 5.40
2217 2245 7.465900 AAGTCTATGATAAATTCCCTTGGGA 57.534 36.000 3.91 3.91 0.00 4.37
2980 3026 0.893727 TCTCCGTGTGCTACAGCTCA 60.894 55.000 2.44 2.21 41.53 4.26
3172 3218 0.982852 CATACCTGGAGCTCCCACCA 60.983 60.000 29.95 11.13 40.82 4.17
3641 3693 6.502138 AGGACATTAATGGGAAGGAATTTGA 58.498 36.000 19.37 0.00 0.00 2.69
3688 3740 2.037511 AGGAACAACGTCAATCCGGTTA 59.962 45.455 0.00 0.00 37.05 2.85
4005 4934 2.945668 GGGTAGCATGGTTGTCAGATTC 59.054 50.000 1.12 0.00 0.00 2.52
4118 5097 8.177013 CCCATTGTTTTTCTTCAAAAGTTTCAG 58.823 33.333 0.00 0.00 34.90 3.02
4119 5098 8.177013 CCATTGTTTTTCTTCAAAAGTTTCAGG 58.823 33.333 0.00 0.00 34.90 3.86
4120 5099 7.665561 TTGTTTTTCTTCAAAAGTTTCAGGG 57.334 32.000 0.00 0.00 34.90 4.45
4121 5100 6.764379 TGTTTTTCTTCAAAAGTTTCAGGGT 58.236 32.000 0.00 0.00 34.90 4.34
4123 5102 8.368668 TGTTTTTCTTCAAAAGTTTCAGGGTTA 58.631 29.630 0.00 0.00 34.90 2.85
4124 5103 8.869897 GTTTTTCTTCAAAAGTTTCAGGGTTAG 58.130 33.333 0.00 0.00 34.90 2.34
4126 5105 6.693315 TCTTCAAAAGTTTCAGGGTTAGTG 57.307 37.500 0.00 0.00 0.00 2.74
4127 5106 6.184789 TCTTCAAAAGTTTCAGGGTTAGTGT 58.815 36.000 0.00 0.00 0.00 3.55
4128 5107 6.661805 TCTTCAAAAGTTTCAGGGTTAGTGTT 59.338 34.615 0.00 0.00 0.00 3.32
4209 5216 2.649742 TCCCTGGACCTTCTGATCTT 57.350 50.000 0.00 0.00 0.00 2.40
4253 5388 6.154877 AGTGAGAATGAACTGATCTCTGTGAT 59.845 38.462 0.00 0.00 40.18 3.06
4295 5610 5.220931 GGCACATAGGACATCATCAAAAGTC 60.221 44.000 0.00 0.00 0.00 3.01
4407 7525 2.209838 ACGACGGATTGTGCTATGAG 57.790 50.000 0.00 0.00 0.00 2.90
4410 7528 2.535984 CGACGGATTGTGCTATGAGTTC 59.464 50.000 0.00 0.00 0.00 3.01
4414 7532 5.730550 ACGGATTGTGCTATGAGTTCTAAA 58.269 37.500 0.00 0.00 0.00 1.85
4415 7533 6.349300 ACGGATTGTGCTATGAGTTCTAAAT 58.651 36.000 0.00 0.00 0.00 1.40
4418 7536 8.826710 CGGATTGTGCTATGAGTTCTAAATTTA 58.173 33.333 0.00 0.00 0.00 1.40
4478 7596 0.881796 ATTCAGTGTCGACTCGAGCA 59.118 50.000 17.92 0.00 36.23 4.26
4481 7599 1.081108 AGTGTCGACTCGAGCAAGC 60.081 57.895 17.92 1.37 36.23 4.01
4521 7640 5.047377 ACCCGTTACTTTAACTGACCGATTA 60.047 40.000 0.00 0.00 36.54 1.75
4524 7643 6.452735 CGTTACTTTAACTGACCGATTAACG 58.547 40.000 0.00 0.00 37.86 3.18
4528 7647 2.825861 AACTGACCGATTAACGTGGT 57.174 45.000 0.00 0.00 40.78 4.16
4535 7654 2.036217 ACCGATTAACGTGGTGTGAGAA 59.964 45.455 0.00 0.00 40.78 2.87
4562 7681 4.692625 AGAAGACCAAATTGACACGATCAG 59.307 41.667 0.00 0.00 38.99 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 9.710900 GGAACAACTTTTTGGAATTATGAAGAT 57.289 29.630 0.00 0.00 37.00 2.40
9 10 8.700051 TGGAACAACTTTTTGGAATTATGAAGA 58.300 29.630 0.00 0.00 37.00 2.87
10 11 8.885494 TGGAACAACTTTTTGGAATTATGAAG 57.115 30.769 0.00 0.00 37.00 3.02
29 30 8.037758 ACACACAATATTTGAAAACTTGGAACA 58.962 29.630 7.45 0.00 0.00 3.18
30 31 8.419076 ACACACAATATTTGAAAACTTGGAAC 57.581 30.769 7.45 0.00 0.00 3.62
31 32 9.092876 GAACACACAATATTTGAAAACTTGGAA 57.907 29.630 7.45 0.00 0.00 3.53
32 33 8.474025 AGAACACACAATATTTGAAAACTTGGA 58.526 29.630 7.45 0.00 0.00 3.53
33 34 8.647143 AGAACACACAATATTTGAAAACTTGG 57.353 30.769 7.45 1.33 0.00 3.61
