Multiple sequence alignment - TraesCS5D01G487100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G487100 chr5D 100.000 4262 0 0 1683 5944 522138600 522142861 0.000000e+00 7871.0
1 TraesCS5D01G487100 chr5D 100.000 812 0 0 296 1107 522137213 522138024 0.000000e+00 1500.0
2 TraesCS5D01G487100 chr5D 100.000 130 0 0 1 130 522136918 522137047 2.140000e-59 241.0
3 TraesCS5D01G487100 chr5A 95.252 2717 88 14 2524 5217 650270909 650273607 0.000000e+00 4265.0
4 TraesCS5D01G487100 chr5A 97.704 784 18 0 1683 2466 650269936 650270719 0.000000e+00 1349.0
5 TraesCS5D01G487100 chr5A 88.362 232 21 5 5000 5226 650283501 650283731 2.110000e-69 274.0
6 TraesCS5D01G487100 chr5A 89.286 196 12 3 916 1107 650269609 650269799 2.770000e-58 237.0
7 TraesCS5D01G487100 chr5A 81.695 295 24 16 518 784 650269235 650269527 1.000000e-52 219.0
8 TraesCS5D01G487100 chr5A 97.368 114 3 0 5225 5338 656477313 656477426 1.690000e-45 195.0
9 TraesCS5D01G487100 chr5A 87.952 166 15 3 5637 5797 650284059 650284224 2.190000e-44 191.0
10 TraesCS5D01G487100 chr5A 89.437 142 11 2 5456 5596 650283910 650284048 6.120000e-40 176.0
11 TraesCS5D01G487100 chr5A 86.061 165 12 5 5333 5486 650273619 650273783 3.680000e-37 167.0
12 TraesCS5D01G487100 chr5A 95.349 43 2 0 5571 5613 650273800 650273842 1.070000e-07 69.4
13 TraesCS5D01G487100 chr5B 96.003 2352 69 10 1683 4022 658451155 658453493 0.000000e+00 3799.0
14 TraesCS5D01G487100 chr5B 93.317 1242 53 11 3991 5226 658453509 658454726 0.000000e+00 1807.0
15 TraesCS5D01G487100 chr5B 85.748 842 57 26 301 1107 658449814 658450627 0.000000e+00 832.0
16 TraesCS5D01G487100 chr5B 95.763 118 4 1 5220 5337 710922393 710922509 7.860000e-44 189.0
17 TraesCS5D01G487100 chr5B 88.750 80 3 2 5330 5404 658454723 658454801 6.340000e-15 93.5
18 TraesCS5D01G487100 chr3B 94.702 151 5 2 5797 5944 795761648 795761798 1.290000e-56 231.0
19 TraesCS5D01G487100 chr3B 93.421 152 6 3 5795 5944 17908185 17908334 7.750000e-54 222.0
20 TraesCS5D01G487100 chr3B 85.714 98 14 0 4078 4175 752373331 752373428 2.930000e-18 104.0
21 TraesCS5D01G487100 chr1B 94.079 152 7 1 5795 5944 36975930 36976081 4.630000e-56 230.0
22 TraesCS5D01G487100 chr6B 94.000 150 6 2 5798 5944 75063086 75063235 2.160000e-54 224.0
23 TraesCS5D01G487100 chr6B 95.763 118 3 2 5225 5341 599445724 599445608 7.860000e-44 189.0
24 TraesCS5D01G487100 chr6B 92.424 132 9 1 5222 5352 197245670 197245539 2.830000e-43 187.0
25 TraesCS5D01G487100 chr2A 94.521 146 6 1 5799 5944 573274912 573275055 2.160000e-54 224.0
26 TraesCS5D01G487100 chr2A 84.080 201 21 8 444 643 418404499 418404689 3.660000e-42 183.0
27 TraesCS5D01G487100 chr2D 92.254 142 8 2 5803 5943 277277932 277277793 1.310000e-46 198.0
28 TraesCS5D01G487100 chr2D 84.080 201 21 7 444 643 316662147 316662337 3.660000e-42 183.0
29 TraesCS5D01G487100 chr6A 97.391 115 2 1 5218 5331 408886069 408886183 1.690000e-45 195.0
30 TraesCS5D01G487100 chr7D 96.552 116 4 0 5219 5334 174803261 174803146 6.080000e-45 193.0
31 TraesCS5D01G487100 chr7D 82.673 202 24 7 446 646 393625083 393624892 1.020000e-37 169.0
32 TraesCS5D01G487100 chr7D 87.805 82 10 0 4079 4160 261818684 261818603 4.900000e-16 97.1
33 TraesCS5D01G487100 chr2B 95.833 120 3 2 5218 5336 25365977 25366095 6.080000e-45 193.0
34 TraesCS5D01G487100 chr2B 82.927 205 23 8 444 646 384650893 384650699 2.200000e-39 174.0
35 TraesCS5D01G487100 chr7B 94.355 124 6 1 5224 5347 450588030 450588152 7.860000e-44 189.0
36 TraesCS5D01G487100 chr7B 86.364 110 14 1 4074 4182 685247155 685247264 1.050000e-22 119.0
37 TraesCS5D01G487100 chr3A 96.429 112 4 0 5225 5336 638982432 638982543 1.020000e-42 185.0
38 TraesCS5D01G487100 chr3A 82.160 213 25 9 436 646 23631552 23631351 2.850000e-38 171.0
39 TraesCS5D01G487100 chr1D 83.251 203 23 7 445 646 309182224 309182032 6.120000e-40 176.0
40 TraesCS5D01G487100 chr1A 82.938 211 20 11 437 643 498534229 498534427 6.120000e-40 176.0
41 TraesCS5D01G487100 chr1A 96.774 31 1 0 4148 4178 72539383 72539353 1.100000e-02 52.8
42 TraesCS5D01G487100 chr6D 81.818 209 26 8 442 648 454820411 454820609 1.330000e-36 165.0
43 TraesCS5D01G487100 chr7A 86.792 106 14 0 4071 4176 581374353 581374248 1.050000e-22 119.0
44 TraesCS5D01G487100 chr3D 86.735 98 12 1 4078 4175 590122379 590122283 2.270000e-19 108.0
45 TraesCS5D01G487100 chr3D 81.395 129 21 3 4069 4196 305448556 305448682 1.050000e-17 102.0
46 TraesCS5D01G487100 chr3D 86.170 94 13 0 4079 4172 448432970 448432877 1.050000e-17 102.0
47 TraesCS5D01G487100 chr4D 100.000 28 0 0 5635 5662 481915240 481915267 1.100000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G487100 chr5D 522136918 522142861 5943 False 3204.000000 7871 100.000000 1 5944 3 chr5D.!!$F1 5943
1 TraesCS5D01G487100 chr5A 650269235 650273842 4607 False 1051.066667 4265 90.891167 518 5613 6 chr5A.!!$F2 5095
2 TraesCS5D01G487100 chr5A 650283501 650284224 723 False 213.666667 274 88.583667 5000 5797 3 chr5A.!!$F3 797
3 TraesCS5D01G487100 chr5B 658449814 658454801 4987 False 1632.875000 3799 90.954500 301 5404 4 chr5B.!!$F2 5103

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
866 918 0.040692 GCCACCCTTTCGTTTCGTTC 60.041 55.000 0.00 0.0 0.00 3.95 F
905 957 0.161024 GCACGGAGACTTTCGTTTCG 59.839 55.000 2.65 0.0 37.53 3.46 F
913 965 0.881600 ACTTTCGTTTCGTTCCCCCG 60.882 55.000 0.00 0.0 0.00 5.73 F
914 966 1.571215 CTTTCGTTTCGTTCCCCCGG 61.571 60.000 0.00 0.0 0.00 5.73 F
2432 2507 3.845781 TCTGGCTAAATGAGGTGATCC 57.154 47.619 0.00 0.0 0.00 3.36 F
3108 3327 0.318699 TGTGACTGTGTACTGCGCTC 60.319 55.000 9.73 0.0 0.00 5.03 F
4106 4370 2.094078 TCCGGTCCGAATTAAATGACGT 60.094 45.455 14.39 0.0 0.00 4.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1726 1801 1.613630 GGTGAGGAGGAAGGAGGCA 60.614 63.158 0.00 0.00 0.00 4.75 R
2236 2311 1.975363 GCAGCACCAGCAGATCGAAC 61.975 60.000 0.00 0.00 45.49 3.95 R
2504 2588 2.026262 TCTGCCCCCTCAATTAGACAAC 60.026 50.000 0.00 0.00 0.00 3.32 R
2708 2924 2.238646 ACCTCACTCACAACAGTTGGAA 59.761 45.455 17.76 4.16 34.12 3.53 R
3752 3971 1.486310 TGTGACTTGCTCTGGACAACT 59.514 47.619 0.00 0.00 0.00 3.16 R
4787 5068 0.530870 GGCGCAGGTACTTCATCCTC 60.531 60.000 10.83 0.00 34.60 3.71 R
5923 6272 0.035820 TCAACACTAATCGCCACCCC 60.036 55.000 0.00 0.00 0.00 4.95 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 5.722021 AAGTCAACAAAAGGTTTGACAGT 57.278 34.783 14.93 2.15 38.69 3.55
24 25 5.722021 AGTCAACAAAAGGTTTGACAGTT 57.278 34.783 14.93 0.00 38.69 3.16
25 26 6.827586 AGTCAACAAAAGGTTTGACAGTTA 57.172 33.333 14.93 0.00 38.69 2.24
26 27 7.222000 AGTCAACAAAAGGTTTGACAGTTAA 57.778 32.000 14.93 0.00 38.69 2.01
27 28 7.836842 AGTCAACAAAAGGTTTGACAGTTAAT 58.163 30.769 14.93 0.00 38.69 1.40
28 29 7.759433 AGTCAACAAAAGGTTTGACAGTTAATG 59.241 33.333 14.93 0.00 38.69 1.90
29 30 6.533367 TCAACAAAAGGTTTGACAGTTAATGC 59.467 34.615 7.68 0.00 37.72 3.56
30 31 5.040635 ACAAAAGGTTTGACAGTTAATGCG 58.959 37.500 7.68 0.00 0.00 4.73
31 32 5.163602 ACAAAAGGTTTGACAGTTAATGCGA 60.164 36.000 7.68 0.00 0.00 5.10
32 33 5.705609 AAAGGTTTGACAGTTAATGCGAT 57.294 34.783 0.00 0.00 0.00 4.58
33 34 5.705609 AAGGTTTGACAGTTAATGCGATT 57.294 34.783 0.00 0.00 0.00 3.34
34 35 5.705609 AGGTTTGACAGTTAATGCGATTT 57.294 34.783 0.00 0.00 0.00 2.17
35 36 6.811253 AGGTTTGACAGTTAATGCGATTTA 57.189 33.333 0.00 0.00 0.00 1.40
36 37 7.209471 AGGTTTGACAGTTAATGCGATTTAA 57.791 32.000 0.00 0.00 0.00 1.52
37 38 7.653647 AGGTTTGACAGTTAATGCGATTTAAA 58.346 30.769 0.00 0.00 0.00 1.52
38 39 8.138712 AGGTTTGACAGTTAATGCGATTTAAAA 58.861 29.630 0.00 0.00 0.00 1.52
39 40 8.756864 GGTTTGACAGTTAATGCGATTTAAAAA 58.243 29.630 0.00 0.00 0.00 1.94
85 86 5.993748 AAAAACCAAAACCAAGAGAGACA 57.006 34.783 0.00 0.00 0.00 3.41
86 87 5.582689 AAAACCAAAACCAAGAGAGACAG 57.417 39.130 0.00 0.00 0.00 3.51
