Multiple sequence alignment - TraesCS5D01G485000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G485000 chr5D 100.000 2192 0 0 812 3003 520843056 520840865 0.000000e+00 4048.0
1 TraesCS5D01G485000 chr5D 100.000 602 0 0 1 602 520843867 520843266 0.000000e+00 1112.0
2 TraesCS5D01G485000 chr5D 91.053 380 28 2 2622 3001 520807001 520806628 2.670000e-140 508.0
3 TraesCS5D01G485000 chr5D 81.057 227 31 7 2313 2534 495064191 495064410 1.430000e-38 171.0
4 TraesCS5D01G485000 chr5D 91.250 80 7 0 2464 2543 520807276 520807197 3.170000e-20 110.0
5 TraesCS5D01G485000 chr5A 88.916 1615 120 28 946 2546 649368548 649366979 0.000000e+00 1936.0
6 TraesCS5D01G485000 chr5A 91.471 469 33 3 2541 3003 649366949 649366482 3.260000e-179 638.0
7 TraesCS5D01G485000 chr5A 80.263 228 38 7 2313 2534 619110447 619110673 6.660000e-37 165.0
8 TraesCS5D01G485000 chr5B 88.997 1445 100 30 852 2289 656731443 656730051 0.000000e+00 1733.0
9 TraesCS5D01G485000 chr5B 94.609 946 40 6 1448 2382 656471374 656470429 0.000000e+00 1454.0
10 TraesCS5D01G485000 chr5B 88.391 603 51 9 852 1450 656477928 656477341 0.000000e+00 708.0
11 TraesCS5D01G485000 chr5B 93.316 374 25 0 2630 3003 656470088 656469715 1.220000e-153 553.0
12 TraesCS5D01G485000 chr5B 94.509 346 19 0 2658 3003 656728003 656727658 4.410000e-148 534.0
13 TraesCS5D01G485000 chr5B 97.479 238 5 1 2386 2623 656470381 656470145 3.600000e-109 405.0
14 TraesCS5D01G485000 chr5B 94.231 52 2 1 1965 2015 656729475 656729424 8.930000e-11 78.7
15 TraesCS5D01G485000 chr4A 79.718 355 49 13 13 363 49257390 49257055 5.000000e-58 235.0
16 TraesCS5D01G485000 chr2B 78.261 368 61 9 6 372 445257212 445256863 5.040000e-53 219.0
17 TraesCS5D01G485000 chr4D 79.758 331 42 13 13 340 414153663 414153971 1.810000e-52 217.0
18 TraesCS5D01G485000 chr4D 75.000 332 61 12 12 339 62308885 62308572 1.880000e-27 134.0
19 TraesCS5D01G485000 chr6D 82.511 223 39 0 2665 2887 84649685 84649463 2.360000e-46 196.0
20 TraesCS5D01G485000 chr6D 80.889 225 39 4 2665 2887 85624887 85625109 1.110000e-39 174.0
21 TraesCS5D01G485000 chr1A 78.006 341 45 14 1 340 36130332 36130643 1.420000e-43 187.0
22 TraesCS5D01G485000 chr6A 80.631 222 43 0 2665 2886 101860189 101859968 3.980000e-39 172.0
23 TraesCS5D01G485000 chrUn 75.686 255 46 8 1 253 46253021 46252781 2.450000e-21 113.0
24 TraesCS5D01G485000 chr3B 83.065 124 15 4 218 340 43605004 43604886 1.140000e-19 108.0
25 TraesCS5D01G485000 chr7B 79.861 144 20 6 178 319 642750493 642750357 2.460000e-16 97.1
26 TraesCS5D01G485000 chr7D 77.987 159 28 5 183 340 22524029 22523877 3.190000e-15 93.5
27 TraesCS5D01G485000 chr4B 73.226 310 61 14 30 333 89939174 89938881 3.190000e-15 93.5
28 TraesCS5D01G485000 chr6B 78.947 133 17 8 212 340 384973038 384973163 2.480000e-11 80.5
29 TraesCS5D01G485000 chr7A 80.000 115 13 5 227 340 7130823 7130718 3.210000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G485000 chr5D 520840865 520843867 3002 True 2580.0 4048 100.000000 1 3003 2 chr5D.!!$R2 3002
1 TraesCS5D01G485000 chr5D 520806628 520807276 648 True 309.0 508 91.151500 2464 3001 2 chr5D.!!$R1 537
2 TraesCS5D01G485000 chr5A 649366482 649368548 2066 True 1287.0 1936 90.193500 946 3003 2 chr5A.!!$R1 2057
3 TraesCS5D01G485000 chr5B 656469715 656471374 1659 True 804.0 1454 95.134667 1448 3003 3 chr5B.!!$R2 1555
4 TraesCS5D01G485000 chr5B 656727658 656731443 3785 True 781.9 1733 92.579000 852 3003 3 chr5B.!!$R3 2151
5 TraesCS5D01G485000 chr5B 656477341 656477928 587 True 708.0 708 88.391000 852 1450 1 chr5B.!!$R1 598

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
325 326 0.028770 TGCAACGTTTTTGCCTCTCG 59.971 50.0 8.16 0.0 44.32 4.04 F
326 327 0.028902 GCAACGTTTTTGCCTCTCGT 59.971 50.0 0.00 0.0 39.38 4.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1918 1926 0.673437 GGGCCTCTCTCATCTTCTCG 59.327 60.0 0.84 0.0 0.00 4.04 R
2217 2236 2.799126 AATGTGGATTAACGGCCAGA 57.201 45.0 2.24 0.0 34.22 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 7.687941 TTAGATCATGAAAAACCTCCAACTC 57.312 36.000 0.00 0.00 0.00 3.01
26 27 5.885465 AGATCATGAAAAACCTCCAACTCT 58.115 37.500 0.00 0.00 0.00 3.24
27 28 7.020827 AGATCATGAAAAACCTCCAACTCTA 57.979 36.000 0.00 0.00 0.00 2.43
28 29 7.461749 AGATCATGAAAAACCTCCAACTCTAA 58.538 34.615 0.00 0.00 0.00 2.10
29 30 6.877611 TCATGAAAAACCTCCAACTCTAAC 57.122 37.500 0.00 0.00 0.00 2.34
30 31 6.361433 TCATGAAAAACCTCCAACTCTAACA 58.639 36.000 0.00 0.00 0.00 2.41
31 32 6.831353 TCATGAAAAACCTCCAACTCTAACAA 59.169 34.615 0.00 0.00 0.00 2.83
32 33 7.340743 TCATGAAAAACCTCCAACTCTAACAAA 59.659 33.333 0.00 0.00 0.00 2.83
33 34 7.654022 TGAAAAACCTCCAACTCTAACAAAT 57.346 32.000 0.00 0.00 0.00 2.32
34 35 7.488322 TGAAAAACCTCCAACTCTAACAAATG 58.512 34.615 0.00 0.00 0.00 2.32
35 36 7.340743 TGAAAAACCTCCAACTCTAACAAATGA 59.659 33.333 0.00 0.00 0.00 2.57
36 37 7.839680 AAAACCTCCAACTCTAACAAATGAT 57.160 32.000 0.00 0.00 0.00 2.45
37 38 6.824305 AACCTCCAACTCTAACAAATGATG 57.176 37.500 0.00 0.00 0.00 3.07
38 39 5.880901 ACCTCCAACTCTAACAAATGATGT 58.119 37.500 0.00 0.00 46.82 3.06
39 40 7.016153 ACCTCCAACTCTAACAAATGATGTA 57.984 36.000 0.00 0.00 42.99 2.29
40 41 7.458397 ACCTCCAACTCTAACAAATGATGTAA 58.542 34.615 0.00 0.00 42.99 2.41
41 42 7.942341 ACCTCCAACTCTAACAAATGATGTAAA 59.058 33.333 0.00 0.00 42.99 2.01
42 43 8.792633 CCTCCAACTCTAACAAATGATGTAAAA 58.207 33.333 0.00 0.00 42.99 1.52
52 53 8.532977 AACAAATGATGTAAAATAGGTGTTGC 57.467 30.769 0.00 0.00 42.99 4.17
53 54 7.665690 ACAAATGATGTAAAATAGGTGTTGCA 58.334 30.769 0.00 0.00 41.63 4.08
54 55 8.147058 ACAAATGATGTAAAATAGGTGTTGCAA 58.853 29.630 0.00 0.00 41.63 4.08
55 56 8.986847 CAAATGATGTAAAATAGGTGTTGCAAA 58.013 29.630 0.00 0.00 0.00 3.68
56 57 9.553064 AAATGATGTAAAATAGGTGTTGCAAAA 57.447 25.926 0.00 0.00 0.00 2.44
57 58 9.723601 AATGATGTAAAATAGGTGTTGCAAAAT 57.276 25.926 0.00 0.00 0.00 1.82
59 60 9.632807 TGATGTAAAATAGGTGTTGCAAAATAC 57.367 29.630 0.00 0.54 0.00 1.89
60 61 9.632807 GATGTAAAATAGGTGTTGCAAAATACA 57.367 29.630 0.00 0.00 0.00 2.29
62 63 9.632807 TGTAAAATAGGTGTTGCAAAATACATC 57.367 29.630 0.00 0.00 0.00 3.06
63 64 9.632807 GTAAAATAGGTGTTGCAAAATACATCA 57.367 29.630 0.00 0.00 0.00 3.07
64 65 8.532977 AAAATAGGTGTTGCAAAATACATCAC 57.467 30.769 0.00 2.88 37.13 3.06
65 66 6.832520 ATAGGTGTTGCAAAATACATCACA 57.167 33.333 0.00 0.00 38.77 3.58
66 67 5.125100 AGGTGTTGCAAAATACATCACAG 57.875 39.130 0.00 0.00 38.77 3.66
67 68 4.826733 AGGTGTTGCAAAATACATCACAGA 59.173 37.500 0.00 0.00 38.77 3.41
68 69 5.477984 AGGTGTTGCAAAATACATCACAGAT 59.522 36.000 0.00 0.00 38.77 2.90
69 70 5.574055 GGTGTTGCAAAATACATCACAGATG 59.426 40.000 0.00 5.50 38.77 2.90
70 71 6.151691 GTGTTGCAAAATACATCACAGATGT 58.848 36.000 15.94 15.94 37.57 3.06
71 72 6.306356 GTGTTGCAAAATACATCACAGATGTC 59.694 38.462 15.21 2.33 37.57 3.06
72 73 6.207221 TGTTGCAAAATACATCACAGATGTCT 59.793 34.615 15.21 4.26 33.76 3.41
73 74 6.822667 TGCAAAATACATCACAGATGTCTT 57.177 33.333 15.21 9.84 33.76 3.01
74 75 6.845302 TGCAAAATACATCACAGATGTCTTC 58.155 36.000 15.21 3.18 33.76 2.87
75 76 6.656270 TGCAAAATACATCACAGATGTCTTCT 59.344 34.615 15.21 0.00 33.76 2.85
76 77 7.175467 TGCAAAATACATCACAGATGTCTTCTT 59.825 33.333 15.21 7.50 33.76 2.52
77 78 7.695618 GCAAAATACATCACAGATGTCTTCTTC 59.304 37.037 15.21 3.13 33.76 2.87
78 79 7.856145 AAATACATCACAGATGTCTTCTTCC 57.144 36.000 15.21 0.00 33.76 3.46
79 80 3.854666 ACATCACAGATGTCTTCTTCCG 58.145 45.455 6.81 0.00 29.93 4.30
80 81 3.511540 ACATCACAGATGTCTTCTTCCGA 59.488 43.478 6.81 0.00 29.93 4.55
81 82 3.857549 TCACAGATGTCTTCTTCCGAG 57.142 47.619 0.00 0.00 29.93 4.63
82 83 3.157881 TCACAGATGTCTTCTTCCGAGT 58.842 45.455 0.00 0.00 29.93 4.18
83 84 3.057245 TCACAGATGTCTTCTTCCGAGTG 60.057 47.826 0.00 0.00 29.93 3.51
84 85 2.266554 CAGATGTCTTCTTCCGAGTGC 58.733 52.381 0.00 0.00 29.93 4.40
85 86 1.205893 AGATGTCTTCTTCCGAGTGCC 59.794 52.381 0.00 0.00 0.00 5.01
86 87 0.250513 ATGTCTTCTTCCGAGTGCCC 59.749 55.000 0.00 0.00 0.00 5.36
87 88 0.832135 TGTCTTCTTCCGAGTGCCCT 60.832 55.000 0.00 0.00 0.00 5.19
88 89 1.183549 GTCTTCTTCCGAGTGCCCTA 58.816 55.000 0.00 0.00 0.00 3.53
89 90 1.757699 GTCTTCTTCCGAGTGCCCTAT 59.242 52.381 0.00 0.00 0.00 2.57
90 91 2.168728 GTCTTCTTCCGAGTGCCCTATT 59.831 50.000 0.00 0.00 0.00 1.73
91 92 2.838202 TCTTCTTCCGAGTGCCCTATTT 59.162 45.455 0.00 0.00 0.00 1.40
92 93 3.263425 TCTTCTTCCGAGTGCCCTATTTT 59.737 43.478 0.00 0.00 0.00 1.82
93 94 4.468510 TCTTCTTCCGAGTGCCCTATTTTA 59.531 41.667 0.00 0.00 0.00 1.52
94 95 4.402056 TCTTCCGAGTGCCCTATTTTAG 57.598 45.455 0.00 0.00 0.00 1.85
95 96 4.028131 TCTTCCGAGTGCCCTATTTTAGA 58.972 43.478 0.00 0.00 0.00 2.10
