Multiple sequence alignment - TraesCS5D01G483700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G483700 chr5D 100.000 2252 0 0 1 2252 520284815 520282564 0.000000e+00 4159.0
1 TraesCS5D01G483700 chr5D 100.000 214 0 0 2501 2714 520282315 520282102 1.960000e-106 396.0
2 TraesCS5D01G483700 chrUn 92.822 1616 57 21 662 2252 311502882 311504463 0.000000e+00 2287.0
3 TraesCS5D01G483700 chrUn 87.179 429 43 7 1 425 67237325 67237745 6.800000e-131 477.0
4 TraesCS5D01G483700 chrUn 92.593 189 12 1 2526 2714 311504709 311504895 1.240000e-68 270.0
5 TraesCS5D01G483700 chr5A 92.253 1407 64 22 752 2140 647808901 647807522 0.000000e+00 1953.0
6 TraesCS5D01G483700 chr5A 89.405 538 33 12 1731 2252 647590026 647589497 0.000000e+00 656.0
7 TraesCS5D01G483700 chr5A 86.775 431 27 11 1078 1481 647607175 647606748 1.150000e-123 453.0
8 TraesCS5D01G483700 chr5A 84.984 313 27 12 720 1021 647607478 647607175 1.580000e-77 300.0
9 TraesCS5D01G483700 chr5A 90.094 212 21 0 2501 2712 647589423 647589212 2.660000e-70 276.0
10 TraesCS5D01G483700 chr5A 89.671 213 17 3 1421 1632 647606730 647606522 1.600000e-67 267.0
11 TraesCS5D01G483700 chr5A 83.173 208 17 6 2525 2714 647807137 647806930 9.990000e-40 174.0
12 TraesCS5D01G483700 chr5A 81.513 119 19 2 2505 2620 304003238 304003356 8.000000e-16 95.3
13 TraesCS5D01G483700 chr5B 79.545 220 39 5 157 374 617053430 617053645 4.680000e-33 152.0
14 TraesCS5D01G483700 chr5B 82.911 158 12 7 1305 1460 655288593 655288737 7.890000e-26 128.0
15 TraesCS5D01G483700 chr5B 81.513 119 19 2 2505 2620 616440324 616440442 8.000000e-16 95.3
16 TraesCS5D01G483700 chr5B 100.000 28 0 0 347 374 546908757 546908730 5.000000e-03 52.8
17 TraesCS5D01G483700 chr3A 76.596 282 53 11 99 374 212302295 212302569 2.820000e-30 143.0
18 TraesCS5D01G483700 chr3A 75.789 285 57 7 99 374 67347154 67347435 1.700000e-27 134.0
19 TraesCS5D01G483700 chr3A 78.534 191 35 5 185 374 744788256 744788441 1.320000e-23 121.0
20 TraesCS5D01G483700 chr3D 77.731 238 46 6 141 374 85839274 85839508 3.640000e-29 139.0
21 TraesCS5D01G483700 chr7B 76.753 271 47 11 120 378 125377885 125378151 1.310000e-28 137.0
22 TraesCS5D01G483700 chr2B 83.898 118 14 5 258 374 627059212 627059325 1.030000e-19 108.0
23 TraesCS5D01G483700 chr7A 83.193 119 17 2 2505 2620 41866789 41866671 3.700000e-19 106.0
24 TraesCS5D01G483700 chr7A 82.301 113 16 2 2510 2620 634398959 634399069 8.000000e-16 95.3
25 TraesCS5D01G483700 chr6A 81.513 119 19 2 2505 2620 121662574 121662692 8.000000e-16 95.3
26 TraesCS5D01G483700 chr2A 81.034 116 20 1 2502 2615 774633660 774633775 1.030000e-14 91.6