87 88 3.214696 ACCAAAACCAAGAGAGACAGG 57.785 47.619 0.00 0.00 0.00 4.00
88 89 2.158608 ACCAAAACCAAGAGAGACAGGG 60.159 50.000 0.00 0.00 0.00 4.45
89 90 2.508526 CAAAACCAAGAGAGACAGGGG 58.491 52.381 0.00 0.00 0.00 4.79
90 91 1.068121 AAACCAAGAGAGACAGGGGG 58.932 55.000 0.00 0.00 0.00 5.40
91 92 0.193574 AACCAAGAGAGACAGGGGGA 59.806 55.000 0.00 0.00 0.00 4.81
92 93 0.193574 ACCAAGAGAGACAGGGGGAA 59.806 55.000 0.00 0.00 0.00 3.97
93 94 1.362224 CCAAGAGAGACAGGGGGAAA 58.638 55.000 0.00 0.00 0.00 3.13
94 95 1.280421 CCAAGAGAGACAGGGGGAAAG 59.720 57.143 0.00 0.00 0.00 2.62
95 96 1.981495 CAAGAGAGACAGGGGGAAAGT 59.019 52.381 0.00 0.00 0.00 2.66
96 97 3.173965 CAAGAGAGACAGGGGGAAAGTA 58.826 50.000 0.00 0.00 0.00 2.24
97 98 3.777522 CAAGAGAGACAGGGGGAAAGTAT 59.222 47.826 0.00 0.00 0.00 2.12
98 99 3.379452 AGAGAGACAGGGGGAAAGTATG 58.621 50.000 0.00 0.00 0.00 2.39
99 100 3.108376 GAGAGACAGGGGGAAAGTATGT 58.892 50.000 0.00 0.00 0.00 2.29
100 101 4.016479 AGAGAGACAGGGGGAAAGTATGTA 60.016 45.833 0.00 0.00 0.00 2.29
101 102 4.695606 AGAGACAGGGGGAAAGTATGTAA 58.304 43.478 0.00 0.00 0.00 2.41
102 103 4.717280 AGAGACAGGGGGAAAGTATGTAAG 59.283 45.833 0.00 0.00 0.00 2.34
103 104 3.780850 AGACAGGGGGAAAGTATGTAAGG 59.219 47.826 0.00 0.00 0.00 2.69
104 105 3.522343 GACAGGGGGAAAGTATGTAAGGT 59.478 47.826 0.00 0.00 0.00 3.50
105 106 3.522343 ACAGGGGGAAAGTATGTAAGGTC 59.478 47.826 0.00 0.00 0.00 3.85
106 107 3.521937 CAGGGGGAAAGTATGTAAGGTCA 59.478 47.826 0.00 0.00 0.00 4.02
107 108 4.018779 CAGGGGGAAAGTATGTAAGGTCAA 60.019 45.833 0.00 0.00 0.00 3.18
108 109 4.227527 AGGGGGAAAGTATGTAAGGTCAAG 59.772 45.833 0.00 0.00 0.00 3.02
109 110 4.524053 GGGGAAAGTATGTAAGGTCAAGG 58.476 47.826 0.00 0.00 0.00 3.61
110 111 4.226620 GGGGAAAGTATGTAAGGTCAAGGA 59.773 45.833 0.00 0.00 0.00 3.36
111 112 5.104067 GGGGAAAGTATGTAAGGTCAAGGAT 60.104 44.000 0.00 0.00 0.00 3.24
112 113 5.823045 GGGAAAGTATGTAAGGTCAAGGATG 59.177 44.000 0.00 0.00 0.00 3.51
113 114 6.352737 GGGAAAGTATGTAAGGTCAAGGATGA 60.353 42.308 0.00 0.00 0.00 2.92
114 115 6.763610 GGAAAGTATGTAAGGTCAAGGATGAG 59.236 42.308 0.00 0.00 35.88 2.90
115 116 7.364762 GGAAAGTATGTAAGGTCAAGGATGAGA 60.365 40.741 0.00 0.00 35.88 3.27
116 117 7.682787 AAGTATGTAAGGTCAAGGATGAGAT 57.317 36.000 0.00 0.00 35.88 2.75
117 118 8.783660 AAGTATGTAAGGTCAAGGATGAGATA 57.216 34.615 0.00 0.00 35.88 1.98
118 119 8.415950 AGTATGTAAGGTCAAGGATGAGATAG 57.584 38.462 0.00 0.00 35.88 2.08
119 120 8.228206 AGTATGTAAGGTCAAGGATGAGATAGA 58.772 37.037 0.00 0.00 35.88 1.98
120 121 6.716934 TGTAAGGTCAAGGATGAGATAGAC 57.283 41.667 0.00 0.00 35.88 2.59
121 122 5.598830 TGTAAGGTCAAGGATGAGATAGACC 59.401 44.000 0.00 0.00 44.43 3.85
122 123 4.271807 AGGTCAAGGATGAGATAGACCA 57.728 45.455 11.48 0.00 46.03 4.02
123 124 3.964031 AGGTCAAGGATGAGATAGACCAC 59.036 47.826 11.48 0.00 46.03 4.16
124 125 3.706594 GGTCAAGGATGAGATAGACCACA 59.293 47.826 0.00 0.00 43.74 4.17
125 126 4.346418 GGTCAAGGATGAGATAGACCACAT 59.654 45.833 0.00 0.00 43.74 3.21
126 127 5.540337 GGTCAAGGATGAGATAGACCACATA 59.460 44.000 0.00 0.00 43.74 2.29
127 128 6.212388 GGTCAAGGATGAGATAGACCACATAT 59.788 42.308 0.00 0.00 43.74 1.78
128 129 7.256475 GGTCAAGGATGAGATAGACCACATATT 60.256 40.741 0.00 0.00 43.74 1.28
129 130 7.816995 GTCAAGGATGAGATAGACCACATATTC 59.183 40.741 0.00 0.00 35.88 1.75
355 356 5.495640 TCATTCCAAAACCAACAAAAGCTT 58.504 33.333 0.00 0.00 0.00 3.74
360 361 6.801575 TCCAAAACCAACAAAAGCTTAGTAG 58.198 36.000 0.00 0.23 0.00 2.57
373 374 9.786105 CAAAAGCTTAGTAGAGTAGTACCTAAC 57.214 37.037 0.00 0.00 0.00 2.34
413 414 3.488721 GCAGCCATGTTCTCATTCATCAC 60.489 47.826 0.00 0.00 31.15 3.06
419 420 6.183360 GCCATGTTCTCATTCATCACCATTTA 60.183 38.462 0.00 0.00 31.15 1.40
455 456 8.294954 AGTACCATCATATAATACTCCCTTCG 57.705 38.462 0.00 0.00 0.00 3.79
457 458 6.023603 ACCATCATATAATACTCCCTTCGGT 58.976 40.000 0.00 0.00 0.00 4.69
464 465 4.652679 AATACTCCCTTCGGTCCTTTTT 57.347 40.909 0.00 0.00 0.00 1.94
466 467 3.413846 ACTCCCTTCGGTCCTTTTTAC 57.586 47.619 0.00 0.00 0.00 2.01
623 624 9.778741 ATGGTATTGATTTCGTATTGTAGATGT 57.221 29.630 0.00 0.00 0.00 3.06
664 693 9.908152 ATAAAATTTGAAGTAAAAAGGACCGAG 57.092 29.630 0.00 0.00 0.00 4.63
678 707 3.095332 GGACCGAGGGAGTACTAAAAGT 58.905 50.000 0.00 0.00 0.00 2.66
679 708 4.018050 AGGACCGAGGGAGTACTAAAAGTA 60.018 45.833 0.00 0.00 0.00 2.24
680 709 4.892345 GGACCGAGGGAGTACTAAAAGTAT 59.108 45.833 0.00 0.00 32.65 2.12
681 710 5.362143 GGACCGAGGGAGTACTAAAAGTATT 59.638 44.000 0.00 0.00 32.65 1.89
682 711 6.547510 GGACCGAGGGAGTACTAAAAGTATTA 59.452 42.308 0.00 0.00 32.65 0.98
683 712 7.232330 GGACCGAGGGAGTACTAAAAGTATTAT 59.768 40.741 0.00 0.00 32.65 1.28
684 713 9.289782 GACCGAGGGAGTACTAAAAGTATTATA 57.710 37.037 0.00 0.00 32.65 0.98
685 714 9.646522 ACCGAGGGAGTACTAAAAGTATTATAA 57.353 33.333 0.00 0.00 32.65 0.98
686 715 9.905171 CCGAGGGAGTACTAAAAGTATTATAAC 57.095 37.037 0.00 0.00 32.65 1.89
687 716 9.905171 CGAGGGAGTACTAAAAGTATTATAACC 57.095 37.037 0.00 0.00 32.65 2.85
848 900 1.739562 CAACTCACGCAGGAGGAGC 60.740 63.158 6.57 0.00 39.27 4.70
849 901 2.948720 AACTCACGCAGGAGGAGCC 61.949 63.158 6.57 0.00 39.27 4.70
852 904 4.767255 CACGCAGGAGGAGCCACC 62.767 72.222 0.00 0.00 40.02 4.61
855 907 3.334054 GCAGGAGGAGCCACCCTT 61.334 66.667 0.00 0.00 40.02 3.95
856 908 2.911926 GCAGGAGGAGCCACCCTTT 61.912 63.158 0.00 0.00 40.02 3.11
857 909 1.301293 CAGGAGGAGCCACCCTTTC 59.699 63.158 0.00 0.00 40.02 2.62
858 910 2.269241 GGAGGAGCCACCCTTTCG 59.731 66.667 0.00 0.00 40.05 3.46
859 911 2.593956 GGAGGAGCCACCCTTTCGT 61.594 63.158 0.00 0.00 40.05 3.85
860 912 1.375326 GAGGAGCCACCCTTTCGTT 59.625 57.895 0.00 0.00 40.05 3.85
861 913 0.250770 GAGGAGCCACCCTTTCGTTT 60.251 55.000 0.00 0.00 40.05 3.60
862 914 0.250770 AGGAGCCACCCTTTCGTTTC 60.251 55.000 0.00 0.00 40.05 2.78
863 915 1.574702 GGAGCCACCCTTTCGTTTCG 61.575 60.000 0.00 0.00 0.00 3.46
864 916 0.883370 GAGCCACCCTTTCGTTTCGT 60.883 55.000 0.00 0.00 0.00 3.85
865 917 0.464916 AGCCACCCTTTCGTTTCGTT 60.465 50.000 0.00 0.00 0.00 3.85
866 918 0.040692 GCCACCCTTTCGTTTCGTTC 60.041 55.000 0.00 0.00 0.00 3.95
867 919 0.589708 CCACCCTTTCGTTTCGTTCC 59.410 55.000 0.00 0.00 0.00 3.62
890 942 1.539776 GGTTTCGCAGCAAAAGCACG 61.540 55.000 3.06 0.00 34.93 5.34
899 951 1.604278 AGCAAAAGCACGGAGACTTTC 59.396 47.619 0.00 0.00 36.70 2.62
902 954 1.949465 AAAGCACGGAGACTTTCGTT 58.051 45.000 2.65 0.00 37.53 3.85
903 955 1.949465 AAGCACGGAGACTTTCGTTT 58.051 45.000 2.65 0.00 37.53 3.60
904 956 1.499049 AGCACGGAGACTTTCGTTTC 58.501 50.000 2.65 0.00 37.53 2.78
905 957 0.161024 GCACGGAGACTTTCGTTTCG 59.839 55.000 2.65 0.00 37.53 3.46
906 958 1.484356 CACGGAGACTTTCGTTTCGT 58.516 50.000 2.65 0.00 37.53 3.85
910 962 1.797046 GGAGACTTTCGTTTCGTTCCC 59.203 52.381 0.00 0.00 0.00 3.97
911 963 1.797046 GAGACTTTCGTTTCGTTCCCC 59.203 52.381 0.00 0.00 0.00 4.81
913 965 0.881600 ACTTTCGTTTCGTTCCCCCG 60.882 55.000 0.00 0.00 0.00 5.73
914 966 1.571215 CTTTCGTTTCGTTCCCCCGG 61.571 60.000 0.00 0.00 0.00 5.73
2432 2507 3.845781 TCTGGCTAAATGAGGTGATCC 57.154 47.619 0.00 0.00 0.00 3.36
2504 2588 5.583495 TCGAATTTACCAAAACACCTGTTG 58.417 37.500 0.00 0.00 38.44 3.33
2547 2763 8.920665 GCAGATTTGTATTGTAGCTACTGATAG 58.079 37.037 23.84 9.77 0.00 2.08
2564 2780 9.632807 CTACTGATAGTTAACTTATCCATCTGC 57.367 37.037 14.49 0.00 0.00 4.26
2565 2781 8.023021 ACTGATAGTTAACTTATCCATCTGCA 57.977 34.615 14.49 0.00 0.00 4.41
2568 2784 9.851686 TGATAGTTAACTTATCCATCTGCATTT 57.148 29.630 14.49 0.00 0.00 2.32
2570 2786 6.799512 AGTTAACTTATCCATCTGCATTTGC 58.200 36.000 1.12 0.00 42.50 3.68
2593 2809 6.149308 TGCATGAGGTAGATTTTGTACTGTTG 59.851 38.462 0.00 0.00 0.00 3.33
2608 2824 8.676454 TTGTACTGTTGTGTGTTTGTAAAATC 57.324 30.769 0.00 0.00 0.00 2.17
2612 2828 7.382898 ACTGTTGTGTGTTTGTAAAATCCTTT 58.617 30.769 0.00 0.00 0.00 3.11
2613 2829 7.544217 ACTGTTGTGTGTTTGTAAAATCCTTTC 59.456 33.333 0.00 0.00 0.00 2.62