36 37 9.868277 TGAAAGAACACACAATATTTGAAAACT 57.132 25.926 5.11 0.00 0.00 2.66
40 41 9.092876 GGTTTGAAAGAACACACAATATTTGAA 57.907 29.630 5.11 0.00 0.00 2.69
41 42 8.253810 TGGTTTGAAAGAACACACAATATTTGA 58.746 29.630 5.11 0.00 0.00 2.69
42 43 8.417780 TGGTTTGAAAGAACACACAATATTTG 57.582 30.769 0.00 0.00 0.00 2.32
43 44 9.612066 AATGGTTTGAAAGAACACACAATATTT 57.388 25.926 0.00 0.00 0.00 1.40
44 45 9.612066 AAATGGTTTGAAAGAACACACAATATT 57.388 25.926 0.00 0.00 0.00 1.28
45 46 9.612066 AAAATGGTTTGAAAGAACACACAATAT 57.388 25.926 0.00 0.00 0.00 1.28
46 47 9.442047 AAAAATGGTTTGAAAGAACACACAATA 57.558 25.926 0.00 0.00 0.00 1.90
47 48 7.920160 AAAATGGTTTGAAAGAACACACAAT 57.080 28.000 0.00 0.00 0.00 2.71
48 49 7.359598 CGAAAAATGGTTTGAAAGAACACACAA 60.360 33.333 0.00 0.00 0.00 3.33
49 50 6.090088 CGAAAAATGGTTTGAAAGAACACACA 59.910 34.615 0.00 0.00 0.00 3.72
50 51 6.465978 CGAAAAATGGTTTGAAAGAACACAC 58.534 36.000 0.00 0.00 0.00 3.82
51 52 5.062809 GCGAAAAATGGTTTGAAAGAACACA 59.937 36.000 0.00 0.00 0.00 3.72
52 53 5.062809 TGCGAAAAATGGTTTGAAAGAACAC 59.937 36.000 0.00 0.00 0.00 3.32
53 54 5.171476 TGCGAAAAATGGTTTGAAAGAACA 58.829 33.333 0.00 0.00 0.00 3.18
54 55 5.710613 TGCGAAAAATGGTTTGAAAGAAC 57.289 34.783 0.00 0.00 0.00 3.01
55 56 6.917217 AATGCGAAAAATGGTTTGAAAGAA 57.083 29.167 0.00 0.00 0.00 2.52
56 57 6.917217 AAATGCGAAAAATGGTTTGAAAGA 57.083 29.167 0.00 0.00 0.00 2.52
57 58 7.185453 TCAAAATGCGAAAAATGGTTTGAAAG 58.815 30.769 0.00 0.00 32.28 2.62
58 59 7.076842 TCAAAATGCGAAAAATGGTTTGAAA 57.923 28.000 0.00 0.00 32.28 2.69
59 60 6.668541 TCAAAATGCGAAAAATGGTTTGAA 57.331 29.167 0.00 0.00 32.28 2.69
60 61 6.668541 TTCAAAATGCGAAAAATGGTTTGA 57.331 29.167 0.00 0.00 33.10 2.69
61 62 7.695618 TCTTTTCAAAATGCGAAAAATGGTTTG 59.304 29.630 0.00 0.00 40.73 2.93
62 63 7.756558 TCTTTTCAAAATGCGAAAAATGGTTT 58.243 26.923 0.00 0.00 40.73 3.27
63 64 7.313951 TCTTTTCAAAATGCGAAAAATGGTT 57.686 28.000 0.00 0.00 40.73 3.67
64 65 6.917217 TCTTTTCAAAATGCGAAAAATGGT 57.083 29.167 0.00 0.00 40.73 3.55
65 66 8.785468 ATTTCTTTTCAAAATGCGAAAAATGG 57.215 26.923 1.22 0.00 40.73 3.16
67 68 9.235537 CCAATTTCTTTTCAAAATGCGAAAAAT 57.764 25.926 1.22 0.00 40.73 1.82
68 69 8.454106 TCCAATTTCTTTTCAAAATGCGAAAAA 58.546 25.926 1.22 0.00 40.73 1.94
69 70 7.978982 TCCAATTTCTTTTCAAAATGCGAAAA 58.021 26.923 1.22 0.00 39.42 2.29
70 71 7.545362 TCCAATTTCTTTTCAAAATGCGAAA 57.455 28.000 0.00 0.00 0.00 3.46
71 72 7.545362 TTCCAATTTCTTTTCAAAATGCGAA 57.455 28.000 0.00 0.00 0.00 4.70
72 73 7.727331 ATTCCAATTTCTTTTCAAAATGCGA 57.273 28.000 0.00 0.00 0.00 5.10
73 74 8.785468 AAATTCCAATTTCTTTTCAAAATGCG 57.215 26.923 0.00 0.00 33.54 4.73
119 120 8.556194 GCGTCATAACCATCACTCAATATTTTA 58.444 33.333 0.00 0.00 0.00 1.52
120 121 7.283127 AGCGTCATAACCATCACTCAATATTTT 59.717 33.333 0.00 0.00 0.00 1.82
121 122 6.767902 AGCGTCATAACCATCACTCAATATTT 59.232 34.615 0.00 0.00 0.00 1.40
122 123 6.203530 CAGCGTCATAACCATCACTCAATATT 59.796 38.462 0.00 0.00 0.00 1.28
123 124 5.698089 CAGCGTCATAACCATCACTCAATAT 59.302 40.000 0.00 0.00 0.00 1.28