96 97 4.654262 TCTTCCGAGTGCCCTATTTTAGAT 59.346 41.667 0.00 0.00 0.00 1.98
97 98 4.602340 TCCGAGTGCCCTATTTTAGATC 57.398 45.455 0.00 0.00 0.00 2.75
98 99 3.964688 TCCGAGTGCCCTATTTTAGATCA 59.035 43.478 0.00 0.00 0.00 2.92
99 100 4.593206 TCCGAGTGCCCTATTTTAGATCAT 59.407 41.667 0.00 0.00 0.00 2.45
100 101 5.778241 TCCGAGTGCCCTATTTTAGATCATA 59.222 40.000 0.00 0.00 0.00 2.15
101 102 6.440647 TCCGAGTGCCCTATTTTAGATCATAT 59.559 38.462 0.00 0.00 0.00 1.78
102 103 6.536582 CCGAGTGCCCTATTTTAGATCATATG 59.463 42.308 0.00 0.00 0.00 1.78
103 104 7.099764 CGAGTGCCCTATTTTAGATCATATGT 58.900 38.462 1.90 0.00 0.00 2.29
104 105 8.251026 CGAGTGCCCTATTTTAGATCATATGTA 58.749 37.037 1.90 0.00 0.00 2.29
106 107 9.896645 AGTGCCCTATTTTAGATCATATGTATG 57.103 33.333 1.90 0.00 35.04 2.39
107 108 9.890629 GTGCCCTATTTTAGATCATATGTATGA 57.109 33.333 1.90 5.27 45.78 2.15
109 110 9.050601 GCCCTATTTTAGATCATATGTATGAGC 57.949 37.037 9.61 9.61 46.43 4.26
144 145 9.745018 ATATAAAAATAGCACCTAGTGATGCAT 57.255 29.630 0.00 0.00 44.59 3.96
146 147 9.745018 ATAAAAATAGCACCTAGTGATGCATAT 57.255 29.630 0.00 0.00 44.59 1.78
147 148 8.469309 AAAAATAGCACCTAGTGATGCATATT 57.531 30.769 0.00 9.81 44.59 1.28
148 149 8.469309 AAAATAGCACCTAGTGATGCATATTT 57.531 30.769 0.00 13.40 44.59 1.40
149 150 8.469309 AAATAGCACCTAGTGATGCATATTTT 57.531 30.769 0.00 4.93 44.59 1.82
150 151 5.762825 AGCACCTAGTGATGCATATTTTG 57.237 39.130 0.00 0.00 44.59 2.44
151 152 5.195940 AGCACCTAGTGATGCATATTTTGT 58.804 37.500 0.00 0.00 44.59 2.83
152 153 5.653769 AGCACCTAGTGATGCATATTTTGTT 59.346 36.000 0.00 0.00 44.59 2.83
153 154 6.153340 AGCACCTAGTGATGCATATTTTGTTT 59.847 34.615 0.00 0.00 44.59 2.83
154 155 6.473455 GCACCTAGTGATGCATATTTTGTTTC 59.527 38.462 0.00 0.00 41.65 2.78
155 156 7.537715 CACCTAGTGATGCATATTTTGTTTCA 58.462 34.615 0.00 0.00 35.23 2.69
156 157 7.699391 CACCTAGTGATGCATATTTTGTTTCAG 59.301 37.037 0.00 0.00 35.23 3.02
157 158 6.694411 CCTAGTGATGCATATTTTGTTTCAGC 59.306 38.462 0.00 0.00 0.00 4.26
158 159 5.413499 AGTGATGCATATTTTGTTTCAGCC 58.587 37.500 0.00 0.00 0.00 4.85
159 160 4.266029 GTGATGCATATTTTGTTTCAGCCG 59.734 41.667 0.00 0.00 0.00 5.52
160 161 2.605030 TGCATATTTTGTTTCAGCCGC 58.395 42.857 0.00 0.00 0.00 6.53
161 162 1.583404 GCATATTTTGTTTCAGCCGCG 59.417 47.619 0.00 0.00 0.00 6.46
162 163 2.862512 CATATTTTGTTTCAGCCGCGT 58.137 42.857 4.92 0.00 0.00 6.01
163 164 2.323939 TATTTTGTTTCAGCCGCGTG 57.676 45.000 4.92 0.00 0.00 5.34
164 165 0.318614 ATTTTGTTTCAGCCGCGTGG 60.319 50.000 11.67 11.67 38.77 4.94
165 166 1.658686 TTTTGTTTCAGCCGCGTGGT 61.659 50.000 17.91 0.02 37.67 4.16
166 167 2.054140 TTTGTTTCAGCCGCGTGGTC 62.054 55.000 17.91 9.11 37.67 4.02
167 168 4.072088 GTTTCAGCCGCGTGGTCG 62.072 66.667 17.91 8.19 37.67 4.79
188 189 3.717294 GTGGGCTCCCGTGGTGAT 61.717 66.667 0.00 0.00 39.42 3.06
189 190 3.716195 TGGGCTCCCGTGGTGATG 61.716 66.667 0.00 0.00 39.42 3.07
190 191 3.717294 GGGCTCCCGTGGTGATGT 61.717 66.667 0.00 0.00 0.00 3.06
191 192 2.436646 GGCTCCCGTGGTGATGTG 60.437 66.667 0.00 0.00 0.00 3.21
192 193 2.436646 GCTCCCGTGGTGATGTGG 60.437 66.667 0.00 0.00 0.00 4.17
193 194 2.954684 GCTCCCGTGGTGATGTGGA 61.955 63.158 0.00 0.00 0.00 4.02
194 195 1.676968 CTCCCGTGGTGATGTGGAA 59.323 57.895 0.00 0.00 0.00 3.53
195 196 0.253044 CTCCCGTGGTGATGTGGAAT 59.747 55.000 0.00 0.00 0.00 3.01
196 197 0.695924 TCCCGTGGTGATGTGGAATT 59.304 50.000 0.00 0.00 0.00 2.17
197 198 1.074727 TCCCGTGGTGATGTGGAATTT 59.925 47.619 0.00 0.00 0.00 1.82
198 199 1.202114 CCCGTGGTGATGTGGAATTTG 59.798 52.381 0.00 0.00 0.00 2.32
199 200 1.402720 CCGTGGTGATGTGGAATTTGC 60.403 52.381 0.00 0.00 0.00 3.68
200 201 1.541147 CGTGGTGATGTGGAATTTGCT 59.459 47.619 0.00 0.00 0.00 3.91
201 202 2.414559 CGTGGTGATGTGGAATTTGCTC 60.415 50.000 0.00 0.00 0.00 4.26
202 203 1.811965 TGGTGATGTGGAATTTGCTCG 59.188 47.619 0.00 0.00 0.00 5.03
203 204 2.083774 GGTGATGTGGAATTTGCTCGA 58.916 47.619 0.00 0.00 0.00 4.04
204 205 2.096496 GGTGATGTGGAATTTGCTCGAG 59.904 50.000 8.45 8.45 0.00 4.04
205 206 3.002791 GTGATGTGGAATTTGCTCGAGA 58.997 45.455 18.75 0.00 0.00 4.04
206 207 3.063180 GTGATGTGGAATTTGCTCGAGAG 59.937 47.826 18.75 0.00 0.00 3.20
240 241 4.086199 CAAATTTGCATCATTTGGTGGC 57.914 40.909 18.13 0.00 37.78 5.01
241 242 2.406596 ATTTGCATCATTTGGTGGCC 57.593 45.000 0.00 0.00 0.00 5.36
242 243 1.350071 TTTGCATCATTTGGTGGCCT 58.650 45.000 3.32 0.00 0.00 5.19
243 244 0.896923 TTGCATCATTTGGTGGCCTC 59.103 50.000 3.32 0.00 0.00 4.70
244 245 0.040058 TGCATCATTTGGTGGCCTCT 59.960 50.000 3.32 0.00 0.00 3.69
245 246 1.188863 GCATCATTTGGTGGCCTCTT 58.811 50.000 3.32 0.00 0.00 2.85
246 247 1.551883 GCATCATTTGGTGGCCTCTTT 59.448 47.619 3.32 0.00 0.00 2.52
247 248 2.027837 GCATCATTTGGTGGCCTCTTTT 60.028 45.455 3.32 0.00 0.00 2.27
248 249 3.195396 GCATCATTTGGTGGCCTCTTTTA 59.805 43.478 3.32 0.00 0.00 1.52
249 250 4.747810 CATCATTTGGTGGCCTCTTTTAC 58.252 43.478 3.32 0.00 0.00 2.01
250 251 3.838565 TCATTTGGTGGCCTCTTTTACA 58.161 40.909 3.32 0.00 0.00 2.41
251 252 4.415596 TCATTTGGTGGCCTCTTTTACAT 58.584 39.130 3.32 0.00 0.00 2.29
252 253 4.462483 TCATTTGGTGGCCTCTTTTACATC 59.538 41.667 3.32 0.00 0.00 3.06
253 254 3.517296 TTGGTGGCCTCTTTTACATCA 57.483 42.857 3.32 0.00 0.00 3.07
254 255 2.790433 TGGTGGCCTCTTTTACATCAC 58.210 47.619 3.32 0.00 0.00 3.06
255 256 2.107378 TGGTGGCCTCTTTTACATCACA 59.893 45.455 3.32 0.00 0.00 3.58
256 257 2.488153 GGTGGCCTCTTTTACATCACAC 59.512 50.000 3.32 0.00 0.00 3.82
257 258 2.488153 GTGGCCTCTTTTACATCACACC 59.512 50.000 3.32 0.00 0.00 4.16
258 259 2.092323 GGCCTCTTTTACATCACACCC 58.908 52.381 0.00 0.00 0.00 4.61
259 260 2.290960 GGCCTCTTTTACATCACACCCT 60.291 50.000 0.00 0.00 0.00 4.34
260 261 3.010420 GCCTCTTTTACATCACACCCTC 58.990 50.000 0.00 0.00 0.00 4.30
261 262 3.559171 GCCTCTTTTACATCACACCCTCA 60.559 47.826 0.00 0.00 0.00 3.86
262 263 4.848357 CCTCTTTTACATCACACCCTCAT 58.152 43.478 0.00 0.00 0.00 2.90
263 264 4.878397 CCTCTTTTACATCACACCCTCATC 59.122 45.833 0.00 0.00 0.00 2.92
264 265 4.843728 TCTTTTACATCACACCCTCATCC 58.156 43.478 0.00 0.00 0.00 3.51
265 266 3.644966 TTTACATCACACCCTCATCCC 57.355 47.619 0.00 0.00 0.00 3.85
266 267 2.262266 TACATCACACCCTCATCCCA 57.738 50.000 0.00 0.00 0.00 4.37
267 268 1.600058 ACATCACACCCTCATCCCAT 58.400 50.000 0.00 0.00 0.00 4.00
268 269 1.492176 ACATCACACCCTCATCCCATC 59.508 52.381 0.00 0.00 0.00 3.51
269 270 1.143813 ATCACACCCTCATCCCATCC 58.856 55.000 0.00 0.00 0.00 3.51
270 271 0.044702 TCACACCCTCATCCCATCCT 59.955 55.000 0.00 0.00 0.00 3.24
271 272 0.182061 CACACCCTCATCCCATCCTG 59.818 60.000 0.00 0.00 0.00 3.86
272 273 0.990282 ACACCCTCATCCCATCCTGG 60.990 60.000 0.00 0.00 37.25 4.45
273 274 0.695462 CACCCTCATCCCATCCTGGA 60.695 60.000 0.00 0.00 40.96 3.86
274 275 0.401105 ACCCTCATCCCATCCTGGAG 60.401 60.000 1.52 0.00 40.96 3.86
275 276 0.401105 CCCTCATCCCATCCTGGAGT 60.401 60.000 1.52 0.00 40.96 3.85
276 277 1.132721 CCCTCATCCCATCCTGGAGTA 60.133 57.143 1.52 0.00 40.96 2.59
277 278 2.694397 CCTCATCCCATCCTGGAGTAA 58.306 52.381 1.52 0.00 40.96 2.24
278 279 3.048600 CCTCATCCCATCCTGGAGTAAA 58.951 50.000 1.52 0.00 40.96 2.01
279 280 3.459598 CCTCATCCCATCCTGGAGTAAAA 59.540 47.826 1.52 0.00 40.96 1.52
280 281 4.079787 CCTCATCCCATCCTGGAGTAAAAA 60.080 45.833 1.52 0.00 40.96 1.94
281 282 5.399497 CCTCATCCCATCCTGGAGTAAAAAT 60.399 44.000 1.52 0.00 40.96 1.82
282 283 6.183361 CCTCATCCCATCCTGGAGTAAAAATA 60.183 42.308 1.52 0.00 40.96 1.40
283 284 7.406620 TCATCCCATCCTGGAGTAAAAATAT 57.593 36.000 1.52 0.00 40.96 1.28
284 285 7.825709 TCATCCCATCCTGGAGTAAAAATATT 58.174 34.615 1.52 0.00 40.96 1.28
285 286 8.288812 TCATCCCATCCTGGAGTAAAAATATTT 58.711 33.333 1.52 0.00 40.96 1.40
286 287 7.896383 TCCCATCCTGGAGTAAAAATATTTG 57.104 36.000 1.52 0.00 40.96 2.32
287 288 6.323739 TCCCATCCTGGAGTAAAAATATTTGC 59.676 38.462 1.52 0.00 40.96 3.68
288 289 6.098124 CCCATCCTGGAGTAAAAATATTTGCA 59.902 38.462 1.52 0.00 40.96 4.08
289 290 7.202029 CCCATCCTGGAGTAAAAATATTTGCAT 60.202 37.037 1.52 0.00 40.96 3.96
290 291 7.869429 CCATCCTGGAGTAAAAATATTTGCATC 59.131 37.037 1.52 0.00 40.96 3.91
291 292 8.636213 CATCCTGGAGTAAAAATATTTGCATCT 58.364 33.333 1.52 0.00 34.02 2.90
292 293 9.866655 ATCCTGGAGTAAAAATATTTGCATCTA 57.133 29.630 1.52 0.00 34.02 1.98
293 294 9.120538 TCCTGGAGTAAAAATATTTGCATCTAC 57.879 33.333 0.39 0.73 34.02 2.59
294 295 8.902806 CCTGGAGTAAAAATATTTGCATCTACA 58.097 33.333 0.39 4.94 34.02 2.74
305 306 9.976511 AATATTTGCATCTACATCATCTTTTGG 57.023 29.630 0.00 0.00 0.00 3.28
306 307 6.839124 TTTGCATCTACATCATCTTTTGGT 57.161 33.333 0.00 0.00 0.00 3.67
307 308 5.823209 TGCATCTACATCATCTTTTGGTG 57.177 39.130 0.00 0.00 42.55 4.17