2616 2832 8.379902 GTTGTGTGTTTGTAAAATCCTTTCAAG 58.620 33.333 0.00 0.00 0.00 3.02
2617 2833 6.533367 TGTGTGTTTGTAAAATCCTTTCAAGC 59.467 34.615 0.00 0.00 0.00 4.01
2618 2834 6.533367 GTGTGTTTGTAAAATCCTTTCAAGCA 59.467 34.615 0.00 0.00 0.00 3.91
2619 2835 7.064016 GTGTGTTTGTAAAATCCTTTCAAGCAA 59.936 33.333 0.00 0.00 31.52 3.91
2620 2836 7.277539 TGTGTTTGTAAAATCCTTTCAAGCAAG 59.722 33.333 0.00 0.00 31.52 4.01
2621 2837 6.257630 TGTTTGTAAAATCCTTTCAAGCAAGC 59.742 34.615 0.00 0.00 29.23 4.01
2622 2838 5.528043 TGTAAAATCCTTTCAAGCAAGCA 57.472 34.783 0.00 0.00 0.00 3.91
2623 2839 5.911752 TGTAAAATCCTTTCAAGCAAGCAA 58.088 33.333 0.00 0.00 0.00 3.91
2666 2882 8.226543 TCTCAATCAAATGCGTTACAATTTTC 57.773 30.769 0.00 0.00 0.00 2.29
2677 2893 5.735070 GCGTTACAATTTTCTTCAACCAGGT 60.735 40.000 0.00 0.00 0.00 4.00
2691 2907 6.620877 TCAACCAGGTCTCATTGTATAGTT 57.379 37.500 0.00 0.00 0.00 2.24
2697 2913 7.092891 ACCAGGTCTCATTGTATAGTTGATTCA 60.093 37.037 0.00 0.00 0.00 2.57
2708 2924 8.565896 TGTATAGTTGATTCACATCTGCTTTT 57.434 30.769 0.00 0.00 31.88 2.27
2720 2937 4.160252 ACATCTGCTTTTTCCAACTGTTGT 59.840 37.500 18.38 0.00 0.00 3.32
3106 3325 0.597637 ACTGTGACTGTGTACTGCGC 60.598 55.000 0.00 0.00 0.00 6.09
3108 3327 0.318699 TGTGACTGTGTACTGCGCTC 60.319 55.000 9.73 0.00 0.00 5.03
3222 3441 6.654161 ACAGAGACATTTCTTGAATTCCTGAG 59.346 38.462 2.27 0.00 29.47 3.35
3274 3493 4.849813 TGACCTTCATGAGTGGATCAAT 57.150 40.909 19.57 1.43 42.53 2.57
3464 3683 4.873817 TGAAGCATCACAGGTTTGAATTG 58.126 39.130 0.00 0.00 0.00 2.32
3668 3887 7.713073 CCAGTTAGAATAGATTGTTCCTCCTTC 59.287 40.741 0.00 0.00 0.00 3.46
3795 4014 6.666546 ACATGTCTTTTGATTCATCAAGGGAT 59.333 34.615 0.00 0.00 46.34 3.85
3937 4156 2.140717 GGTTGGGTAGACTTGTCAACG 58.859 52.381 3.49 0.00 38.71 4.10
4089 4353 5.962433 TGAAAAACTACATACTCTCTCCGG 58.038 41.667 0.00 0.00 0.00 5.14
4106 4370 2.094078 TCCGGTCCGAATTAAATGACGT 60.094 45.455 14.39 0.00 0.00 4.34
4159 4423 4.794169 ACACAGGTTGCGTCAATTAATTC 58.206 39.130 0.00 0.00 0.00 2.17
4220 4484 3.755905 TGAAGCAGTTGTTTCAAGTCACA 59.244 39.130 8.65 0.00 41.23 3.58
4414 4689 8.251721 TCTACAAAGCAAGATCTAGAAAGTACC 58.748 37.037 0.00 0.00 0.00 3.34
4844 5125 3.003173 CGGTGCTCAGGGGAGGAA 61.003 66.667 0.00 0.00 43.57 3.36
4976 5257 2.161609 CCACATTTTACCGAGCCTGAAC 59.838 50.000 0.00 0.00 0.00 3.18
5065 5355 2.373169 AGAGCTGACCTTGGATGAAACA 59.627 45.455 0.00 0.00 0.00 2.83
5169 5459 5.455326 GCCTCCTGATAACAATATCCTGTGT 60.455 44.000 0.00 0.00 37.68 3.72
5194 5484 9.920133 GTTGATACTGCTATGATCTCTTAATGA 57.080 33.333 0.00 0.00 0.00 2.57
5230 5520 8.732746 TTAAGTCAAATCTTGCTTATACTCCC 57.267 34.615 0.00 0.00 33.00 4.30
5231 5521 6.567602 AGTCAAATCTTGCTTATACTCCCT 57.432 37.500 0.00 0.00 0.00 4.20
5232 5522 6.963322 AGTCAAATCTTGCTTATACTCCCTT 58.037 36.000 0.00 0.00 0.00 3.95
5233 5523 7.051000 AGTCAAATCTTGCTTATACTCCCTTC 58.949 38.462 0.00 0.00 0.00 3.46
5234 5524 6.018669 GTCAAATCTTGCTTATACTCCCTTCG 60.019 42.308 0.00 0.00 0.00 3.79
5235 5525 5.615925 AATCTTGCTTATACTCCCTTCGT 57.384 39.130 0.00 0.00 0.00 3.85
5236 5526 5.615925 ATCTTGCTTATACTCCCTTCGTT 57.384 39.130 0.00 0.00 0.00 3.85
5237 5527 5.007385 TCTTGCTTATACTCCCTTCGTTC 57.993 43.478 0.00 0.00 0.00 3.95
5238 5528 3.431922 TGCTTATACTCCCTTCGTTCG 57.568 47.619 0.00 0.00 0.00 3.95
5239 5529 2.100252 TGCTTATACTCCCTTCGTTCGG 59.900 50.000 0.00 0.00 0.00 4.30
5240 5530 2.360165 GCTTATACTCCCTTCGTTCGGA 59.640 50.000 0.00 0.00 0.00 4.55
5241 5531 3.181483 GCTTATACTCCCTTCGTTCGGAA 60.181 47.826 0.00 0.00 0.00 4.30
5242 5532 4.501058 GCTTATACTCCCTTCGTTCGGAAT 60.501 45.833 0.00 0.00 33.26 3.01
5243 5533 5.598769 CTTATACTCCCTTCGTTCGGAATT 58.401 41.667 0.00 0.00 33.26 2.17
5244 5534 6.713762 TTATACTCCCTTCGTTCGGAATTA 57.286 37.500 0.00 0.00 33.26 1.40
5245 5535 3.242549 ACTCCCTTCGTTCGGAATTAC 57.757 47.619 0.00 0.00 33.26 1.89
5246 5536 2.830321 ACTCCCTTCGTTCGGAATTACT 59.170 45.455 0.00 0.00 33.26 2.24
5247 5537 3.260128 ACTCCCTTCGTTCGGAATTACTT 59.740 43.478 0.00 0.00 33.26 2.24
5248 5538 3.592059 TCCCTTCGTTCGGAATTACTTG 58.408 45.455 0.00 0.00 33.26 3.16
5249 5539 3.007182 TCCCTTCGTTCGGAATTACTTGT 59.993 43.478 0.00 0.00 33.26 3.16
5250 5540 3.370061 CCCTTCGTTCGGAATTACTTGTC 59.630 47.826 0.00 0.00 33.26 3.18
5251 5541 4.243270 CCTTCGTTCGGAATTACTTGTCT 58.757 43.478 0.00 0.00 33.26 3.41
5252 5542 4.326548 CCTTCGTTCGGAATTACTTGTCTC 59.673 45.833 0.00 0.00 33.26 3.36
5253 5543 3.495193 TCGTTCGGAATTACTTGTCTCG 58.505 45.455 0.00 0.00 0.00 4.04
5254 5544 3.189080 TCGTTCGGAATTACTTGTCTCGA 59.811 43.478 0.00 0.00 0.00 4.04
5255 5545 3.916172 CGTTCGGAATTACTTGTCTCGAA 59.084 43.478 0.00 0.00 33.66 3.71
5256 5546 4.383649 CGTTCGGAATTACTTGTCTCGAAA 59.616 41.667 0.00 0.00 37.00 3.46
5257 5547 5.107760 CGTTCGGAATTACTTGTCTCGAAAA 60.108 40.000 0.00 0.00 37.00 2.29
5258 5548 6.400727 CGTTCGGAATTACTTGTCTCGAAAAT 60.401 38.462 0.00 0.00 37.00 1.82
5259 5549 6.403333 TCGGAATTACTTGTCTCGAAAATG 57.597 37.500 0.00 0.00 0.00 2.32
5260 5550 5.350365 TCGGAATTACTTGTCTCGAAAATGG 59.650 40.000 0.00 0.00 0.00 3.16
5261 5551 5.350365 CGGAATTACTTGTCTCGAAAATGGA 59.650 40.000 0.00 0.00 0.00 3.41
5262 5552 6.037172 CGGAATTACTTGTCTCGAAAATGGAT 59.963 38.462 0.00 0.00 0.00 3.41
5263 5553 7.189512 GGAATTACTTGTCTCGAAAATGGATG 58.810 38.462 0.00 0.00 0.00 3.51
5264 5554 7.148239 GGAATTACTTGTCTCGAAAATGGATGT 60.148 37.037 0.00 0.00 0.00 3.06
5265 5555 8.786826 AATTACTTGTCTCGAAAATGGATGTA 57.213 30.769 0.00 0.00 0.00 2.29
5266 5556 8.964476 ATTACTTGTCTCGAAAATGGATGTAT 57.036 30.769 0.00 0.00 0.00 2.29
5267 5557 6.910536 ACTTGTCTCGAAAATGGATGTATC 57.089 37.500 0.00 0.00 0.00 2.24
5268 5558 6.644347 ACTTGTCTCGAAAATGGATGTATCT 58.356 36.000 0.00 0.00 0.00 1.98
5269 5559 7.782049 ACTTGTCTCGAAAATGGATGTATCTA 58.218 34.615 0.00 0.00 0.00 1.98
5270 5560 7.923344 ACTTGTCTCGAAAATGGATGTATCTAG 59.077 37.037 0.00 0.00 0.00 2.43
5271 5561 7.582667 TGTCTCGAAAATGGATGTATCTAGA 57.417 36.000 0.00 0.00 0.00 2.43
5272 5562 8.007405 TGTCTCGAAAATGGATGTATCTAGAA 57.993 34.615 0.00 0.00 0.00 2.10
5273 5563 7.921214 TGTCTCGAAAATGGATGTATCTAGAAC 59.079 37.037 0.00 0.00 0.00 3.01
5274 5564 8.138712 GTCTCGAAAATGGATGTATCTAGAACT 58.861 37.037 0.00 0.00 0.00 3.01
5275 5565 9.350951 TCTCGAAAATGGATGTATCTAGAACTA 57.649 33.333 0.00 0.00 0.00 2.24
5276 5566 9.967346 CTCGAAAATGGATGTATCTAGAACTAA 57.033 33.333 0.00 0.00 0.00 2.24
5304 5594 6.604012 ACGTCTAGATACATCTATTTCTGCG 58.396 40.000 0.00 0.00 38.60 5.18
5305 5595 6.427242 ACGTCTAGATACATCTATTTCTGCGA 59.573 38.462 0.00 0.00 38.60 5.10
5306 5596 6.739100 CGTCTAGATACATCTATTTCTGCGAC 59.261 42.308 0.00 2.21 38.60 5.19
5307 5597 7.571428 CGTCTAGATACATCTATTTCTGCGACA 60.571 40.741 0.00 0.00 38.60 4.35
5308 5598 8.076781 GTCTAGATACATCTATTTCTGCGACAA 58.923 37.037 0.00 0.00 38.60 3.18
5309 5599 8.293157 TCTAGATACATCTATTTCTGCGACAAG 58.707 37.037 0.00 0.00 38.60 3.16
5310 5600 6.810911 AGATACATCTATTTCTGCGACAAGT 58.189 36.000 0.00 0.00 34.85 3.16
5311 5601 7.941919 AGATACATCTATTTCTGCGACAAGTA 58.058 34.615 0.00 0.00 34.85 2.24
5312 5602 8.414003 AGATACATCTATTTCTGCGACAAGTAA 58.586 33.333 0.00 0.00 34.85 2.24
5313 5603 9.197694 GATACATCTATTTCTGCGACAAGTAAT 57.802 33.333 0.00 0.00 0.00 1.89
5314 5604 7.849804 ACATCTATTTCTGCGACAAGTAATT 57.150 32.000 0.00 0.00 0.00 1.40
5315 5605 7.910304 ACATCTATTTCTGCGACAAGTAATTC 58.090 34.615 0.00 0.00 0.00 2.17
5316 5606 6.903883 TCTATTTCTGCGACAAGTAATTCC 57.096 37.500 0.00 0.00 0.00 3.01
5317 5607 4.600012 ATTTCTGCGACAAGTAATTCCG 57.400 40.909 0.00 0.00 0.00 4.30
5318 5608 3.306917 TTCTGCGACAAGTAATTCCGA 57.693 42.857 0.00 0.00 0.00 4.55
5319 5609 3.306917 TCTGCGACAAGTAATTCCGAA 57.693 42.857 0.00 0.00 0.00 4.30
5320 5610 2.991190 TCTGCGACAAGTAATTCCGAAC 59.009 45.455 0.00 0.00 0.00 3.95
5321 5611 1.722464 TGCGACAAGTAATTCCGAACG 59.278 47.619 0.00 0.00 0.00 3.95
