Multiple sequence alignment - TraesCS5D01G484000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G484000 chr5D 100.000 2899 0 0 1 2899 520378840 520375942 0.000000e+00 5354.0
1 TraesCS5D01G484000 chr5D 78.571 560 98 11 2203 2756 105028548 105029091 1.650000e-92 350.0
2 TraesCS5D01G484000 chr5D 77.281 537 97 19 2297 2817 474701152 474701679 2.830000e-75 292.0
3 TraesCS5D01G484000 chr5B 92.794 1249 73 10 877 2115 655614760 655613519 0.000000e+00 1792.0
4 TraesCS5D01G484000 chr5B 89.908 545 29 7 331 868 655615349 655614824 0.000000e+00 678.0
5 TraesCS5D01G484000 chr5B 75.806 620 127 17 2293 2897 653780899 653780288 2.830000e-75 292.0
6 TraesCS5D01G484000 chr5B 76.327 490 89 17 2421 2897 698451198 698450723 1.340000e-58 237.0
7 TraesCS5D01G484000 chr5A 95.175 912 27 10 867 1765 648612423 648611516 0.000000e+00 1424.0
8 TraesCS5D01G484000 chr5A 91.176 544 31 8 333 869 648612982 648612449 0.000000e+00 723.0
9 TraesCS5D01G484000 chr5A 93.035 201 13 1 339 538 648614569 648614369 2.830000e-75 292.0
10 TraesCS5D01G484000 chr2B 80.305 655 121 5 2222 2875 741899928 741899281 3.360000e-134 488.0
11 TraesCS5D01G484000 chr1B 82.093 497 83 4 2251 2744 417403412 417403905 1.240000e-113 420.0
12 TraesCS5D01G484000 chr2D 77.704 601 118 13 2302 2891 61283914 61284509 1.280000e-93 353.0
13 TraesCS5D01G484000 chr2D 77.240 558 112 11 2277 2823 130798430 130797877 2.170000e-81 313.0
14 TraesCS5D01G484000 chr2D 77.298 533 108 10 2302 2824 61268127 61268656 4.690000e-78 302.0
15 TraesCS5D01G484000 chr1D 79.719 498 91 7 2296 2789 255485249 255484758 4.600000e-93 351.0
16 TraesCS5D01G484000 chr4B 73.571 280 51 15 2539 2814 518403693 518403953 5.150000e-13 86.1
17 TraesCS5D01G484000 chr4A 75.843 178 37 4 2637 2814 160469700 160469871 5.150000e-13 86.1
18 TraesCS5D01G484000 chr1A 75.978 179 35 6 2637 2814 274638428 274638599 5.150000e-13 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G484000 chr5D 520375942 520378840 2898 True 5354 5354 100.000000 1 2899 1 chr5D.!!$R1 2898
1 TraesCS5D01G484000 chr5D 105028548 105029091 543 False 350 350 78.571000 2203 2756 1 chr5D.!!$F1 553
2 TraesCS5D01G484000 chr5D 474701152 474701679 527 False 292 292 77.281000 2297 2817 1 chr5D.!!$F2 520
3 TraesCS5D01G484000 chr5B 655613519 655615349 1830 True 1235 1792 91.351000 331 2115 2 chr5B.!!$R3 1784
4 TraesCS5D01G484000 chr5B 653780288 653780899 611 True 292 292 75.806000 2293 2897 1 chr5B.!!$R1 604
5 TraesCS5D01G484000 chr5A 648611516 648614569 3053 True 813 1424 93.128667 333 1765 3 chr5A.!!$R1 1432
6 TraesCS5D01G484000 chr2B 741899281 741899928 647 True 488 488 80.305000 2222 2875 1 chr2B.!!$R1 653
7 TraesCS5D01G484000 chr2D 61283914 61284509 595 False 353 353 77.704000 2302 2891 1 chr2D.!!$F2 589
8 TraesCS5D01G484000 chr2D 130797877 130798430 553 True 313 313 77.240000 2277 2823 1 chr2D.!!$R1 546
9 TraesCS5D01G484000 chr2D 61268127 61268656 529 False 302 302 77.298000 2302 2824 1 chr2D.!!$F1 522

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
561 2158 0.033504 GACTCCACACGCTTTCCTCA 59.966 55.0 0.0 0.0 0.0 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2163 3852 0.03496 GGCAACCTCCTCTTCCCTTC 60.035 60.0 0.0 0.0 0.0 3.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 3.663176 GTGCTCAGGCTTGCGCAA 61.663 61.111 23.48 23.48 45.68 4.85
20 21 2.906388 TGCTCAGGCTTGCGCAAA 60.906 55.556 25.01 7.86 41.70 3.68
21 22 2.336088 GCTCAGGCTTGCGCAAAA 59.664 55.556 25.01 2.27 35.16 2.44
22 23 2.018324 GCTCAGGCTTGCGCAAAAC 61.018 57.895 25.01 18.85 35.16 2.43
23 24 1.359833 CTCAGGCTTGCGCAAAACA 59.640 52.632 25.01 0.94 38.10 2.83
24 25 0.038892 CTCAGGCTTGCGCAAAACAT 60.039 50.000 25.01 14.07 38.10 2.71
25 26 1.199789 CTCAGGCTTGCGCAAAACATA 59.800 47.619 25.01 8.97 38.10 2.29
26 27 1.611006 TCAGGCTTGCGCAAAACATAA 59.389 42.857 25.01 0.00 38.10 1.90
27 28 2.230992 TCAGGCTTGCGCAAAACATAAT 59.769 40.909 25.01 3.16 38.10 1.28
28 29 2.995258 CAGGCTTGCGCAAAACATAATT 59.005 40.909 25.01 0.66 38.10 1.40
29 30 3.432933 CAGGCTTGCGCAAAACATAATTT 59.567 39.130 25.01 0.00 38.10 1.82
30 31 4.064388 AGGCTTGCGCAAAACATAATTTT 58.936 34.783 25.01 0.00 38.10 1.82
31 32 5.119898 CAGGCTTGCGCAAAACATAATTTTA 59.880 36.000 25.01 0.00 38.10 1.52
32 33 5.348451 AGGCTTGCGCAAAACATAATTTTAG 59.652 36.000 25.01 8.42 38.10 1.85
33 34 5.015108 GCTTGCGCAAAACATAATTTTAGC 58.985 37.500 25.01 14.90 35.78 3.09
34 35 5.523013 TTGCGCAAAACATAATTTTAGCC 57.477 34.783 22.78 0.00 0.00 3.93
35 36 3.610242 TGCGCAAAACATAATTTTAGCCG 59.390 39.130 8.16 0.00 0.00 5.52
36 37 3.610677 GCGCAAAACATAATTTTAGCCGT 59.389 39.130 0.30 0.00 0.00 5.68
37 38 4.794246 GCGCAAAACATAATTTTAGCCGTA 59.206 37.500 0.30 0.00 0.00 4.02
38 39 5.052633 GCGCAAAACATAATTTTAGCCGTAG 60.053 40.000 0.30 0.00 0.00 3.51
39 40 5.052633 CGCAAAACATAATTTTAGCCGTAGC 60.053 40.000 0.00 0.00 40.32 3.58
40 41 5.231357 GCAAAACATAATTTTAGCCGTAGCC 59.769 40.000 0.00 0.00 41.25 3.93
41 42 4.806342 AACATAATTTTAGCCGTAGCCG 57.194 40.909 0.00 0.00 41.25 5.52
52 53 4.814294 GTAGCCGGGCCGTGTCAG 62.814 72.222 26.32 10.19 0.00 3.51
62 63 1.659794 CCGTGTCAGGCTTTTTGGG 59.340 57.895 0.00 0.00 0.00 4.12
63 64 1.007387 CGTGTCAGGCTTTTTGGGC 60.007 57.895 0.00 0.00 0.00 5.36
64 65 1.455383 CGTGTCAGGCTTTTTGGGCT 61.455 55.000 0.00 0.00 42.97 5.19
65 66 0.752658 GTGTCAGGCTTTTTGGGCTT 59.247 50.000 0.00 0.00 40.17 4.35
66 67 1.039856 TGTCAGGCTTTTTGGGCTTC 58.960 50.000 0.00 0.00 40.17 3.86
67 68 0.039165 GTCAGGCTTTTTGGGCTTCG 60.039 55.000 0.00 0.00 40.17 3.79
68 69 1.178534 TCAGGCTTTTTGGGCTTCGG 61.179 55.000 0.00 0.00 40.17 4.30
69 70 2.048222 GGCTTTTTGGGCTTCGGC 60.048 61.111 0.00 0.00 40.88 5.54
100 101 4.892002 GGCCCGACCCGATATTTT 57.108 55.556 0.00 0.00 0.00 1.82
101 102 3.105187 GGCCCGACCCGATATTTTT 57.895 52.632 0.00 0.00 0.00 1.94
102 103 2.259266 GGCCCGACCCGATATTTTTA 57.741 50.000 0.00 0.00 0.00 1.52
103 104 2.148768 GGCCCGACCCGATATTTTTAG 58.851 52.381 0.00 0.00 0.00 1.85
104 105 1.534163 GCCCGACCCGATATTTTTAGC 59.466 52.381 0.00 0.00 0.00 3.09
105 106 2.809299 GCCCGACCCGATATTTTTAGCT 60.809 50.000 0.00 0.00 0.00 3.32
106 107 3.064931 CCCGACCCGATATTTTTAGCTC 58.935 50.000 0.00 0.00 0.00 4.09
107 108 3.064931 CCGACCCGATATTTTTAGCTCC 58.935 50.000 0.00 0.00 0.00 4.70
108 109 3.493699 CCGACCCGATATTTTTAGCTCCA 60.494 47.826 0.00 0.00 0.00 3.86
109 110 3.741344 CGACCCGATATTTTTAGCTCCAG 59.259 47.826 0.00 0.00 0.00 3.86
110 111 4.065789 GACCCGATATTTTTAGCTCCAGG 58.934 47.826 0.00 0.00 0.00 4.45
111 112 2.814336 CCCGATATTTTTAGCTCCAGGC 59.186 50.000 0.00 0.00 42.19 4.85
136 137 3.860681 GGCCCTGCCCAATGTATG 58.139 61.111 0.00 0.00 44.06 2.39