308 309 4.096833 TGCATCTACATCATCTTTTGGTGC 59.903 41.667 0.00 0.00 40.35 5.01
309 310 4.096833 GCATCTACATCATCTTTTGGTGCA 59.903 41.667 0.00 0.00 40.35 4.57
310 311 5.393352 GCATCTACATCATCTTTTGGTGCAA 60.393 40.000 0.00 0.00 40.35 4.08
311 312 5.627499 TCTACATCATCTTTTGGTGCAAC 57.373 39.130 0.00 0.00 40.35 4.17
312 313 3.287312 ACATCATCTTTTGGTGCAACG 57.713 42.857 0.00 0.00 40.35 4.10
313 314 2.622942 ACATCATCTTTTGGTGCAACGT 59.377 40.909 0.00 0.00 40.35 3.99
314 315 3.068024 ACATCATCTTTTGGTGCAACGTT 59.932 39.130 0.00 0.00 40.35 3.99
315 316 3.791973 TCATCTTTTGGTGCAACGTTT 57.208 38.095 0.00 0.00 38.12 3.60
316 317 4.116747 TCATCTTTTGGTGCAACGTTTT 57.883 36.364 0.00 0.00 38.12 2.43
317 318 4.499183 TCATCTTTTGGTGCAACGTTTTT 58.501 34.783 0.00 0.00 38.12 1.94
318 319 4.328440 TCATCTTTTGGTGCAACGTTTTTG 59.672 37.500 0.00 0.00 38.12 2.44
319 320 2.413453 TCTTTTGGTGCAACGTTTTTGC 59.587 40.909 0.00 0.00 45.11 3.68
320 321 1.079503 TTTGGTGCAACGTTTTTGCC 58.920 45.000 8.16 4.89 44.32 4.52
321 322 0.247736 TTGGTGCAACGTTTTTGCCT 59.752 45.000 8.16 0.00 44.32 4.75
322 323 0.179124 TGGTGCAACGTTTTTGCCTC 60.179 50.000 8.16 2.17 44.32 4.70
323 324 0.102300 GGTGCAACGTTTTTGCCTCT 59.898 50.000 8.16 0.00 44.32 3.69
324 325 1.477105 GTGCAACGTTTTTGCCTCTC 58.523 50.000 8.16 0.00 44.32 3.20
325 326 0.028770 TGCAACGTTTTTGCCTCTCG 59.971 50.000 8.16 0.00 44.32 4.04
326 327 0.028902 GCAACGTTTTTGCCTCTCGT 59.971 50.000 0.00 0.00 39.38 4.18
327 328 1.741993 CAACGTTTTTGCCTCTCGTG 58.258 50.000 0.00 0.00 35.00 4.35
328 329 1.329292 CAACGTTTTTGCCTCTCGTGA 59.671 47.619 0.00 0.00 35.00 4.35
329 330 1.878953 ACGTTTTTGCCTCTCGTGAT 58.121 45.000 0.00 0.00 33.55 3.06
330 331 1.531149 ACGTTTTTGCCTCTCGTGATG 59.469 47.619 0.00 0.00 33.55 3.07
331 332 1.531149 CGTTTTTGCCTCTCGTGATGT 59.469 47.619 0.00 0.00 0.00 3.06
332 333 2.734606 CGTTTTTGCCTCTCGTGATGTA 59.265 45.455 0.00 0.00 0.00 2.29
333 334 3.181530 CGTTTTTGCCTCTCGTGATGTAG 60.182 47.826 0.00 0.00 0.00 2.74
334 335 3.953712 TTTTGCCTCTCGTGATGTAGA 57.046 42.857 0.00 0.00 0.00 2.59
335 336 3.510388 TTTGCCTCTCGTGATGTAGAG 57.490 47.619 0.00 0.00 39.19 2.43
336 337 2.420058 TGCCTCTCGTGATGTAGAGA 57.580 50.000 0.00 0.00 41.51 3.10
342 343 3.939066 TCTCGTGATGTAGAGAGTGACA 58.061 45.455 0.00 0.00 38.46 3.58
343 344 3.685272 TCTCGTGATGTAGAGAGTGACAC 59.315 47.826 0.00 0.00 38.46 3.67
344 345 2.747989 TCGTGATGTAGAGAGTGACACC 59.252 50.000 0.84 0.00 0.00 4.16
345 346 2.488153 CGTGATGTAGAGAGTGACACCA 59.512 50.000 0.84 0.00 0.00 4.17
346 347 3.129462 CGTGATGTAGAGAGTGACACCAT 59.871 47.826 0.84 0.00 0.00 3.55
347 348 4.677584 GTGATGTAGAGAGTGACACCATC 58.322 47.826 0.84 7.52 0.00 3.51
348 349 3.701542 TGATGTAGAGAGTGACACCATCC 59.298 47.826 14.03 0.00 0.00 3.51
349 350 3.458044 TGTAGAGAGTGACACCATCCT 57.542 47.619 0.84 0.00 0.00 3.24
350 351 4.586306 TGTAGAGAGTGACACCATCCTA 57.414 45.455 0.84 0.00 0.00 2.94
351 352 5.130705 TGTAGAGAGTGACACCATCCTAT 57.869 43.478 0.84 0.00 0.00 2.57
352 353 5.519808 TGTAGAGAGTGACACCATCCTATT 58.480 41.667 0.84 0.00 0.00 1.73
353 354 5.958380 TGTAGAGAGTGACACCATCCTATTT 59.042 40.000 0.84 0.00 0.00 1.40
354 355 5.350504 AGAGAGTGACACCATCCTATTTG 57.649 43.478 0.84 0.00 0.00 2.32
355 356 3.873952 GAGAGTGACACCATCCTATTTGC 59.126 47.826 0.84 0.00 0.00 3.68
356 357 3.264193 AGAGTGACACCATCCTATTTGCA 59.736 43.478 0.84 0.00 0.00 4.08
357 358 4.080129 AGAGTGACACCATCCTATTTGCAT 60.080 41.667 0.84 0.00 0.00 3.96
358 359 4.202441 AGTGACACCATCCTATTTGCATC 58.798 43.478 0.84 0.00 0.00 3.91
359 360 3.947196 GTGACACCATCCTATTTGCATCA 59.053 43.478 0.00 0.00 0.00 3.07
360 361 4.581824 GTGACACCATCCTATTTGCATCAT 59.418 41.667 0.00 0.00 0.00 2.45
361 362 4.823442 TGACACCATCCTATTTGCATCATC 59.177 41.667 0.00 0.00 0.00 2.92
362 363 5.057843 ACACCATCCTATTTGCATCATCT 57.942 39.130 0.00 0.00 0.00 2.90
363 364 5.452255 ACACCATCCTATTTGCATCATCTT 58.548 37.500 0.00 0.00 0.00 2.40
364 365 5.895534 ACACCATCCTATTTGCATCATCTTT 59.104 36.000 0.00 0.00 0.00 2.52
365 366 6.381994 ACACCATCCTATTTGCATCATCTTTT 59.618 34.615 0.00 0.00 0.00 2.27
366 367 7.093201 ACACCATCCTATTTGCATCATCTTTTT 60.093 33.333 0.00 0.00 0.00 1.94
415 416 9.836864 AATTTTATTTCTTTTGAGACAAGGCTT 57.163 25.926 0.00 0.00 0.00 4.35
416 417 8.871686 TTTTATTTCTTTTGAGACAAGGCTTC 57.128 30.769 0.00 0.00 0.00 3.86
417 418 4.918810 TTTCTTTTGAGACAAGGCTTCC 57.081 40.909 0.00 0.00 0.00 3.46
418 419 2.494059 TCTTTTGAGACAAGGCTTCCG 58.506 47.619 0.00 0.00 0.00 4.30
419 420 2.158813 TCTTTTGAGACAAGGCTTCCGT 60.159 45.455 0.00 0.00 0.00 4.69
420 421 2.341846 TTTGAGACAAGGCTTCCGTT 57.658 45.000 0.00 0.00 0.00 4.44
421 422 3.478857 TTTGAGACAAGGCTTCCGTTA 57.521 42.857 0.00 0.00 0.00 3.18
422 423 2.450609 TGAGACAAGGCTTCCGTTAC 57.549 50.000 0.00 0.00 0.00 2.50
423 424 1.689813 TGAGACAAGGCTTCCGTTACA 59.310 47.619 0.00 0.00 0.00 2.41
424 425 2.103432 TGAGACAAGGCTTCCGTTACAA 59.897 45.455 0.00 0.00 0.00 2.41
425 426 3.135994 GAGACAAGGCTTCCGTTACAAA 58.864 45.455 0.00 0.00 0.00 2.83
426 427 3.547746 AGACAAGGCTTCCGTTACAAAA 58.452 40.909 0.00 0.00 0.00 2.44
427 428 3.314357 AGACAAGGCTTCCGTTACAAAAC 59.686 43.478 0.00 0.00 0.00 2.43
428 429 3.284617 ACAAGGCTTCCGTTACAAAACT 58.715 40.909 0.00 0.00 33.15 2.66
429 430 4.453751 ACAAGGCTTCCGTTACAAAACTA 58.546 39.130 0.00 0.00 33.15 2.24
430 431 4.514066 ACAAGGCTTCCGTTACAAAACTAG 59.486 41.667 0.00 0.00 33.15 2.57
431 432 4.612264 AGGCTTCCGTTACAAAACTAGA 57.388 40.909 0.00 0.00 33.15 2.43
432 433 5.161943 AGGCTTCCGTTACAAAACTAGAT 57.838 39.130 0.00 0.00 33.15 1.98
433 434 5.176592 AGGCTTCCGTTACAAAACTAGATC 58.823 41.667 0.00 0.00 33.15 2.75
434 435 4.032558 GGCTTCCGTTACAAAACTAGATCG 59.967 45.833 0.00 0.00 33.15 3.69
435 436 4.032558 GCTTCCGTTACAAAACTAGATCGG 59.967 45.833 0.00 0.00 38.36 4.18
436 437 4.114058 TCCGTTACAAAACTAGATCGGG 57.886 45.455 0.00 0.00 37.72 5.14
437 438 3.511146 TCCGTTACAAAACTAGATCGGGT 59.489 43.478 0.00 0.00 37.72 5.28
438 439 3.861689 CCGTTACAAAACTAGATCGGGTC 59.138 47.826 0.00 0.00 33.15 4.46
439 440 4.381292 CCGTTACAAAACTAGATCGGGTCT 60.381 45.833 0.00 0.00 41.11 3.85
440 441 4.561606 CGTTACAAAACTAGATCGGGTCTG 59.438 45.833 0.00 0.00 37.83 3.51
441 442 3.611766 ACAAAACTAGATCGGGTCTGG 57.388 47.619 0.00 0.00 40.95 3.86
445 446 2.830651 ACTAGATCGGGTCTGGTTCT 57.169 50.000 0.88 0.00 45.30 3.01
446 447 2.379972 ACTAGATCGGGTCTGGTTCTG 58.620 52.381 0.88 0.00 45.30 3.02
447 448 1.683917 CTAGATCGGGTCTGGTTCTGG 59.316 57.143 0.00 0.00 37.83 3.86
448 449 1.153349 GATCGGGTCTGGTTCTGGC 60.153 63.158 0.00 0.00 0.00 4.85
449 450 2.907897 GATCGGGTCTGGTTCTGGCG 62.908 65.000 0.00 0.00 0.00 5.69
451 452 4.329545 GGGTCTGGTTCTGGCGCA 62.330 66.667 10.83 0.00 0.00 6.09
452 453 3.050275 GGTCTGGTTCTGGCGCAC 61.050 66.667 10.83 0.00 0.00 5.34
453 454 3.414700 GTCTGGTTCTGGCGCACG 61.415 66.667 10.83 0.00 0.00 5.34
454 455 4.680237 TCTGGTTCTGGCGCACGG 62.680 66.667 10.83 3.76 0.00 4.94
474 475 4.083862 GGCCCACCTCACCGTCTC 62.084 72.222 0.00 0.00 0.00 3.36
475 476 4.436998 GCCCACCTCACCGTCTCG 62.437 72.222 0.00 0.00 0.00 4.04
476 477 2.989824 CCCACCTCACCGTCTCGT 60.990 66.667 0.00 0.00 0.00 4.18
477 478 2.258591 CCACCTCACCGTCTCGTG 59.741 66.667 0.00 0.00 34.93 4.35
478 479 2.258591 CACCTCACCGTCTCGTGG 59.741 66.667 0.00 0.00 34.36 4.94
479 480 2.989824 ACCTCACCGTCTCGTGGG 60.990 66.667 0.00 0.00 34.36 4.61
481 482 4.436998 CTCACCGTCTCGTGGGGC 62.437 72.222 0.00 0.00 34.36 5.80
485 486 4.436998 CCGTCTCGTGGGGCACTC 62.437 72.222 0.00 0.00 31.34 3.51
486 487 4.436998 CGTCTCGTGGGGCACTCC 62.437 72.222 0.00 0.00 31.34 3.85
487 488 2.997897 GTCTCGTGGGGCACTCCT 60.998 66.667 0.00 0.00 35.33 3.69
488 489 2.203788 TCTCGTGGGGCACTCCTT 60.204 61.111 0.00 0.00 35.33 3.36
489 490 2.266055 CTCGTGGGGCACTCCTTC 59.734 66.667 0.00 0.00 35.33 3.46
490 491 3.649277 CTCGTGGGGCACTCCTTCG 62.649 68.421 0.00 0.00 35.33 3.79
491 492 4.760047 CGTGGGGCACTCCTTCGG 62.760 72.222 0.00 0.00 35.33 4.30
492 493 3.637273 GTGGGGCACTCCTTCGGT 61.637 66.667 0.00 0.00 35.33 4.69
493 494 2.852075 TGGGGCACTCCTTCGGTT 60.852 61.111 0.00 0.00 35.33 4.44
494 495 2.046217 GGGGCACTCCTTCGGTTC 60.046 66.667 0.00 0.00 35.33 3.62
495 496 2.434359 GGGCACTCCTTCGGTTCG 60.434 66.667 0.00 0.00 0.00 3.95
496 497 2.434359 GGCACTCCTTCGGTTCGG 60.434 66.667 0.00 0.00 0.00 4.30
497 498 2.434359 GCACTCCTTCGGTTCGGG 60.434 66.667 0.00 0.00 0.00 5.14
498 499 3.057337 CACTCCTTCGGTTCGGGT 58.943 61.111 0.00 0.00 0.00 5.28
499 500 1.374252 CACTCCTTCGGTTCGGGTG 60.374 63.158 0.00 0.00 0.00 4.61
500 501 1.835712 ACTCCTTCGGTTCGGGTGT 60.836 57.895 0.00 0.00 0.00 4.16
501 502 0.540365 ACTCCTTCGGTTCGGGTGTA 60.540 55.000 0.00 0.00 0.00 2.90