5322 5612 1.060122 GCGACAAGTAATTCCGAACGG 59.940 52.381 6.94 6.94 0.00 4.44
5323 5613 2.598589 CGACAAGTAATTCCGAACGGA 58.401 47.619 12.04 12.04 43.52 4.69
5324 5614 2.597305 CGACAAGTAATTCCGAACGGAG 59.403 50.000 15.34 5.60 46.06 4.63
5325 5615 2.928116 GACAAGTAATTCCGAACGGAGG 59.072 50.000 15.34 4.52 46.06 4.30
5326 5616 2.277084 CAAGTAATTCCGAACGGAGGG 58.723 52.381 15.34 0.00 46.06 4.30
5327 5617 1.856629 AGTAATTCCGAACGGAGGGA 58.143 50.000 15.34 2.49 46.06 4.20
5328 5618 1.755380 AGTAATTCCGAACGGAGGGAG 59.245 52.381 15.34 0.00 46.06 4.30
5329 5619 1.479730 GTAATTCCGAACGGAGGGAGT 59.520 52.381 15.34 4.12 46.06 3.85
5330 5620 1.856629 AATTCCGAACGGAGGGAGTA 58.143 50.000 15.34 1.05 46.06 2.59
5412 5712 1.227556 GAGCACCTGTGGTTGACGT 60.228 57.895 3.22 0.00 41.93 4.34
5420 5720 2.289444 CCTGTGGTTGACGTGGTTCTAT 60.289 50.000 0.00 0.00 0.00 1.98
5442 5742 3.315142 CTGCGAGCTAGTGCCCCAA 62.315 63.158 0.00 0.00 40.80 4.12
5443 5743 2.820037 GCGAGCTAGTGCCCCAAC 60.820 66.667 0.00 0.00 40.80 3.77
5493 5837 0.408700 ACGAGGAGTGGGAGTAGGTT 59.591 55.000 0.00 0.00 0.00 3.50
5513 5857 6.630071 AGGTTATTGAATTTCAAACCCATCG 58.370 36.000 21.43 0.00 40.12 3.84
5518 5862 6.392625 TTGAATTTCAAACCCATCGTAACA 57.607 33.333 9.36 0.00 32.71 2.41
5524 5868 4.755411 TCAAACCCATCGTAACAGAGATC 58.245 43.478 0.00 0.00 0.00 2.75
5528 5872 2.030717 CCCATCGTAACAGAGATCGGAG 60.031 54.545 0.00 0.00 28.34 4.63
5544 5888 1.581447 GAGAACAAAAGCGGCAGGG 59.419 57.895 1.45 0.00 0.00 4.45
5546 5890 1.901464 GAACAAAAGCGGCAGGGGA 60.901 57.895 1.45 0.00 0.00 4.81
5547 5891 1.866853 GAACAAAAGCGGCAGGGGAG 61.867 60.000 1.45 0.00 0.00 4.30
5549 5893 4.366684 AAAAGCGGCAGGGGAGGG 62.367 66.667 1.45 0.00 0.00 4.30
5560 5904 0.047802 AGGGGAGGGATTGGATTGGA 59.952 55.000 0.00 0.00 0.00 3.53
5575 5919 2.609427 TTGGATGAGAAGAGATGGCG 57.391 50.000 0.00 0.00 0.00 5.69
5580 5924 3.077556 AGAAGAGATGGCGGCCGT 61.078 61.111 28.70 14.88 0.00 5.68
5613 5957 3.615056 GGTTTTTGTGTGCTGGTTTGTAC 59.385 43.478 0.00 0.00 0.00 2.90
5614 5958 4.238514 GTTTTTGTGTGCTGGTTTGTACA 58.761 39.130 0.00 0.00 0.00 2.90
5615 5959 4.521130 TTTTGTGTGCTGGTTTGTACAA 57.479 36.364 3.59 3.59 34.59 2.41
5616 5960 4.521130 TTTGTGTGCTGGTTTGTACAAA 57.479 36.364 17.01 17.01 36.16 2.83
5617 5961 4.727507 TTGTGTGCTGGTTTGTACAAAT 57.272 36.364 23.11 0.00 34.59 2.32
5618 5962 5.836821 TTGTGTGCTGGTTTGTACAAATA 57.163 34.783 23.11 14.45 34.59 1.40
5619 5963 5.836821 TGTGTGCTGGTTTGTACAAATAA 57.163 34.783 23.11 13.60 34.59 1.40
5620 5964 6.208988 TGTGTGCTGGTTTGTACAAATAAA 57.791 33.333 23.11 11.34 34.59 1.40
5621 5965 6.631016 TGTGTGCTGGTTTGTACAAATAAAA 58.369 32.000 23.11 9.12 34.59 1.52
5622 5966 6.754209 TGTGTGCTGGTTTGTACAAATAAAAG 59.246 34.615 23.11 17.46 34.59 2.27
5623 5967 6.754675 GTGTGCTGGTTTGTACAAATAAAAGT 59.245 34.615 23.11 0.00 34.59 2.66
5624 5968 6.754209 TGTGCTGGTTTGTACAAATAAAAGTG 59.246 34.615 23.11 10.84 32.36 3.16
5625 5969 6.754675 GTGCTGGTTTGTACAAATAAAAGTGT 59.245 34.615 23.11 0.00 32.36 3.55
5626 5970 7.276878 GTGCTGGTTTGTACAAATAAAAGTGTT 59.723 33.333 23.11 0.00 32.36 3.32
5627 5971 7.276658 TGCTGGTTTGTACAAATAAAAGTGTTG 59.723 33.333 23.11 7.00 32.36 3.33
5628 5972 7.276878 GCTGGTTTGTACAAATAAAAGTGTTGT 59.723 33.333 23.11 0.00 38.88 3.32
5629 5973 8.467402 TGGTTTGTACAAATAAAAGTGTTGTG 57.533 30.769 23.11 0.00 36.23 3.33
5630 5974 8.088981 TGGTTTGTACAAATAAAAGTGTTGTGT 58.911 29.630 23.11 0.00 36.23 3.72
5631 5975 8.927721 GGTTTGTACAAATAAAAGTGTTGTGTT 58.072 29.630 23.11 0.00 36.23 3.32
5634 5978 9.915629 TTGTACAAATAAAAGTGTTGTGTTTCT 57.084 25.926 5.64 0.00 36.23 2.52
5635 5979 9.915629 TGTACAAATAAAAGTGTTGTGTTTCTT 57.084 25.926 0.00 0.00 36.23 2.52
5663 6007 3.028094 TCGGAGGGAGTAGCTTATTGT 57.972 47.619 0.00 0.00 0.00 2.71
5669 6013 2.632377 GGAGTAGCTTATTGTGCTGCA 58.368 47.619 0.00 0.00 43.81 4.41
5690 6039 5.298197 CATGCTATGCAAGGATCTCAATC 57.702 43.478 0.00 0.00 43.62 2.67
5736 6085 7.212976 ACACTATATGTCTGAAAATGCTCGAT 58.787 34.615 0.00 0.00 36.54 3.59
5737 6086 7.170489 ACACTATATGTCTGAAAATGCTCGATG 59.830 37.037 0.00 0.00 36.54 3.84
5778 6127 4.040339 TGGAGTCTGAAAGTGTTCTATGCA 59.960 41.667 0.00 0.00 34.60 3.96
5786 6135 1.747355 AGTGTTCTATGCAATGCTGGC 59.253 47.619 6.82 0.00 0.00 4.85
5793 6142 4.209538 TCTATGCAATGCTGGCTATGTTT 58.790 39.130 6.82 0.00 0.00 2.83
5797 6146 3.184541 GCAATGCTGGCTATGTTTGAAG 58.815 45.455 0.00 0.00 0.00 3.02
5798 6147 3.777478 CAATGCTGGCTATGTTTGAAGG 58.223 45.455 0.00 0.00 0.00 3.46
5799 6148 1.838112 TGCTGGCTATGTTTGAAGGG 58.162 50.000 0.00 0.00 0.00 3.95
5800 6149 1.354031 TGCTGGCTATGTTTGAAGGGA 59.646 47.619 0.00 0.00 0.00 4.20
5801 6150 2.019984 GCTGGCTATGTTTGAAGGGAG 58.980 52.381 0.00 0.00 0.00 4.30
5802 6151 2.619074 GCTGGCTATGTTTGAAGGGAGT 60.619 50.000 0.00 0.00 0.00 3.85
5803 6152 3.012518 CTGGCTATGTTTGAAGGGAGTG 58.987 50.000 0.00 0.00 0.00 3.51
5804 6153 2.375174 TGGCTATGTTTGAAGGGAGTGT 59.625 45.455 0.00 0.00 0.00 3.55
5805 6154 3.010420 GGCTATGTTTGAAGGGAGTGTC 58.990 50.000 0.00 0.00 0.00 3.67
5806 6155 3.307762 GGCTATGTTTGAAGGGAGTGTCT 60.308 47.826 0.00 0.00 0.00 3.41
5807 6156 4.081087 GGCTATGTTTGAAGGGAGTGTCTA 60.081 45.833 0.00 0.00 0.00 2.59
5808 6157 5.396884 GGCTATGTTTGAAGGGAGTGTCTAT 60.397 44.000 0.00 0.00 0.00 1.98
5809 6158 5.755861 GCTATGTTTGAAGGGAGTGTCTATC 59.244 44.000 0.00 0.00 0.00 2.08
5810 6159 6.407525 GCTATGTTTGAAGGGAGTGTCTATCT 60.408 42.308 0.00 0.00 0.00 1.98
5811 6160 5.407407 TGTTTGAAGGGAGTGTCTATCTC 57.593 43.478 0.00 0.00 0.00 2.75
5812 6161 4.082190 TGTTTGAAGGGAGTGTCTATCTCG 60.082 45.833 0.00 0.00 33.26 4.04
5813 6162 2.025155 TGAAGGGAGTGTCTATCTCGC 58.975 52.381 0.00 0.00 42.54 5.03
5814 6163 1.002251 GAAGGGAGTGTCTATCTCGCG 60.002 57.143 0.00 0.00 45.33 5.87
5815 6164 1.008309 GGGAGTGTCTATCTCGCGC 60.008 63.158 0.00 0.00 35.76 6.86
5816 6165 1.369448 GGAGTGTCTATCTCGCGCG 60.369 63.158 26.76 26.76 33.26 6.86
5817 6166 2.006587 GAGTGTCTATCTCGCGCGC 61.007 63.158 27.95 23.91 0.00 6.86
5818 6167 3.379625 GTGTCTATCTCGCGCGCG 61.380 66.667 44.84 44.84 41.35 6.86
5836 6185 4.000557 CGTGTTGCAGCGCTCGTT 62.001 61.111 7.13 0.00 0.00 3.85
5837 6186 2.327940 GTGTTGCAGCGCTCGTTT 59.672 55.556 7.13 0.00 0.00 3.60
5838 6187 1.298339 GTGTTGCAGCGCTCGTTTT 60.298 52.632 7.13 0.00 0.00 2.43
5839 6188 1.010125 TGTTGCAGCGCTCGTTTTC 60.010 52.632 7.13 0.00 0.00 2.29
5840 6189 2.069277 GTTGCAGCGCTCGTTTTCG 61.069 57.895 7.13 0.00 45.64 3.46
5841 6190 3.235292 TTGCAGCGCTCGTTTTCGG 62.235 57.895 7.13 0.00 44.25 4.30
5842 6191 3.411351 GCAGCGCTCGTTTTCGGA 61.411 61.111 7.13 0.00 44.25 4.55
5843 6192 2.470286 CAGCGCTCGTTTTCGGAC 59.530 61.111 7.13 0.00 44.25 4.79
5844 6193 2.028484 AGCGCTCGTTTTCGGACA 59.972 55.556 2.64 0.00 44.25 4.02
5845 6194 2.022129 AGCGCTCGTTTTCGGACAG 61.022 57.895 2.64 0.00 44.25 3.51
5846 6195 3.011760 GCGCTCGTTTTCGGACAGG 62.012 63.158 0.00 0.00 44.25 4.00
5847 6196 2.861006 GCTCGTTTTCGGACAGGC 59.139 61.111 0.00 0.00 44.25 4.85
5848 6197 2.677979 GCTCGTTTTCGGACAGGCC 61.678 63.158 0.00 0.00 44.25 5.19
5849 6198 1.004918 CTCGTTTTCGGACAGGCCT 60.005 57.895 0.00 0.00 44.25 5.19
5850 6199 0.245539 CTCGTTTTCGGACAGGCCTA 59.754 55.000 3.98 0.00 44.25 3.93
5851 6200 0.680618 TCGTTTTCGGACAGGCCTAA 59.319 50.000 3.98 0.00 44.25 2.69
5852 6201 1.276989 TCGTTTTCGGACAGGCCTAAT 59.723 47.619 3.98 0.00 44.25 1.73
5853 6202 2.081462 CGTTTTCGGACAGGCCTAATT 58.919 47.619 3.98 0.00 39.94 1.40
5854 6203 2.486592 CGTTTTCGGACAGGCCTAATTT 59.513 45.455 3.98 0.00 39.94 1.82
5855 6204 3.669557 CGTTTTCGGACAGGCCTAATTTG 60.670 47.826 3.98 0.00 39.94 2.32
5856 6205 2.122783 TTCGGACAGGCCTAATTTGG 57.877 50.000 3.98 1.04 0.00 3.28
5857 6206 1.281419 TCGGACAGGCCTAATTTGGA 58.719 50.000 3.98 0.00 0.00 3.53
5858 6207 1.631388 TCGGACAGGCCTAATTTGGAA 59.369 47.619 3.98 0.00 0.00 3.53