137 138 2.501602 GGCCCTGCCCAATGTATGC 61.502 63.158 0.00 0.00 44.06 3.14
138 139 2.501602 GCCCTGCCCAATGTATGCC 61.502 63.158 0.00 0.00 0.00 4.40
139 140 1.833934 CCCTGCCCAATGTATGCCC 60.834 63.158 0.00 0.00 0.00 5.36
140 141 1.076118 CCTGCCCAATGTATGCCCA 60.076 57.895 0.00 0.00 0.00 5.36
141 142 1.111116 CCTGCCCAATGTATGCCCAG 61.111 60.000 0.00 0.00 0.00 4.45
142 143 0.106569 CTGCCCAATGTATGCCCAGA 60.107 55.000 0.00 0.00 31.19 3.86
143 144 0.557238 TGCCCAATGTATGCCCAGAT 59.443 50.000 0.00 0.00 0.00 2.90
144 145 1.779700 TGCCCAATGTATGCCCAGATA 59.220 47.619 0.00 0.00 0.00 1.98
145 146 2.379567 TGCCCAATGTATGCCCAGATAT 59.620 45.455 0.00 0.00 0.00 1.63
146 147 3.591079 TGCCCAATGTATGCCCAGATATA 59.409 43.478 0.00 0.00 0.00 0.86
147 148 4.230272 TGCCCAATGTATGCCCAGATATAT 59.770 41.667 0.00 0.00 0.00 0.86
148 149 4.581824 GCCCAATGTATGCCCAGATATATG 59.418 45.833 0.00 0.00 0.00 1.78
149 150 4.581824 CCCAATGTATGCCCAGATATATGC 59.418 45.833 0.00 0.00 0.00 3.14
150 151 4.274214 CCAATGTATGCCCAGATATATGCG 59.726 45.833 0.00 0.00 0.00 4.73
151 152 3.541996 TGTATGCCCAGATATATGCGG 57.458 47.619 0.00 0.00 0.00 5.69
152 153 2.170397 TGTATGCCCAGATATATGCGGG 59.830 50.000 10.59 10.59 42.03 6.13
153 154 1.583556 ATGCCCAGATATATGCGGGA 58.416 50.000 17.02 3.71 41.62 5.14
154 155 0.613260 TGCCCAGATATATGCGGGAC 59.387 55.000 17.02 10.24 41.62 4.46
155 156 0.107654 GCCCAGATATATGCGGGACC 60.108 60.000 17.02 0.70 41.62 4.46
156 157 1.275666 CCCAGATATATGCGGGACCA 58.724 55.000 9.63 0.00 41.62 4.02
157 158 1.628340 CCCAGATATATGCGGGACCAA 59.372 52.381 9.63 0.00 41.62 3.67
158 159 2.615493 CCCAGATATATGCGGGACCAAC 60.615 54.545 9.63 0.00 41.62 3.77
159 160 2.615493 CCAGATATATGCGGGACCAACC 60.615 54.545 0.00 0.00 38.08 3.77
171 172 3.886324 ACCAACCGGTCAAAGTCAA 57.114 47.368 8.04 0.00 44.71 3.18
172 173 2.131776 ACCAACCGGTCAAAGTCAAA 57.868 45.000 8.04 0.00 44.71 2.69
173 174 2.661718 ACCAACCGGTCAAAGTCAAAT 58.338 42.857 8.04 0.00 44.71 2.32
174 175 3.822940 ACCAACCGGTCAAAGTCAAATA 58.177 40.909 8.04 0.00 44.71 1.40
175 176 4.208746 ACCAACCGGTCAAAGTCAAATAA 58.791 39.130 8.04 0.00 44.71 1.40
176 177 4.645588 ACCAACCGGTCAAAGTCAAATAAA 59.354 37.500 8.04 0.00 44.71 1.40
177 178 4.979815 CCAACCGGTCAAAGTCAAATAAAC 59.020 41.667 8.04 0.00 0.00 2.01
178 179 4.841443 ACCGGTCAAAGTCAAATAAACC 57.159 40.909 0.00 0.00 0.00 3.27
179 180 4.208746 ACCGGTCAAAGTCAAATAAACCA 58.791 39.130 0.00 0.00 0.00 3.67
180 181 4.830600 ACCGGTCAAAGTCAAATAAACCAT 59.169 37.500 0.00 0.00 0.00 3.55
181 182 5.303333 ACCGGTCAAAGTCAAATAAACCATT 59.697 36.000 0.00 0.00 0.00 3.16
182 183 6.183360 ACCGGTCAAAGTCAAATAAACCATTT 60.183 34.615 0.00 0.00 37.32 2.32
183 184 6.704050 CCGGTCAAAGTCAAATAAACCATTTT 59.296 34.615 0.00 0.00 34.49 1.82
184 185 7.868415 CCGGTCAAAGTCAAATAAACCATTTTA 59.132 33.333 0.00 0.00 34.49 1.52
185 186 8.911662 CGGTCAAAGTCAAATAAACCATTTTAG 58.088 33.333 0.00 0.00 34.49 1.85
186 187 9.758651 GGTCAAAGTCAAATAAACCATTTTAGT 57.241 29.630 0.00 0.00 34.49 2.24
195 196 9.869757 CAAATAAACCATTTTAGTTTAGGGAGG 57.130 33.333 0.00 0.00 41.57 4.30
196 197 8.603898 AATAAACCATTTTAGTTTAGGGAGGG 57.396 34.615 0.00 0.00 41.57 4.30
197 198 4.603094 ACCATTTTAGTTTAGGGAGGGG 57.397 45.455 0.00 0.00 0.00 4.79
198 199 3.296854 CCATTTTAGTTTAGGGAGGGGC 58.703 50.000 0.00 0.00 0.00 5.80
199 200 3.296854 CATTTTAGTTTAGGGAGGGGCC 58.703 50.000 0.00 0.00 0.00 5.80
200 201 2.062773 TTTAGTTTAGGGAGGGGCCA 57.937 50.000 4.39 0.00 38.95 5.36
201 202 2.062773 TTAGTTTAGGGAGGGGCCAA 57.937 50.000 4.39 0.00 38.95 4.52
202 203 2.062773 TAGTTTAGGGAGGGGCCAAA 57.937 50.000 4.39 0.00 38.95 3.28
203 204 0.408309 AGTTTAGGGAGGGGCCAAAC 59.592 55.000 4.39 6.32 38.95 2.93
204 205 0.408309 GTTTAGGGAGGGGCCAAACT 59.592 55.000 4.39 0.00 38.95 2.66
205 206 1.163408 TTTAGGGAGGGGCCAAACTT 58.837 50.000 4.39 0.00 38.95 2.66
206 207 0.407918 TTAGGGAGGGGCCAAACTTG 59.592 55.000 4.39 0.00 38.95 3.16
207 208 0.774491 TAGGGAGGGGCCAAACTTGT 60.774 55.000 4.39 0.00 38.95 3.16
208 209 1.606601 GGGAGGGGCCAAACTTGTC 60.607 63.158 4.39 0.00 38.95 3.18
209 210 1.460699 GGAGGGGCCAAACTTGTCT 59.539 57.895 4.39 0.00 36.34 3.41
210 211 0.178961 GGAGGGGCCAAACTTGTCTT 60.179 55.000 4.39 0.00 36.34 3.01
211 212 1.704641 GAGGGGCCAAACTTGTCTTT 58.295 50.000 4.39 0.00 0.00 2.52
212 213 2.039418 GAGGGGCCAAACTTGTCTTTT 58.961 47.619 4.39 0.00 0.00 2.27
213 214 2.434336 GAGGGGCCAAACTTGTCTTTTT 59.566 45.455 4.39 0.00 0.00 1.94
241 242 3.799137 TTTGAAACGGCTAGCTTAACG 57.201 42.857 15.72 12.05 0.00 3.18
242 243 2.728690 TGAAACGGCTAGCTTAACGA 57.271 45.000 15.72 0.00 0.00 3.85
243 244 2.602878 TGAAACGGCTAGCTTAACGAG 58.397 47.619 15.72 0.61 0.00 4.18
244 245 2.029649 TGAAACGGCTAGCTTAACGAGT 60.030 45.455 15.72 3.13 0.00 4.18
245 246 2.738013 AACGGCTAGCTTAACGAGTT 57.262 45.000 15.72 7.06 0.00 3.01
246 247 3.855689 AACGGCTAGCTTAACGAGTTA 57.144 42.857 15.72 0.00 0.00 2.24
247 248 4.382345 AACGGCTAGCTTAACGAGTTAT 57.618 40.909 15.72 0.00 0.00 1.89
248 249 3.962423 ACGGCTAGCTTAACGAGTTATC 58.038 45.455 15.72 0.00 0.00 1.75
249 250 3.379372 ACGGCTAGCTTAACGAGTTATCA 59.621 43.478 15.72 0.00 0.00 2.15
250 251 3.975670 CGGCTAGCTTAACGAGTTATCAG 59.024 47.826 15.72 0.00 0.00 2.90
251 252 4.299978 GGCTAGCTTAACGAGTTATCAGG 58.700 47.826 15.72 0.00 0.00 3.86
252 253 4.037684 GGCTAGCTTAACGAGTTATCAGGA 59.962 45.833 15.72 0.00 0.00 3.86
253 254 5.279056 GGCTAGCTTAACGAGTTATCAGGAT 60.279 44.000 15.72 0.00 0.00 3.24
254 255 5.631512 GCTAGCTTAACGAGTTATCAGGATG 59.368 44.000 7.70 0.00 37.54 3.51
255 256 4.372656 AGCTTAACGAGTTATCAGGATGC 58.627 43.478 0.00 0.00 34.76 3.91
256 257 4.119862 GCTTAACGAGTTATCAGGATGCA 58.880 43.478 0.00 0.00 34.76 3.96
257 258 4.570772 GCTTAACGAGTTATCAGGATGCAA 59.429 41.667 0.00 0.00 34.76 4.08
258 259 5.277058 GCTTAACGAGTTATCAGGATGCAAG 60.277 44.000 0.00 0.00 34.76 4.01
259 260 3.895232 ACGAGTTATCAGGATGCAAGT 57.105 42.857 0.00 0.00 34.76 3.16
260 261 4.207891 ACGAGTTATCAGGATGCAAGTT 57.792 40.909 0.00 0.00 34.76 2.66
261 262 3.935203 ACGAGTTATCAGGATGCAAGTTG 59.065 43.478 0.00 0.00 34.76 3.16
262 263 3.935203 CGAGTTATCAGGATGCAAGTTGT 59.065 43.478 4.48 0.00 34.76 3.32
263 264 4.393062 CGAGTTATCAGGATGCAAGTTGTT 59.607 41.667 4.48 0.00 34.76 2.83
264 265 5.446473 CGAGTTATCAGGATGCAAGTTGTTC 60.446 44.000 4.48 2.31 34.76 3.18
265 266 4.393062 AGTTATCAGGATGCAAGTTGTTCG 59.607 41.667 4.48 0.00 34.76 3.95
266 267 2.542020 TCAGGATGCAAGTTGTTCGA 57.458 45.000 4.48 0.00 34.76 3.71
267 268 3.057969 TCAGGATGCAAGTTGTTCGAT 57.942 42.857 4.48 0.00 34.76 3.59
268 269 3.411446 TCAGGATGCAAGTTGTTCGATT 58.589 40.909 4.48 0.00 34.76 3.34