124 125 5.049828 CAGCGTCATAACCATCACTCAATA 58.950 41.667 0.00 0.00 0.00 1.90
125 126 3.873361 CAGCGTCATAACCATCACTCAAT 59.127 43.478 0.00 0.00 0.00 2.57
126 127 3.261580 CAGCGTCATAACCATCACTCAA 58.738 45.455 0.00 0.00 0.00 3.02
127 128 2.892374 CAGCGTCATAACCATCACTCA 58.108 47.619 0.00 0.00 0.00 3.41
128 129 1.594862 GCAGCGTCATAACCATCACTC 59.405 52.381 0.00 0.00 0.00 3.51
129 130 1.208052 AGCAGCGTCATAACCATCACT 59.792 47.619 0.00 0.00 0.00 3.41
130 131 1.328680 CAGCAGCGTCATAACCATCAC 59.671 52.381 0.00 0.00 0.00 3.06
131 132 1.655484 CAGCAGCGTCATAACCATCA 58.345 50.000 0.00 0.00 0.00 3.07
132 133 0.305922 GCAGCAGCGTCATAACCATC 59.694 55.000 0.00 0.00 0.00 3.51
133 134 0.392863 TGCAGCAGCGTCATAACCAT 60.393 50.000 0.00 0.00 46.23 3.55
134 135 1.003959 TGCAGCAGCGTCATAACCA 60.004 52.632 0.00 0.00 46.23 3.67
135 136 1.021390 ACTGCAGCAGCGTCATAACC 61.021 55.000 23.05 0.00 46.23 2.85
136 137 0.798776 AACTGCAGCAGCGTCATAAC 59.201 50.000 23.05 0.00 46.23 1.89
137 138 1.197492 CAAACTGCAGCAGCGTCATAA 59.803 47.619 23.05 0.00 46.23 1.90
138 139 0.798159 CAAACTGCAGCAGCGTCATA 59.202 50.000 23.05 0.00 46.23 2.15
139 140 1.168407 ACAAACTGCAGCAGCGTCAT 61.168 50.000 23.05 0.00 46.23 3.06
140 141 1.375853 AACAAACTGCAGCAGCGTCA 61.376 50.000 23.05 0.00 46.23 4.35
141 142 0.658536 GAACAAACTGCAGCAGCGTC 60.659 55.000 23.05 8.75 46.23 5.19
142 143 1.097547 AGAACAAACTGCAGCAGCGT 61.098 50.000 23.05 14.11 46.23 5.07
143 144 0.029834 AAGAACAAACTGCAGCAGCG 59.970 50.000 23.05 13.44 46.23 5.18
144 145 2.214387 AAAGAACAAACTGCAGCAGC 57.786 45.000 23.05 4.79 42.57 5.25
145 146 4.274459 AGTCTAAAGAACAAACTGCAGCAG 59.726 41.667 21.54 21.54 37.52 4.24
146 147 4.199310 AGTCTAAAGAACAAACTGCAGCA 58.801 39.130 15.27 0.00 0.00 4.41
147 148 4.820284 AGTCTAAAGAACAAACTGCAGC 57.180 40.909 15.27 0.00 0.00 5.25
148 149 5.066505 ACCAAGTCTAAAGAACAAACTGCAG 59.933 40.000 13.48 13.48 0.00 4.41
149 150 4.947388 ACCAAGTCTAAAGAACAAACTGCA 59.053 37.500 0.00 0.00 0.00 4.41
150 151 5.273944 CACCAAGTCTAAAGAACAAACTGC 58.726 41.667 0.00 0.00 0.00 4.40
151 152 5.066505 AGCACCAAGTCTAAAGAACAAACTG 59.933 40.000 0.00 0.00 0.00 3.16
152 153 5.193679 AGCACCAAGTCTAAAGAACAAACT 58.806 37.500 0.00 0.00 0.00 2.66
153 154 5.500645 AGCACCAAGTCTAAAGAACAAAC 57.499 39.130 0.00 0.00 0.00 2.93
154 155 6.260050 CAGTAGCACCAAGTCTAAAGAACAAA 59.740 38.462 0.00 0.00 0.00 2.83
155 156 5.758296 CAGTAGCACCAAGTCTAAAGAACAA 59.242 40.000 0.00 0.00 0.00 2.83
156 157 5.069914 TCAGTAGCACCAAGTCTAAAGAACA 59.930 40.000 0.00 0.00 0.00 3.18
157 158 5.539048 TCAGTAGCACCAAGTCTAAAGAAC 58.461 41.667 0.00 0.00 0.00 3.01
158 159 5.801531 TCAGTAGCACCAAGTCTAAAGAA 57.198 39.130 0.00 0.00 0.00 2.52
159 160 5.801531 TTCAGTAGCACCAAGTCTAAAGA 57.198 39.130 0.00 0.00 0.00 2.52
160 161 7.173218 TGAAATTCAGTAGCACCAAGTCTAAAG 59.827 37.037 0.00 0.00 0.00 1.85
161 162 6.995686 TGAAATTCAGTAGCACCAAGTCTAAA 59.004 34.615 0.00 0.00 0.00 1.85
162 163 6.426937 GTGAAATTCAGTAGCACCAAGTCTAA 59.573 38.462 0.00 0.00 0.00 2.10