5859 6208 2.040545 TCGGACAGGCCTAATTTGGAAA 59.959 45.455 3.98 0.00 0.00 3.13
5860 6209 2.423538 CGGACAGGCCTAATTTGGAAAG 59.576 50.000 3.98 0.78 0.00 2.62
5861 6210 3.431415 GGACAGGCCTAATTTGGAAAGT 58.569 45.455 3.98 3.95 0.00 2.66
5862 6211 3.193479 GGACAGGCCTAATTTGGAAAGTG 59.807 47.826 3.98 3.42 0.00 3.16
5863 6212 4.079253 GACAGGCCTAATTTGGAAAGTGA 58.921 43.478 3.98 0.00 0.00 3.41
5864 6213 3.826729 ACAGGCCTAATTTGGAAAGTGAC 59.173 43.478 3.98 0.00 0.00 3.67
5865 6214 4.082125 CAGGCCTAATTTGGAAAGTGACT 58.918 43.478 3.98 0.00 0.00 3.41
5866 6215 4.524328 CAGGCCTAATTTGGAAAGTGACTT 59.476 41.667 3.98 0.00 0.00 3.01
5867 6216 5.710099 CAGGCCTAATTTGGAAAGTGACTTA 59.290 40.000 3.98 0.00 0.00 2.24
5868 6217 5.946377 AGGCCTAATTTGGAAAGTGACTTAG 59.054 40.000 1.29 0.00 0.00 2.18
5869 6218 5.710567 GGCCTAATTTGGAAAGTGACTTAGT 59.289 40.000 10.34 0.00 0.00 2.24
5870 6219 6.208797 GGCCTAATTTGGAAAGTGACTTAGTT 59.791 38.462 10.34 0.00 0.00 2.24
5871 6220 7.392393 GGCCTAATTTGGAAAGTGACTTAGTTA 59.608 37.037 10.34 0.00 0.00 2.24
5872 6221 8.235226 GCCTAATTTGGAAAGTGACTTAGTTAC 58.765 37.037 10.34 0.00 0.00 2.50
5873 6222 9.280174 CCTAATTTGGAAAGTGACTTAGTTACA 57.720 33.333 9.87 0.00 0.00 2.41
5876 6225 7.504924 TTTGGAAAGTGACTTAGTTACATGG 57.495 36.000 9.87 0.00 0.00 3.66
5877 6226 6.428083 TGGAAAGTGACTTAGTTACATGGA 57.572 37.500 9.87 0.00 0.00 3.41
5878 6227 7.016153 TGGAAAGTGACTTAGTTACATGGAT 57.984 36.000 9.87 0.00 0.00 3.41
5879 6228 7.458397 TGGAAAGTGACTTAGTTACATGGATT 58.542 34.615 9.87 0.00 0.00 3.01
5880 6229 8.598916 TGGAAAGTGACTTAGTTACATGGATTA 58.401 33.333 9.87 0.00 0.00 1.75
5881 6230 9.444600 GGAAAGTGACTTAGTTACATGGATTAA 57.555 33.333 9.87 0.00 0.00 1.40
5888 6237 9.503399 GACTTAGTTACATGGATTAATTAGGGG 57.497 37.037 0.00 0.00 0.00 4.79
5889 6238 9.010767 ACTTAGTTACATGGATTAATTAGGGGT 57.989 33.333 0.00 0.00 0.00 4.95
5890 6239 9.284968 CTTAGTTACATGGATTAATTAGGGGTG 57.715 37.037 0.00 0.00 0.00 4.61
5891 6240 6.610830 AGTTACATGGATTAATTAGGGGTGG 58.389 40.000 0.00 0.00 0.00 4.61
5892 6241 6.391649 AGTTACATGGATTAATTAGGGGTGGA 59.608 38.462 0.00 0.00 0.00 4.02
5893 6242 5.948481 ACATGGATTAATTAGGGGTGGAT 57.052 39.130 0.00 0.00 0.00 3.41
5894 6243 6.293649 ACATGGATTAATTAGGGGTGGATT 57.706 37.500 0.00 0.00 0.00 3.01
5895 6244 7.415004 ACATGGATTAATTAGGGGTGGATTA 57.585 36.000 0.00 0.00 0.00 1.75
5896 6245 7.831955 ACATGGATTAATTAGGGGTGGATTAA 58.168 34.615 0.00 0.00 31.90 1.40
5897 6246 8.464322 ACATGGATTAATTAGGGGTGGATTAAT 58.536 33.333 0.00 0.00 38.17 1.40
5898 6247 9.325248 CATGGATTAATTAGGGGTGGATTAATT 57.675 33.333 0.00 0.00 36.56 1.40
5901 6250 8.967918 GGATTAATTAGGGGTGGATTAATTAGC 58.032 37.037 0.00 0.00 36.56 3.09
5902 6251 9.528489 GATTAATTAGGGGTGGATTAATTAGCA 57.472 33.333 0.00 0.00 36.56 3.49
5903 6252 8.934023 TTAATTAGGGGTGGATTAATTAGCAG 57.066 34.615 0.00 0.00 33.34 4.24
5904 6253 3.229697 AGGGGTGGATTAATTAGCAGC 57.770 47.619 0.00 0.00 0.00 5.25
5905 6254 1.880027 GGGGTGGATTAATTAGCAGCG 59.120 52.381 0.00 0.00 0.00 5.18
5906 6255 1.880027 GGGTGGATTAATTAGCAGCGG 59.120 52.381 0.00 0.00 0.00 5.52
5907 6256 1.880027 GGTGGATTAATTAGCAGCGGG 59.120 52.381 0.00 0.00 0.00 6.13
5908 6257 1.266989 GTGGATTAATTAGCAGCGGGC 59.733 52.381 0.00 0.00 45.30 6.13
5909 6258 0.881796 GGATTAATTAGCAGCGGGCC 59.118 55.000 0.00 0.00 46.50 5.80
5910 6259 0.881796 GATTAATTAGCAGCGGGCCC 59.118 55.000 13.57 13.57 46.50 5.80
5911 6260 0.539669 ATTAATTAGCAGCGGGCCCC 60.540 55.000 18.66 9.47 46.50 5.80
5912 6261 2.634193 TTAATTAGCAGCGGGCCCCC 62.634 60.000 18.66 7.48 46.50 5.40
5918 6267 4.676951 CAGCGGGCCCCCTGAAAA 62.677 66.667 29.73 0.00 29.82 2.29
5919 6268 3.672503 AGCGGGCCCCCTGAAAAT 61.673 61.111 18.66 0.00 29.82 1.82
5920 6269 3.147595 GCGGGCCCCCTGAAAATC 61.148 66.667 18.66 0.00 29.82 2.17
5921 6270 2.358619 CGGGCCCCCTGAAAATCA 59.641 61.111 18.66 0.00 29.82 2.57
5922 6271 1.754234 CGGGCCCCCTGAAAATCAG 60.754 63.158 18.66 0.32 43.91 2.90
5930 6279 2.583472 CTGAAAATCAGGGGGTGGC 58.417 57.895 0.00 0.00 40.71 5.01
5931 6280 1.304052 TGAAAATCAGGGGGTGGCG 60.304 57.895 0.00 0.00 0.00 5.69
5932 6281 1.001393 GAAAATCAGGGGGTGGCGA 60.001 57.895 0.00 0.00 0.00 5.54
5933 6282 0.395724 GAAAATCAGGGGGTGGCGAT 60.396 55.000 0.00 0.00 0.00 4.58
5934 6283 0.041090 AAAATCAGGGGGTGGCGATT 59.959 50.000 0.00 0.00 0.00 3.34
5935 6284 0.923358 AAATCAGGGGGTGGCGATTA 59.077 50.000 0.00 0.00 0.00 1.75
5936 6285 0.474184 AATCAGGGGGTGGCGATTAG 59.526 55.000 0.00 0.00 0.00 1.73
5937 6286 0.694444 ATCAGGGGGTGGCGATTAGT 60.694 55.000 0.00 0.00 0.00 2.24
5938 6287 1.153168 CAGGGGGTGGCGATTAGTG 60.153 63.158 0.00 0.00 0.00 2.74
5939 6288 1.615424 AGGGGGTGGCGATTAGTGT 60.615 57.895 0.00 0.00 0.00 3.55
5940 6289 1.205460 AGGGGGTGGCGATTAGTGTT 61.205 55.000 0.00 0.00 0.00 3.32
5941 6290 1.029947 GGGGGTGGCGATTAGTGTTG 61.030 60.000 0.00 0.00 0.00 3.33
5942 6291 0.035820 GGGGTGGCGATTAGTGTTGA 60.036 55.000 0.00 0.00 0.00 3.18
5943 6292 1.408266 GGGGTGGCGATTAGTGTTGAT 60.408 52.381 0.00 0.00 0.00 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.827586 ACTGTCAAACCTTTTGTTGACTTA 57.172 33.333 15.31 0.00 37.23 2.24
1 2 5.722021 ACTGTCAAACCTTTTGTTGACTT 57.278 34.783 15.31 2.86 37.23 3.01
2 3 5.722021 AACTGTCAAACCTTTTGTTGACT 57.278 34.783 15.31 0.00 37.23 3.41
3 4 7.464045 GCATTAACTGTCAAACCTTTTGTTGAC 60.464 37.037 9.11 9.11 37.23 3.18
4 5 6.533367 GCATTAACTGTCAAACCTTTTGTTGA 59.467 34.615 0.00 0.00 37.23 3.18
5 6 6.507771 CGCATTAACTGTCAAACCTTTTGTTG 60.508 38.462 0.00 0.00 37.23 3.33
6 7 5.518487 CGCATTAACTGTCAAACCTTTTGTT 59.482 36.000 0.00 0.00 39.43 2.83
7 8 5.040635 CGCATTAACTGTCAAACCTTTTGT 58.959 37.500 0.00 0.00 0.00 2.83
8 9 5.277825 TCGCATTAACTGTCAAACCTTTTG 58.722 37.500 0.00 0.00 0.00 2.44
9 10 5.508200 TCGCATTAACTGTCAAACCTTTT 57.492 34.783 0.00 0.00 0.00 2.27
10 11 5.705609 ATCGCATTAACTGTCAAACCTTT 57.294 34.783 0.00 0.00 0.00 3.11
11 12 5.705609 AATCGCATTAACTGTCAAACCTT 57.294 34.783 0.00 0.00 0.00 3.50
12 13 5.705609 AAATCGCATTAACTGTCAAACCT 57.294 34.783 0.00 0.00 0.00 3.50
13 14 7.861176 TTTAAATCGCATTAACTGTCAAACC 57.139 32.000 0.00 0.00 0.00 3.27
63 64 5.105351 CCTGTCTCTCTTGGTTTTGGTTTTT 60.105 40.000 0.00 0.00 0.00 1.94
64 65 4.402474 CCTGTCTCTCTTGGTTTTGGTTTT 59.598 41.667 0.00 0.00 0.00 2.43
65 66 3.954258 CCTGTCTCTCTTGGTTTTGGTTT 59.046 43.478 0.00 0.00 0.00 3.27
66 67 3.555966 CCTGTCTCTCTTGGTTTTGGTT 58.444 45.455 0.00 0.00 0.00 3.67
67 68 2.158608 CCCTGTCTCTCTTGGTTTTGGT 60.159 50.000 0.00 0.00 0.00 3.67
68 69 2.508526 CCCTGTCTCTCTTGGTTTTGG 58.491 52.381 0.00 0.00 0.00 3.28
69 70 2.508526 CCCCTGTCTCTCTTGGTTTTG 58.491 52.381 0.00 0.00 0.00 2.44
70 71 1.425448 CCCCCTGTCTCTCTTGGTTTT 59.575 52.381 0.00 0.00 0.00 2.43
71 72 1.068121 CCCCCTGTCTCTCTTGGTTT 58.932 55.000 0.00 0.00 0.00 3.27
72 73 0.193574 TCCCCCTGTCTCTCTTGGTT 59.806 55.000 0.00 0.00 0.00 3.67
73 74 0.193574 TTCCCCCTGTCTCTCTTGGT 59.806 55.000 0.00 0.00 0.00 3.67
74 75 1.280421 CTTTCCCCCTGTCTCTCTTGG 59.720 57.143 0.00 0.00 0.00 3.61
75 76 1.981495 ACTTTCCCCCTGTCTCTCTTG 59.019 52.381 0.00 0.00 0.00 3.02
76 77 2.424684 ACTTTCCCCCTGTCTCTCTT 57.575 50.000 0.00 0.00 0.00 2.85
77 78 3.246167 ACATACTTTCCCCCTGTCTCTCT 60.246 47.826 0.00 0.00 0.00 3.10
78 79 3.108376 ACATACTTTCCCCCTGTCTCTC 58.892 50.000 0.00 0.00 0.00 3.20
79 80 3.207044 ACATACTTTCCCCCTGTCTCT 57.793 47.619 0.00 0.00 0.00 3.10
80 81 4.141688 CCTTACATACTTTCCCCCTGTCTC 60.142 50.000 0.00 0.00 0.00 3.36
81 82 3.780850 CCTTACATACTTTCCCCCTGTCT 59.219 47.826 0.00 0.00 0.00 3.41
82 83 3.522343 ACCTTACATACTTTCCCCCTGTC 59.478 47.826 0.00 0.00 0.00 3.51
83 84 3.522343 GACCTTACATACTTTCCCCCTGT 59.478 47.826 0.00 0.00 0.00 4.00
84 85 3.521937 TGACCTTACATACTTTCCCCCTG 59.478 47.826 0.00 0.00 0.00 4.45
85 86 3.810623 TGACCTTACATACTTTCCCCCT 58.189 45.455 0.00 0.00 0.00 4.79
86 87 4.524053 CTTGACCTTACATACTTTCCCCC 58.476 47.826 0.00 0.00 0.00 5.40