502 503 0.604578 CTCCTTCGGTTCGGGTGTAA 59.395 55.000 0.00 0.00 0.00 2.41
503 504 1.001181 CTCCTTCGGTTCGGGTGTAAA 59.999 52.381 0.00 0.00 0.00 2.01
504 505 1.150827 CCTTCGGTTCGGGTGTAAAC 58.849 55.000 0.00 0.00 0.00 2.01
505 506 1.540797 CCTTCGGTTCGGGTGTAAACA 60.541 52.381 0.00 0.00 0.00 2.83
506 507 2.419667 CTTCGGTTCGGGTGTAAACAT 58.580 47.619 0.00 0.00 0.00 2.71
507 508 3.587923 CTTCGGTTCGGGTGTAAACATA 58.412 45.455 0.00 0.00 0.00 2.29
508 509 3.674528 TCGGTTCGGGTGTAAACATAA 57.325 42.857 0.00 0.00 0.00 1.90
509 510 3.324993 TCGGTTCGGGTGTAAACATAAC 58.675 45.455 0.00 0.00 0.00 1.89
510 511 2.092524 CGGTTCGGGTGTAAACATAACG 59.907 50.000 0.00 0.00 0.00 3.18
511 512 2.416202 GGTTCGGGTGTAAACATAACGG 59.584 50.000 0.00 0.00 0.00 4.44
512 513 3.066380 GTTCGGGTGTAAACATAACGGT 58.934 45.455 0.00 0.00 0.00 4.83
513 514 3.399440 TCGGGTGTAAACATAACGGTT 57.601 42.857 0.00 0.00 0.00 4.44
514 515 3.737850 TCGGGTGTAAACATAACGGTTT 58.262 40.909 0.00 0.00 43.08 3.27
515 516 3.745458 TCGGGTGTAAACATAACGGTTTC 59.255 43.478 0.00 0.00 41.07 2.78
516 517 3.423384 CGGGTGTAAACATAACGGTTTCG 60.423 47.826 0.00 0.00 41.07 3.46
517 518 3.481839 GGTGTAAACATAACGGTTTCGC 58.518 45.455 0.00 0.00 41.07 4.70
518 519 3.481839 GTGTAAACATAACGGTTTCGCC 58.518 45.455 0.00 0.00 41.07 5.54
519 520 2.483491 TGTAAACATAACGGTTTCGCCC 59.517 45.455 0.00 0.00 41.07 6.13
520 521 1.900245 AAACATAACGGTTTCGCCCT 58.100 45.000 0.00 0.00 36.26 5.19
521 522 1.161843 AACATAACGGTTTCGCCCTG 58.838 50.000 0.00 0.00 40.63 4.45
522 523 0.035739 ACATAACGGTTTCGCCCTGT 59.964 50.000 0.00 0.00 40.63 4.00
523 524 1.275856 ACATAACGGTTTCGCCCTGTA 59.724 47.619 0.00 0.00 40.63 2.74
524 525 1.931172 CATAACGGTTTCGCCCTGTAG 59.069 52.381 0.00 0.00 40.63 2.74
525 526 0.968405 TAACGGTTTCGCCCTGTAGT 59.032 50.000 0.00 0.00 40.63 2.73
526 527 0.107268 AACGGTTTCGCCCTGTAGTT 59.893 50.000 0.00 0.00 40.63 2.24
527 528 0.107268 ACGGTTTCGCCCTGTAGTTT 59.893 50.000 0.00 0.00 40.63 2.66
528 529 0.794473 CGGTTTCGCCCTGTAGTTTC 59.206 55.000 0.00 0.00 0.00 2.78
529 530 1.874739 CGGTTTCGCCCTGTAGTTTCA 60.875 52.381 0.00 0.00 0.00 2.69
530 531 2.433436 GGTTTCGCCCTGTAGTTTCAT 58.567 47.619 0.00 0.00 0.00 2.57
531 532 2.418976 GGTTTCGCCCTGTAGTTTCATC 59.581 50.000 0.00 0.00 0.00 2.92
532 533 2.396590 TTCGCCCTGTAGTTTCATCC 57.603 50.000 0.00 0.00 0.00 3.51
533 534 0.539986 TCGCCCTGTAGTTTCATCCC 59.460 55.000 0.00 0.00 0.00 3.85
534 535 0.810031 CGCCCTGTAGTTTCATCCCG 60.810 60.000 0.00 0.00 0.00 5.14
535 536 0.252197 GCCCTGTAGTTTCATCCCGT 59.748 55.000 0.00 0.00 0.00 5.28
536 537 1.742750 GCCCTGTAGTTTCATCCCGTC 60.743 57.143 0.00 0.00 0.00 4.79
537 538 1.831736 CCCTGTAGTTTCATCCCGTCT 59.168 52.381 0.00 0.00 0.00 4.18
538 539 2.159085 CCCTGTAGTTTCATCCCGTCTC 60.159 54.545 0.00 0.00 0.00 3.36
539 540 2.479730 CCTGTAGTTTCATCCCGTCTCG 60.480 54.545 0.00 0.00 0.00 4.04
540 541 2.422479 CTGTAGTTTCATCCCGTCTCGA 59.578 50.000 0.00 0.00 0.00 4.04
541 542 2.821378 TGTAGTTTCATCCCGTCTCGAA 59.179 45.455 0.00 0.00 0.00 3.71
542 543 2.365408 AGTTTCATCCCGTCTCGAAC 57.635 50.000 0.00 0.00 0.00 3.95
543 544 1.616865 AGTTTCATCCCGTCTCGAACA 59.383 47.619 0.00 0.00 0.00 3.18
544 545 1.993370 GTTTCATCCCGTCTCGAACAG 59.007 52.381 0.00 0.00 0.00 3.16
545 546 0.530744 TTCATCCCGTCTCGAACAGG 59.469 55.000 0.00 0.00 0.00 4.00
546 547 1.519455 CATCCCGTCTCGAACAGGC 60.519 63.158 0.00 0.00 0.00 4.85
547 548 2.722201 ATCCCGTCTCGAACAGGCC 61.722 63.158 0.00 0.00 0.00 5.19
548 549 4.796231 CCCGTCTCGAACAGGCCG 62.796 72.222 0.00 0.00 0.00 6.13
549 550 3.744719 CCGTCTCGAACAGGCCGA 61.745 66.667 0.00 0.00 34.61 5.54
550 551 2.257371 CGTCTCGAACAGGCCGAA 59.743 61.111 0.00 0.00 35.48 4.30
551 552 1.153823 CGTCTCGAACAGGCCGAAT 60.154 57.895 0.00 0.00 35.48 3.34
552 553 1.140407 CGTCTCGAACAGGCCGAATC 61.140 60.000 0.00 0.00 35.48 2.52
553 554 1.138883 TCTCGAACAGGCCGAATCG 59.861 57.895 17.47 17.47 35.48 3.34
554 555 1.153823 CTCGAACAGGCCGAATCGT 60.154 57.895 21.03 3.53 36.70 3.73
555 556 0.736325 CTCGAACAGGCCGAATCGTT 60.736 55.000 21.03 10.92 36.70 3.85
556 557 0.734942 TCGAACAGGCCGAATCGTTC 60.735 55.000 21.03 16.54 36.70 3.95
568 569 3.105149 GAATCGTTCGTGCCTTTCTTC 57.895 47.619 0.00 0.00 0.00 2.87
569 570 1.439679 ATCGTTCGTGCCTTTCTTCC 58.560 50.000 0.00 0.00 0.00 3.46
570 571 0.601841 TCGTTCGTGCCTTTCTTCCC 60.602 55.000 0.00 0.00 0.00 3.97
571 572 1.574702 CGTTCGTGCCTTTCTTCCCC 61.575 60.000 0.00 0.00 0.00 4.81
572 573 1.302192 TTCGTGCCTTTCTTCCCCG 60.302 57.895 0.00 0.00 0.00 5.73
573 574 2.741486 TTCGTGCCTTTCTTCCCCGG 62.741 60.000 0.00 0.00 0.00 5.73
574 575 2.754375 GTGCCTTTCTTCCCCGGA 59.246 61.111 0.73 0.00 0.00 5.14
575 576 1.377333 GTGCCTTTCTTCCCCGGAG 60.377 63.158 0.73 0.00 0.00 4.63
576 577 2.438614 GCCTTTCTTCCCCGGAGC 60.439 66.667 0.73 0.00 0.00 4.70
577 578 2.972819 GCCTTTCTTCCCCGGAGCT 61.973 63.158 0.73 0.00 0.00 4.09
578 579 1.222113 CCTTTCTTCCCCGGAGCTC 59.778 63.158 0.73 4.71 0.00 4.09
579 580 1.153549 CTTTCTTCCCCGGAGCTCG 60.154 63.158 0.73 3.03 38.88 5.03
589 590 2.384203 CGGAGCTCGGAACAAATCC 58.616 57.895 15.82 0.00 45.57 3.01
590 591 0.108138 CGGAGCTCGGAACAAATCCT 60.108 55.000 15.82 0.00 46.98 3.24
591 592 1.657822 GGAGCTCGGAACAAATCCTC 58.342 55.000 7.83 0.00 46.98 3.71
592 593 1.657822 GAGCTCGGAACAAATCCTCC 58.342 55.000 0.00 0.00 46.98 4.30
593 594 1.208293 GAGCTCGGAACAAATCCTCCT 59.792 52.381 0.00 0.00 46.98 3.69
594 595 1.208293 AGCTCGGAACAAATCCTCCTC 59.792 52.381 0.00 0.00 46.98 3.71
595 596 1.927895 CTCGGAACAAATCCTCCTCG 58.072 55.000 0.00 0.00 46.98 4.63
596 597 0.108329 TCGGAACAAATCCTCCTCGC 60.108 55.000 0.00 0.00 46.98 5.03
597 598 1.090052 CGGAACAAATCCTCCTCGCC 61.090 60.000 0.00 0.00 46.98 5.54
598 599 1.090052 GGAACAAATCCTCCTCGCCG 61.090 60.000 0.00 0.00 45.56 6.46
599 600 1.078426 AACAAATCCTCCTCGCCGG 60.078 57.895 0.00 0.00 0.00 6.13
600 601 2.897350 CAAATCCTCCTCGCCGGC 60.897 66.667 19.07 19.07 0.00 6.13
601 602 4.530857 AAATCCTCCTCGCCGGCG 62.531 66.667 42.13 42.13 41.35 6.46
828 829 2.506962 TTCCGTTCTGCCGTTGGT 59.493 55.556 0.00 0.00 0.00 3.67
829 830 1.747145 TTCCGTTCTGCCGTTGGTA 59.253 52.632 0.00 0.00 0.00 3.25
830 831 0.106335 TTCCGTTCTGCCGTTGGTAA 59.894 50.000 0.00 0.00 0.00 2.85
831 832 0.320073 TCCGTTCTGCCGTTGGTAAG 60.320 55.000 0.00 0.00 0.00 2.34
832 833 1.495951 CGTTCTGCCGTTGGTAAGC 59.504 57.895 0.00 0.00 0.00 3.09
833 834 1.225376 CGTTCTGCCGTTGGTAAGCA 61.225 55.000 0.00 0.00 34.79 3.91
834 835 0.948678 GTTCTGCCGTTGGTAAGCAA 59.051 50.000 0.00 0.00 35.79 3.91
835 836 1.335496 GTTCTGCCGTTGGTAAGCAAA 59.665 47.619 0.00 0.00 35.79 3.68
836 837 0.948678 TCTGCCGTTGGTAAGCAAAC 59.051 50.000 0.00 0.00 35.79 2.93
837 838 0.039527 CTGCCGTTGGTAAGCAAACC 60.040 55.000 0.65 0.65 40.19 3.27
838 839 1.287815 GCCGTTGGTAAGCAAACCC 59.712 57.895 5.15 0.00 38.90 4.11
839 840 1.176619 GCCGTTGGTAAGCAAACCCT 61.177 55.000 5.15 0.00 38.90 4.34
840 841 1.883209 GCCGTTGGTAAGCAAACCCTA 60.883 52.381 5.15 0.00 38.90 3.53
841 842 2.081462 CCGTTGGTAAGCAAACCCTAG 58.919 52.381 5.15 0.00 38.90 3.02
842 843 1.467342 CGTTGGTAAGCAAACCCTAGC 59.533 52.381 5.15 0.00 38.90 3.42
843 844 2.791655 GTTGGTAAGCAAACCCTAGCT 58.208 47.619 5.15 0.00 44.31 3.32
844 845 2.747989 GTTGGTAAGCAAACCCTAGCTC 59.252 50.000 0.00 0.00 40.90 4.09
845 846 1.066430 TGGTAAGCAAACCCTAGCTCG 60.066 52.381 0.00 0.00 40.90 5.03
846 847 1.206371 GGTAAGCAAACCCTAGCTCGA 59.794 52.381 0.00 0.00 40.90 4.04
847 848 2.158943 GGTAAGCAAACCCTAGCTCGAT 60.159 50.000 0.00 0.00 40.90 3.59
848 849 2.789409 AAGCAAACCCTAGCTCGATT 57.211 45.000 0.00 0.00 40.90 3.34
849 850 2.317530 AGCAAACCCTAGCTCGATTC 57.682 50.000 0.00 0.00 36.00 2.52
850 851 1.134371 AGCAAACCCTAGCTCGATTCC 60.134 52.381 0.00 0.00 36.00 3.01
878 879 1.500844 CTCTGCTTCTGCCTTTGCG 59.499 57.895 0.00 0.00 41.78 4.85
879 880 2.126580 CTGCTTCTGCCTTTGCGC 60.127 61.111 0.00 0.00 41.78 6.09
880 881 3.621892 CTGCTTCTGCCTTTGCGCC 62.622 63.158 4.18 0.00 41.78 6.53
932 933 1.732259 GCATATCGGCCGATCGATTTT 59.268 47.619 42.11 21.86 46.23 1.82
1055 1059 3.314951 GGAGGAGGCTCCAAGGAC 58.685 66.667 33.86 18.37 42.86 3.85
1058 1062 3.394836 GGAGGCTCCAAGGACGCT 61.395 66.667 28.55 0.00 36.28 5.07
1243 1247 6.017400 TCTTTCTGAATGAATTGGAAGTGC 57.983 37.500 3.74 0.00 34.24 4.40
1245 1249 2.749076 TCTGAATGAATTGGAAGTGCCG 59.251 45.455 0.00 0.00 40.66 5.69
1246 1250 2.489329 CTGAATGAATTGGAAGTGCCGT 59.511 45.455 0.00 0.00 40.66 5.68
1247 1251 2.890311 TGAATGAATTGGAAGTGCCGTT 59.110 40.909 0.00 0.00 40.66 4.44
1248 1252 3.320541 TGAATGAATTGGAAGTGCCGTTT 59.679 39.130 0.00 0.00 40.66 3.60
1249 1253 2.791383 TGAATTGGAAGTGCCGTTTG 57.209 45.000 0.00 0.00 40.66 2.93