163 164 5.932303 GTGAAATTCAGTAGCACCAAGTCTA 59.068 40.000 0.00 0.00 0.00 2.59
164 165 4.757149 GTGAAATTCAGTAGCACCAAGTCT 59.243 41.667 0.00 0.00 0.00 3.24
165 166 4.515191 TGTGAAATTCAGTAGCACCAAGTC 59.485 41.667 0.00 0.00 0.00 3.01
166 167 4.460263 TGTGAAATTCAGTAGCACCAAGT 58.540 39.130 0.00 0.00 0.00 3.16
167 168 5.413833 AGATGTGAAATTCAGTAGCACCAAG 59.586 40.000 0.00 0.00 0.00 3.61
168 169 5.181811 CAGATGTGAAATTCAGTAGCACCAA 59.818 40.000 0.00 0.00 0.00 3.67
169 170 4.696877 CAGATGTGAAATTCAGTAGCACCA 59.303 41.667 0.00 0.00 0.00 4.17
170 171 4.697352 ACAGATGTGAAATTCAGTAGCACC 59.303 41.667 0.00 0.00 0.00 5.01
171 172 5.869753 ACAGATGTGAAATTCAGTAGCAC 57.130 39.130 0.00 0.00 0.00 4.40
191 192 1.674359 CCAGCCAAACTGTACACACA 58.326 50.000 0.00 0.00 45.68 3.72
192 193 0.310854 GCCAGCCAAACTGTACACAC 59.689 55.000 0.00 0.00 45.68 3.82
193 194 0.182537 AGCCAGCCAAACTGTACACA 59.817 50.000 0.00 0.00 45.68 3.72
194 195 2.076863 CTAGCCAGCCAAACTGTACAC 58.923 52.381 0.00 0.00 45.68 2.90
195 196 1.610624 GCTAGCCAGCCAAACTGTACA 60.611 52.381 2.29 0.00 45.68 2.90
196 197 1.087501 GCTAGCCAGCCAAACTGTAC 58.912 55.000 2.29 0.00 45.68 2.90
197 198 3.551259 GCTAGCCAGCCAAACTGTA 57.449 52.632 2.29 0.00 45.68 2.74
198 199 4.404691 GCTAGCCAGCCAAACTGT 57.595 55.556 2.29 0.00 45.68 3.55
207 208 0.179134 GTCAGTACCGTGCTAGCCAG 60.179 60.000 13.29 5.88 0.00 4.85
208 209 1.601419 GGTCAGTACCGTGCTAGCCA 61.601 60.000 13.29 0.00 35.62 4.75
209 210 1.141234 GGTCAGTACCGTGCTAGCC 59.859 63.158 13.29 2.49 35.62 3.93
210 211 4.808649 GGTCAGTACCGTGCTAGC 57.191 61.111 8.10 8.10 35.62 3.42
218 219 3.746045 TCTTCTGTTGTGGTCAGTACC 57.254 47.619 0.00 0.00 46.98 3.34
219 220 4.926238 CAGATCTTCTGTTGTGGTCAGTAC 59.074 45.833 0.00 0.00 39.58 2.73
220 221 5.139435 CAGATCTTCTGTTGTGGTCAGTA 57.861 43.478 0.00 0.00 39.58 2.74
221 222 4.000331 CAGATCTTCTGTTGTGGTCAGT 58.000 45.455 0.00 0.00 39.58 3.41
232 233 5.683249 TGGAATTCGATCCACAGATCTTCTG 60.683 44.000 3.55 3.03 45.83 3.02
233 234 4.406972 TGGAATTCGATCCACAGATCTTCT 59.593 41.667 3.55 0.00 45.83 2.85
234 235 4.697514 TGGAATTCGATCCACAGATCTTC 58.302 43.478 3.55 0.00 45.83 2.87
235 236 4.444022 CCTGGAATTCGATCCACAGATCTT 60.444 45.833 3.55 0.00 45.83 2.40
236 237 3.070734 CCTGGAATTCGATCCACAGATCT 59.929 47.826 3.55 0.00 45.83 2.75
237 238 3.181461 ACCTGGAATTCGATCCACAGATC 60.181 47.826 3.55 0.00 44.52 2.75
238 239 2.774234 ACCTGGAATTCGATCCACAGAT 59.226 45.455 3.55 0.00 44.52 2.90
239 240 2.187958 ACCTGGAATTCGATCCACAGA 58.812 47.619 3.55 0.00 44.52 3.41
240 241 2.679837 CAACCTGGAATTCGATCCACAG 59.320 50.000 3.55 2.65 44.52 3.66
241 242 2.710377 CAACCTGGAATTCGATCCACA 58.290 47.619 3.55 0.00 44.52 4.17
242 243 1.401905 GCAACCTGGAATTCGATCCAC 59.598 52.381 3.55 0.00 44.52 4.02
244 245 0.657840 CGCAACCTGGAATTCGATCC 59.342 55.000 0.00 0.00 40.10 3.36
245 246 0.028110 GCGCAACCTGGAATTCGATC 59.972 55.000 0.30 0.00 0.00 3.69
246 247 0.676466 TGCGCAACCTGGAATTCGAT 60.676 50.000 8.16 0.00 0.00 3.59
247 248 0.676466 ATGCGCAACCTGGAATTCGA 60.676 50.000 17.11 0.00 0.00 3.71