269 270 3.820467 TCAGGATGCAAGTTGTTCGATTT 59.180 39.130 4.48 0.00 34.76 2.17
270 271 4.278170 TCAGGATGCAAGTTGTTCGATTTT 59.722 37.500 4.48 0.00 34.76 1.82
271 272 5.471797 TCAGGATGCAAGTTGTTCGATTTTA 59.528 36.000 4.48 0.00 34.76 1.52
272 273 6.016693 TCAGGATGCAAGTTGTTCGATTTTAA 60.017 34.615 4.48 0.00 34.76 1.52
273 274 6.640499 CAGGATGCAAGTTGTTCGATTTTAAA 59.360 34.615 4.48 0.00 0.00 1.52
274 275 6.863126 AGGATGCAAGTTGTTCGATTTTAAAG 59.137 34.615 4.48 0.00 0.00 1.85
275 276 6.640907 GGATGCAAGTTGTTCGATTTTAAAGT 59.359 34.615 4.48 0.00 0.00 2.66
276 277 7.169140 GGATGCAAGTTGTTCGATTTTAAAGTT 59.831 33.333 4.48 0.00 0.00 2.66
277 278 7.820044 TGCAAGTTGTTCGATTTTAAAGTTT 57.180 28.000 4.48 0.00 0.00 2.66
278 279 8.912787 TGCAAGTTGTTCGATTTTAAAGTTTA 57.087 26.923 4.48 0.00 0.00 2.01
279 280 9.522804 TGCAAGTTGTTCGATTTTAAAGTTTAT 57.477 25.926 4.48 0.00 0.00 1.40
280 281 9.777843 GCAAGTTGTTCGATTTTAAAGTTTATG 57.222 29.630 4.48 0.00 0.00 1.90
281 282 9.777843 CAAGTTGTTCGATTTTAAAGTTTATGC 57.222 29.630 0.00 0.00 0.00 3.14
282 283 9.522804 AAGTTGTTCGATTTTAAAGTTTATGCA 57.477 25.926 0.00 0.00 0.00 3.96
283 284 9.691362 AGTTGTTCGATTTTAAAGTTTATGCAT 57.309 25.926 3.79 3.79 0.00 3.96
284 285 9.726034 GTTGTTCGATTTTAAAGTTTATGCATG 57.274 29.630 10.16 0.00 0.00 4.06
285 286 9.684448 TTGTTCGATTTTAAAGTTTATGCATGA 57.316 25.926 10.16 0.00 0.00 3.07
286 287 9.684448 TGTTCGATTTTAAAGTTTATGCATGAA 57.316 25.926 10.16 4.23 0.00 2.57
293 294 9.770097 TTTTAAAGTTTATGCATGAATTCCACA 57.230 25.926 10.16 0.00 0.00 4.17
294 295 8.755696 TTAAAGTTTATGCATGAATTCCACAC 57.244 30.769 10.16 0.00 0.00 3.82
295 296 6.594788 AAGTTTATGCATGAATTCCACACT 57.405 33.333 10.16 0.00 0.00 3.55
296 297 6.594788 AGTTTATGCATGAATTCCACACTT 57.405 33.333 10.16 0.00 0.00 3.16
297 298 6.624423 AGTTTATGCATGAATTCCACACTTC 58.376 36.000 10.16 0.00 0.00 3.01
298 299 3.770263 ATGCATGAATTCCACACTTCG 57.230 42.857 0.00 0.00 0.00 3.79
299 300 2.503331 TGCATGAATTCCACACTTCGT 58.497 42.857 2.27 0.00 0.00 3.85
300 301 2.226200 TGCATGAATTCCACACTTCGTG 59.774 45.455 2.27 0.00 45.92 4.35
340 341 1.809133 TTGAGGGGTACACTTGGTGA 58.191 50.000 4.62 0.00 36.96 4.02
350 351 5.279809 GGGTACACTTGGTGATTAGTTGAGA 60.280 44.000 4.62 0.00 36.96 3.27
416 417 2.622436 GGGAAACGAAGTGAGATCTGG 58.378 52.381 0.00 0.00 45.00 3.86
475 2062 0.252239 AGAGGGCCCATTTTTGTCCC 60.252 55.000 27.56 0.00 37.24 4.46
560 2157 0.318762 AGACTCCACACGCTTTCCTC 59.681 55.000 0.00 0.00 0.00 3.71
561 2158 0.033504 GACTCCACACGCTTTCCTCA 59.966 55.000 0.00 0.00 0.00 3.86
562 2159 0.249911 ACTCCACACGCTTTCCTCAC 60.250 55.000 0.00 0.00 0.00 3.51
635 2232 2.287547 GCAAAGAAACATCACCGAAGCA 60.288 45.455 0.00 0.00 0.00 3.91
636 2233 3.558505 CAAAGAAACATCACCGAAGCAG 58.441 45.455 0.00 0.00 0.00 4.24
667 2265 1.959042 CTGGGTTCGAATCCATCCTG 58.041 55.000 29.73 14.84 38.80 3.86
668 2266 1.486310 CTGGGTTCGAATCCATCCTGA 59.514 52.381 29.73 6.67 38.80 3.86
680 2278 6.238211 CGAATCCATCCTGATTGTTTACTCAC 60.238 42.308 0.00 0.00 35.15 3.51
693 2291 5.593968 TGTTTACTCACTAAGCAACTCGAA 58.406 37.500 0.00 0.00 0.00 3.71
697 2295 5.140747 ACTCACTAAGCAACTCGAAGATT 57.859 39.130 0.00 0.00 33.89 2.40
757 2358 1.258445 ACTCCCCTGCTTCCACGTAG 61.258 60.000 0.00 0.00 0.00 3.51
941 2604 0.399075 AAACATCCCGGTCCGAAACT 59.601 50.000 14.39 0.00 0.00 2.66
1341 3026 3.997021 TCCAAGCTCGTTGATTTCTTCTC 59.003 43.478 0.00 0.00 38.60 2.87
1427 3112 2.590575 CACGCGGTGGAAGGTGTT 60.591 61.111 12.47 0.00 0.00 3.32
1766 3451 1.672881 GATGCACTACCAATGACCAGC 59.327 52.381 0.00 0.00 0.00 4.85
1827 3512 0.631753 TACTGCTAGCTCCCAGGAGT 59.368 55.000 17.23 12.96 45.38 3.85
1832 3517 0.821711 CTAGCTCCCAGGAGTCTCCG 60.822 65.000 13.41 8.30 42.75 4.63
1834 3519 2.419739 GCTCCCAGGAGTCTCCGAC 61.420 68.421 13.41 0.00 42.75 4.79
1838 3523 1.454111 CCAGGAGTCTCCGACGGAT 60.454 63.158 18.71 1.79 42.75 4.18
1841 3526 0.323542 AGGAGTCTCCGACGGATTGT 60.324 55.000 18.71 4.24 42.75 2.71
1844 3529 1.201647 GAGTCTCCGACGGATTGTTGA 59.798 52.381 18.71 7.93 37.67 3.18
1847 3532 1.067846 TCTCCGACGGATTGTTGAGTG 60.068 52.381 18.71 2.08 33.36 3.51
1852 3537 1.455786 GACGGATTGTTGAGTGTGTCG 59.544 52.381 0.00 0.00 0.00 4.35
1872 3559 2.804572 CGATGCTGTGTAGGGGAATCAG 60.805 54.545 0.00 0.00 0.00 2.90
1884 3571 1.409241 GGGAATCAGGAATGCTCTGCA 60.409 52.381 0.00 0.00 44.86 4.41
1905 3592 6.151004 TGCATTTGTTGAGTTGATACATGTG 58.849 36.000 9.11 0.00 0.00 3.21
1912 3599 1.277842 AGTTGATACATGTGTCGGCCA 59.722 47.619 16.62 0.00 0.00 5.36
1914 3601 2.238942 TGATACATGTGTCGGCCATC 57.761 50.000 16.62 6.81 0.00 3.51
1938 3625 2.159043 AGCCTGATATGACGTTGAGGTG 60.159 50.000 0.00 0.00 0.00 4.00
1981 3668 1.739466 TGATCCGCTTCAGCAATGTTC 59.261 47.619 0.00 0.00 42.21 3.18
2001 3688 3.240134 GAGGGCACTCGGTTGAGCA 62.240 63.158 0.00 0.00 46.69 4.26
2007 3694 0.868406 CACTCGGTTGAGCACCTTTC 59.132 55.000 0.00 0.00 46.69 2.62
2021 3708 3.230134 CACCTTTCCTTGGTCCAATTCA 58.770 45.455 4.34 0.00 35.28 2.57
2023 3710 3.117131 ACCTTTCCTTGGTCCAATTCAGT 60.117 43.478 4.34 0.00 31.03 3.41
2059 3748 0.609131 CAATGCGGACCCTTGAACCT 60.609 55.000 0.00 0.00 0.00 3.50
2070 3759 1.269726 CCTTGAACCTTGCGCATTTGT 60.270 47.619 12.75 5.97 0.00 2.83
2072 3761 1.317613 TGAACCTTGCGCATTTGTCT 58.682 45.000 12.75 0.23 0.00 3.41
2080 3769 0.310543 GCGCATTTGTCTGAACCACA 59.689 50.000 0.30 0.00 0.00 4.17
2098 3787 1.014044 CATGGTCCCGACGTGTTCTG 61.014 60.000 0.00 0.00 0.00 3.02
2099 3788 2.737376 GGTCCCGACGTGTTCTGC 60.737 66.667 0.00 0.00 0.00 4.26
2124 3813 2.983229 CAAGCAGGCTTGTATCAGTCT 58.017 47.619 22.52 0.00 45.91 3.24
2126 3815 1.905215 AGCAGGCTTGTATCAGTCTGT 59.095 47.619 4.35 0.00 46.60 3.41
2127 3816 2.093764 AGCAGGCTTGTATCAGTCTGTC 60.094 50.000 4.35 0.00 46.60 3.51
2128 3817 2.534298 CAGGCTTGTATCAGTCTGTCG 58.466 52.381 0.00 0.00 40.99 4.35
2129 3818 2.164422 CAGGCTTGTATCAGTCTGTCGA 59.836 50.000 0.00 0.00 40.99 4.20
2130 3819 2.425312 AGGCTTGTATCAGTCTGTCGAG 59.575 50.000 0.00 3.21 0.00 4.04
2131 3820 2.189342 GCTTGTATCAGTCTGTCGAGC 58.811 52.381 14.04 14.04 0.00 5.03
2132 3821 2.445316 CTTGTATCAGTCTGTCGAGCG 58.555 52.381 0.00 0.00 0.00 5.03
2133 3822 0.733150 TGTATCAGTCTGTCGAGCGG 59.267 55.000 0.00 0.00 0.00 5.52
2134 3823 0.733729 GTATCAGTCTGTCGAGCGGT 59.266 55.000 0.00 0.00 0.00 5.68
2135 3824 1.015109 TATCAGTCTGTCGAGCGGTC 58.985 55.000 4.06 4.06 0.00 4.79
2136 3825 1.658686 ATCAGTCTGTCGAGCGGTCC 61.659 60.000 9.39 0.00 0.00 4.46
2137 3826 3.432588 AGTCTGTCGAGCGGTCCG 61.433 66.667 6.99 6.99 0.00 4.79
2138 3827 3.429141 GTCTGTCGAGCGGTCCGA 61.429 66.667 17.49 7.03 0.00 4.55
2139 3828 2.670592 TCTGTCGAGCGGTCCGAA 60.671 61.111 17.49 0.00 37.81 4.30