87 88 4.226620 TCCTTGACCTTACATACTTTCCCC 59.773 45.833 0.00 0.00 0.00 4.81
88 89 5.431179 TCCTTGACCTTACATACTTTCCC 57.569 43.478 0.00 0.00 0.00 3.97
89 90 6.650120 TCATCCTTGACCTTACATACTTTCC 58.350 40.000 0.00 0.00 0.00 3.13
90 91 7.556844 TCTCATCCTTGACCTTACATACTTTC 58.443 38.462 0.00 0.00 0.00 2.62
91 92 7.496346 TCTCATCCTTGACCTTACATACTTT 57.504 36.000 0.00 0.00 0.00 2.66
92 93 7.682787 ATCTCATCCTTGACCTTACATACTT 57.317 36.000 0.00 0.00 0.00 2.24
93 94 8.228206 TCTATCTCATCCTTGACCTTACATACT 58.772 37.037 0.00 0.00 0.00 2.12
94 95 8.301002 GTCTATCTCATCCTTGACCTTACATAC 58.699 40.741 0.00 0.00 0.00 2.39
95 96 7.451877 GGTCTATCTCATCCTTGACCTTACATA 59.548 40.741 0.00 0.00 40.34 2.29
96 97 6.268847 GGTCTATCTCATCCTTGACCTTACAT 59.731 42.308 0.00 0.00 40.34 2.29
97 98 5.598830 GGTCTATCTCATCCTTGACCTTACA 59.401 44.000 0.00 0.00 40.34 2.41
98 99 5.598830 TGGTCTATCTCATCCTTGACCTTAC 59.401 44.000 10.65 0.00 42.96 2.34
99 100 5.598830 GTGGTCTATCTCATCCTTGACCTTA 59.401 44.000 10.65 0.00 42.96 2.69
100 101 4.407296 GTGGTCTATCTCATCCTTGACCTT 59.593 45.833 10.65 0.00 42.96 3.50
101 102 3.964031 GTGGTCTATCTCATCCTTGACCT 59.036 47.826 10.65 0.00 42.96 3.85
102 103 3.706594 TGTGGTCTATCTCATCCTTGACC 59.293 47.826 0.00 0.00 42.87 4.02
103 104 5.543507 ATGTGGTCTATCTCATCCTTGAC 57.456 43.478 0.00 0.00 0.00 3.18
104 105 7.862274 AATATGTGGTCTATCTCATCCTTGA 57.138 36.000 0.00 0.00 0.00 3.02
295 296 1.374252 AACCGCAACCGAGCAGTAG 60.374 57.895 0.00 0.00 36.29 2.57
296 297 1.666553 CAACCGCAACCGAGCAGTA 60.667 57.895 0.00 0.00 36.29 2.74
297 298 2.972505 CAACCGCAACCGAGCAGT 60.973 61.111 0.00 0.00 36.29 4.40
298 299 4.389576 GCAACCGCAACCGAGCAG 62.390 66.667 0.00 0.00 38.36 4.24
323 324 7.222872 TGTTGGTTTTGGAATGATTAAGCAAT 58.777 30.769 0.00 0.00 38.14 3.56
373 374 6.389091 TGGCTGCAACTTGTTTAAGATAATG 58.611 36.000 0.50 0.00 37.36 1.90
430 431 8.294954 CGAAGGGAGTATTATATGATGGTACT 57.705 38.462 0.00 0.00 0.00 2.73
453 454 0.680618 TGCGGAGTAAAAAGGACCGA 59.319 50.000 0.00 0.00 45.31 4.69
455 456 6.285990 TCTTATATGCGGAGTAAAAAGGACC 58.714 40.000 0.00 0.00 0.00 4.46
457 458 8.974060 AAATCTTATATGCGGAGTAAAAAGGA 57.026 30.769 0.00 0.00 0.00 3.36
583 584 9.996554 AAATCAATACCATTAGATACGTCATGA 57.003 29.630 0.00 0.00 0.00 3.07
656 685 3.245550 ACTTTTAGTACTCCCTCGGTCCT 60.246 47.826 0.00 0.00 0.00 3.85
658 687 6.462552 AATACTTTTAGTACTCCCTCGGTC 57.537 41.667 0.00 0.00 32.84 4.79
659 688 9.646522 TTATAATACTTTTAGTACTCCCTCGGT 57.353 33.333 0.00 0.00 32.84 4.69
814 866 0.716108 GTTGCTTCCGATCACGAGTG 59.284 55.000 0.00 0.00 42.66 3.51
818 870 0.716108 GTGAGTTGCTTCCGATCACG 59.284 55.000 0.00 0.00 39.43 4.35
848 900 0.589708 GGAACGAAACGAAAGGGTGG 59.410 55.000 0.00 0.00 0.00 4.61
849 901 0.589708 GGGAACGAAACGAAAGGGTG 59.410 55.000 0.00 0.00 0.00 4.61
852 904 1.571215 CGGGGGAACGAAACGAAAGG 61.571 60.000 0.00 0.00 35.47 3.11
853 905 1.571215 CCGGGGGAACGAAACGAAAG 61.571 60.000 0.00 0.00 35.47 2.62
855 907 2.030862 CCGGGGGAACGAAACGAA 59.969 61.111 0.00 0.00 35.47 3.85
856 908 2.322638 AAACCGGGGGAACGAAACGA 62.323 55.000 6.32 0.00 35.47 3.85
857 909 1.844771 GAAACCGGGGGAACGAAACG 61.845 60.000 6.32 0.00 35.47 3.60
858 910 1.844771 CGAAACCGGGGGAACGAAAC 61.845 60.000 6.32 0.00 35.47 2.78
859 911 1.597578 CGAAACCGGGGGAACGAAA 60.598 57.895 6.32 0.00 35.47 3.46
860 912 2.030862 CGAAACCGGGGGAACGAA 59.969 61.111 6.32 0.00 35.47 3.85
861 913 4.685467 GCGAAACCGGGGGAACGA 62.685 66.667 6.32 0.00 35.47 3.85
862 914 4.992511 TGCGAAACCGGGGGAACG 62.993 66.667 6.32 5.40 0.00 3.95
863 915 3.053896 CTGCGAAACCGGGGGAAC 61.054 66.667 6.32 0.00 0.00 3.62
867 919 2.747507 CTTTTGCTGCGAAACCGGGG 62.748 60.000 10.93 0.00 0.00 5.73
899 951 4.692475 AGCCGGGGGAACGAAACG 62.692 66.667 2.18 0.00 35.47 3.60
914 966 2.047179 GGTTGGGTCTGGTCGAGC 60.047 66.667 7.89 7.89 39.41 5.03
952 1023 2.452491 ACTGGGGAGGGTTTGGCT 60.452 61.111 0.00 0.00 0.00 4.75
953 1024 2.035783 GACTGGGGAGGGTTTGGC 59.964 66.667 0.00 0.00 0.00 4.52
1726 1801 1.613630 GGTGAGGAGGAAGGAGGCA 60.614 63.158 0.00 0.00 0.00 4.75
2113 2188 4.549516 GCGTAGACCCGCGTCCTC 62.550 72.222 4.92 0.00 44.69 3.71
2236 2311 1.975363 GCAGCACCAGCAGATCGAAC 61.975 60.000 0.00 0.00 45.49 3.95
2432 2507 3.067180 ACAAGCACACATGAGGACAAAAG 59.933 43.478 0.00 0.00 0.00 2.27
2468 2552 6.638610 TGGTAAATTCGAATTCCATTTGCAT 58.361 32.000 22.93 7.41 0.00 3.96
2504 2588 2.026262 TCTGCCCCCTCAATTAGACAAC 60.026 50.000 0.00 0.00 0.00 3.32
2564 2780 7.699391 CAGTACAAAATCTACCTCATGCAAATG 59.301 37.037 0.00 0.00 0.00 2.32
2565 2781 7.394359 ACAGTACAAAATCTACCTCATGCAAAT 59.606 33.333 0.00 0.00 0.00 2.32
2568 2784 5.804639 ACAGTACAAAATCTACCTCATGCA 58.195 37.500 0.00 0.00 0.00 3.96
2569 2785 6.149474 ACAACAGTACAAAATCTACCTCATGC 59.851 38.462 0.00 0.00 0.00 4.06
2570 2786 7.173218 ACACAACAGTACAAAATCTACCTCATG 59.827 37.037 0.00 0.00 0.00 3.07
2571 2787 7.173218 CACACAACAGTACAAAATCTACCTCAT 59.827 37.037 0.00 0.00 0.00 2.90
2572 2788 6.481976 CACACAACAGTACAAAATCTACCTCA 59.518 38.462 0.00 0.00 0.00 3.86
2573 2789 6.482308 ACACACAACAGTACAAAATCTACCTC 59.518 38.462 0.00 0.00 0.00 3.85
2579 2795 8.676454 TTACAAACACACAACAGTACAAAATC 57.324 30.769 0.00 0.00 0.00 2.17
2593 2809 6.533367 TGCTTGAAAGGATTTTACAAACACAC 59.467 34.615 0.00 0.00 39.27 3.82
2634 2850 6.992063 AACGCATTTGATTGAGATTCTAGT 57.008 33.333 0.00 0.00 0.00 2.57
2635 2851 7.909267 TGTAACGCATTTGATTGAGATTCTAG 58.091 34.615 0.00 0.00 0.00 2.43
2637 2853 6.741992 TGTAACGCATTTGATTGAGATTCT 57.258 33.333 0.00 0.00 0.00 2.40
2651 2867 5.837437 TGGTTGAAGAAAATTGTAACGCAT 58.163 33.333 0.00 0.00 0.00 4.73
2666 2882 6.644347 ACTATACAATGAGACCTGGTTGAAG 58.356 40.000 0.00 0.00 0.00 3.02
2677 2893 9.538508 CAGATGTGAATCAACTATACAATGAGA 57.461 33.333 0.00 0.00 0.00 3.27
2691 2907 5.302568 AGTTGGAAAAAGCAGATGTGAATCA 59.697 36.000 0.00 0.00 0.00 2.57
2697 2913 4.160252 ACAACAGTTGGAAAAAGCAGATGT 59.840 37.500 17.76 0.00 34.12 3.06
2708 2924 2.238646 ACCTCACTCACAACAGTTGGAA 59.761 45.455 17.76 4.16 34.12 3.53
3048 3267 5.128663 TCACCGATTTCATCAGAGAATGGTA 59.871 40.000 0.00 0.00 31.11 3.25
3068 3287 6.650807 TCACAGTTAGTCATCAAATTCTCACC 59.349 38.462 0.00 0.00 0.00 4.02
3106 3325 7.255035 CCAATCTAATACAATCAACAGGCAGAG 60.255 40.741 0.00 0.00 0.00 3.35
3108 3327 6.732154 CCAATCTAATACAATCAACAGGCAG 58.268 40.000 0.00 0.00 0.00 4.85
3222 3441 2.092429 TCAATCCCAGGTACATTGGCTC 60.092 50.000 9.54 0.00 34.26 4.70
3464 3683 7.145932 AGTATCAAAACAGAGTATTGCCAAC 57.854 36.000 0.00 0.00 0.00 3.77
3668 3887 4.101119 ACAAATAGGTTATCTCTGGTCCCG 59.899 45.833 0.00 0.00 0.00 5.14
3741 3960 2.499693 TCTGGACAACTGTTCTCACACA 59.500 45.455 0.00 0.00 0.00 3.72
3752 3971 1.486310 TGTGACTTGCTCTGGACAACT 59.514 47.619 0.00 0.00 0.00 3.16
3937 4156 7.938563 AACTGATATTCGAGATAGAAACTGC 57.061 36.000 0.00 0.00 33.43 4.40
4089 4353 3.930848 AGTCCACGTCATTTAATTCGGAC 59.069 43.478 6.32 6.32 41.61 4.79
4140 4404 5.088739 GTCTGAATTAATTGACGCAACCTG 58.911 41.667 5.17 0.00 0.00 4.00
4159 4423 2.946785 ACTATTACTCCCTCCGGTCTG 58.053 52.381 0.00 0.00 0.00 3.51
4220 4484 4.095211 GGTGGAACTTTACTACTCCCTCT 58.905 47.826 0.00 0.00 36.74 3.69
4529 4809 8.135529 TCTTGTCCACAGAATGACTATATAACG 58.864 37.037 0.00 0.00 39.69 3.18
4787 5068 0.530870 GGCGCAGGTACTTCATCCTC 60.531 60.000 10.83 0.00 34.60 3.71
4826 5107 3.539593 TTCCTCCCCTGAGCACCGA 62.540 63.158 0.00 0.00 37.29 4.69
4844 5125 1.209990 CTCTTGGCCAGCATCTTCTCT 59.790 52.381 5.11 0.00 0.00 3.10
4976 5257 5.916318 AGGCATCAAAGATGTTCTCTCTAG 58.084 41.667 8.60 0.00 31.03 2.43
5044 5329 2.373169 TGTTTCATCCAAGGTCAGCTCT 59.627 45.455 0.00 0.00 0.00 4.09
5065 5355 2.368875 ACATCACGGAAGGAAGTTCAGT 59.631 45.455 5.01 0.00 43.54 3.41
5194 5484 7.965107 GCAAGATTTGACTTAAAAGACGATGAT 59.035 33.333 0.00 0.00 0.00 2.45
5226 5516 3.521947 AGTAATTCCGAACGAAGGGAG 57.478 47.619 0.00 0.00 32.78 4.30