248 249 0.171007 AATGCGCAACCTGGAATTCG 59.829 50.000 17.11 0.00 0.00 3.34
249 250 1.474077 AGAATGCGCAACCTGGAATTC 59.526 47.619 17.11 11.34 0.00 2.17
250 251 1.549203 AGAATGCGCAACCTGGAATT 58.451 45.000 17.11 0.00 0.00 2.17
251 252 1.549203 AAGAATGCGCAACCTGGAAT 58.451 45.000 17.11 0.00 0.00 3.01
252 253 1.269448 GAAAGAATGCGCAACCTGGAA 59.731 47.619 17.11 0.00 0.00 3.53
253 254 0.881118 GAAAGAATGCGCAACCTGGA 59.119 50.000 17.11 0.00 0.00 3.86
254 255 0.883833 AGAAAGAATGCGCAACCTGG 59.116 50.000 17.11 0.00 0.00 4.45
255 256 2.287788 ACAAGAAAGAATGCGCAACCTG 60.288 45.455 17.11 6.12 0.00 4.00
256 257 1.956477 ACAAGAAAGAATGCGCAACCT 59.044 42.857 17.11 12.07 0.00 3.50
257 258 2.422276 ACAAGAAAGAATGCGCAACC 57.578 45.000 17.11 9.53 0.00 3.77
258 259 3.423206 CAGAACAAGAAAGAATGCGCAAC 59.577 43.478 17.11 12.39 0.00 4.17
259 260 3.314913 TCAGAACAAGAAAGAATGCGCAA 59.685 39.130 17.11 0.00 0.00 4.85
260 261 2.877786 TCAGAACAAGAAAGAATGCGCA 59.122 40.909 14.96 14.96 0.00 6.09
261 262 3.542712 TCAGAACAAGAAAGAATGCGC 57.457 42.857 0.00 0.00 0.00 6.09
262 263 6.998258 AAAATCAGAACAAGAAAGAATGCG 57.002 33.333 0.00 0.00 0.00 4.73
283 284 2.789813 CGATTGTTCGGCGCAAAAA 58.210 47.368 10.83 0.00 41.74 1.94
284 285 4.524305 CGATTGTTCGGCGCAAAA 57.476 50.000 10.83 0.00 41.74 2.44
288 289 4.142047 TTCGCGATTGTTCGGCGC 62.142 61.111 10.88 0.00 45.59 6.53
289 290 2.020016 CTTCGCGATTGTTCGGCG 59.980 61.111 10.88 0.00 45.59 6.46
290 291 1.345176 CTCTTCGCGATTGTTCGGC 59.655 57.895 10.88 0.00 45.59 5.54
291 292 0.736325 ACCTCTTCGCGATTGTTCGG 60.736 55.000 10.88 7.71 45.59 4.30
292 293 7.385643 GAGTAAACCTCTTCGCGATTGTTCG 62.386 48.000 10.88 0.00 41.53 3.95
293 294 3.678548 AGTAAACCTCTTCGCGATTGTTC 59.321 43.478 10.88 0.93 0.00 3.18
294 295 3.660865 AGTAAACCTCTTCGCGATTGTT 58.339 40.909 10.88 8.43 0.00 2.83
295 296 3.251571 GAGTAAACCTCTTCGCGATTGT 58.748 45.455 10.88 1.64 37.22 2.71
296 297 2.603560 GGAGTAAACCTCTTCGCGATTG 59.396 50.000 10.88 6.45 40.30 2.67
297 298 2.232941 TGGAGTAAACCTCTTCGCGATT 59.767 45.455 10.88 1.96 40.30 3.34
298 299 1.822990 TGGAGTAAACCTCTTCGCGAT 59.177 47.619 10.88 0.00 40.30 4.58
299 300 1.250328 TGGAGTAAACCTCTTCGCGA 58.750 50.000 3.71 3.71 40.30 5.87
300 301 2.074547 TTGGAGTAAACCTCTTCGCG 57.925 50.000 0.00 0.00 40.30 5.87
301 302 2.678336 CCATTGGAGTAAACCTCTTCGC 59.322 50.000 0.00 0.00 40.30 4.70
302 303 3.270877 CCCATTGGAGTAAACCTCTTCG 58.729 50.000 3.62 0.00 40.30 3.79
303 304 3.017442 GCCCATTGGAGTAAACCTCTTC 58.983 50.000 3.62 0.00 40.30 2.87
304 305 2.291605 GGCCCATTGGAGTAAACCTCTT 60.292 50.000 3.62 0.00 40.30 2.85
305 306 1.285078 GGCCCATTGGAGTAAACCTCT 59.715 52.381 3.62 0.00 40.30 3.69
306 307 1.763968 GGCCCATTGGAGTAAACCTC 58.236 55.000 3.62 0.00 39.67 3.85
307 308 0.034477 CGGCCCATTGGAGTAAACCT 60.034 55.000 3.62 0.00 0.00 3.50
308 309 1.035385 CCGGCCCATTGGAGTAAACC 61.035 60.000 3.62 0.00 0.00 3.27
309 310 1.663379 GCCGGCCCATTGGAGTAAAC 61.663 60.000 18.11 0.00 0.00 2.01
310 311 1.379309 GCCGGCCCATTGGAGTAAA 60.379 57.895 18.11 0.00 0.00 2.01
311 312 2.274104 GCCGGCCCATTGGAGTAA 59.726 61.111 18.11 0.00 0.00 2.24