2140 3829 2.044555 TCTGTCGAGCGGTCCGAAT 61.045 57.895 17.49 1.46 37.81 3.34
2141 3830 1.874019 CTGTCGAGCGGTCCGAATG 60.874 63.158 17.49 2.84 37.81 2.67
2142 3831 2.181021 GTCGAGCGGTCCGAATGT 59.819 61.111 17.49 0.00 37.81 2.71
2143 3832 2.158959 GTCGAGCGGTCCGAATGTG 61.159 63.158 17.49 0.00 37.81 3.21
2144 3833 2.126071 CGAGCGGTCCGAATGTGT 60.126 61.111 17.49 0.00 0.00 3.72
2145 3834 1.736645 CGAGCGGTCCGAATGTGTT 60.737 57.895 17.49 0.00 0.00 3.32
2146 3835 1.289109 CGAGCGGTCCGAATGTGTTT 61.289 55.000 17.49 0.00 0.00 2.83
2147 3836 0.872388 GAGCGGTCCGAATGTGTTTT 59.128 50.000 17.49 0.00 0.00 2.43
2148 3837 2.070783 GAGCGGTCCGAATGTGTTTTA 58.929 47.619 17.49 0.00 0.00 1.52
2149 3838 2.073816 AGCGGTCCGAATGTGTTTTAG 58.926 47.619 17.49 0.00 0.00 1.85
2150 3839 1.802365 GCGGTCCGAATGTGTTTTAGT 59.198 47.619 17.49 0.00 0.00 2.24
2151 3840 2.995258 GCGGTCCGAATGTGTTTTAGTA 59.005 45.455 17.49 0.00 0.00 1.82
2152 3841 3.432933 GCGGTCCGAATGTGTTTTAGTAA 59.567 43.478 17.49 0.00 0.00 2.24
2153 3842 4.083908 GCGGTCCGAATGTGTTTTAGTAAA 60.084 41.667 17.49 0.00 0.00 2.01
2154 3843 5.376537 CGGTCCGAATGTGTTTTAGTAAAC 58.623 41.667 4.91 0.00 43.17 2.01
2155 3844 5.615325 CGGTCCGAATGTGTTTTAGTAAACC 60.615 44.000 4.91 0.00 42.39 3.27
2156 3845 5.376537 GTCCGAATGTGTTTTAGTAAACCG 58.623 41.667 0.00 0.00 42.39 4.44
2157 3846 5.177327 GTCCGAATGTGTTTTAGTAAACCGA 59.823 40.000 0.00 0.00 42.39 4.69
2158 3847 5.757320 TCCGAATGTGTTTTAGTAAACCGAA 59.243 36.000 0.00 0.00 42.39 4.30
2159 3848 6.073657 TCCGAATGTGTTTTAGTAAACCGAAG 60.074 38.462 0.00 0.00 42.39 3.79
2160 3849 6.073657 CCGAATGTGTTTTAGTAAACCGAAGA 60.074 38.462 0.00 0.00 42.39 2.87
2161 3850 6.788930 CGAATGTGTTTTAGTAAACCGAAGAC 59.211 38.462 0.00 0.00 42.39 3.01
2162 3851 7.517101 CGAATGTGTTTTAGTAAACCGAAGACA 60.517 37.037 0.00 0.00 42.39 3.41
2163 3852 6.592798 TGTGTTTTAGTAAACCGAAGACAG 57.407 37.500 0.00 0.00 42.39 3.51
2164 3853 6.339730 TGTGTTTTAGTAAACCGAAGACAGA 58.660 36.000 0.00 0.00 42.39 3.41
2165 3854 6.817641 TGTGTTTTAGTAAACCGAAGACAGAA 59.182 34.615 0.00 0.00 42.39 3.02
2166 3855 7.010738 TGTGTTTTAGTAAACCGAAGACAGAAG 59.989 37.037 0.00 0.00 42.39 2.85
2167 3856 6.480981 TGTTTTAGTAAACCGAAGACAGAAGG 59.519 38.462 0.00 0.00 42.39 3.46
2168 3857 3.679824 AGTAAACCGAAGACAGAAGGG 57.320 47.619 0.00 0.00 0.00 3.95
2169 3858 3.236896 AGTAAACCGAAGACAGAAGGGA 58.763 45.455 0.00 0.00 0.00 4.20
2170 3859 3.644738 AGTAAACCGAAGACAGAAGGGAA 59.355 43.478 0.00 0.00 0.00 3.97
2171 3860 2.841442 AACCGAAGACAGAAGGGAAG 57.159 50.000 0.00 0.00 0.00 3.46
2172 3861 2.011122 ACCGAAGACAGAAGGGAAGA 57.989 50.000 0.00 0.00 0.00 2.87
2173 3862 1.896465 ACCGAAGACAGAAGGGAAGAG 59.104 52.381 0.00 0.00 0.00 2.85
2174 3863 1.205893 CCGAAGACAGAAGGGAAGAGG 59.794 57.143 0.00 0.00 0.00 3.69
2175 3864 2.171840 CGAAGACAGAAGGGAAGAGGA 58.828 52.381 0.00 0.00 0.00 3.71
2176 3865 2.165437 CGAAGACAGAAGGGAAGAGGAG 59.835 54.545 0.00 0.00 0.00 3.69
2177 3866 2.246091 AGACAGAAGGGAAGAGGAGG 57.754 55.000 0.00 0.00 0.00 4.30
2178 3867 1.435168 AGACAGAAGGGAAGAGGAGGT 59.565 52.381 0.00 0.00 0.00 3.85
2179 3868 2.158081 AGACAGAAGGGAAGAGGAGGTT 60.158 50.000 0.00 0.00 0.00 3.50
2180 3869 1.981495 ACAGAAGGGAAGAGGAGGTTG 59.019 52.381 0.00 0.00 0.00 3.77
2181 3870 0.988063 AGAAGGGAAGAGGAGGTTGC 59.012 55.000 0.00 0.00 0.00 4.17
2182 3871 0.034960 GAAGGGAAGAGGAGGTTGCC 60.035 60.000 0.00 0.00 35.69 4.52
2183 3872 1.842381 AAGGGAAGAGGAGGTTGCCG 61.842 60.000 0.00 0.00 40.22 5.69
2184 3873 2.269241 GGAAGAGGAGGTTGCCGG 59.731 66.667 0.00 0.00 0.00 6.13
2185 3874 2.436824 GAAGAGGAGGTTGCCGGC 60.437 66.667 22.73 22.73 0.00 6.13
2186 3875 4.394712 AAGAGGAGGTTGCCGGCG 62.395 66.667 23.90 0.00 0.00 6.46
2188 3877 4.699522 GAGGAGGTTGCCGGCGTT 62.700 66.667 23.90 6.74 0.00 4.84
2189 3878 4.699522 AGGAGGTTGCCGGCGTTC 62.700 66.667 23.90 15.68 0.00 3.95
2199 3888 3.041940 CGGCGTTCGGACTGCTTT 61.042 61.111 0.00 0.00 34.75 3.51
2200 3889 2.861006 GGCGTTCGGACTGCTTTC 59.139 61.111 9.88 0.00 0.00 2.62
2201 3890 1.959226 GGCGTTCGGACTGCTTTCA 60.959 57.895 9.88 0.00 0.00 2.69
2212 3901 0.877071 CTGCTTTCACGTCTGGCAAT 59.123 50.000 0.00 0.00 32.43 3.56
2213 3902 0.874390 TGCTTTCACGTCTGGCAATC 59.126 50.000 0.00 0.00 0.00 2.67
2214 3903 0.169009 GCTTTCACGTCTGGCAATCC 59.831 55.000 0.00 0.00 0.00 3.01
2235 3924 1.612146 CCCCACCCAAAACCATCCC 60.612 63.158 0.00 0.00 0.00 3.85
2265 3954 3.986006 TGCTTTCTCGCCCGACGT 61.986 61.111 0.00 0.00 44.19 4.34
2269 3958 3.277211 TTTCTCGCCCGACGTCAGG 62.277 63.158 17.16 15.43 44.19 3.86
2275 3964 3.680786 CCCGACGTCAGGTGCTCA 61.681 66.667 17.16 0.00 0.00 4.26
2283 3972 1.873486 CGTCAGGTGCTCACATTGACA 60.873 52.381 23.68 0.00 42.47 3.58
2295 3984 2.231478 CACATTGACACCGGTCTAGAGT 59.769 50.000 2.59 0.00 44.61 3.24
2307 3996 2.678934 TAGAGTGGACGCGGCCTT 60.679 61.111 34.65 21.31 0.00 4.35
2332 4021 4.101790 CGGCATTGAAGCGGCGTT 62.102 61.111 9.37 0.00 45.16 4.84
2467 4157 1.475403 CTACTCCGGTCACATGTCCT 58.525 55.000 0.00 0.00 0.00 3.85
2470 4160 1.420138 ACTCCGGTCACATGTCCTTTT 59.580 47.619 0.00 0.00 0.00 2.27
2484 4174 4.947147 TTTTGCGAGCCAGCGGGT 62.947 61.111 4.36 1.36 40.67 5.28
2500 4190 1.805345 CGGGTATTAAACACAACGCCA 59.195 47.619 0.00 0.00 0.00 5.69
2517 4207 0.900647 CCAGTTGACTCCTCCCGTCT 60.901 60.000 0.00 0.00 32.70 4.18
2525 4215 1.379977 TCCTCCCGTCTACCTGCTG 60.380 63.158 0.00 0.00 0.00 4.41
2537 4228 1.890876 ACCTGCTGTTAAACGATGCA 58.109 45.000 0.00 0.00 0.00 3.96
2567 4259 1.762708 CAAGAACCACACCACACCTT 58.237 50.000 0.00 0.00 0.00 3.50
2580 4272 0.325296 ACACCTTCGCTCCCCATCTA 60.325 55.000 0.00 0.00 0.00 1.98
2581 4273 1.051812 CACCTTCGCTCCCCATCTAT 58.948 55.000 0.00 0.00 0.00 1.98
2608 4300 3.264193 TGCACCATATTCTCCACACTCTT 59.736 43.478 0.00 0.00 0.00 2.85
2613 4305 5.426509 ACCATATTCTCCACACTCTTCATGA 59.573 40.000 0.00 0.00 0.00 3.07
2619 4311 2.905736 TCCACACTCTTCATGACATCCA 59.094 45.455 0.00 0.00 0.00 3.41
2634 4326 1.205655 CATCCAACGAGCAGGAAGAGA 59.794 52.381 0.00 0.00 37.48 3.10
2717 4409 2.494530 CGCTGCTCTACCTCCCTCC 61.495 68.421 0.00 0.00 0.00 4.30
2718 4410 1.075600 GCTGCTCTACCTCCCTCCT 60.076 63.158 0.00 0.00 0.00 3.69
2733 4425 2.022240 CTCCTTGCTCTAGGCCGTCC 62.022 65.000 0.00 0.00 40.92 4.79
2744 4445 4.540735 GCCGTCCGTACCATGGGG 62.541 72.222 18.09 8.03 41.29 4.96
2765 4466 2.401766 GGCTCCAAGTCGGCATGTG 61.402 63.158 0.00 0.00 33.14 3.21
2789 4490 2.956987 CAACTTGCCGCTCCAAGG 59.043 61.111 14.97 0.00 44.98 3.61
2817 4518 0.173708 GGAGGAGTGGCGAGTTACTG 59.826 60.000 0.00 0.00 0.00 2.74
2818 4519 0.889306 GAGGAGTGGCGAGTTACTGT 59.111 55.000 0.00 0.00 0.00 3.55