27 TraesCS5D01G483700 chr6D 80.672 119 20 2 2505 2620 226003072 226003190 3.720000e-14 89.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G483700 chr5D 520282102 520284815 2713 True 2277.5 4159 100.000000 1 2714 2 chr5D.!!$R1 2713
1 TraesCS5D01G483700 chrUn 311502882 311504895 2013 False 1278.5 2287 92.707500 662 2714 2 chrUn.!!$F2 2052
2 TraesCS5D01G483700 chr5A 647806930 647808901 1971 True 1063.5 1953 87.713000 752 2714 2 chr5A.!!$R3 1962
3 TraesCS5D01G483700 chr5A 647589212 647590026 814 True 466.0 656 89.749500 1731 2712 2 chr5A.!!$R1 981
4 TraesCS5D01G483700 chr5A 647606522 647607478 956 True 340.0 453 87.143333 720 1632 3 chr5A.!!$R2 912

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
494 495 0.031043 TGGGTCGAGTACGTGTTGTG 59.969 55.0 0.0 0.0 40.69 3.33 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2087 2240 0.89972 CAAAAGGGGACAGCATGCAT 59.1 50.0 21.98 7.42 42.53 3.96 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 8.190326 GCCATATAAGGGCCTAAATTTTAAGT 57.810 34.615 6.41 0.00 45.87 2.24
34 35 8.088365 GCCATATAAGGGCCTAAATTTTAAGTG 58.912 37.037 6.41 0.00 45.87 3.16
35 36 9.362151 CCATATAAGGGCCTAAATTTTAAGTGA 57.638 33.333 6.41 0.00 0.00 3.41
38 39 6.451064 AAGGGCCTAAATTTTAAGTGATCG 57.549 37.500 6.41 0.00 0.00 3.69
39 40 4.887655 AGGGCCTAAATTTTAAGTGATCGG 59.112 41.667 2.82 0.00 0.00 4.18
40 41 4.643334 GGGCCTAAATTTTAAGTGATCGGT 59.357 41.667 0.84 0.00 0.00 4.69
41 42 5.126545 GGGCCTAAATTTTAAGTGATCGGTT 59.873 40.000 0.84 0.00 0.00 4.44
42 43 6.319405 GGGCCTAAATTTTAAGTGATCGGTTA 59.681 38.462 0.84 0.00 0.00 2.85
43 44 7.415229 GGCCTAAATTTTAAGTGATCGGTTAG 58.585 38.462 0.00 0.00 0.00 2.34
44 45 7.281549 GGCCTAAATTTTAAGTGATCGGTTAGA 59.718 37.037 0.00 0.00 0.00 2.10
45 46 8.336080 GCCTAAATTTTAAGTGATCGGTTAGAG 58.664 37.037 0.00 0.00 0.00 2.43
46 47 9.595823 CCTAAATTTTAAGTGATCGGTTAGAGA 57.404 33.333 0.00 0.00 0.00 3.10
49 50 6.903883 TTTTAAGTGATCGGTTAGAGATGC 57.096 37.500 0.00 0.00 0.00 3.91
50 51 5.854010 TTAAGTGATCGGTTAGAGATGCT 57.146 39.130 0.00 0.00 0.00 3.79
51 52 4.314740 AAGTGATCGGTTAGAGATGCTC 57.685 45.455 0.00 0.00 0.00 4.26
52 53 3.561143 AGTGATCGGTTAGAGATGCTCT 58.439 45.455 2.22 2.22 43.83 4.09
53 54 3.957497 AGTGATCGGTTAGAGATGCTCTT 59.043 43.478 1.88 0.00 41.50 2.85
54 55 4.404073 AGTGATCGGTTAGAGATGCTCTTT 59.596 41.667 1.88 0.00 41.50 2.52
55 56 4.505922 GTGATCGGTTAGAGATGCTCTTTG 59.494 45.833 1.88 0.00 41.50 2.77
56 57 4.402474 TGATCGGTTAGAGATGCTCTTTGA 59.598 41.667 1.88 0.00 41.50 2.69