5227 5517 3.007182 ACAAGTAATTCCGAACGAAGGGA 59.993 43.478 0.00 0.00 32.78 4.20
5228 5518 3.332034 ACAAGTAATTCCGAACGAAGGG 58.668 45.455 0.00 0.00 32.78 3.95
5229 5519 4.243270 AGACAAGTAATTCCGAACGAAGG 58.757 43.478 0.00 0.00 32.78 3.46
5230 5520 4.030306 CGAGACAAGTAATTCCGAACGAAG 59.970 45.833 0.00 0.00 32.78 3.79
5231 5521 3.916172 CGAGACAAGTAATTCCGAACGAA 59.084 43.478 0.00 0.00 34.14 3.85
5232 5522 3.189080 TCGAGACAAGTAATTCCGAACGA 59.811 43.478 0.00 0.00 0.00 3.85
5233 5523 3.495193 TCGAGACAAGTAATTCCGAACG 58.505 45.455 0.00 0.00 0.00 3.95
5234 5524 5.834239 TTTCGAGACAAGTAATTCCGAAC 57.166 39.130 0.00 0.00 34.86 3.95
5235 5525 6.128391 CCATTTTCGAGACAAGTAATTCCGAA 60.128 38.462 0.00 0.00 33.57 4.30
5236 5526 5.350365 CCATTTTCGAGACAAGTAATTCCGA 59.650 40.000 0.00 0.00 0.00 4.55
5237 5527 5.350365 TCCATTTTCGAGACAAGTAATTCCG 59.650 40.000 0.00 0.00 0.00 4.30
5238 5528 6.737254 TCCATTTTCGAGACAAGTAATTCC 57.263 37.500 0.00 0.00 0.00 3.01
5239 5529 7.752695 ACATCCATTTTCGAGACAAGTAATTC 58.247 34.615 0.00 0.00 0.00 2.17
5240 5530 7.687941 ACATCCATTTTCGAGACAAGTAATT 57.312 32.000 0.00 0.00 0.00 1.40
5241 5531 8.964476 ATACATCCATTTTCGAGACAAGTAAT 57.036 30.769 0.00 0.00 0.00 1.89
5242 5532 8.258007 AGATACATCCATTTTCGAGACAAGTAA 58.742 33.333 0.00 0.00 0.00 2.24
5243 5533 7.782049 AGATACATCCATTTTCGAGACAAGTA 58.218 34.615 0.00 0.00 0.00 2.24
5244 5534 6.644347 AGATACATCCATTTTCGAGACAAGT 58.356 36.000 0.00 0.00 0.00 3.16
5245 5535 8.138074 TCTAGATACATCCATTTTCGAGACAAG 58.862 37.037 0.00 0.00 0.00 3.16
5246 5536 8.007405 TCTAGATACATCCATTTTCGAGACAA 57.993 34.615 0.00 0.00 0.00 3.18
5247 5537 7.582667 TCTAGATACATCCATTTTCGAGACA 57.417 36.000 0.00 0.00 0.00 3.41
5248 5538 8.138712 AGTTCTAGATACATCCATTTTCGAGAC 58.861 37.037 0.00 0.00 0.00 3.36
5249 5539 8.239038 AGTTCTAGATACATCCATTTTCGAGA 57.761 34.615 0.00 0.00 0.00 4.04
5250 5540 9.967346 TTAGTTCTAGATACATCCATTTTCGAG 57.033 33.333 0.00 0.00 0.00 4.04
5278 5568 8.391859 CGCAGAAATAGATGTATCTAGACGTAT 58.608 37.037 0.00 0.00 42.20 3.06
5279 5569 7.601508 TCGCAGAAATAGATGTATCTAGACGTA 59.398 37.037 0.00 0.00 42.20 3.57
5280 5570 6.427242 TCGCAGAAATAGATGTATCTAGACGT 59.573 38.462 0.00 0.00 42.20 4.34
5281 5571 6.739100 GTCGCAGAAATAGATGTATCTAGACG 59.261 42.308 0.00 5.27 39.84 4.18
5282 5572 7.585867 TGTCGCAGAAATAGATGTATCTAGAC 58.414 38.462 0.00 7.60 39.84 2.59
5283 5573 7.745620 TGTCGCAGAAATAGATGTATCTAGA 57.254 36.000 7.57 0.00 39.84 2.43
5284 5574 8.079203 ACTTGTCGCAGAAATAGATGTATCTAG 58.921 37.037 7.57 0.00 39.84 2.43
5285 5575 7.941919 ACTTGTCGCAGAAATAGATGTATCTA 58.058 34.615 4.22 4.22 40.45 1.98
5286 5576 6.810911 ACTTGTCGCAGAAATAGATGTATCT 58.189 36.000 0.00 0.00 39.69 1.98
5287 5577 8.575565 TTACTTGTCGCAGAAATAGATGTATC 57.424 34.615 0.00 0.00 39.69 2.24
5288 5578 9.547753 AATTACTTGTCGCAGAAATAGATGTAT 57.452 29.630 0.00 0.00 39.69 2.29
5289 5579 8.942338 AATTACTTGTCGCAGAAATAGATGTA 57.058 30.769 0.00 0.00 39.69 2.29
5290 5580 7.011482 GGAATTACTTGTCGCAGAAATAGATGT 59.989 37.037 0.00 0.00 39.69 3.06
5291 5581 7.348201 GGAATTACTTGTCGCAGAAATAGATG 58.652 38.462 0.00 0.00 39.69 2.90
5292 5582 6.201044 CGGAATTACTTGTCGCAGAAATAGAT 59.799 38.462 0.00 0.00 39.69 1.98
5293 5583 5.518847 CGGAATTACTTGTCGCAGAAATAGA 59.481 40.000 0.00 0.00 39.69 1.98
5294 5584 5.518847 TCGGAATTACTTGTCGCAGAAATAG 59.481 40.000 0.00 0.00 39.69 1.73
5295 5585 5.412640 TCGGAATTACTTGTCGCAGAAATA 58.587 37.500 0.00 0.00 39.69 1.40
5296 5586 4.250464 TCGGAATTACTTGTCGCAGAAAT 58.750 39.130 0.00 0.00 39.69 2.17
5297 5587 3.655486 TCGGAATTACTTGTCGCAGAAA 58.345 40.909 0.00 0.00 39.69 2.52
5298 5588 3.306917 TCGGAATTACTTGTCGCAGAA 57.693 42.857 0.00 0.00 39.69 3.02
5299 5589 2.991190 GTTCGGAATTACTTGTCGCAGA 59.009 45.455 0.00 0.00 0.00 4.26
5300 5590 2.222508 CGTTCGGAATTACTTGTCGCAG 60.223 50.000 0.00 0.00 0.00 5.18
5301 5591 1.722464 CGTTCGGAATTACTTGTCGCA 59.278 47.619 0.00 0.00 0.00 5.10
5302 5592 1.060122 CCGTTCGGAATTACTTGTCGC 59.940 52.381 5.19 0.00 0.00 5.19
5303 5593 2.597305 CTCCGTTCGGAATTACTTGTCG 59.403 50.000 14.79 0.00 33.41 4.35
5304 5594 2.928116 CCTCCGTTCGGAATTACTTGTC 59.072 50.000 14.79 0.00 33.41 3.18
5305 5595 2.354403 CCCTCCGTTCGGAATTACTTGT 60.354 50.000 14.79 0.00 33.41 3.16
5306 5596 2.093869 TCCCTCCGTTCGGAATTACTTG 60.094 50.000 14.79 1.97 33.41 3.16
5307 5597 2.167900 CTCCCTCCGTTCGGAATTACTT 59.832 50.000 14.79 0.00 33.41 2.24
5308 5598 1.755380 CTCCCTCCGTTCGGAATTACT 59.245 52.381 14.79 0.00 33.41 2.24
5309 5599 1.479730 ACTCCCTCCGTTCGGAATTAC 59.520 52.381 14.79 0.00 33.41 1.89
5310 5600 1.856629 ACTCCCTCCGTTCGGAATTA 58.143 50.000 14.79 2.82 33.41 1.40
5311 5601 1.856629 TACTCCCTCCGTTCGGAATT 58.143 50.000 14.79 0.00 33.41 2.17
5312 5602 2.083628 ATACTCCCTCCGTTCGGAAT 57.916 50.000 14.79 2.14 33.41 3.01
5313 5603 2.734755 TATACTCCCTCCGTTCGGAA 57.265 50.000 14.79 0.00 33.41 4.30
5314 5604 2.965671 ATATACTCCCTCCGTTCGGA 57.034 50.000 13.34 13.34 0.00 4.55
5315 5605 6.038050 GTCTAATATATACTCCCTCCGTTCGG 59.962 46.154 4.74 4.74 0.00 4.30
5316 5606 6.822676 AGTCTAATATATACTCCCTCCGTTCG 59.177 42.308 0.00 0.00 0.00 3.95
5317 5607 9.328845 CTAGTCTAATATATACTCCCTCCGTTC 57.671 40.741 0.00 0.00 0.00 3.95
5318 5608 7.774625 GCTAGTCTAATATATACTCCCTCCGTT 59.225 40.741 0.00 0.00 0.00 4.44
5319 5609 7.092533 TGCTAGTCTAATATATACTCCCTCCGT 60.093 40.741 0.00 0.00 0.00 4.69
5320 5610 7.281098 TGCTAGTCTAATATATACTCCCTCCG 58.719 42.308 0.00 0.00 0.00 4.63
5321 5611 9.649316 ATTGCTAGTCTAATATATACTCCCTCC 57.351 37.037 0.00 0.00 0.00 4.30
5323 5613 9.998752 ACATTGCTAGTCTAATATATACTCCCT 57.001 33.333 0.00 0.00 0.00 4.20
5325 5615 9.522804 GCACATTGCTAGTCTAATATATACTCC 57.477 37.037 0.00 0.00 40.96 3.85
5326 5616 9.522804 GGCACATTGCTAGTCTAATATATACTC 57.477 37.037 0.00 0.00 44.28 2.59
5327 5617 9.261035 AGGCACATTGCTAGTCTAATATATACT 57.739 33.333 0.00 0.00 44.28 2.12
5328 5618 9.307121 CAGGCACATTGCTAGTCTAATATATAC 57.693 37.037 0.00 0.00 44.28 1.47
5329 5619 9.035890 ACAGGCACATTGCTAGTCTAATATATA 57.964 33.333 0.00 0.00 44.28 0.86
5330 5620 7.821359 CACAGGCACATTGCTAGTCTAATATAT 59.179 37.037 0.00 0.00 44.28 0.86
5420 5720 2.485582 GCACTAGCTCGCAGTCGA 59.514 61.111 0.00 0.00 43.28 4.20
5442 5742 1.153369 CATGACGCTCAATCCCCGT 60.153 57.895 0.00 0.00 37.99 5.28
5443 5743 1.889105 CCATGACGCTCAATCCCCG 60.889 63.158 0.00 0.00 0.00 5.73
5483 5791 7.363530 GGGTTTGAAATTCAATAACCTACTCCC 60.364 40.741 21.87 13.11 37.40 4.30
5493 5837 8.112016 TGTTACGATGGGTTTGAAATTCAATA 57.888 30.769 9.41 0.00 36.11 1.90
5513 5857 5.163943 GCTTTTGTTCTCCGATCTCTGTTAC 60.164 44.000 0.00 0.00 0.00 2.50
5518 5862 2.611518 CGCTTTTGTTCTCCGATCTCT 58.388 47.619 0.00 0.00 0.00 3.10
5524 5868 1.207593 CTGCCGCTTTTGTTCTCCG 59.792 57.895 0.00 0.00 0.00 4.63
5528 5872 1.866853 CTCCCCTGCCGCTTTTGTTC 61.867 60.000 0.00 0.00 0.00 3.18
5544 5888 2.713167 TCTCATCCAATCCAATCCCTCC 59.287 50.000 0.00 0.00 0.00 4.30
5546 5890 4.050037 TCTTCTCATCCAATCCAATCCCT 58.950 43.478 0.00 0.00 0.00 4.20
5547 5891 4.103785 TCTCTTCTCATCCAATCCAATCCC 59.896 45.833 0.00 0.00 0.00 3.85
5549 5893 5.706369 CCATCTCTTCTCATCCAATCCAATC 59.294 44.000 0.00 0.00 0.00 2.67
5550 5894 5.632118 CCATCTCTTCTCATCCAATCCAAT 58.368 41.667 0.00 0.00 0.00 3.16
5551 5895 4.688045 GCCATCTCTTCTCATCCAATCCAA 60.688 45.833 0.00 0.00 0.00 3.53
5552 5896 3.181447 GCCATCTCTTCTCATCCAATCCA 60.181 47.826 0.00 0.00 0.00 3.41
5560 5904 1.449353 GGCCGCCATCTCTTCTCAT 59.551 57.895 3.91 0.00 0.00 2.90
5575 5919 2.378445 AACCATTTGCATAAACGGCC 57.622 45.000 0.00 0.00 32.49 6.13
5580 5924 5.587844 AGCACACAAAAACCATTTGCATAAA 59.412 32.000 0.00 0.00 32.93 1.40
5635 5979 2.093128 GCTACTCCCTCCGATCCAAAAA 60.093 50.000 0.00 0.00 0.00 1.94
5643 5987 2.693591 CACAATAAGCTACTCCCTCCGA 59.306 50.000 0.00 0.00 0.00 4.55
5650 5994 3.547613 GCATGCAGCACAATAAGCTACTC 60.548 47.826 14.21 0.00 44.79 2.59