2824 4525 1.895238 GGCGAGTTACTGTAGGCCA 59.105 57.895 5.01 0.00 40.24 5.36
2825 4526 0.248289 GGCGAGTTACTGTAGGCCAA 59.752 55.000 5.01 0.00 40.24 4.52
2826 4527 1.134491 GGCGAGTTACTGTAGGCCAAT 60.134 52.381 5.01 0.00 40.24 3.16
2830 4531 3.121544 GAGTTACTGTAGGCCAATACGC 58.878 50.000 5.01 0.00 0.00 4.42
2831 4532 2.498481 AGTTACTGTAGGCCAATACGCA 59.502 45.455 5.01 0.00 0.00 5.24
2872 4573 1.879380 CAATGTGGTTGTCATGGACGT 59.121 47.619 0.00 0.00 34.95 4.34
2875 4576 1.072332 TGGTTGTCATGGACGTGGG 59.928 57.895 0.00 0.00 34.95 4.61
2891 4592 2.506438 GGCGTGTCGTACAGCTCC 60.506 66.667 0.00 0.00 0.00 4.70
2892 4593 2.567049 GCGTGTCGTACAGCTCCT 59.433 61.111 0.00 0.00 0.00 3.69
2894 4595 1.924320 GCGTGTCGTACAGCTCCTCT 61.924 60.000 0.00 0.00 0.00 3.69
2895 4596 0.097325 CGTGTCGTACAGCTCCTCTC 59.903 60.000 0.00 0.00 0.00 3.20
2896 4597 0.097325 GTGTCGTACAGCTCCTCTCG 59.903 60.000 0.00 0.00 0.00 4.04
2897 4598 1.062845 GTCGTACAGCTCCTCTCGC 59.937 63.158 0.00 0.00 0.00 5.03
2898 4599 2.023461 CGTACAGCTCCTCTCGCG 59.977 66.667 0.00 0.00 0.00 5.87
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 5.550070 GGCTAAAATTATGTTTTGCGCAAG 58.450 37.500 23.68 7.74 39.26 4.01
12 13 4.090642 CGGCTAAAATTATGTTTTGCGCAA 59.909 37.500 21.02 21.02 39.26 4.85
13 14 3.610242 CGGCTAAAATTATGTTTTGCGCA 59.390 39.130 5.66 5.66 39.26 6.09
14 15 3.610677 ACGGCTAAAATTATGTTTTGCGC 59.389 39.130 0.00 0.00 39.26 6.09
15 16 5.052633 GCTACGGCTAAAATTATGTTTTGCG 60.053 40.000 0.00 0.00 39.26 4.85
16 17 5.231357 GGCTACGGCTAAAATTATGTTTTGC 59.769 40.000 0.00 0.00 38.15 3.68
17 18 5.454232 CGGCTACGGCTAAAATTATGTTTTG 59.546 40.000 0.00 0.00 38.73 2.44
18 19 5.575019 CGGCTACGGCTAAAATTATGTTTT 58.425 37.500 0.00 0.00 38.73 2.43
19 20 5.164606 CGGCTACGGCTAAAATTATGTTT 57.835 39.130 0.00 0.00 38.73 2.83
20 21 4.806342 CGGCTACGGCTAAAATTATGTT 57.194 40.909 0.00 0.00 38.73 2.71
35 36 4.814294 CTGACACGGCCCGGCTAC 62.814 72.222 8.57 0.00 0.00 3.58
44 45 1.659794 CCCAAAAAGCCTGACACGG 59.340 57.895 0.00 0.00 0.00 4.94
45 46 1.007387 GCCCAAAAAGCCTGACACG 60.007 57.895 0.00 0.00 0.00 4.49
46 47 0.752658 AAGCCCAAAAAGCCTGACAC 59.247 50.000 0.00 0.00 0.00 3.67
47 48 1.039856 GAAGCCCAAAAAGCCTGACA 58.960 50.000 0.00 0.00 0.00 3.58
48 49 0.039165 CGAAGCCCAAAAAGCCTGAC 60.039 55.000 0.00 0.00 0.00 3.51
49 50 1.178534 CCGAAGCCCAAAAAGCCTGA 61.179 55.000 0.00 0.00 0.00 3.86
50 51 1.290009 CCGAAGCCCAAAAAGCCTG 59.710 57.895 0.00 0.00 0.00 4.85
51 52 2.574018 GCCGAAGCCCAAAAAGCCT 61.574 57.895 0.00 0.00 0.00 4.58
52 53 2.048222 GCCGAAGCCCAAAAAGCC 60.048 61.111 0.00 0.00 0.00 4.35
81 82 2.669777 AAAATATCGGGTCGGGCCGG 62.670 60.000 27.98 10.15 38.44 6.13
82 83 0.816421 AAAAATATCGGGTCGGGCCG 60.816 55.000 22.51 22.51 38.44 6.13
83 84 2.148768 CTAAAAATATCGGGTCGGGCC 58.851 52.381 0.00 0.00 0.00 5.80
84 85 1.534163 GCTAAAAATATCGGGTCGGGC 59.466 52.381 0.00 0.00 0.00 6.13
85 86 3.064931 GAGCTAAAAATATCGGGTCGGG 58.935 50.000 0.00 0.00 0.00 5.14
86 87 3.064931 GGAGCTAAAAATATCGGGTCGG 58.935 50.000 0.00 0.00 0.00 4.79
87 88 3.724374 TGGAGCTAAAAATATCGGGTCG 58.276 45.455 0.00 0.00 0.00 4.79
88 89 4.065789 CCTGGAGCTAAAAATATCGGGTC 58.934 47.826 0.00 0.00 0.00 4.46
89 90 3.747708 GCCTGGAGCTAAAAATATCGGGT 60.748 47.826 0.00 0.00 38.99 5.28
90 91 2.814336 GCCTGGAGCTAAAAATATCGGG 59.186 50.000 0.00 0.00 38.99 5.14
120 121 2.501602 GGCATACATTGGGCAGGGC 61.502 63.158 0.00 0.00 0.00 5.19
121 122 1.833934 GGGCATACATTGGGCAGGG 60.834 63.158 0.00 0.00 0.00 4.45
122 123 1.076118 TGGGCATACATTGGGCAGG 60.076 57.895 0.00 0.00 0.00 4.85
123 124 0.106569 TCTGGGCATACATTGGGCAG 60.107 55.000 0.00 0.00 0.00 4.85
124 125 0.557238 ATCTGGGCATACATTGGGCA 59.443 50.000 0.00 0.00 0.00 5.36
125 126 2.584835 TATCTGGGCATACATTGGGC 57.415 50.000 0.00 0.00 0.00 5.36
126 127 4.581824 GCATATATCTGGGCATACATTGGG 59.418 45.833 0.00 0.00 0.00 4.12
127 128 4.274214 CGCATATATCTGGGCATACATTGG 59.726 45.833 0.00 0.00 0.00 3.16
128 129 4.274214 CCGCATATATCTGGGCATACATTG 59.726 45.833 0.13 0.00 0.00 2.82
129 130 4.454678 CCGCATATATCTGGGCATACATT 58.545 43.478 0.13 0.00 0.00 2.71
130 131 3.181451 CCCGCATATATCTGGGCATACAT 60.181 47.826 5.97 0.00 34.25 2.29
131 132 2.170397 CCCGCATATATCTGGGCATACA 59.830 50.000 5.97 0.00 34.25 2.29
132 133 2.434336 TCCCGCATATATCTGGGCATAC 59.566 50.000 12.30 0.00 41.65 2.39
133 134 2.434336 GTCCCGCATATATCTGGGCATA 59.566 50.000 12.30 0.00 41.65 3.14
134 135 1.210478 GTCCCGCATATATCTGGGCAT 59.790 52.381 12.30 0.00 41.65 4.40
135 136 0.613260 GTCCCGCATATATCTGGGCA 59.387 55.000 12.30 2.00 41.65 5.36
136 137 0.107654 GGTCCCGCATATATCTGGGC 60.108 60.000 12.30 8.48 41.65 5.36
137 138 1.275666 TGGTCCCGCATATATCTGGG 58.724 55.000 11.24 11.24 43.36 4.45
138 139 2.615493 GGTTGGTCCCGCATATATCTGG 60.615 54.545 0.00 0.00 0.00 3.86
139 140 2.699954 GGTTGGTCCCGCATATATCTG 58.300 52.381 0.00 0.00 0.00 2.90
140 141 1.275291 CGGTTGGTCCCGCATATATCT 59.725 52.381 0.00 0.00 41.78 1.98
141 142 1.674817 CCGGTTGGTCCCGCATATATC 60.675 57.143 0.00 0.00 46.71 1.63
142 143 0.323629 CCGGTTGGTCCCGCATATAT 59.676 55.000 0.00 0.00 46.71 0.86
143 144 1.749665 CCGGTTGGTCCCGCATATA 59.250 57.895 0.00 0.00 46.71 0.86
144 145 2.508928 CCGGTTGGTCCCGCATAT 59.491 61.111 0.00 0.00 46.71 1.78
154 155 4.839668 TTATTTGACTTTGACCGGTTGG 57.160 40.909 9.42 1.74 42.84 3.77
155 156 4.979815 GGTTTATTTGACTTTGACCGGTTG 59.020 41.667 9.42 2.12 0.00 3.77
156 157 4.645588 TGGTTTATTTGACTTTGACCGGTT 59.354 37.500 9.42 0.00 0.00 4.44
157 158 4.208746 TGGTTTATTTGACTTTGACCGGT 58.791 39.130 6.92 6.92 0.00 5.28
158 159 4.839668 TGGTTTATTTGACTTTGACCGG 57.160 40.909 0.00 0.00 0.00 5.28
159 160 7.707774 AAAATGGTTTATTTGACTTTGACCG 57.292 32.000 0.00 0.00 38.93 4.79
160 161 9.758651 ACTAAAATGGTTTATTTGACTTTGACC 57.241 29.630 0.00 0.00 38.93 4.02
169 170 9.869757 CCTCCCTAAACTAAAATGGTTTATTTG 57.130 33.333 0.48 0.00 38.93 2.32
170 171 9.042450 CCCTCCCTAAACTAAAATGGTTTATTT 57.958 33.333 0.48 0.00 40.67 1.40
171 172 7.622081 CCCCTCCCTAAACTAAAATGGTTTATT 59.378 37.037 0.48 0.00 38.12 1.40
172 173 7.130099 CCCCTCCCTAAACTAAAATGGTTTAT 58.870 38.462 0.48 0.00 38.12 1.40
173 174 6.495847 CCCCTCCCTAAACTAAAATGGTTTA 58.504 40.000 0.00 0.00 37.88 2.01
174 175 5.338632 CCCCTCCCTAAACTAAAATGGTTT 58.661 41.667 0.00 0.00 39.70 3.27
175 176 4.816614 GCCCCTCCCTAAACTAAAATGGTT 60.817 45.833 0.00 0.00 0.00 3.67
176 177 3.309629 GCCCCTCCCTAAACTAAAATGGT 60.310 47.826 0.00 0.00 0.00 3.55
177 178 3.296854 GCCCCTCCCTAAACTAAAATGG 58.703 50.000 0.00 0.00 0.00 3.16
178 179 3.296854 GGCCCCTCCCTAAACTAAAATG 58.703 50.000 0.00 0.00 0.00 2.32
179 180 2.930405 TGGCCCCTCCCTAAACTAAAAT 59.070 45.455 0.00 0.00 0.00 1.82