312 313 3.804329 GGCCGGCCCATTGGAGTA 61.804 66.667 36.64 0.00 0.00 2.59
339 340 2.202623 CCTCTACGCACAGACCGC 60.203 66.667 0.00 0.00 0.00 5.68
340 341 2.202623 GCCTCTACGCACAGACCG 60.203 66.667 0.00 0.00 0.00 4.79
341 342 2.202623 CGCCTCTACGCACAGACC 60.203 66.667 0.00 0.00 0.00 3.85
342 343 1.514443 GACGCCTCTACGCACAGAC 60.514 63.158 0.00 0.00 36.19 3.51
343 344 1.674651 AGACGCCTCTACGCACAGA 60.675 57.895 0.00 0.00 36.19 3.41
344 345 1.515088 CAGACGCCTCTACGCACAG 60.515 63.158 0.00 0.00 36.19 3.66
345 346 1.802337 AACAGACGCCTCTACGCACA 61.802 55.000 0.00 0.00 36.19 4.57
346 347 0.666577 AAACAGACGCCTCTACGCAC 60.667 55.000 0.00 0.00 36.19 5.34
347 348 0.666274 CAAACAGACGCCTCTACGCA 60.666 55.000 0.00 0.00 36.19 5.24
348 349 1.956620 GCAAACAGACGCCTCTACGC 61.957 60.000 0.00 0.00 36.19 4.42
349 350 1.352156 GGCAAACAGACGCCTCTACG 61.352 60.000 0.00 0.00 45.29 3.51
350 351 1.352156 CGGCAAACAGACGCCTCTAC 61.352 60.000 0.00 0.00 45.03 2.59
351 352 1.080093 CGGCAAACAGACGCCTCTA 60.080 57.895 0.00 0.00 45.03 2.43
352 353 2.357517 CGGCAAACAGACGCCTCT 60.358 61.111 0.00 0.00 45.03 3.69
358 359 1.548986 GCATTATGCGGCAAACAGAC 58.451 50.000 6.82 0.00 31.71 3.51
369 370 3.751175 TGCTCCTATTTACCGCATTATGC 59.249 43.478 7.19 7.19 40.69 3.14
370 371 4.154195 GGTGCTCCTATTTACCGCATTATG 59.846 45.833 0.00 0.00 32.75 1.90
371 372 4.324267 GGTGCTCCTATTTACCGCATTAT 58.676 43.478 0.00 0.00 32.75 1.28
372 373 3.495453 GGGTGCTCCTATTTACCGCATTA 60.495 47.826 4.53 0.00 34.01 1.90
373 374 2.572290 GGTGCTCCTATTTACCGCATT 58.428 47.619 0.00 0.00 32.75 3.56
374 375 1.202770 GGGTGCTCCTATTTACCGCAT 60.203 52.381 4.53 0.00 34.01 4.73
375 376 0.179468 GGGTGCTCCTATTTACCGCA 59.821 55.000 4.53 0.00 34.01 5.69
376 377 0.534427 GGGGTGCTCCTATTTACCGC 60.534 60.000 4.53 0.00 38.66 5.68
377 378 0.834612 TGGGGTGCTCCTATTTACCG 59.165 55.000 4.53 0.00 34.01 4.02
378 379 3.375647 TTTGGGGTGCTCCTATTTACC 57.624 47.619 4.53 0.00 35.33 2.85
379 380 6.039382 CAGTATTTTGGGGTGCTCCTATTTAC 59.961 42.308 4.53 1.01 35.33 2.01
380 381 6.126409 CAGTATTTTGGGGTGCTCCTATTTA 58.874 40.000 4.53 0.00 35.33 1.40
381 382 4.956075 CAGTATTTTGGGGTGCTCCTATTT 59.044 41.667 4.53 0.00 35.33 1.40
382 383 4.017499 ACAGTATTTTGGGGTGCTCCTATT 60.017 41.667 4.53 0.00 35.33 1.73
383 384 3.527665 ACAGTATTTTGGGGTGCTCCTAT 59.472 43.478 4.53 0.00 35.33 2.57
384 385 2.916934 ACAGTATTTTGGGGTGCTCCTA 59.083 45.455 4.53 0.00 35.33 2.94
385 386 1.710809 ACAGTATTTTGGGGTGCTCCT 59.289 47.619 4.53 0.00 35.33 3.69
386 387 2.092323 GACAGTATTTTGGGGTGCTCC 58.908 52.381 0.00 0.00 0.00 4.70
387 388 3.010420 GAGACAGTATTTTGGGGTGCTC 58.990 50.000 0.00 0.00 0.00 4.26
388 389 2.375174 TGAGACAGTATTTTGGGGTGCT 59.625 45.455 0.00 0.00 0.00 4.40
389 390 2.749621 CTGAGACAGTATTTTGGGGTGC 59.250 50.000 0.00 0.00 0.00 5.01
390 391 2.749621 GCTGAGACAGTATTTTGGGGTG 59.250 50.000 0.00 0.00 33.43 4.61
391 392 2.375174 TGCTGAGACAGTATTTTGGGGT 59.625 45.455 0.00 0.00 33.43 4.95
392 393 3.012518 CTGCTGAGACAGTATTTTGGGG 58.987 50.000 0.00 0.00 33.43 4.96