5669 6013 4.001652 CGATTGAGATCCTTGCATAGCAT 58.998 43.478 0.00 0.00 38.76 3.79
5680 6024 4.574013 AGCATTTTCAGACGATTGAGATCC 59.426 41.667 0.00 0.00 0.00 3.36
5683 6027 4.996758 TCAAGCATTTTCAGACGATTGAGA 59.003 37.500 0.00 0.00 0.00 3.27
5684 6028 5.287170 TCAAGCATTTTCAGACGATTGAG 57.713 39.130 0.00 0.00 0.00 3.02
5686 6030 4.264614 GCATCAAGCATTTTCAGACGATTG 59.735 41.667 0.00 0.00 44.79 2.67
5712 6061 7.508134 CATCGAGCATTTTCAGACATATAGTG 58.492 38.462 0.00 0.00 0.00 2.74
5713 6062 6.146837 GCATCGAGCATTTTCAGACATATAGT 59.853 38.462 0.00 0.00 44.79 2.12
5745 6094 0.750249 TCAGACTCCAACTCGTTGCA 59.250 50.000 4.30 0.00 39.16 4.08
5778 6127 2.762327 CCCTTCAAACATAGCCAGCATT 59.238 45.455 0.00 0.00 0.00 3.56
5786 6135 7.118496 AGATAGACACTCCCTTCAAACATAG 57.882 40.000 0.00 0.00 0.00 2.23
5793 6142 2.025155 GCGAGATAGACACTCCCTTCA 58.975 52.381 0.00 0.00 0.00 3.02
5797 6146 1.008309 GCGCGAGATAGACACTCCC 60.008 63.158 12.10 0.00 0.00 4.30
5798 6147 1.369448 CGCGCGAGATAGACACTCC 60.369 63.158 28.94 0.00 0.00 3.85
5799 6148 2.006587 GCGCGCGAGATAGACACTC 61.007 63.158 37.18 6.98 0.00 3.51
5800 6149 2.024871 GCGCGCGAGATAGACACT 59.975 61.111 37.18 0.00 0.00 3.55
5819 6168 2.964924 AAAACGAGCGCTGCAACACG 62.965 55.000 18.48 14.32 0.00 4.49
5820 6169 1.262166 GAAAACGAGCGCTGCAACAC 61.262 55.000 18.48 0.00 0.00 3.32
5821 6170 1.010125 GAAAACGAGCGCTGCAACA 60.010 52.632 18.48 0.00 0.00 3.33
5822 6171 2.069277 CGAAAACGAGCGCTGCAAC 61.069 57.895 18.48 0.00 0.00 4.17
5823 6172 2.248140 CGAAAACGAGCGCTGCAA 59.752 55.556 18.48 0.00 0.00 4.08
5824 6173 3.711842 CCGAAAACGAGCGCTGCA 61.712 61.111 18.48 0.00 0.00 4.41
5825 6174 3.411351 TCCGAAAACGAGCGCTGC 61.411 61.111 18.48 5.60 0.00 5.25
5826 6175 2.215478 CTGTCCGAAAACGAGCGCTG 62.215 60.000 18.48 10.31 0.00 5.18
5827 6176 2.022129 CTGTCCGAAAACGAGCGCT 61.022 57.895 11.27 11.27 0.00 5.92
5828 6177 2.470286 CTGTCCGAAAACGAGCGC 59.530 61.111 0.00 0.00 0.00 5.92
5829 6178 3.011760 GCCTGTCCGAAAACGAGCG 62.012 63.158 0.00 0.00 0.00 5.03
5830 6179 2.677979 GGCCTGTCCGAAAACGAGC 61.678 63.158 0.00 0.00 0.00 5.03
5831 6180 0.245539 TAGGCCTGTCCGAAAACGAG 59.754 55.000 17.99 0.00 40.77 4.18
5832 6181 0.680618 TTAGGCCTGTCCGAAAACGA 59.319 50.000 17.99 0.00 40.77 3.85
5833 6182 1.734163 ATTAGGCCTGTCCGAAAACG 58.266 50.000 17.99 0.00 40.77 3.60
5834 6183 3.366985 CCAAATTAGGCCTGTCCGAAAAC 60.367 47.826 17.99 0.00 40.77 2.43
5835 6184 2.823154 CCAAATTAGGCCTGTCCGAAAA 59.177 45.455 17.99 0.00 40.77 2.29
5836 6185 2.040545 TCCAAATTAGGCCTGTCCGAAA 59.959 45.455 17.99 0.00 40.77 3.46
5837 6186 1.631388 TCCAAATTAGGCCTGTCCGAA 59.369 47.619 17.99 0.16 40.77 4.30
5838 6187 1.281419 TCCAAATTAGGCCTGTCCGA 58.719 50.000 17.99 0.00 40.77 4.55
5839 6188 2.122783 TTCCAAATTAGGCCTGTCCG 57.877 50.000 17.99 0.00 40.77 4.79
5840 6189 3.193479 CACTTTCCAAATTAGGCCTGTCC 59.807 47.826 17.99 0.00 0.00 4.02
5841 6190 4.079253 TCACTTTCCAAATTAGGCCTGTC 58.921 43.478 17.99 0.00 0.00 3.51
5842 6191 3.826729 GTCACTTTCCAAATTAGGCCTGT 59.173 43.478 17.99 0.00 0.00 4.00
5843 6192 4.082125 AGTCACTTTCCAAATTAGGCCTG 58.918 43.478 17.99 0.00 0.00 4.85
5844 6193 4.388577 AGTCACTTTCCAAATTAGGCCT 57.611 40.909 11.78 11.78 0.00 5.19
5845 6194 5.710567 ACTAAGTCACTTTCCAAATTAGGCC 59.289 40.000 0.00 0.00 0.00 5.19
5846 6195 6.819397 ACTAAGTCACTTTCCAAATTAGGC 57.181 37.500 0.00 0.00 0.00 3.93
5847 6196 9.280174 TGTAACTAAGTCACTTTCCAAATTAGG 57.720 33.333 0.00 0.00 0.00 2.69
5850 6199 8.576442 CCATGTAACTAAGTCACTTTCCAAATT 58.424 33.333 0.00 0.00 0.00 1.82
5851 6200 7.942341 TCCATGTAACTAAGTCACTTTCCAAAT 59.058 33.333 0.00 0.00 0.00 2.32
5852 6201 7.284074 TCCATGTAACTAAGTCACTTTCCAAA 58.716 34.615 0.00 0.00 0.00 3.28
5853 6202 6.833041 TCCATGTAACTAAGTCACTTTCCAA 58.167 36.000 0.00 0.00 0.00 3.53
5854 6203 6.428083 TCCATGTAACTAAGTCACTTTCCA 57.572 37.500 0.00 0.00 0.00 3.53
5855 6204 7.923414 AATCCATGTAACTAAGTCACTTTCC 57.077 36.000 0.00 0.00 0.00 3.13
5862 6211 9.503399 CCCCTAATTAATCCATGTAACTAAGTC 57.497 37.037 0.00 0.00 0.00 3.01
5863 6212 9.010767 ACCCCTAATTAATCCATGTAACTAAGT 57.989 33.333 0.00 0.00 0.00 2.24
5864 6213 9.284968 CACCCCTAATTAATCCATGTAACTAAG 57.715 37.037 0.00 0.00 0.00 2.18
5865 6214 8.221944 CCACCCCTAATTAATCCATGTAACTAA 58.778 37.037 0.00 0.00 0.00 2.24
5866 6215 7.573238 TCCACCCCTAATTAATCCATGTAACTA 59.427 37.037 0.00 0.00 0.00 2.24
5867 6216 6.391649 TCCACCCCTAATTAATCCATGTAACT 59.608 38.462 0.00 0.00 0.00 2.24
5868 6217 6.607019 TCCACCCCTAATTAATCCATGTAAC 58.393 40.000 0.00 0.00 0.00 2.50
5869 6218 6.850263 TCCACCCCTAATTAATCCATGTAA 57.150 37.500 0.00 0.00 0.00 2.41
5870 6219 7.415004 AATCCACCCCTAATTAATCCATGTA 57.585 36.000 0.00 0.00 0.00 2.29
5871 6220 5.948481 ATCCACCCCTAATTAATCCATGT 57.052 39.130 0.00 0.00 0.00 3.21
5872 6221 8.899887 ATTAATCCACCCCTAATTAATCCATG 57.100 34.615 0.00 0.00 32.71 3.66
5875 6224 8.967918 GCTAATTAATCCACCCCTAATTAATCC 58.032 37.037 0.00 0.00 35.54 3.01
5876 6225 9.528489 TGCTAATTAATCCACCCCTAATTAATC 57.472 33.333 0.00 0.00 35.54 1.75
5877 6226 9.533831 CTGCTAATTAATCCACCCCTAATTAAT 57.466 33.333 0.00 0.00 37.23 1.40
5878 6227 7.450323 GCTGCTAATTAATCCACCCCTAATTAA 59.550 37.037 0.00 0.00 30.82 1.40
5879 6228 6.946009 GCTGCTAATTAATCCACCCCTAATTA 59.054 38.462 0.00 0.00 0.00 1.40
5880 6229 5.775195 GCTGCTAATTAATCCACCCCTAATT 59.225 40.000 0.00 0.00 0.00 1.40
5881 6230 5.325239 GCTGCTAATTAATCCACCCCTAAT 58.675 41.667 0.00 0.00 0.00 1.73
5882 6231 4.725490 GCTGCTAATTAATCCACCCCTAA 58.275 43.478 0.00 0.00 0.00 2.69
5883 6232 3.244422 CGCTGCTAATTAATCCACCCCTA 60.244 47.826 0.00 0.00 0.00 3.53
5884 6233 2.487265 CGCTGCTAATTAATCCACCCCT 60.487 50.000 0.00 0.00 0.00 4.79
5885 6234 1.880027 CGCTGCTAATTAATCCACCCC 59.120 52.381 0.00 0.00 0.00 4.95
5886 6235 1.880027 CCGCTGCTAATTAATCCACCC 59.120 52.381 0.00 0.00 0.00 4.61
5887 6236 1.880027 CCCGCTGCTAATTAATCCACC 59.120 52.381 0.00 0.00 0.00 4.61
5888 6237 1.266989 GCCCGCTGCTAATTAATCCAC 59.733 52.381 0.00 0.00 36.87 4.02
5889 6238 1.604604 GCCCGCTGCTAATTAATCCA 58.395 50.000 0.00 0.00 36.87 3.41
5890 6239 0.881796 GGCCCGCTGCTAATTAATCC 59.118 55.000 0.00 0.00 40.92 3.01
5891 6240 0.881796 GGGCCCGCTGCTAATTAATC 59.118 55.000 5.69 0.00 40.92 1.75
5892 6241 0.539669 GGGGCCCGCTGCTAATTAAT 60.540 55.000 17.79 0.00 40.92 1.40
5893 6242 1.152839 GGGGCCCGCTGCTAATTAA 60.153 57.895 17.79 0.00 40.92 1.40
5894 6243 2.513895 GGGGCCCGCTGCTAATTA 59.486 61.111 17.79 0.00 40.92 1.40
5895 6244 4.522975 GGGGGCCCGCTGCTAATT 62.523 66.667 30.90 0.00 40.92 1.40
5902 6251 3.662117 GATTTTCAGGGGGCCCGCT 62.662 63.158 34.79 34.79 41.95 5.52
5903 6252 3.147595 GATTTTCAGGGGGCCCGC 61.148 66.667 31.08 31.08 41.95 6.13
5904 6253 1.754234 CTGATTTTCAGGGGGCCCG 60.754 63.158 17.79 3.28 40.71 6.13
5905 6254 4.362479 CTGATTTTCAGGGGGCCC 57.638 61.111 15.76 15.76 40.71 5.80
5912 6261 1.315257 CGCCACCCCCTGATTTTCAG 61.315 60.000 0.00 0.00 43.91 3.02
5913 6262 1.304052 CGCCACCCCCTGATTTTCA 60.304 57.895 0.00 0.00 0.00 2.69
5914 6263 0.395724 ATCGCCACCCCCTGATTTTC 60.396 55.000 0.00 0.00 0.00 2.29
5915 6264 0.041090 AATCGCCACCCCCTGATTTT 59.959 50.000 0.00 0.00 0.00 1.82
5916 6265 0.923358 TAATCGCCACCCCCTGATTT 59.077 50.000 0.00 0.00 33.42 2.17
5917 6266 0.474184 CTAATCGCCACCCCCTGATT 59.526 55.000 0.00 0.00 35.40 2.57
5918 6267 0.694444 ACTAATCGCCACCCCCTGAT 60.694 55.000 0.00 0.00 0.00 2.90
5919 6268 1.306654 ACTAATCGCCACCCCCTGA 60.307 57.895 0.00 0.00 0.00 3.86
5920 6269 1.153168 CACTAATCGCCACCCCCTG 60.153 63.158 0.00 0.00 0.00 4.45
5921 6270 1.205460 AACACTAATCGCCACCCCCT 61.205 55.000 0.00 0.00 0.00 4.79
5922 6271 1.029947 CAACACTAATCGCCACCCCC 61.030 60.000 0.00 0.00 0.00 5.40
5923 6272 0.035820 TCAACACTAATCGCCACCCC 60.036 55.000 0.00 0.00 0.00 4.95
5924 6273 2.038387 ATCAACACTAATCGCCACCC 57.962 50.000 0.00 0.00 0.00 4.61


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.