180 181 2.360230 TGGCCCCTCCCTAAACTAAAA 58.640 47.619 0.00 0.00 0.00 1.52
181 182 2.062773 TGGCCCCTCCCTAAACTAAA 57.937 50.000 0.00 0.00 0.00 1.85
182 183 2.042026 GTTTGGCCCCTCCCTAAACTAA 59.958 50.000 0.00 0.00 0.00 2.24
183 184 1.637035 GTTTGGCCCCTCCCTAAACTA 59.363 52.381 0.00 0.00 0.00 2.24
184 185 0.408309 GTTTGGCCCCTCCCTAAACT 59.592 55.000 0.00 0.00 0.00 2.66
185 186 0.408309 AGTTTGGCCCCTCCCTAAAC 59.592 55.000 0.00 1.95 0.00 2.01
186 187 1.163408 AAGTTTGGCCCCTCCCTAAA 58.837 50.000 0.00 0.00 0.00 1.85
187 188 0.407918 CAAGTTTGGCCCCTCCCTAA 59.592 55.000 0.00 0.00 0.00 2.69
188 189 0.774491 ACAAGTTTGGCCCCTCCCTA 60.774 55.000 0.00 0.00 0.00 3.53
189 190 2.081585 GACAAGTTTGGCCCCTCCCT 62.082 60.000 0.00 0.00 0.00 4.20
190 191 1.606601 GACAAGTTTGGCCCCTCCC 60.607 63.158 0.00 0.00 0.00 4.30
191 192 0.178961 AAGACAAGTTTGGCCCCTCC 60.179 55.000 0.00 0.00 36.67 4.30
192 193 1.704641 AAAGACAAGTTTGGCCCCTC 58.295 50.000 0.00 0.00 36.67 4.30
193 194 2.174685 AAAAGACAAGTTTGGCCCCT 57.825 45.000 0.00 0.00 36.67 4.79
219 220 4.272991 TCGTTAAGCTAGCCGTTTCAAAAA 59.727 37.500 12.13 0.00 0.00 1.94
220 221 3.808726 TCGTTAAGCTAGCCGTTTCAAAA 59.191 39.130 12.13 0.00 0.00 2.44
221 222 3.391965 TCGTTAAGCTAGCCGTTTCAAA 58.608 40.909 12.13 0.00 0.00 2.69
222 223 2.991190 CTCGTTAAGCTAGCCGTTTCAA 59.009 45.455 12.13 0.00 0.00 2.69
223 224 2.029649 ACTCGTTAAGCTAGCCGTTTCA 60.030 45.455 12.13 0.00 0.00 2.69
224 225 2.603953 ACTCGTTAAGCTAGCCGTTTC 58.396 47.619 12.13 0.00 0.00 2.78
225 226 2.738013 ACTCGTTAAGCTAGCCGTTT 57.262 45.000 12.13 1.56 0.00 3.60
226 227 2.738013 AACTCGTTAAGCTAGCCGTT 57.262 45.000 12.13 2.38 0.00 4.44
227 228 3.379372 TGATAACTCGTTAAGCTAGCCGT 59.621 43.478 12.13 1.91 0.00 5.68
228 229 3.961182 TGATAACTCGTTAAGCTAGCCG 58.039 45.455 12.13 8.00 0.00 5.52
229 230 4.037684 TCCTGATAACTCGTTAAGCTAGCC 59.962 45.833 12.13 0.00 0.00 3.93
230 231 5.184340 TCCTGATAACTCGTTAAGCTAGC 57.816 43.478 6.62 6.62 0.00 3.42
231 232 5.631512 GCATCCTGATAACTCGTTAAGCTAG 59.368 44.000 0.00 0.00 0.00 3.42
232 233 5.068591 TGCATCCTGATAACTCGTTAAGCTA 59.931 40.000 0.00 0.00 0.00 3.32
233 234 4.141937 TGCATCCTGATAACTCGTTAAGCT 60.142 41.667 0.00 0.00 0.00 3.74
234 235 4.119862 TGCATCCTGATAACTCGTTAAGC 58.880 43.478 0.00 0.00 0.00 3.09
235 236 5.812642 ACTTGCATCCTGATAACTCGTTAAG 59.187 40.000 0.00 0.00 0.00 1.85
236 237 5.730550 ACTTGCATCCTGATAACTCGTTAA 58.269 37.500 0.00 0.00 0.00 2.01
237 238 5.339008 ACTTGCATCCTGATAACTCGTTA 57.661 39.130 0.00 0.00 0.00 3.18
238 239 4.207891 ACTTGCATCCTGATAACTCGTT 57.792 40.909 0.00 0.00 0.00 3.85
239 240 3.895232 ACTTGCATCCTGATAACTCGT 57.105 42.857 0.00 0.00 0.00 4.18
240 241 3.935203 ACAACTTGCATCCTGATAACTCG 59.065 43.478 0.00 0.00 0.00 4.18
241 242 5.446473 CGAACAACTTGCATCCTGATAACTC 60.446 44.000 0.00 0.00 0.00 3.01
242 243 4.393062 CGAACAACTTGCATCCTGATAACT 59.607 41.667 0.00 0.00 0.00 2.24
243 244 4.391830 TCGAACAACTTGCATCCTGATAAC 59.608 41.667 0.00 0.00 0.00 1.89
244 245 4.574892 TCGAACAACTTGCATCCTGATAA 58.425 39.130 0.00 0.00 0.00 1.75
245 246 4.200838 TCGAACAACTTGCATCCTGATA 57.799 40.909 0.00 0.00 0.00 2.15
246 247 3.057969 TCGAACAACTTGCATCCTGAT 57.942 42.857 0.00 0.00 0.00 2.90
247 248 2.542020 TCGAACAACTTGCATCCTGA 57.458 45.000 0.00 0.00 0.00 3.86
248 249 3.837213 AATCGAACAACTTGCATCCTG 57.163 42.857 0.00 0.00 0.00 3.86
249 250 4.853924 AAAATCGAACAACTTGCATCCT 57.146 36.364 0.00 0.00 0.00 3.24
250 251 6.640907 ACTTTAAAATCGAACAACTTGCATCC 59.359 34.615 0.00 0.00 0.00 3.51
251 252 7.623268 ACTTTAAAATCGAACAACTTGCATC 57.377 32.000 0.00 0.00 0.00 3.91
252 253 8.419076 AAACTTTAAAATCGAACAACTTGCAT 57.581 26.923 0.00 0.00 0.00 3.96
253 254 7.820044 AAACTTTAAAATCGAACAACTTGCA 57.180 28.000 0.00 0.00 0.00 4.08
254 255 9.777843 CATAAACTTTAAAATCGAACAACTTGC 57.222 29.630 0.00 0.00 0.00 4.01
255 256 9.777843 GCATAAACTTTAAAATCGAACAACTTG 57.222 29.630 0.00 0.00 0.00 3.16
256 257 9.522804 TGCATAAACTTTAAAATCGAACAACTT 57.477 25.926 0.00 0.00 0.00 2.66
257 258 9.691362 ATGCATAAACTTTAAAATCGAACAACT 57.309 25.926 0.00 0.00 0.00 3.16
258 259 9.726034 CATGCATAAACTTTAAAATCGAACAAC 57.274 29.630 0.00 0.00 0.00 3.32
259 260 9.684448 TCATGCATAAACTTTAAAATCGAACAA 57.316 25.926 0.00 0.00 0.00 2.83
260 261 9.684448 TTCATGCATAAACTTTAAAATCGAACA 57.316 25.926 0.00 0.00 0.00 3.18
267 268 9.770097 TGTGGAATTCATGCATAAACTTTAAAA 57.230 25.926 7.93 0.00 0.00 1.52
268 269 9.202273 GTGTGGAATTCATGCATAAACTTTAAA 57.798 29.630 7.93 0.00 0.00 1.52
269 270 8.584157 AGTGTGGAATTCATGCATAAACTTTAA 58.416 29.630 7.93 0.00 0.00 1.52
270 271 8.121305 AGTGTGGAATTCATGCATAAACTTTA 57.879 30.769 7.93 0.00 0.00 1.85
271 272 6.996509 AGTGTGGAATTCATGCATAAACTTT 58.003 32.000 7.93 0.00 0.00 2.66
272 273 6.594788 AGTGTGGAATTCATGCATAAACTT 57.405 33.333 7.93 0.00 0.00 2.66
273 274 6.594788 AAGTGTGGAATTCATGCATAAACT 57.405 33.333 7.93 0.00 0.00 2.66
274 275 5.512788 CGAAGTGTGGAATTCATGCATAAAC 59.487 40.000 7.93 0.00 0.00 2.01
275 276 5.182950 ACGAAGTGTGGAATTCATGCATAAA 59.817 36.000 7.93 0.00 42.51 1.40
276 277 4.699735 ACGAAGTGTGGAATTCATGCATAA 59.300 37.500 7.93 0.00 42.51 1.90
277 278 4.260985 ACGAAGTGTGGAATTCATGCATA 58.739 39.130 7.93 0.00 42.51 3.14
278 279 3.084039 ACGAAGTGTGGAATTCATGCAT 58.916 40.909 7.93 0.00 42.51 3.96
279 280 2.503331 ACGAAGTGTGGAATTCATGCA 58.497 42.857 7.93 0.00 42.51 3.96
318 319 3.053544 TCACCAAGTGTACCCCTCAAAAA 60.054 43.478 0.00 0.00 34.79 1.94
319 320 2.510382 TCACCAAGTGTACCCCTCAAAA 59.490 45.455 0.00 0.00 34.79 2.44
320 321 2.128535 TCACCAAGTGTACCCCTCAAA 58.871 47.619 0.00 0.00 34.79 2.69
321 322 1.809133 TCACCAAGTGTACCCCTCAA 58.191 50.000 0.00 0.00 34.79 3.02
322 323 2.038863 ATCACCAAGTGTACCCCTCA 57.961 50.000 0.00 0.00 34.79 3.86
323 324 3.518303 ACTAATCACCAAGTGTACCCCTC 59.482 47.826 0.00 0.00 34.79 4.30
324 325 3.527937 ACTAATCACCAAGTGTACCCCT 58.472 45.455 0.00 0.00 34.79 4.79
325 326 3.994931 ACTAATCACCAAGTGTACCCC 57.005 47.619 0.00 0.00 34.79 4.95
326 327 4.901868 TCAACTAATCACCAAGTGTACCC 58.098 43.478 0.00 0.00 34.79 3.69
327 328 5.790593 TCTCAACTAATCACCAAGTGTACC 58.209 41.667 0.00 0.00 34.79 3.34
328 329 6.586844 GTCTCTCAACTAATCACCAAGTGTAC 59.413 42.308 0.00 0.00 34.79 2.90
329 330 6.266786 TGTCTCTCAACTAATCACCAAGTGTA 59.733 38.462 0.00 0.00 34.79 2.90
330 331 5.070446 TGTCTCTCAACTAATCACCAAGTGT 59.930 40.000 0.00 0.00 34.79 3.55
331 332 5.541845 TGTCTCTCAACTAATCACCAAGTG 58.458 41.667 0.00 0.00 34.45 3.16
332 333 5.808366 TGTCTCTCAACTAATCACCAAGT 57.192 39.130 0.00 0.00 0.00 3.16
333 334 7.496529 TTTTGTCTCTCAACTAATCACCAAG 57.503 36.000 0.00 0.00 35.61 3.61