1250 1254 2.028130 TGAATTGGAAGTGCCGTTTGT 58.972 42.857 0.00 0.00 40.66 2.83
1251 1255 2.428890 TGAATTGGAAGTGCCGTTTGTT 59.571 40.909 0.00 0.00 40.66 2.83
1252 1256 3.118956 TGAATTGGAAGTGCCGTTTGTTT 60.119 39.130 0.00 0.00 40.66 2.83
1253 1257 3.535280 ATTGGAAGTGCCGTTTGTTTT 57.465 38.095 0.00 0.00 40.66 2.43
1254 1258 4.657436 ATTGGAAGTGCCGTTTGTTTTA 57.343 36.364 0.00 0.00 40.66 1.52
1255 1259 4.657436 TTGGAAGTGCCGTTTGTTTTAT 57.343 36.364 0.00 0.00 40.66 1.40
1256 1260 3.971150 TGGAAGTGCCGTTTGTTTTATG 58.029 40.909 0.00 0.00 40.66 1.90
1257 1261 2.729360 GGAAGTGCCGTTTGTTTTATGC 59.271 45.455 0.00 0.00 0.00 3.14
1258 1262 2.432206 AGTGCCGTTTGTTTTATGCC 57.568 45.000 0.00 0.00 0.00 4.40
1308 1312 4.385146 TGATGTCGCGTATCGTTTGTTTTA 59.615 37.500 5.77 0.00 39.67 1.52
1324 1328 7.096271 CGTTTGTTTTATAGAAACATGCAAGCA 60.096 33.333 5.30 0.00 39.34 3.91
1386 1390 2.992543 GTGTCTTCAAGCACTCTAGCAG 59.007 50.000 5.11 0.00 36.85 4.24
1404 1408 0.036010 AGAAGATGACACAAGCGGGG 60.036 55.000 0.00 0.00 0.00 5.73
1426 1430 2.495084 GGCGGCTAGGAAAAAGATAGG 58.505 52.381 0.00 0.00 0.00 2.57
1567 1571 0.401738 ACACTTGATGAGGGTGGTGG 59.598 55.000 0.00 0.00 41.60 4.61
1708 1715 4.519730 TGTGTGCATTCATTTGTCATCAGA 59.480 37.500 0.00 0.00 0.00 3.27
1915 1923 1.274167 TCCGACACGCCTTTAATGTCT 59.726 47.619 5.00 0.00 40.51 3.41
1918 1926 1.130561 GACACGCCTTTAATGTCTGCC 59.869 52.381 0.00 0.00 39.72 4.85
1930 1938 1.839424 TGTCTGCCGAGAAGATGAGA 58.161 50.000 0.00 0.00 0.00 3.27
2036 2044 9.399403 CTTCTAAATTGTTTACTTTCTCTTGCC 57.601 33.333 0.00 0.00 0.00 4.52
2217 2236 7.942341 TCATGTCTGTTTGGGTCTTTAGTAATT 59.058 33.333 0.00 0.00 0.00 1.40
2267 2286 3.542969 AACCCACTTAAGCCTCCAATT 57.457 42.857 1.29 0.00 0.00 2.32
2268 2287 2.807676 ACCCACTTAAGCCTCCAATTG 58.192 47.619 1.29 0.00 0.00 2.32
2325 2346 3.954258 CCCTTAGATTTAGGCCCAGTTTG 59.046 47.826 0.00 0.00 0.00 2.93
2407 2504 2.009681 ACCCTTTGGATTGTTGGACC 57.990 50.000 0.00 0.00 34.81 4.46
2794 4641 0.322816 ACAAGGTTGGCGAGCATGAT 60.323 50.000 15.40 0.00 0.00 2.45
2889 4736 0.250727 CCTCCCTTTGAAGTCGGCAA 60.251 55.000 0.00 0.00 0.00 4.52
2977 4824 2.601666 TCTGCAGAGAGCCCACGT 60.602 61.111 13.74 0.00 44.83 4.49
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.944554 AGAGTTGGAGGTTTTTCATGATCTAAA 59.055 33.333 0.00 0.00 0.00 1.85
1 2 7.461749 AGAGTTGGAGGTTTTTCATGATCTAA 58.538 34.615 0.00 0.00 0.00 2.10
2 3 7.020827 AGAGTTGGAGGTTTTTCATGATCTA 57.979 36.000 0.00 0.00 0.00 1.98
3 4 5.885465 AGAGTTGGAGGTTTTTCATGATCT 58.115 37.500 0.00 0.00 0.00 2.75
4 5 7.174946 TGTTAGAGTTGGAGGTTTTTCATGATC 59.825 37.037 0.00 0.00 0.00 2.92
5 6 7.004086 TGTTAGAGTTGGAGGTTTTTCATGAT 58.996 34.615 0.00 0.00 0.00 2.45
6 7 6.361433 TGTTAGAGTTGGAGGTTTTTCATGA 58.639 36.000 0.00 0.00 0.00 3.07
7 8 6.633500 TGTTAGAGTTGGAGGTTTTTCATG 57.367 37.500 0.00 0.00 0.00 3.07
8 9 7.654022 TTTGTTAGAGTTGGAGGTTTTTCAT 57.346 32.000 0.00 0.00 0.00 2.57
9 10 7.340743 TCATTTGTTAGAGTTGGAGGTTTTTCA 59.659 33.333 0.00 0.00 0.00 2.69
10 11 7.712797 TCATTTGTTAGAGTTGGAGGTTTTTC 58.287 34.615 0.00 0.00 0.00 2.29
11 12 7.654022 TCATTTGTTAGAGTTGGAGGTTTTT 57.346 32.000 0.00 0.00 0.00 1.94
12 13 7.287696 ACATCATTTGTTAGAGTTGGAGGTTTT 59.712 33.333 0.00 0.00 33.74 2.43
13 14 6.777580 ACATCATTTGTTAGAGTTGGAGGTTT 59.222 34.615 0.00 0.00 33.74 3.27
14 15 6.306987 ACATCATTTGTTAGAGTTGGAGGTT 58.693 36.000 0.00 0.00 33.74 3.50
15 16 5.880901 ACATCATTTGTTAGAGTTGGAGGT 58.119 37.500 0.00 0.00 33.74 3.85
16 17 7.921786 TTACATCATTTGTTAGAGTTGGAGG 57.078 36.000 0.00 0.00 39.87 4.30
26 27 9.632807 GCAACACCTATTTTACATCATTTGTTA 57.367 29.630 0.00 0.00 39.87 2.41
27 28 8.147058 TGCAACACCTATTTTACATCATTTGTT 58.853 29.630 0.00 0.00 39.87 2.83
28 29 7.665690 TGCAACACCTATTTTACATCATTTGT 58.334 30.769 0.00 0.00 42.62 2.83
29 30 8.531622 TTGCAACACCTATTTTACATCATTTG 57.468 30.769 0.00 0.00 0.00 2.32
30 31 9.553064 TTTTGCAACACCTATTTTACATCATTT 57.447 25.926 0.00 0.00 0.00 2.32
31 32 9.723601 ATTTTGCAACACCTATTTTACATCATT 57.276 25.926 0.00 0.00 0.00 2.57
33 34 9.632807 GTATTTTGCAACACCTATTTTACATCA 57.367 29.630 0.00 0.00 0.00 3.07
34 35 9.632807 TGTATTTTGCAACACCTATTTTACATC 57.367 29.630 0.00 0.00 0.00 3.06
36 37 9.632807 GATGTATTTTGCAACACCTATTTTACA 57.367 29.630 0.00 0.00 0.00 2.41
37 38 9.632807 TGATGTATTTTGCAACACCTATTTTAC 57.367 29.630 0.00 0.00 0.00 2.01
38 39 9.632807 GTGATGTATTTTGCAACACCTATTTTA 57.367 29.630 0.00 0.00 34.80 1.52
39 40 8.147058 TGTGATGTATTTTGCAACACCTATTTT 58.853 29.630 0.00 0.00 38.37 1.82
40 41 7.665690 TGTGATGTATTTTGCAACACCTATTT 58.334 30.769 0.00 0.00 38.37 1.40
41 42 7.176515 TCTGTGATGTATTTTGCAACACCTATT 59.823 33.333 0.00 0.00 38.37 1.73
42 43 6.658816 TCTGTGATGTATTTTGCAACACCTAT 59.341 34.615 0.00 0.00 38.37 2.57
43 44 6.000840 TCTGTGATGTATTTTGCAACACCTA 58.999 36.000 0.00 0.00 38.37 3.08
44 45 4.826733 TCTGTGATGTATTTTGCAACACCT 59.173 37.500 0.00 0.00 38.37 4.00
45 46 5.119931 TCTGTGATGTATTTTGCAACACC 57.880 39.130 0.00 0.00 38.37 4.16
46 47 6.151691 ACATCTGTGATGTATTTTGCAACAC 58.848 36.000 10.98 2.62 39.20 3.32
47 48 6.207221 AGACATCTGTGATGTATTTTGCAACA 59.793 34.615 12.42 0.00 31.52 3.33
48 49 6.615088 AGACATCTGTGATGTATTTTGCAAC 58.385 36.000 12.42 0.00 31.52 4.17
49 50 6.822667 AGACATCTGTGATGTATTTTGCAA 57.177 33.333 12.42 0.00 31.52 4.08
50 51 6.656270 AGAAGACATCTGTGATGTATTTTGCA 59.344 34.615 17.72 0.00 36.88 4.08
51 52 7.081526 AGAAGACATCTGTGATGTATTTTGC 57.918 36.000 17.72 8.68 36.88 3.68
52 53 8.180267 GGAAGAAGACATCTGTGATGTATTTTG 58.820 37.037 17.72 0.00 38.79 2.44
53 54 7.065085 CGGAAGAAGACATCTGTGATGTATTTT 59.935 37.037 17.72 11.76 38.79 1.82
54 55 6.536582 CGGAAGAAGACATCTGTGATGTATTT 59.463 38.462 17.72 12.96 38.79 1.40
55 56 6.045318 CGGAAGAAGACATCTGTGATGTATT 58.955 40.000 16.98 16.98 38.79 1.89
56 57 5.360999 TCGGAAGAAGACATCTGTGATGTAT 59.639 40.000 12.42 7.49 38.79 2.29
57 58 4.705023 TCGGAAGAAGACATCTGTGATGTA 59.295 41.667 12.42 0.00 38.79 2.29
58 59 3.511540 TCGGAAGAAGACATCTGTGATGT 59.488 43.478 12.31 12.31 38.79 3.06
59 60 4.111198 CTCGGAAGAAGACATCTGTGATG 58.889 47.826 6.06 6.06 41.32 3.07
60 61 3.766591 ACTCGGAAGAAGACATCTGTGAT 59.233 43.478 0.00 0.00 41.32 3.06
61 62 3.057245 CACTCGGAAGAAGACATCTGTGA 60.057 47.826 0.00 0.00 41.32 3.58
62 63 3.249091 CACTCGGAAGAAGACATCTGTG 58.751 50.000 0.00 0.00 41.32 3.66
63 64 2.353208 GCACTCGGAAGAAGACATCTGT 60.353 50.000 0.00 0.00 41.32 3.41
64 65 2.266554 GCACTCGGAAGAAGACATCTG 58.733 52.381 0.00 0.00 41.32 2.90
65 66 1.205893 GGCACTCGGAAGAAGACATCT 59.794 52.381 0.00 0.00 41.32 2.90
66 67 1.646189 GGCACTCGGAAGAAGACATC 58.354 55.000 0.00 0.00 41.32 3.06
67 68 0.250513 GGGCACTCGGAAGAAGACAT 59.749 55.000 0.00 0.00 41.32 3.06
68 69 0.832135 AGGGCACTCGGAAGAAGACA 60.832 55.000 0.00 0.00 41.32 3.41
69 70 1.183549 TAGGGCACTCGGAAGAAGAC 58.816 55.000 0.00 0.00 41.32 3.01
70 71 2.160721 ATAGGGCACTCGGAAGAAGA 57.839 50.000 0.00 0.00 41.32 2.87
71 72 2.990066 AATAGGGCACTCGGAAGAAG 57.010 50.000 0.00 0.00 41.32 2.85
72 73 3.713826 AAAATAGGGCACTCGGAAGAA 57.286 42.857 0.00 0.00 41.32 2.52
73 74 4.028131 TCTAAAATAGGGCACTCGGAAGA 58.972 43.478 0.00 0.00 39.12 2.87
74 75 4.402056 TCTAAAATAGGGCACTCGGAAG 57.598 45.455 0.00 0.00 0.00 3.46
75 76 4.407621 TGATCTAAAATAGGGCACTCGGAA 59.592 41.667 0.00 0.00 0.00 4.30
76 77 3.964688 TGATCTAAAATAGGGCACTCGGA 59.035 43.478 0.00 0.00 0.00 4.55
77 78 4.336889 TGATCTAAAATAGGGCACTCGG 57.663 45.455 0.00 0.00 0.00 4.63
78 79 7.099764 ACATATGATCTAAAATAGGGCACTCG 58.900 38.462 10.38 0.00 0.00 4.18
80 81 9.896645 CATACATATGATCTAAAATAGGGCACT 57.103 33.333 10.38 0.00 35.75 4.40
81 82 9.890629 TCATACATATGATCTAAAATAGGGCAC 57.109 33.333 10.38 0.00 37.76 5.01
83 84 9.050601 GCTCATACATATGATCTAAAATAGGGC 57.949 37.037 10.38 0.00 41.46 5.19
118 119 9.745018 ATGCATCACTAGGTGCTATTTTTATAT 57.255 29.630 15.13 0.00 41.78 0.86
120 121 9.745018 ATATGCATCACTAGGTGCTATTTTTAT 57.255 29.630 0.19 4.67 41.78 1.40
121 122 9.573166 AATATGCATCACTAGGTGCTATTTTTA 57.427 29.630 0.19 0.00 41.78 1.52
122 123 8.469309 AATATGCATCACTAGGTGCTATTTTT 57.531 30.769 0.19 3.60 41.78 1.94
123 124 8.469309 AAATATGCATCACTAGGTGCTATTTT 57.531 30.769 0.19 10.08 41.78 1.82
124 125 8.355169 CAAAATATGCATCACTAGGTGCTATTT 58.645 33.333 0.19 16.18 41.78 1.40
125 126 7.503566 ACAAAATATGCATCACTAGGTGCTATT 59.496 33.333 0.19 12.94 41.78 1.73
126 127 7.000472 ACAAAATATGCATCACTAGGTGCTAT 59.000 34.615 0.19 10.58 41.78 2.97
127 128 6.356556 ACAAAATATGCATCACTAGGTGCTA 58.643 36.000 0.19 7.93 41.78 3.49
128 129 5.195940 ACAAAATATGCATCACTAGGTGCT 58.804 37.500 0.19 6.47 41.78 4.40
129 130 5.505173 ACAAAATATGCATCACTAGGTGC 57.495 39.130 0.19 9.32 41.61 5.01