393 394 3.012518 CCTGCTGAGACAGTATTTTGGG 58.987 50.000 0.00 0.00 35.83 4.12
394 395 2.421424 GCCTGCTGAGACAGTATTTTGG 59.579 50.000 0.00 0.00 35.83 3.28
395 396 3.126514 CAGCCTGCTGAGACAGTATTTTG 59.873 47.826 13.85 0.00 46.30 2.44
396 397 3.244700 ACAGCCTGCTGAGACAGTATTTT 60.245 43.478 24.88 0.00 46.30 1.82
397 398 2.304180 ACAGCCTGCTGAGACAGTATTT 59.696 45.455 24.88 0.00 46.30 1.40
398 399 1.905215 ACAGCCTGCTGAGACAGTATT 59.095 47.619 24.88 0.00 46.30 1.89
399 400 1.206610 CACAGCCTGCTGAGACAGTAT 59.793 52.381 24.88 0.00 46.30 2.12
400 401 0.605083 CACAGCCTGCTGAGACAGTA 59.395 55.000 24.88 0.00 46.30 2.74
401 402 1.370437 CACAGCCTGCTGAGACAGT 59.630 57.895 24.88 0.00 46.30 3.55
402 403 1.375652 CCACAGCCTGCTGAGACAG 60.376 63.158 24.88 9.10 46.30 3.51
403 404 1.838396 TCCACAGCCTGCTGAGACA 60.838 57.895 24.88 5.28 46.30 3.41
404 405 1.375268 GTCCACAGCCTGCTGAGAC 60.375 63.158 24.88 23.05 46.30 3.36
405 406 2.587247 GGTCCACAGCCTGCTGAGA 61.587 63.158 24.88 17.05 46.30 3.27
406 407 2.046507 GGTCCACAGCCTGCTGAG 60.047 66.667 24.88 16.89 46.30 3.35
407 408 4.007644 CGGTCCACAGCCTGCTGA 62.008 66.667 24.88 0.32 46.30 4.26
440 441 4.660938 GCCCGGTCCAAAGCCTGT 62.661 66.667 0.00 0.00 0.00 4.00
472 473 1.206523 GACGCCGTTATACAAGAGGC 58.793 55.000 0.00 0.00 44.00 4.70
473 474 2.190981 GTGACGCCGTTATACAAGAGG 58.809 52.381 0.00 0.00 0.00 3.69
474 475 1.844357 CGTGACGCCGTTATACAAGAG 59.156 52.381 0.00 0.00 0.00 2.85
475 476 1.468127 TCGTGACGCCGTTATACAAGA 59.532 47.619 0.00 0.00 0.00 3.02
476 477 1.580704 GTCGTGACGCCGTTATACAAG 59.419 52.381 0.00 0.00 0.00 3.16
477 478 1.199789 AGTCGTGACGCCGTTATACAA 59.800 47.619 0.00 0.00 36.20 2.41
478 479 0.804364 AGTCGTGACGCCGTTATACA 59.196 50.000 0.00 0.00 36.20 2.29
479 480 1.186030 CAGTCGTGACGCCGTTATAC 58.814 55.000 0.00 0.00 36.20 1.47
480 481 1.063027 CTCAGTCGTGACGCCGTTATA 59.937 52.381 0.00 0.00 36.20 0.98
481 482 0.179171 CTCAGTCGTGACGCCGTTAT 60.179 55.000 0.00 0.00 36.20 1.89
482 483 1.208358 CTCAGTCGTGACGCCGTTA 59.792 57.895 0.00 0.00 36.20 3.18
646 647 8.746922 TTGTTTCAGTAATACTACGTACAAGG 57.253 34.615 0.00 0.00 32.87 3.61
663 664 1.180029 CTGCCCCCAGATTGTTTCAG 58.820 55.000 0.00 0.00 41.77 3.02
786 803 0.178068 CAGACACGGGATAAGTGGGG 59.822 60.000 0.00 0.00 43.41 4.96
790 807 0.902531 CCCACAGACACGGGATAAGT 59.097 55.000 0.00 0.00 46.34 2.24
926 943 0.652592 GCCAGTAATAGCACAGCACG 59.347 55.000 0.00 0.00 0.00 5.34
958 975 2.543861 CCTACCAGTGACCGATGATTCG 60.544 54.545 0.00 0.00 45.08 3.34
971 988 0.251474 TACACGTGCCTCCTACCAGT 60.251 55.000 17.22 0.00 0.00 4.00
1042 1061 2.287188 CGAGTTCACAGCTGTTGCAAAT 60.287 45.455 18.94 9.61 42.74 2.32
1121 1140 2.226330 TCACAAAATAGGCTTGCGTGT 58.774 42.857 0.00 0.00 0.00 4.49
1132 1151 5.674525 TGGTGCACCAAAATTCACAAAATA 58.325 33.333 36.10 6.71 44.35 1.40
1177 1196 6.539826 TGGAGCTCATGAAACAACATAGTATG 59.460 38.462 17.19 8.66 0.00 2.39
1244 1265 8.413229 GTTTCACAAAATAGCCCATATGTATGT 58.587 33.333 1.24 0.00 31.82 2.29
1357 1378 8.615878 TGTTAGCTAAAGTTTTATTCTGCTCA 57.384 30.769 7.99 0.00 0.00 4.26