334 335 7.873719 TTTTTGTCTCTCAACTAATCACCAA 57.126 32.000 0.00 0.00 35.61 3.67
335 336 9.219603 CTATTTTTGTCTCTCAACTAATCACCA 57.780 33.333 0.00 0.00 35.61 4.17
336 337 9.436957 TCTATTTTTGTCTCTCAACTAATCACC 57.563 33.333 0.00 0.00 35.61 4.02
434 2021 1.921230 GACGAAAATGGAGTCTCTCGC 59.079 52.381 8.02 0.00 32.58 5.03
475 2062 6.715264 ACCTCCAGTTTAATGTTTTGTCCTAG 59.285 38.462 0.00 0.00 0.00 3.02
518 2115 4.803426 AGCTGTAGCCGCTGTCGC 62.803 66.667 2.16 2.36 43.38 5.19
519 2116 2.125912 AAGCTGTAGCCGCTGTCG 60.126 61.111 2.16 0.00 43.38 4.35
667 2265 6.365247 TCGAGTTGCTTAGTGAGTAAACAATC 59.635 38.462 0.00 0.00 31.08 2.67
668 2266 6.220930 TCGAGTTGCTTAGTGAGTAAACAAT 58.779 36.000 0.00 0.00 31.08 2.71
680 2278 8.538856 CATTTCTCTAATCTTCGAGTTGCTTAG 58.461 37.037 0.00 0.00 0.00 2.18
732 2333 1.513622 GAAGCAGGGGAGTCGTCTC 59.486 63.158 0.60 0.60 39.76 3.36
733 2334 1.985116 GGAAGCAGGGGAGTCGTCT 60.985 63.158 0.00 0.00 0.00 4.18
941 2604 2.050350 CGCGTCTTCCCCTGTCCTA 61.050 63.158 0.00 0.00 0.00 2.94
1044 2723 2.421739 GGCACCGCGTCCATCTAT 59.578 61.111 4.92 0.00 0.00 1.98
1116 2795 2.743928 CTGAGCGTCTTGGCCACC 60.744 66.667 3.88 0.00 0.00 4.61
1257 2936 1.811266 CGATTCCTGCACGGTGAGG 60.811 63.158 13.29 15.00 0.00 3.86
1266 2945 0.744771 GAAGACCCACCGATTCCTGC 60.745 60.000 0.00 0.00 0.00 4.85
1341 3026 4.029809 GGGTCAGACGGTTGGGGG 62.030 72.222 0.00 0.00 0.00 5.40
1618 3303 1.006805 GGTCGATCCTGGCGATGAG 60.007 63.158 0.00 0.00 40.19 2.90
1794 3479 1.362406 GCAGTAAGCCTGAAGACGGC 61.362 60.000 0.00 0.00 44.49 5.68
1795 3480 2.755929 GCAGTAAGCCTGAAGACGG 58.244 57.895 0.00 0.00 44.49 4.79
1805 3490 0.105778 CCTGGGAGCTAGCAGTAAGC 59.894 60.000 18.83 0.00 46.19 3.09
1806 3491 1.686052 CTCCTGGGAGCTAGCAGTAAG 59.314 57.143 18.83 8.87 35.31 2.34
1807 3492 1.007238 ACTCCTGGGAGCTAGCAGTAA 59.993 52.381 18.83 0.00 45.54 2.24
1809 3494 0.686112 GACTCCTGGGAGCTAGCAGT 60.686 60.000 18.83 9.50 45.54 4.40
1827 3512 1.067846 CACTCAACAATCCGTCGGAGA 60.068 52.381 20.50 9.88 34.05 3.71
1832 3517 1.455786 CGACACACTCAACAATCCGTC 59.544 52.381 0.00 0.00 0.00 4.79
1834 3519 1.778334 TCGACACACTCAACAATCCG 58.222 50.000 0.00 0.00 0.00 4.18
1838 3523 1.866601 CAGCATCGACACACTCAACAA 59.133 47.619 0.00 0.00 0.00 2.83
1841 3526 1.202521 ACACAGCATCGACACACTCAA 60.203 47.619 0.00 0.00 0.00 3.02
1844 3529 1.067565 CCTACACAGCATCGACACACT 60.068 52.381 0.00 0.00 0.00 3.55
1847 3532 0.460284 CCCCTACACAGCATCGACAC 60.460 60.000 0.00 0.00 0.00 3.67
1852 3537 2.486191 CCTGATTCCCCTACACAGCATC 60.486 54.545 0.00 0.00 0.00 3.91
1884 3571 6.348458 CCGACACATGTATCAACTCAACAAAT 60.348 38.462 4.77 0.00 0.00 2.32
1889 3576 3.000041 GCCGACACATGTATCAACTCAA 59.000 45.455 4.77 0.00 0.00 3.02
1890 3577 2.616960 GCCGACACATGTATCAACTCA 58.383 47.619 4.77 0.00 0.00 3.41
1891 3578 1.933853 GGCCGACACATGTATCAACTC 59.066 52.381 4.77 0.00 0.00 3.01
1914 3601 3.379240 CTCAACGTCATATCAGGCTCTG 58.621 50.000 0.00 0.00 0.00 3.35
1938 3625 1.571919 ACTCTGTTTCACAGCGTCAC 58.428 50.000 0.00 0.00 39.73 3.67
1981 3668 1.079543 CTCAACCGAGTGCCCTCTG 60.080 63.158 0.00 0.00 35.43 3.35
1999 3686 1.632589 ATTGGACCAAGGAAAGGTGC 58.367 50.000 13.43 0.00 46.44 5.01
2001 3688 3.117131 ACTGAATTGGACCAAGGAAAGGT 60.117 43.478 13.43 4.13 43.46 3.50
2039 3728 1.595093 GGTTCAAGGGTCCGCATTGG 61.595 60.000 0.00 0.00 40.09 3.16
2043 3732 1.228124 CAAGGTTCAAGGGTCCGCA 60.228 57.895 0.00 0.00 0.00 5.69
2046 3735 2.626780 GCGCAAGGTTCAAGGGTCC 61.627 63.158 0.30 0.00 38.28 4.46
2047 3736 1.244019 ATGCGCAAGGTTCAAGGGTC 61.244 55.000 17.11 0.00 38.28 4.46
2054 3743 1.266718 TCAGACAAATGCGCAAGGTTC 59.733 47.619 17.11 9.36 38.28 3.62
2059 3748 1.028130 TGGTTCAGACAAATGCGCAA 58.972 45.000 17.11 0.00 0.00 4.85
2080 3769 1.292223 CAGAACACGTCGGGACCAT 59.708 57.895 0.00 0.00 0.00 3.55
2085 3774 2.047274 ATGGCAGAACACGTCGGG 60.047 61.111 0.00 0.00 0.00 5.14
2087 3776 0.948623 TTGGATGGCAGAACACGTCG 60.949 55.000 0.00 0.00 0.00 5.12
2088 3777 0.798776 CTTGGATGGCAGAACACGTC 59.201 55.000 0.00 0.00 0.00 4.34
2098 3787 2.890371 CAAGCCTGCTTGGATGGC 59.110 61.111 21.33 0.00 46.88 4.40
2112 3801 2.445316 CGCTCGACAGACTGATACAAG 58.555 52.381 10.08 0.61 0.00 3.16
2115 3804 0.733729 ACCGCTCGACAGACTGATAC 59.266 55.000 10.08 0.00 0.00 2.24
2116 3805 1.015109 GACCGCTCGACAGACTGATA 58.985 55.000 10.08 0.00 0.00 2.15
2117 3806 1.658686 GGACCGCTCGACAGACTGAT 61.659 60.000 10.08 0.00 0.00 2.90
2118 3807 2.333417 GGACCGCTCGACAGACTGA 61.333 63.158 10.08 0.00 0.00 3.41
2119 3808 2.179517 GGACCGCTCGACAGACTG 59.820 66.667 0.00 0.00 0.00 3.51
2120 3809 3.432588 CGGACCGCTCGACAGACT 61.433 66.667 0.00 0.00 0.00 3.24
2121 3810 2.267681 ATTCGGACCGCTCGACAGAC 62.268 60.000 9.66 0.00 36.30 3.51
2122 3811 2.044555 ATTCGGACCGCTCGACAGA 61.045 57.895 9.66 0.00 36.30 3.41
2123 3812 1.874019 CATTCGGACCGCTCGACAG 60.874 63.158 9.66 0.00 36.30 3.51
2124 3813 2.180769 CATTCGGACCGCTCGACA 59.819 61.111 9.66 0.00 36.30 4.35
2125 3814 2.158959 CACATTCGGACCGCTCGAC 61.159 63.158 9.66 0.00 36.30 4.20
2126 3815 2.149803 AACACATTCGGACCGCTCGA 62.150 55.000 9.66 0.00 34.62 4.04
2127 3816 1.289109 AAACACATTCGGACCGCTCG 61.289 55.000 9.66 1.60 0.00 5.03
2128 3817 0.872388 AAAACACATTCGGACCGCTC 59.128 50.000 9.66 0.00 0.00 5.03
2129 3818 2.073816 CTAAAACACATTCGGACCGCT 58.926 47.619 9.66 0.00 0.00 5.52
2130 3819 1.802365 ACTAAAACACATTCGGACCGC 59.198 47.619 9.66 0.00 0.00 5.68
2131 3820 5.376537 GTTTACTAAAACACATTCGGACCG 58.623 41.667 7.84 7.84 43.73 4.79
2132 3821 5.615325 CGGTTTACTAAAACACATTCGGACC 60.615 44.000 3.66 0.00 45.68 4.46
2133 3822 5.177327 TCGGTTTACTAAAACACATTCGGAC 59.823 40.000 3.66 0.00 45.68 4.79
2134 3823 5.295950 TCGGTTTACTAAAACACATTCGGA 58.704 37.500 3.66 0.00 45.68 4.55
2135 3824 5.594724 TCGGTTTACTAAAACACATTCGG 57.405 39.130 3.66 0.00 45.68 4.30
2136 3825 6.788930 GTCTTCGGTTTACTAAAACACATTCG 59.211 38.462 3.66 0.00 45.68 3.34
2137 3826 7.632721 TGTCTTCGGTTTACTAAAACACATTC 58.367 34.615 3.66 0.00 45.68 2.67
2138 3827 7.496591 TCTGTCTTCGGTTTACTAAAACACATT 59.503 33.333 3.66 0.00 45.68 2.71
2139 3828 6.987992 TCTGTCTTCGGTTTACTAAAACACAT 59.012 34.615 3.66 0.00 45.68 3.21
2140 3829 6.339730 TCTGTCTTCGGTTTACTAAAACACA 58.660 36.000 3.66 0.00 45.68 3.72
2141 3830 6.833342 TCTGTCTTCGGTTTACTAAAACAC 57.167 37.500 3.66 0.00 45.68 3.32
2142 3831 6.480981 CCTTCTGTCTTCGGTTTACTAAAACA 59.519 38.462 3.66 0.00 45.68 2.83
2143 3832 6.073385 CCCTTCTGTCTTCGGTTTACTAAAAC 60.073 42.308 0.00 0.00 43.58 2.43
2144 3833 5.993441 CCCTTCTGTCTTCGGTTTACTAAAA 59.007 40.000 0.00 0.00 0.00 1.52
2145 3834 5.305128 TCCCTTCTGTCTTCGGTTTACTAAA 59.695 40.000 0.00 0.00 0.00 1.85