130 131 7.537715 TGAAACAAAATATGCATCACTAGGTG 58.462 34.615 0.19 0.00 34.45 4.00
131 132 7.629222 GCTGAAACAAAATATGCATCACTAGGT 60.629 37.037 0.19 0.00 0.00 3.08
132 133 6.694411 GCTGAAACAAAATATGCATCACTAGG 59.306 38.462 0.19 0.00 0.00 3.02
133 134 6.694411 GGCTGAAACAAAATATGCATCACTAG 59.306 38.462 0.19 0.00 0.00 2.57
134 135 6.563422 GGCTGAAACAAAATATGCATCACTA 58.437 36.000 0.19 0.00 0.00 2.74
135 136 5.413499 GGCTGAAACAAAATATGCATCACT 58.587 37.500 0.19 0.00 0.00 3.41
136 137 4.266029 CGGCTGAAACAAAATATGCATCAC 59.734 41.667 0.19 0.00 0.00 3.06
137 138 4.422840 CGGCTGAAACAAAATATGCATCA 58.577 39.130 0.19 0.00 0.00 3.07
138 139 3.243643 GCGGCTGAAACAAAATATGCATC 59.756 43.478 0.19 0.00 0.00 3.91
139 140 3.189285 GCGGCTGAAACAAAATATGCAT 58.811 40.909 3.79 3.79 0.00 3.96
140 141 2.605030 GCGGCTGAAACAAAATATGCA 58.395 42.857 0.00 0.00 0.00 3.96
141 142 1.583404 CGCGGCTGAAACAAAATATGC 59.417 47.619 0.00 0.00 0.00 3.14
142 143 2.593775 CACGCGGCTGAAACAAAATATG 59.406 45.455 12.47 0.00 0.00 1.78
143 144 2.415357 CCACGCGGCTGAAACAAAATAT 60.415 45.455 12.47 0.00 0.00 1.28
144 145 1.068885 CCACGCGGCTGAAACAAAATA 60.069 47.619 12.47 0.00 0.00 1.40
145 146 0.318614 CCACGCGGCTGAAACAAAAT 60.319 50.000 12.47 0.00 0.00 1.82
146 147 1.064946 CCACGCGGCTGAAACAAAA 59.935 52.632 12.47 0.00 0.00 2.44
147 148 2.054140 GACCACGCGGCTGAAACAAA 62.054 55.000 12.47 0.00 34.57 2.83
148 149 2.515057 ACCACGCGGCTGAAACAA 60.515 55.556 12.47 0.00 34.57 2.83
149 150 2.970324 GACCACGCGGCTGAAACA 60.970 61.111 12.47 0.00 34.57 2.83
150 151 4.072088 CGACCACGCGGCTGAAAC 62.072 66.667 12.47 0.00 34.57 2.78
171 172 3.717294 ATCACCACGGGAGCCCAC 61.717 66.667 6.34 0.00 35.37 4.61
172 173 3.716195 CATCACCACGGGAGCCCA 61.716 66.667 6.34 0.00 35.37 5.36
173 174 3.717294 ACATCACCACGGGAGCCC 61.717 66.667 0.00 0.00 0.00 5.19
174 175 2.436646 CACATCACCACGGGAGCC 60.437 66.667 0.00 0.00 0.00 4.70
175 176 2.436646 CCACATCACCACGGGAGC 60.437 66.667 0.00 0.00 0.00 4.70
176 177 0.253044 ATTCCACATCACCACGGGAG 59.747 55.000 0.00 0.00 0.00 4.30
177 178 0.695924 AATTCCACATCACCACGGGA 59.304 50.000 0.00 0.00 0.00 5.14
178 179 1.202114 CAAATTCCACATCACCACGGG 59.798 52.381 0.00 0.00 0.00 5.28
179 180 1.402720 GCAAATTCCACATCACCACGG 60.403 52.381 0.00 0.00 0.00 4.94
180 181 1.541147 AGCAAATTCCACATCACCACG 59.459 47.619 0.00 0.00 0.00 4.94
181 182 2.414559 CGAGCAAATTCCACATCACCAC 60.415 50.000 0.00 0.00 0.00 4.16
182 183 1.811965 CGAGCAAATTCCACATCACCA 59.188 47.619 0.00 0.00 0.00 4.17
183 184 2.083774 TCGAGCAAATTCCACATCACC 58.916 47.619 0.00 0.00 0.00 4.02
184 185 3.002791 TCTCGAGCAAATTCCACATCAC 58.997 45.455 7.81 0.00 0.00 3.06
185 186 3.264947 CTCTCGAGCAAATTCCACATCA 58.735 45.455 7.81 0.00 0.00 3.07
186 187 3.940657 CTCTCGAGCAAATTCCACATC 57.059 47.619 7.81 0.00 0.00 3.06
219 220 3.119779 GGCCACCAAATGATGCAAATTTG 60.120 43.478 22.31 22.31 42.24 2.32
220 221 3.083293 GGCCACCAAATGATGCAAATTT 58.917 40.909 0.00 0.00 0.00 1.82
221 222 2.306512 AGGCCACCAAATGATGCAAATT 59.693 40.909 5.01 0.00 0.00 1.82
222 223 1.910671 AGGCCACCAAATGATGCAAAT 59.089 42.857 5.01 0.00 0.00 2.32
223 224 1.275856 GAGGCCACCAAATGATGCAAA 59.724 47.619 5.01 0.00 0.00 3.68
224 225 0.896923 GAGGCCACCAAATGATGCAA 59.103 50.000 5.01 0.00 0.00 4.08
225 226 0.040058 AGAGGCCACCAAATGATGCA 59.960 50.000 5.01 0.00 0.00 3.96
226 227 1.188863 AAGAGGCCACCAAATGATGC 58.811 50.000 5.01 0.00 0.00 3.91
227 228 3.967332 AAAAGAGGCCACCAAATGATG 57.033 42.857 5.01 0.00 0.00 3.07
228 229 4.415596 TGTAAAAGAGGCCACCAAATGAT 58.584 39.130 5.01 0.00 0.00 2.45
229 230 3.838565 TGTAAAAGAGGCCACCAAATGA 58.161 40.909 5.01 0.00 0.00 2.57
230 231 4.220382 TGATGTAAAAGAGGCCACCAAATG 59.780 41.667 5.01 0.00 0.00 2.32
231 232 4.220602 GTGATGTAAAAGAGGCCACCAAAT 59.779 41.667 5.01 0.00 0.00 2.32
232 233 3.572255 GTGATGTAAAAGAGGCCACCAAA 59.428 43.478 5.01 0.00 0.00 3.28
233 234 3.153919 GTGATGTAAAAGAGGCCACCAA 58.846 45.455 5.01 0.00 0.00 3.67
234 235 2.107378 TGTGATGTAAAAGAGGCCACCA 59.893 45.455 5.01 0.00 0.00 4.17
235 236 2.488153 GTGTGATGTAAAAGAGGCCACC 59.512 50.000 5.01 0.00 0.00 4.61
236 237 2.488153 GGTGTGATGTAAAAGAGGCCAC 59.512 50.000 5.01 0.00 0.00 5.01
237 238 2.554344 GGGTGTGATGTAAAAGAGGCCA 60.554 50.000 5.01 0.00 0.00 5.36
238 239 2.092323 GGGTGTGATGTAAAAGAGGCC 58.908 52.381 0.00 0.00 0.00 5.19
239 240 3.010420 GAGGGTGTGATGTAAAAGAGGC 58.990 50.000 0.00 0.00 0.00 4.70
240 241 4.286297 TGAGGGTGTGATGTAAAAGAGG 57.714 45.455 0.00 0.00 0.00 3.69
241 242 4.878397 GGATGAGGGTGTGATGTAAAAGAG 59.122 45.833 0.00 0.00 0.00 2.85
242 243 4.324254 GGGATGAGGGTGTGATGTAAAAGA 60.324 45.833 0.00 0.00 0.00 2.52
243 244 3.947834 GGGATGAGGGTGTGATGTAAAAG 59.052 47.826 0.00 0.00 0.00 2.27
244 245 3.332187 TGGGATGAGGGTGTGATGTAAAA 59.668 43.478 0.00 0.00 0.00 1.52
245 246 2.916269 TGGGATGAGGGTGTGATGTAAA 59.084 45.455 0.00 0.00 0.00 2.01
246 247 2.556766 TGGGATGAGGGTGTGATGTAA 58.443 47.619 0.00 0.00 0.00 2.41
247 248 2.262266 TGGGATGAGGGTGTGATGTA 57.738 50.000 0.00 0.00 0.00 2.29
248 249 1.492176 GATGGGATGAGGGTGTGATGT 59.508 52.381 0.00 0.00 0.00 3.06
249 250 1.202855 GGATGGGATGAGGGTGTGATG 60.203 57.143 0.00 0.00 0.00 3.07
250 251 1.143813 GGATGGGATGAGGGTGTGAT 58.856 55.000 0.00 0.00 0.00 3.06
251 252 0.044702 AGGATGGGATGAGGGTGTGA 59.955 55.000 0.00 0.00 0.00 3.58
252 253 0.182061 CAGGATGGGATGAGGGTGTG 59.818 60.000 0.00 0.00 0.00 3.82
253 254 2.625252 CAGGATGGGATGAGGGTGT 58.375 57.895 0.00 0.00 0.00 4.16
265 266 8.636213 AGATGCAAATATTTTTACTCCAGGATG 58.364 33.333 0.00 0.00 0.00 3.51
266 267 8.773033 AGATGCAAATATTTTTACTCCAGGAT 57.227 30.769 0.00 0.00 0.00 3.24
267 268 9.120538 GTAGATGCAAATATTTTTACTCCAGGA 57.879 33.333 0.00 0.00 0.00 3.86
268 269 8.902806 TGTAGATGCAAATATTTTTACTCCAGG 58.097 33.333 0.00 0.00 0.00 4.45
279 280 9.976511 CCAAAAGATGATGTAGATGCAAATATT 57.023 29.630 0.00 0.00 0.00 1.28
280 281 9.139734 ACCAAAAGATGATGTAGATGCAAATAT 57.860 29.630 0.00 0.00 0.00 1.28
281 282 8.407832 CACCAAAAGATGATGTAGATGCAAATA 58.592 33.333 0.00 0.00 0.00 1.40
282 283 7.262772 CACCAAAAGATGATGTAGATGCAAAT 58.737 34.615 0.00 0.00 0.00 2.32
283 284 6.623486 CACCAAAAGATGATGTAGATGCAAA 58.377 36.000 0.00 0.00 0.00 3.68
284 285 5.393352 GCACCAAAAGATGATGTAGATGCAA 60.393 40.000 0.00 0.00 0.00 4.08
285 286 4.096833 GCACCAAAAGATGATGTAGATGCA 59.903 41.667 0.00 0.00 0.00 3.96
286 287 4.096833 TGCACCAAAAGATGATGTAGATGC 59.903 41.667 0.00 0.00 0.00 3.91
287 288 5.823209 TGCACCAAAAGATGATGTAGATG 57.177 39.130 0.00 0.00 0.00 2.90
288 289 5.163723 CGTTGCACCAAAAGATGATGTAGAT 60.164 40.000 0.00 0.00 0.00 1.98
289 290 4.154015 CGTTGCACCAAAAGATGATGTAGA 59.846 41.667 0.00 0.00 0.00 2.59
290 291 4.083324 ACGTTGCACCAAAAGATGATGTAG 60.083 41.667 0.00 0.00 0.00 2.74
291 292 3.818210 ACGTTGCACCAAAAGATGATGTA 59.182 39.130 0.00 0.00 0.00 2.29
292 293 2.622942 ACGTTGCACCAAAAGATGATGT 59.377 40.909 0.00 0.00 0.00 3.06
293 294 3.287312 ACGTTGCACCAAAAGATGATG 57.713 42.857 0.00 0.00 0.00 3.07
294 295 4.320608 AAACGTTGCACCAAAAGATGAT 57.679 36.364 0.00 0.00 0.00 2.45
295 296 3.791973 AAACGTTGCACCAAAAGATGA 57.208 38.095 0.00 0.00 0.00 2.92
296 297 4.576678 CAAAAACGTTGCACCAAAAGATG 58.423 39.130 0.00 0.00 0.00 2.90
297 298 3.063316 GCAAAAACGTTGCACCAAAAGAT 59.937 39.130 0.00 0.00 44.34 2.40
298 299 2.413453 GCAAAAACGTTGCACCAAAAGA 59.587 40.909 0.00 0.00 44.34 2.52
299 300 2.475353 GGCAAAAACGTTGCACCAAAAG 60.475 45.455 12.42 0.00 46.58 2.27
300 301 1.464997 GGCAAAAACGTTGCACCAAAA 59.535 42.857 12.42 0.00 46.58 2.44
301 302 1.079503 GGCAAAAACGTTGCACCAAA 58.920 45.000 12.42 0.00 46.58 3.28
302 303 0.247736 AGGCAAAAACGTTGCACCAA 59.752 45.000 12.42 0.00 46.58 3.67
303 304 0.179124 GAGGCAAAAACGTTGCACCA 60.179 50.000 12.42 0.00 46.58 4.17
304 305 0.102300 AGAGGCAAAAACGTTGCACC 59.898 50.000 12.42 7.31 46.58 5.01
305 306 1.477105 GAGAGGCAAAAACGTTGCAC 58.523 50.000 12.42 6.14 46.58 4.57
306 307 0.028770 CGAGAGGCAAAAACGTTGCA 59.971 50.000 12.42 0.00 46.58 4.08
307 308 0.028902 ACGAGAGGCAAAAACGTTGC 59.971 50.000 0.00 0.83 44.22 4.17
308 309 1.329292 TCACGAGAGGCAAAAACGTTG 59.671 47.619 0.00 0.00 35.05 4.10
309 310 1.658994 TCACGAGAGGCAAAAACGTT 58.341 45.000 0.00 0.00 35.05 3.99
310 311 1.531149 CATCACGAGAGGCAAAAACGT 59.469 47.619 0.00 0.00 37.68 3.99
311 312 1.531149 ACATCACGAGAGGCAAAAACG 59.469 47.619 0.00 0.00 0.00 3.60
312 313 3.994392 TCTACATCACGAGAGGCAAAAAC 59.006 43.478 0.00 0.00 0.00 2.43
313 314 4.021456 TCTCTACATCACGAGAGGCAAAAA 60.021 41.667 0.00 0.00 39.79 1.94
314 315 3.509967 TCTCTACATCACGAGAGGCAAAA 59.490 43.478 0.00 0.00 39.79 2.44
315 316 3.089284 TCTCTACATCACGAGAGGCAAA 58.911 45.455 0.00 0.00 39.79 3.68