1408 1429 9.104965 TGCAGTTTGTCTTATTTATTATACGCT 57.895 29.630 0.00 0.00 0.00 5.07
1485 1506 6.132056 CGATGTCAAGAAAGTTCAGAAACTG 58.868 40.000 0.00 0.00 45.07 3.16
1494 1515 1.537202 GCTGCCGATGTCAAGAAAGTT 59.463 47.619 0.00 0.00 0.00 2.66
1563 1584 1.654023 CCGGATTTGCTCCCGTTTCC 61.654 60.000 0.00 0.00 43.93 3.13
1565 1586 0.538746 AACCGGATTTGCTCCCGTTT 60.539 50.000 9.46 0.00 41.07 3.60
1581 1602 2.961526 TCAGACGGCTAAGATCAACC 57.038 50.000 0.00 0.00 0.00 3.77
1763 1784 6.530120 ACTGACAAACACATGGAACTGTATA 58.470 36.000 0.00 0.00 0.00 1.47
1812 1833 6.900568 CAAACTTGGAAACATTAACAAGCA 57.099 33.333 0.00 0.00 42.97 3.91
1943 1964 2.092914 AGCAGCGTTAGGGCTAATTTCT 60.093 45.455 0.00 0.00 42.53 2.52
1960 1981 3.284617 TCCATTCCACATTCATCAGCAG 58.715 45.455 0.00 0.00 0.00 4.24
2027 2055 3.199677 TGGTTATTTCCATAGAACCGCG 58.800 45.455 0.00 0.00 43.60 6.46
2125 2153 5.871324 AAAGTATTTGGAAGAACCCCCTA 57.129 39.130 0.00 0.00 36.60 3.53
2126 2154 4.759793 AAAGTATTTGGAAGAACCCCCT 57.240 40.909 0.00 0.00 36.60 4.79
2217 2245 7.888021 TGTTTATCCCATGAGTTAACTGATTGT 59.112 33.333 14.14 0.00 0.00 2.71
2303 2331 1.550976 GTCGTCCTCCATTGGTCTCTT 59.449 52.381 1.86 0.00 0.00 2.85
2980 3026 4.387026 TTCCATCCATGTTCCAGTCTTT 57.613 40.909 0.00 0.00 0.00 2.52
3172 3218 0.031178 CCTTGTTGCGCTTTGCTTCT 59.969 50.000 9.73 0.00 46.63 2.85
3641 3693 1.940883 TAAGATGCTCCGTTCGCCGT 61.941 55.000 0.00 0.00 33.66 5.68
4118 5097 3.325716 TCTGACTAACCCAACACTAACCC 59.674 47.826 0.00 0.00 0.00 4.11
4119 5098 4.282703 TCTCTGACTAACCCAACACTAACC 59.717 45.833 0.00 0.00 0.00 2.85
4120 5099 5.464030 TCTCTGACTAACCCAACACTAAC 57.536 43.478 0.00 0.00 0.00 2.34
4121 5100 5.510861 GCTTCTCTGACTAACCCAACACTAA 60.511 44.000 0.00 0.00 0.00 2.24
4123 5102 3.244249 GCTTCTCTGACTAACCCAACACT 60.244 47.826 0.00 0.00 0.00 3.55
4124 5103 3.067833 GCTTCTCTGACTAACCCAACAC 58.932 50.000 0.00 0.00 0.00 3.32
4126 5105 3.402628 TGCTTCTCTGACTAACCCAAC 57.597 47.619 0.00 0.00 0.00 3.77
4127 5106 3.327757 ACATGCTTCTCTGACTAACCCAA 59.672 43.478 0.00 0.00 0.00 4.12
4128 5107 2.906389 ACATGCTTCTCTGACTAACCCA 59.094 45.455 0.00 0.00 0.00 4.51
4209 5216 2.104792 ACTAAACCTGCAAGCACTCAGA 59.895 45.455 0.00 0.00 32.26 3.27
4423 7541 7.094975 CCCGTCAGAATGTAACAAGAATAAACA 60.095 37.037 0.00 0.00 37.40 2.83
4424 7542 7.241376 CCCGTCAGAATGTAACAAGAATAAAC 58.759 38.462 0.00 0.00 37.40 2.01
4432 7550 2.851263 AGCCCGTCAGAATGTAACAA 57.149 45.000 0.00 0.00 37.40 2.83
4433 7551 3.965379 TTAGCCCGTCAGAATGTAACA 57.035 42.857 0.00 0.00 37.40 2.41
4437 7555 1.065491 TGCATTAGCCCGTCAGAATGT 60.065 47.619 0.00 0.00 41.13 2.71
4445 7563 1.340017 ACTGAATGTGCATTAGCCCGT 60.340 47.619 0.00 0.00 41.13 5.28
4481 7599 3.531538 ACGGGTATAGCACATGTTCTTG 58.468 45.455 2.60 0.00 0.00 3.02
4535 7654 6.202516 TCGTGTCAATTTGGTCTTCTTTTT 57.797 33.333 0.00 0.00 0.00 1.94
4547 7666 6.483307 TCTTGTTCTTCTGATCGTGTCAATTT 59.517 34.615 0.00 0.00 36.14 1.82
4562 7681 4.187694 CCCAGCTCTACATCTTGTTCTTC 58.812 47.826 0.00 0.00 0.00 2.87


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.