2146 3835 4.834496 TCCCTTCTGTCTTCGGTTTACTAA 59.166 41.667 0.00 0.00 0.00 2.24
2147 3836 4.410099 TCCCTTCTGTCTTCGGTTTACTA 58.590 43.478 0.00 0.00 0.00 1.82
2148 3837 3.236896 TCCCTTCTGTCTTCGGTTTACT 58.763 45.455 0.00 0.00 0.00 2.24
2149 3838 3.672767 TCCCTTCTGTCTTCGGTTTAC 57.327 47.619 0.00 0.00 0.00 2.01
2150 3839 3.899360 TCTTCCCTTCTGTCTTCGGTTTA 59.101 43.478 0.00 0.00 0.00 2.01
2151 3840 2.704065 TCTTCCCTTCTGTCTTCGGTTT 59.296 45.455 0.00 0.00 0.00 3.27
2152 3841 2.300437 CTCTTCCCTTCTGTCTTCGGTT 59.700 50.000 0.00 0.00 0.00 4.44
2153 3842 1.896465 CTCTTCCCTTCTGTCTTCGGT 59.104 52.381 0.00 0.00 0.00 4.69
2154 3843 1.205893 CCTCTTCCCTTCTGTCTTCGG 59.794 57.143 0.00 0.00 0.00 4.30
2155 3844 2.165437 CTCCTCTTCCCTTCTGTCTTCG 59.835 54.545 0.00 0.00 0.00 3.79
2156 3845 2.499693 CCTCCTCTTCCCTTCTGTCTTC 59.500 54.545 0.00 0.00 0.00 2.87
2157 3846 2.158081 ACCTCCTCTTCCCTTCTGTCTT 60.158 50.000 0.00 0.00 0.00 3.01
2158 3847 1.435168 ACCTCCTCTTCCCTTCTGTCT 59.565 52.381 0.00 0.00 0.00 3.41
2159 3848 1.945580 ACCTCCTCTTCCCTTCTGTC 58.054 55.000 0.00 0.00 0.00 3.51
2160 3849 1.981495 CAACCTCCTCTTCCCTTCTGT 59.019 52.381 0.00 0.00 0.00 3.41
2161 3850 1.339535 GCAACCTCCTCTTCCCTTCTG 60.340 57.143 0.00 0.00 0.00 3.02
2162 3851 0.988063 GCAACCTCCTCTTCCCTTCT 59.012 55.000 0.00 0.00 0.00 2.85
2163 3852 0.034960 GGCAACCTCCTCTTCCCTTC 60.035 60.000 0.00 0.00 0.00 3.46
2164 3853 1.842381 CGGCAACCTCCTCTTCCCTT 61.842 60.000 0.00 0.00 0.00 3.95
2165 3854 2.294078 CGGCAACCTCCTCTTCCCT 61.294 63.158 0.00 0.00 0.00 4.20
2166 3855 2.269241 CGGCAACCTCCTCTTCCC 59.731 66.667 0.00 0.00 0.00 3.97
2167 3856 2.269241 CCGGCAACCTCCTCTTCC 59.731 66.667 0.00 0.00 0.00 3.46
2168 3857 2.436824 GCCGGCAACCTCCTCTTC 60.437 66.667 24.80 0.00 0.00 2.87
2169 3858 4.394712 CGCCGGCAACCTCCTCTT 62.395 66.667 28.98 0.00 0.00 2.85
2171 3860 4.699522 AACGCCGGCAACCTCCTC 62.700 66.667 28.98 0.00 0.00 3.71
2172 3861 4.699522 GAACGCCGGCAACCTCCT 62.700 66.667 28.98 0.91 0.00 3.69
2182 3871 3.011760 GAAAGCAGTCCGAACGCCG 62.012 63.158 0.00 0.00 38.18 6.46
2183 3872 1.959226 TGAAAGCAGTCCGAACGCC 60.959 57.895 0.00 0.00 0.00 5.68
2184 3873 1.204312 GTGAAAGCAGTCCGAACGC 59.796 57.895 0.00 0.00 0.00 4.84
2185 3874 1.213094 ACGTGAAAGCAGTCCGAACG 61.213 55.000 0.00 0.00 35.78 3.95
2186 3875 0.507358 GACGTGAAAGCAGTCCGAAC 59.493 55.000 0.00 0.00 0.00 3.95
2187 3876 0.387929 AGACGTGAAAGCAGTCCGAA 59.612 50.000 0.00 0.00 35.65 4.30
2188 3877 0.318699 CAGACGTGAAAGCAGTCCGA 60.319 55.000 0.00 0.00 35.65 4.55
2189 3878 1.284982 CCAGACGTGAAAGCAGTCCG 61.285 60.000 0.00 0.00 35.65 4.79
2190 3879 1.569479 GCCAGACGTGAAAGCAGTCC 61.569 60.000 0.00 0.00 35.65 3.85
2191 3880 0.880278 TGCCAGACGTGAAAGCAGTC 60.880 55.000 0.00 0.00 35.30 3.51
2192 3881 0.463654 TTGCCAGACGTGAAAGCAGT 60.464 50.000 0.00 0.00 34.45 4.40
2193 3882 0.877071 ATTGCCAGACGTGAAAGCAG 59.123 50.000 0.00 0.00 34.45 4.24
2194 3883 0.874390 GATTGCCAGACGTGAAAGCA 59.126 50.000 0.00 0.00 0.00 3.91
2195 3884 0.169009 GGATTGCCAGACGTGAAAGC 59.831 55.000 0.00 0.00 0.00 3.51
2196 3885 1.466167 CAGGATTGCCAGACGTGAAAG 59.534 52.381 0.00 0.00 36.29 2.62
2197 3886 1.522668 CAGGATTGCCAGACGTGAAA 58.477 50.000 0.00 0.00 36.29 2.69
2198 3887 0.955428 GCAGGATTGCCAGACGTGAA 60.955 55.000 0.00 0.00 44.74 3.18
2199 3888 1.375908 GCAGGATTGCCAGACGTGA 60.376 57.895 0.00 0.00 44.74 4.35
2200 3889 3.181367 GCAGGATTGCCAGACGTG 58.819 61.111 0.00 0.00 44.74 4.49
2212 3901 2.200092 GTTTTGGGTGGGGCAGGA 59.800 61.111 0.00 0.00 0.00 3.86
2213 3902 2.922503 GGTTTTGGGTGGGGCAGG 60.923 66.667 0.00 0.00 0.00 4.85
2214 3903 1.536174 ATGGTTTTGGGTGGGGCAG 60.536 57.895 0.00 0.00 0.00 4.85
2217 3906 1.612146 GGGATGGTTTTGGGTGGGG 60.612 63.158 0.00 0.00 0.00 4.96
2241 3930 1.598130 GGCGAGAAAGCACACAGGT 60.598 57.895 0.00 0.00 39.27 4.00
2244 3933 2.664851 CGGGCGAGAAAGCACACA 60.665 61.111 0.00 0.00 41.46 3.72
2246 3935 2.357034 GTCGGGCGAGAAAGCACA 60.357 61.111 0.00 0.00 41.46 4.57
2265 3954 1.543208 GGTGTCAATGTGAGCACCTGA 60.543 52.381 16.28 0.00 41.27 3.86
2269 3958 0.884704 ACCGGTGTCAATGTGAGCAC 60.885 55.000 6.12 0.00 31.95 4.40
2275 3964 2.231478 CACTCTAGACCGGTGTCAATGT 59.769 50.000 14.63 2.48 44.33 2.71
2283 3972 2.045131 GCGTCCACTCTAGACCGGT 61.045 63.158 6.92 6.92 0.00 5.28
2295 3984 3.936203 AGTGAAAGGCCGCGTCCA 61.936 61.111 9.68 0.00 0.00 4.02
2467 4157 2.813226 ATACCCGCTGGCTCGCAAAA 62.813 55.000 0.00 0.00 33.59 2.44
2470 4160 1.962321 TTAATACCCGCTGGCTCGCA 61.962 55.000 0.00 0.00 33.59 5.10
2500 4190 1.616456 GGTAGACGGGAGGAGTCAACT 60.616 57.143 0.00 0.00 40.84 3.16
2517 4207 3.046968 TGCATCGTTTAACAGCAGGTA 57.953 42.857 3.39 0.00 0.00 3.08
2537 4228 1.600916 GGTTCTTGCCTGGCGTCTT 60.601 57.895 14.98 0.00 0.00 3.01
2567 4259 1.694150 CAAGGAATAGATGGGGAGCGA 59.306 52.381 0.00 0.00 0.00 4.93
2580 4272 4.210331 GTGGAGAATATGGTGCAAGGAAT 58.790 43.478 0.00 0.00 0.00 3.01
2581 4273 3.010027 TGTGGAGAATATGGTGCAAGGAA 59.990 43.478 0.00 0.00 0.00 3.36
2608 4300 1.405933 CCTGCTCGTTGGATGTCATGA 60.406 52.381 0.00 0.00 0.00 3.07
2613 4305 0.976641 TCTTCCTGCTCGTTGGATGT 59.023 50.000 0.00 0.00 31.76 3.06
2619 4311 2.630580 AGAACTTCTCTTCCTGCTCGTT 59.369 45.455 0.00 0.00 0.00 3.85
2634 4326 2.092323 GGCTTTTATGCCGGAGAACTT 58.908 47.619 5.05 0.00 43.74 2.66
2676 4368 2.844362 CCTGGCTCCTATCCGGCA 60.844 66.667 0.00 0.00 0.00 5.69
2707 4399 1.218196 CCTAGAGCAAGGAGGGAGGTA 59.782 57.143 0.00 0.00 39.15 3.08
2717 4409 1.381928 TACGGACGGCCTAGAGCAAG 61.382 60.000 5.33 0.00 46.50 4.01
2718 4410 1.378911 TACGGACGGCCTAGAGCAA 60.379 57.895 5.33 0.00 46.50 3.91
2733 4425 2.768344 AGCCTCCCCCATGGTACG 60.768 66.667 11.73 0.00 34.77 3.67
2744 4445 3.036429 ATGCCGACTTGGAGCCTCC 62.036 63.158 2.98 2.98 42.00 4.30
2798 4499 0.173708 CAGTAACTCGCCACTCCTCC 59.826 60.000 0.00 0.00 0.00 4.30
2817 4518 1.227853 CCCCTGCGTATTGGCCTAC 60.228 63.158 3.32 0.00 0.00 3.18
2818 4519 1.383386 TCCCCTGCGTATTGGCCTA 60.383 57.895 3.32 0.00 0.00 3.93
2824 4525 2.186903 CGTGCTCCCCTGCGTATT 59.813 61.111 0.00 0.00 35.36 1.89
2825 4526 3.849951 CCGTGCTCCCCTGCGTAT 61.850 66.667 0.00 0.00 35.36 3.06
2846 4547 2.520500 ACAACCACATTGCCCGCA 60.521 55.556 0.00 0.00 42.62 5.69
2847 4548 1.876497 ATGACAACCACATTGCCCGC 61.876 55.000 0.00 0.00 42.62 6.13
2854 4555 1.522668 CACGTCCATGACAACCACAT 58.477 50.000 0.00 0.00 32.09 3.21
2855 4556 0.533978 CCACGTCCATGACAACCACA 60.534 55.000 0.00 0.00 32.09 4.17
2872 4573 3.277211 GAGCTGTACGACACGCCCA 62.277 63.158 0.00 0.00 0.00 5.36
2875 4576 1.514443 GAGGAGCTGTACGACACGC 60.514 63.158 0.00 0.00 0.00 5.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.