316 317 2.685388 CTCTCTACATCACGAGAGGCAA 59.315 50.000 8.11 0.00 45.96 4.52
317 318 2.293170 CTCTCTACATCACGAGAGGCA 58.707 52.381 8.11 0.00 45.96 4.75
321 322 3.685272 GTGTCACTCTCTACATCACGAGA 59.315 47.826 0.00 0.00 35.20 4.04
322 323 3.181505 GGTGTCACTCTCTACATCACGAG 60.182 52.174 2.35 0.00 0.00 4.18
323 324 2.747989 GGTGTCACTCTCTACATCACGA 59.252 50.000 2.35 0.00 0.00 4.35
324 325 2.488153 TGGTGTCACTCTCTACATCACG 59.512 50.000 2.35 0.00 31.91 4.35
325 326 4.440802 GGATGGTGTCACTCTCTACATCAC 60.441 50.000 15.24 5.70 39.41 3.06
326 327 3.701542 GGATGGTGTCACTCTCTACATCA 59.298 47.826 15.24 0.00 40.77 3.07
327 328 3.957497 AGGATGGTGTCACTCTCTACATC 59.043 47.826 2.35 6.08 34.16 3.06
328 329 3.987745 AGGATGGTGTCACTCTCTACAT 58.012 45.455 2.35 0.00 0.00 2.29
329 330 3.458044 AGGATGGTGTCACTCTCTACA 57.542 47.619 2.35 0.00 0.00 2.74
330 331 6.276847 CAAATAGGATGGTGTCACTCTCTAC 58.723 44.000 2.35 0.00 0.00 2.59
331 332 5.163405 GCAAATAGGATGGTGTCACTCTCTA 60.163 44.000 2.35 1.45 0.00 2.43
332 333 4.383552 GCAAATAGGATGGTGTCACTCTCT 60.384 45.833 2.35 0.00 0.00 3.10
333 334 3.873952 GCAAATAGGATGGTGTCACTCTC 59.126 47.826 2.35 0.21 0.00 3.20
334 335 3.264193 TGCAAATAGGATGGTGTCACTCT 59.736 43.478 2.35 0.00 0.00 3.24
335 336 3.609853 TGCAAATAGGATGGTGTCACTC 58.390 45.455 2.35 0.00 0.00 3.51
336 337 3.719268 TGCAAATAGGATGGTGTCACT 57.281 42.857 2.35 0.00 0.00 3.41
337 338 3.947196 TGATGCAAATAGGATGGTGTCAC 59.053 43.478 0.00 0.00 0.00 3.67
338 339 4.233632 TGATGCAAATAGGATGGTGTCA 57.766 40.909 0.00 0.00 0.00 3.58
339 340 5.068636 AGATGATGCAAATAGGATGGTGTC 58.931 41.667 0.00 0.00 0.00 3.67
340 341 5.057843 AGATGATGCAAATAGGATGGTGT 57.942 39.130 0.00 0.00 0.00 4.16
341 342 6.401047 AAAGATGATGCAAATAGGATGGTG 57.599 37.500 0.00 0.00 0.00 4.17
342 343 7.427989 AAAAAGATGATGCAAATAGGATGGT 57.572 32.000 0.00 0.00 0.00 3.55
389 390 9.836864 AAGCCTTGTCTCAAAAGAAATAAAATT 57.163 25.926 0.00 0.00 31.93 1.82
390 391 9.481340 GAAGCCTTGTCTCAAAAGAAATAAAAT 57.519 29.630 0.00 0.00 31.93 1.82
391 392 7.926018 GGAAGCCTTGTCTCAAAAGAAATAAAA 59.074 33.333 0.00 0.00 31.93 1.52
392 393 7.433680 GGAAGCCTTGTCTCAAAAGAAATAAA 58.566 34.615 0.00 0.00 31.93 1.40
393 394 6.293955 CGGAAGCCTTGTCTCAAAAGAAATAA 60.294 38.462 0.00 0.00 31.93 1.40
394 395 5.181245 CGGAAGCCTTGTCTCAAAAGAAATA 59.819 40.000 0.00 0.00 31.93 1.40
395 396 4.022849 CGGAAGCCTTGTCTCAAAAGAAAT 60.023 41.667 0.00 0.00 31.93 2.17
396 397 3.315191 CGGAAGCCTTGTCTCAAAAGAAA 59.685 43.478 0.00 0.00 31.93 2.52
397 398 2.878406 CGGAAGCCTTGTCTCAAAAGAA 59.122 45.455 0.00 0.00 31.93 2.52
398 399 2.158813 ACGGAAGCCTTGTCTCAAAAGA 60.159 45.455 0.00 0.00 0.00 2.52
399 400 2.222027 ACGGAAGCCTTGTCTCAAAAG 58.778 47.619 0.00 0.00 0.00 2.27
400 401 2.341846 ACGGAAGCCTTGTCTCAAAA 57.658 45.000 0.00 0.00 0.00 2.44
401 402 2.341846 AACGGAAGCCTTGTCTCAAA 57.658 45.000 0.00 0.00 0.00 2.69
402 403 2.103432 TGTAACGGAAGCCTTGTCTCAA 59.897 45.455 0.00 0.00 0.00 3.02
403 404 1.689813 TGTAACGGAAGCCTTGTCTCA 59.310 47.619 0.00 0.00 0.00 3.27
404 405 2.450609 TGTAACGGAAGCCTTGTCTC 57.549 50.000 0.00 0.00 0.00 3.36
405 406 2.922740 TTGTAACGGAAGCCTTGTCT 57.077 45.000 0.00 0.00 0.00 3.41
406 407 3.314357 AGTTTTGTAACGGAAGCCTTGTC 59.686 43.478 0.00 0.00 39.31 3.18
407 408 3.284617 AGTTTTGTAACGGAAGCCTTGT 58.715 40.909 0.00 0.00 39.31 3.16
408 409 3.982576 AGTTTTGTAACGGAAGCCTTG 57.017 42.857 0.00 0.00 39.31 3.61
409 410 4.964593 TCTAGTTTTGTAACGGAAGCCTT 58.035 39.130 0.00 0.00 39.31 4.35
410 411 4.612264 TCTAGTTTTGTAACGGAAGCCT 57.388 40.909 0.00 0.00 39.31 4.58
411 412 4.032558 CGATCTAGTTTTGTAACGGAAGCC 59.967 45.833 0.00 0.00 39.31 4.35
412 413 4.032558 CCGATCTAGTTTTGTAACGGAAGC 59.967 45.833 0.00 0.00 41.30 3.86
413 414 4.565564 CCCGATCTAGTTTTGTAACGGAAG 59.434 45.833 0.00 0.00 41.30 3.46
414 415 4.021192 ACCCGATCTAGTTTTGTAACGGAA 60.021 41.667 0.00 0.00 41.30 4.30
415 416 3.511146 ACCCGATCTAGTTTTGTAACGGA 59.489 43.478 0.00 0.00 41.30 4.69
416 417 3.853475 ACCCGATCTAGTTTTGTAACGG 58.147 45.455 0.00 0.00 39.31 4.44
417 418 4.561606 CAGACCCGATCTAGTTTTGTAACG 59.438 45.833 0.00 0.00 35.90 3.18
418 419 4.868734 CCAGACCCGATCTAGTTTTGTAAC 59.131 45.833 0.00 0.00 35.15 2.50
419 420 4.529377 ACCAGACCCGATCTAGTTTTGTAA 59.471 41.667 0.00 0.00 35.15 2.41
420 421 4.091549 ACCAGACCCGATCTAGTTTTGTA 58.908 43.478 0.00 0.00 35.15 2.41
421 422 2.904434 ACCAGACCCGATCTAGTTTTGT 59.096 45.455 0.00 0.00 35.15 2.83
422 423 3.611766 ACCAGACCCGATCTAGTTTTG 57.388 47.619 0.00 0.00 35.15 2.44
423 424 3.838903 AGAACCAGACCCGATCTAGTTTT 59.161 43.478 2.94 0.00 39.12 2.43
424 425 3.195825 CAGAACCAGACCCGATCTAGTTT 59.804 47.826 2.94 0.00 39.12 2.66
425 426 2.761208 CAGAACCAGACCCGATCTAGTT 59.239 50.000 1.29 1.29 41.37 2.24
426 427 2.379972 CAGAACCAGACCCGATCTAGT 58.620 52.381 0.00 0.00 35.15 2.57
427 428 1.683917 CCAGAACCAGACCCGATCTAG 59.316 57.143 0.00 0.00 35.15 2.43
428 429 1.776662 CCAGAACCAGACCCGATCTA 58.223 55.000 0.00 0.00 35.15 1.98
429 430 1.617947 GCCAGAACCAGACCCGATCT 61.618 60.000 0.00 0.00 38.66 2.75
430 431 1.153349 GCCAGAACCAGACCCGATC 60.153 63.158 0.00 0.00 0.00 3.69
431 432 2.990479 GCCAGAACCAGACCCGAT 59.010 61.111 0.00 0.00 0.00 4.18
432 433 3.691342 CGCCAGAACCAGACCCGA 61.691 66.667 0.00 0.00 0.00 5.14
434 435 4.329545 TGCGCCAGAACCAGACCC 62.330 66.667 4.18 0.00 0.00 4.46
435 436 3.050275 GTGCGCCAGAACCAGACC 61.050 66.667 4.18 0.00 0.00 3.85
436 437 3.414700 CGTGCGCCAGAACCAGAC 61.415 66.667 4.18 0.00 0.00 3.51
437 438 4.680237 CCGTGCGCCAGAACCAGA 62.680 66.667 4.18 0.00 0.00 3.86
457 458 4.083862 GAGACGGTGAGGTGGGCC 62.084 72.222 0.00 0.00 0.00 5.80
458 459 4.436998 CGAGACGGTGAGGTGGGC 62.437 72.222 0.00 0.00 0.00 5.36
459 460 2.989824 ACGAGACGGTGAGGTGGG 60.990 66.667 0.00 0.00 0.00 4.61
460 461 2.258591 CACGAGACGGTGAGGTGG 59.741 66.667 0.00 0.00 40.38 4.61
461 462 2.258591 CCACGAGACGGTGAGGTG 59.741 66.667 0.00 0.00 40.38 4.00
462 463 2.989824 CCCACGAGACGGTGAGGT 60.990 66.667 0.00 0.00 40.38 3.85
463 464 3.760035 CCCCACGAGACGGTGAGG 61.760 72.222 0.00 0.00 40.38 3.86
464 465 4.436998 GCCCCACGAGACGGTGAG 62.437 72.222 0.00 0.00 40.38 3.51
468 469 4.436998 GAGTGCCCCACGAGACGG 62.437 72.222 0.00 0.00 39.64 4.79
469 470 4.436998 GGAGTGCCCCACGAGACG 62.437 72.222 0.00 0.00 39.64 4.18
470 471 2.508586 GAAGGAGTGCCCCACGAGAC 62.509 65.000 0.00 0.00 39.64 3.36
471 472 2.203788 AAGGAGTGCCCCACGAGA 60.204 61.111 0.00 0.00 39.64 4.04
472 473 2.266055 GAAGGAGTGCCCCACGAG 59.734 66.667 0.00 0.00 39.64 4.18
473 474 3.691342 CGAAGGAGTGCCCCACGA 61.691 66.667 0.00 0.00 39.64 4.35
486 487 1.868469 TGTTTACACCCGAACCGAAG 58.132 50.000 0.00 0.00 0.00 3.79
487 488 2.547299 ATGTTTACACCCGAACCGAA 57.453 45.000 0.00 0.00 0.00 4.30
488 489 3.324993 GTTATGTTTACACCCGAACCGA 58.675 45.455 0.00 0.00 0.00 4.69
489 490 2.092524 CGTTATGTTTACACCCGAACCG 59.907 50.000 0.00 0.00 0.00 4.44
490 491 2.416202 CCGTTATGTTTACACCCGAACC 59.584 50.000 0.00 0.00 0.00 3.62
491 492 3.066380 ACCGTTATGTTTACACCCGAAC 58.934 45.455 0.00 0.00 0.00 3.95
492 493 3.399440 ACCGTTATGTTTACACCCGAA 57.601 42.857 0.00 0.00 0.00 4.30
493 494 3.399440 AACCGTTATGTTTACACCCGA 57.601 42.857 0.00 0.00 0.00 5.14
494 495 3.423384 CGAAACCGTTATGTTTACACCCG 60.423 47.826 0.00 0.00 38.51 5.28
495 496 3.667695 GCGAAACCGTTATGTTTACACCC 60.668 47.826 0.00 0.00 38.51 4.61
496 497 3.481839 GCGAAACCGTTATGTTTACACC 58.518 45.455 0.00 0.00 38.51 4.16
497 498 3.481839 GGCGAAACCGTTATGTTTACAC 58.518 45.455 0.00 0.00 38.51 2.90
498 499 2.483491 GGGCGAAACCGTTATGTTTACA 59.517 45.455 0.00 0.00 38.51 2.41
499 500 2.743664 AGGGCGAAACCGTTATGTTTAC 59.256 45.455 0.00 0.00 38.51 2.01
500 501 2.743126 CAGGGCGAAACCGTTATGTTTA 59.257 45.455 0.00 0.00 38.51 2.01
501 502 1.538075 CAGGGCGAAACCGTTATGTTT 59.462 47.619 0.00 0.00 40.99 2.83
502 503 1.161843 CAGGGCGAAACCGTTATGTT 58.838 50.000 0.00 0.00 40.62 2.71
503 504 0.035739 ACAGGGCGAAACCGTTATGT 59.964 50.000 0.00 0.00 40.62 2.29
504 505 1.931172 CTACAGGGCGAAACCGTTATG 59.069 52.381 0.00 0.00 40.62 1.90
505 506 1.551883 ACTACAGGGCGAAACCGTTAT 59.448 47.619 0.00 0.00 40.62 1.89
506 507 0.968405 ACTACAGGGCGAAACCGTTA 59.032 50.000 0.00 0.00 40.62 3.18
507 508 0.107268 AACTACAGGGCGAAACCGTT 59.893 50.000 0.00 0.00 40.62 4.44
508 509 0.107268 AAACTACAGGGCGAAACCGT 59.893 50.000 0.00 0.00 40.62 4.83
509 510 0.794473 GAAACTACAGGGCGAAACCG 59.206 55.000 0.00 0.00 40.62 4.44
510 511 1.886886 TGAAACTACAGGGCGAAACC 58.113 50.000 0.00 0.00 37.93 3.27
511 512 2.418976 GGATGAAACTACAGGGCGAAAC 59.581 50.000 0.00 0.00 0.00 2.78
512 513 2.617021 GGGATGAAACTACAGGGCGAAA 60.617 50.000 0.00 0.00 0.00 3.46
513 514 1.065709 GGGATGAAACTACAGGGCGAA 60.066 52.381 0.00 0.00 0.00 4.70
514 515 0.539986 GGGATGAAACTACAGGGCGA 59.460 55.000 0.00 0.00 0.00 5.54
515 516 0.810031 CGGGATGAAACTACAGGGCG 60.810 60.000 0.00 0.00 0.00 6.13
516 517 0.252197 ACGGGATGAAACTACAGGGC 59.748 55.000 0.00 0.00 0.00 5.19
517 518 1.831736 AGACGGGATGAAACTACAGGG 59.168 52.381 0.00 0.00 0.00 4.45
518 519 2.479730 CGAGACGGGATGAAACTACAGG 60.480 54.545 0.00 0.00 0.00 4.00
519 520 2.422479 TCGAGACGGGATGAAACTACAG 59.578 50.000 0.00 0.00 0.00 2.74
520 521 2.439409 TCGAGACGGGATGAAACTACA 58.561 47.619 0.00 0.00 0.00 2.74
521 522 3.177487 GTTCGAGACGGGATGAAACTAC 58.823 50.000 0.00 0.00 0.00 2.73
522 523 2.821378 TGTTCGAGACGGGATGAAACTA 59.179 45.455 0.00 0.00 0.00 2.24
523 524 1.616865 TGTTCGAGACGGGATGAAACT 59.383 47.619 0.00 0.00 0.00 2.66
524 525 1.993370 CTGTTCGAGACGGGATGAAAC 59.007 52.381 0.00 0.00 0.00 2.78
525 526 2.363788 CTGTTCGAGACGGGATGAAA 57.636 50.000 0.00 0.00 0.00 2.69
532 533 2.558554 ATTCGGCCTGTTCGAGACGG 62.559 60.000 0.00 0.00 37.93 4.79
533 534 1.140407 GATTCGGCCTGTTCGAGACG 61.140 60.000 0.00 0.00 37.93 4.18
534 535 1.140407 CGATTCGGCCTGTTCGAGAC 61.140 60.000 11.33 0.00 37.93 3.36
535 536 1.138883 CGATTCGGCCTGTTCGAGA 59.861 57.895 11.33 0.00 37.93 4.04
536 537 0.736325 AACGATTCGGCCTGTTCGAG 60.736 55.000 20.43 1.37 37.93 4.04
537 538 0.734942 GAACGATTCGGCCTGTTCGA 60.735 55.000 20.43 1.71 35.64 3.71
538 539 1.708027 GAACGATTCGGCCTGTTCG 59.292 57.895 11.29 14.22 37.60 3.95
548 549 2.159693 GGAAGAAAGGCACGAACGATTC 60.160 50.000 0.14 0.00 0.00 2.52
549 550 1.804748 GGAAGAAAGGCACGAACGATT 59.195 47.619 0.14 0.00 0.00 3.34
550 551 1.439679 GGAAGAAAGGCACGAACGAT 58.560 50.000 0.14 0.00 0.00 3.73
551 552 0.601841 GGGAAGAAAGGCACGAACGA 60.602 55.000 0.14 0.00 0.00 3.85
552 553 1.574702 GGGGAAGAAAGGCACGAACG 61.575 60.000 0.00 0.00 0.00 3.95
553 554 1.574702 CGGGGAAGAAAGGCACGAAC 61.575 60.000 0.00 0.00 0.00 3.95
554 555 1.302192 CGGGGAAGAAAGGCACGAA 60.302 57.895 0.00 0.00 0.00 3.85
555 556 2.345991 CGGGGAAGAAAGGCACGA 59.654 61.111 0.00 0.00 0.00 4.35
556 557 2.746277 CCGGGGAAGAAAGGCACG 60.746 66.667 0.00 0.00 0.00 5.34
557 558 1.377333 CTCCGGGGAAGAAAGGCAC 60.377 63.158 0.00 0.00 0.00 5.01
558 559 3.077907 CTCCGGGGAAGAAAGGCA 58.922 61.111 0.00 0.00 0.00 4.75
559 560 2.438614 GCTCCGGGGAAGAAAGGC 60.439 66.667 4.80 0.00 0.00 4.35
560 561 1.222113 GAGCTCCGGGGAAGAAAGG 59.778 63.158 4.80 0.00 0.00 3.11
561 562 1.153549 CGAGCTCCGGGGAAGAAAG 60.154 63.158 4.80 0.00 33.91 2.62
562 563 2.978824 CGAGCTCCGGGGAAGAAA 59.021 61.111 4.80 0.00 33.91 2.52
571 572 2.384203 GGATTTGTTCCGAGCTCCG 58.616 57.895 8.47 1.13 33.93 4.63
579 580 1.090052 CGGCGAGGAGGATTTGTTCC 61.090 60.000 0.00 0.00 45.85 3.62
580 581 1.090052 CCGGCGAGGAGGATTTGTTC 61.090 60.000 9.30 0.00 45.00 3.18
581 582 1.078426 CCGGCGAGGAGGATTTGTT 60.078 57.895 9.30 0.00 45.00 2.83
582 583 2.584608 CCGGCGAGGAGGATTTGT 59.415 61.111 9.30 0.00 45.00 2.83
583 584 2.897350 GCCGGCGAGGAGGATTTG 60.897 66.667 12.58 0.00 45.00 2.32
584 585 4.530857 CGCCGGCGAGGAGGATTT 62.531 66.667 44.86 0.00 45.00 2.17
811 812 0.106335 TTACCAACGGCAGAACGGAA 59.894 50.000 0.00 0.00 38.39 4.30
812 813 0.320073 CTTACCAACGGCAGAACGGA 60.320 55.000 0.00 0.00 38.39 4.69
813 814 1.908066 GCTTACCAACGGCAGAACGG 61.908 60.000 0.00 0.00 38.39 4.44
814 815 1.225376 TGCTTACCAACGGCAGAACG 61.225 55.000 0.00 0.00 40.31 3.95
815 816 0.948678 TTGCTTACCAACGGCAGAAC 59.051 50.000 0.00 0.00 37.28 3.01
816 817 1.335496 GTTTGCTTACCAACGGCAGAA 59.665 47.619 0.00 0.00 37.28 3.02
817 818 0.948678 GTTTGCTTACCAACGGCAGA 59.051 50.000 0.00 0.00 37.28 4.26
818 819 0.039527 GGTTTGCTTACCAACGGCAG 60.040 55.000 3.32 0.00 38.12 4.85
819 820 1.457009 GGGTTTGCTTACCAACGGCA 61.457 55.000 9.54 0.00 40.09 5.69
820 821 1.176619 AGGGTTTGCTTACCAACGGC 61.177 55.000 9.54 0.00 40.09 5.68
821 822 2.081462 CTAGGGTTTGCTTACCAACGG 58.919 52.381 9.54 0.00 40.09 4.44
822 823 1.467342 GCTAGGGTTTGCTTACCAACG 59.533 52.381 9.54 0.00 40.09 4.10
823 824 2.747989 GAGCTAGGGTTTGCTTACCAAC 59.252 50.000 9.54 0.00 39.91 3.77
824 825 2.614481 CGAGCTAGGGTTTGCTTACCAA 60.614 50.000 9.54 0.00 39.91 3.67
825 826 1.066430 CGAGCTAGGGTTTGCTTACCA 60.066 52.381 9.54 0.00 39.91 3.25
826 827 1.206371 TCGAGCTAGGGTTTGCTTACC 59.794 52.381 0.00 0.00 39.91 2.85
827 828 2.667473 TCGAGCTAGGGTTTGCTTAC 57.333 50.000 0.00 0.00 39.91 2.34
828 829 3.431766 GGAATCGAGCTAGGGTTTGCTTA 60.432 47.826 0.00 0.00 39.91 3.09
829 830 2.633488 GAATCGAGCTAGGGTTTGCTT 58.367 47.619 0.00 0.00 39.91 3.91
830 831 1.134371 GGAATCGAGCTAGGGTTTGCT 60.134 52.381 0.00 0.00 42.82 3.91
831 832 1.134371 AGGAATCGAGCTAGGGTTTGC 60.134 52.381 0.00 0.00 0.00 3.68
832 833 2.990066 AGGAATCGAGCTAGGGTTTG 57.010 50.000 0.00 0.00 0.00 2.93
833 834 3.545366 GAAGGAATCGAGCTAGGGTTT 57.455 47.619 0.00 0.00 0.00 3.27
850 851 1.196354 CAGAAGCAGAGCAAACCGAAG 59.804 52.381 0.00 0.00 0.00 3.79
855 856 0.957362 AAGGCAGAAGCAGAGCAAAC 59.043 50.000 0.00 0.00 44.61 2.93
880 881 0.997226 CCGACTGATTATCCGACGCG 60.997 60.000 3.53 3.53 0.00 6.01
883 884 1.276145 GCGCCGACTGATTATCCGAC 61.276 60.000 0.00 0.00 0.00 4.79
889 890 1.069090 GGATGGCGCCGACTGATTA 59.931 57.895 23.90 0.49 0.00 1.75
923 924 3.303791 GGTAATGGACCGCAAAATCGATC 60.304 47.826 0.00 0.00 38.87 3.69
1058 1062 0.744414 GTAAGCCGCAGCATCTTCCA 60.744 55.000 0.00 0.00 43.56 3.53
1107 1111 3.431725 CCTCGGCGCTTGTTTCCC 61.432 66.667 7.64 0.00 0.00 3.97
1240 1244 1.056869 CGGCATAAAACAAACGGCAC 58.943 50.000 0.00 0.00 0.00 5.01
1243 1247 1.538075 ACTCCGGCATAAAACAAACGG 59.462 47.619 0.00 0.00 42.45 4.44
1245 1249 3.978855 GTCAACTCCGGCATAAAACAAAC 59.021 43.478 0.00 0.00 0.00 2.93
1246 1250 3.886505 AGTCAACTCCGGCATAAAACAAA 59.113 39.130 0.00 0.00 0.00 2.83
1247 1251 3.482436 AGTCAACTCCGGCATAAAACAA 58.518 40.909 0.00 0.00 0.00 2.83
1248 1252 3.134574 AGTCAACTCCGGCATAAAACA 57.865 42.857 0.00 0.00 0.00 2.83
1249 1253 4.453136 TGTTAGTCAACTCCGGCATAAAAC 59.547 41.667 0.00 0.00 35.56 2.43
1250 1254 4.643463 TGTTAGTCAACTCCGGCATAAAA 58.357 39.130 0.00 0.00 35.56 1.52
1251 1255 4.274602 TGTTAGTCAACTCCGGCATAAA 57.725 40.909 0.00 0.00 35.56 1.40
1252 1256 3.965379 TGTTAGTCAACTCCGGCATAA 57.035 42.857 0.00 0.00 35.56 1.90
1253 1257 3.965379 TTGTTAGTCAACTCCGGCATA 57.035 42.857 0.00 0.00 35.56 3.14
1254 1258 2.851263 TTGTTAGTCAACTCCGGCAT 57.149 45.000 0.00 0.00 35.56 4.40
1255 1259 2.623878 TTTGTTAGTCAACTCCGGCA 57.376 45.000 0.00 0.00 35.61 5.69
1256 1260 3.071479 TGATTTGTTAGTCAACTCCGGC 58.929 45.455 0.00 0.00 35.67 6.13
1257 1261 4.755123 ACTTGATTTGTTAGTCAACTCCGG 59.245 41.667 0.00 0.00 35.67 5.14
1258 1262 5.236478 ACACTTGATTTGTTAGTCAACTCCG 59.764 40.000 0.00 0.00 35.67 4.63
1308 1312 4.673580 CGCTTCTTGCTTGCATGTTTCTAT 60.674 41.667 8.07 0.00 40.11 1.98
1324 1328 1.426041 AAACACGTCGTGCGCTTCTT 61.426 50.000 24.80 8.00 46.11 2.52
1386 1390 1.648467 GCCCCGCTTGTGTCATCTTC 61.648 60.000 0.00 0.00 0.00 2.87
1404 1408 1.095807 ATCTTTTTCCTAGCCGCCGC 61.096 55.000 0.00 0.00 0.00 6.53
1412 1416 4.324254 CCAGTGCCACCTATCTTTTTCCTA 60.324 45.833 0.00 0.00 0.00 2.94
1426 1430 0.685097 TACTTGGTCTCCAGTGCCAC 59.315 55.000 0.00 0.00 33.81 5.01
1485 1489 5.465532 TTGCCAATTTCAGCTTCATGTAA 57.534 34.783 0.00 0.00 0.00 2.41
1567 1571 6.035005 GCTTTTCTTCTTGTCACTGGTTTTTC 59.965 38.462 0.00 0.00 0.00 2.29
1688 1695 8.692110 TTATTTCTGATGACAAATGAATGCAC 57.308 30.769 0.00 0.00 0.00 4.57
1887 1895 0.736325 AGGCGTGTCGGAAGATTTCG 60.736 55.000 0.00 0.00 45.19 3.46
1915 1923 1.397672 CCTCTCTCATCTTCTCGGCA 58.602 55.000 0.00 0.00 0.00 5.69
1918 1926 0.673437 GGGCCTCTCTCATCTTCTCG 59.327 60.000 0.84 0.00 0.00 4.04
1952 1960 3.119637 CCGCTTAAAACAAGGTATGGTGG 60.120 47.826 0.00 0.00 0.00 4.61
2036 2044 4.631131 TGATTAGGGAAGTACATGCATCG 58.369 43.478 0.00 0.00 0.00 3.84
2217 2236 2.799126 AATGTGGATTAACGGCCAGA 57.201 45.000 2.24 0.00 34.22 3.86
2267 2286 5.622233 CGTCAAACATGATCTAGTGGTCTCA 60.622 44.000 0.00 0.00 0.00 3.27
2268 2287 4.800993 CGTCAAACATGATCTAGTGGTCTC 59.199 45.833 0.00 0.00 0.00 3.36
2407 2504 9.503399 AGGATTCCTATAGTATTTTTAAAGCGG 57.497 33.333 2.49 0.00 28.47 5.52
2762 4609 4.082026 GCCAACCTTGTCTATTGCTTTGAT 60.082 41.667 0.00 0.00 0.00 2.57
2765 4612 2.228822 CGCCAACCTTGTCTATTGCTTT 59.771 45.455 0.00 0.00 0.00 3.51
2794 4641 2.431683 GGCTGGCCACTGTTGAGA 59.568 61.111 0.00 0.00 35.81 3.27
2849 4696 1.468914 GATTTCCAGTTCCTGCCGTTC 59.531 52.381 0.00 0.00 0.00 3.95
2889 4736 4.660938 GGACGGGGCCAAAGCAGT 62.661 66.667 4.39 0.00 42.56 4.40
2977 4824 1.218875 GACACGCACCATCGTCAACA 61.219 55.000 0.00 0.00 41.21 3.33


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.