57 58 4.801330 TCGGTTAGAGATGCTCTTTGAA 57.199 40.909 1.88 0.00 41.50 2.69
58 59 5.147330 TCGGTTAGAGATGCTCTTTGAAA 57.853 39.130 1.88 0.00 41.50 2.69
59 60 4.929808 TCGGTTAGAGATGCTCTTTGAAAC 59.070 41.667 1.88 1.47 41.50 2.78
60 61 4.093556 CGGTTAGAGATGCTCTTTGAAACC 59.906 45.833 13.24 13.24 41.50 3.27
61 62 5.003804 GGTTAGAGATGCTCTTTGAAACCA 58.996 41.667 16.37 0.00 41.47 3.67
62 63 5.473504 GGTTAGAGATGCTCTTTGAAACCAA 59.526 40.000 16.37 0.00 41.47 3.67
63 64 6.016276 GGTTAGAGATGCTCTTTGAAACCAAA 60.016 38.462 16.37 0.00 41.47 3.28
64 65 5.444663 AGAGATGCTCTTTGAAACCAAAC 57.555 39.130 0.00 0.00 37.60 2.93
65 66 4.889409 AGAGATGCTCTTTGAAACCAAACA 59.111 37.500 0.00 0.00 37.60 2.83
66 67 5.360714 AGAGATGCTCTTTGAAACCAAACAA 59.639 36.000 0.00 0.00 37.60 2.83
67 68 5.976458 AGATGCTCTTTGAAACCAAACAAA 58.024 33.333 0.00 0.00 35.26 2.83
68 69 5.812127 AGATGCTCTTTGAAACCAAACAAAC 59.188 36.000 0.00 0.00 33.42 2.93
69 70 4.887748 TGCTCTTTGAAACCAAACAAACA 58.112 34.783 0.00 0.00 33.42 2.83
70 71 5.486526 TGCTCTTTGAAACCAAACAAACAT 58.513 33.333 0.00 0.00 33.42 2.71
71 72 5.936956 TGCTCTTTGAAACCAAACAAACATT 59.063 32.000 0.00 0.00 33.42 2.71
72 73 6.429385 TGCTCTTTGAAACCAAACAAACATTT 59.571 30.769 0.00 0.00 33.42 2.32
73 74 7.040823 TGCTCTTTGAAACCAAACAAACATTTT 60.041 29.630 0.00 0.00 33.42 1.82
74 75 7.807433 GCTCTTTGAAACCAAACAAACATTTTT 59.193 29.630 0.00 0.00 33.42 1.94
98 99 9.727859 TTTTTAAACATAGTACAGACATAGCCA 57.272 29.630 0.00 0.00 0.00 4.75
99 100 8.712285 TTTAAACATAGTACAGACATAGCCAC 57.288 34.615 0.00 0.00 0.00 5.01
100 101 5.932619 AACATAGTACAGACATAGCCACA 57.067 39.130 0.00 0.00 0.00 4.17
101 102 5.263968 ACATAGTACAGACATAGCCACAC 57.736 43.478 0.00 0.00 0.00 3.82
102 103 4.709886 ACATAGTACAGACATAGCCACACA 59.290 41.667 0.00 0.00 0.00 3.72
103 104 3.876274 AGTACAGACATAGCCACACAG 57.124 47.619 0.00 0.00 0.00 3.66
104 105 2.497675 AGTACAGACATAGCCACACAGG 59.502 50.000 0.00 0.00 41.84 4.00
118 119 5.213891 CCACACAGGCACTCATATATACA 57.786 43.478 0.00 0.00 34.60 2.29
119 120 4.991056 CCACACAGGCACTCATATATACAC 59.009 45.833 0.00 0.00 34.60 2.90
120 121 4.681483 CACACAGGCACTCATATATACACG 59.319 45.833 0.00 0.00 34.60 4.49
121 122 3.675225 CACAGGCACTCATATATACACGC 59.325 47.826 0.00 0.00 34.60 5.34
122 123 2.917343 CAGGCACTCATATATACACGCG 59.083 50.000 3.53 3.53 34.60 6.01
123 124 2.557056 AGGCACTCATATATACACGCGT 59.443 45.455 5.58 5.58 0.00 6.01
124 125 3.754850 AGGCACTCATATATACACGCGTA 59.245 43.478 13.44 0.00 0.00 4.42
125 126 4.398358 AGGCACTCATATATACACGCGTAT 59.602 41.667 13.44 1.77 41.34 3.06
126 127 5.587443 AGGCACTCATATATACACGCGTATA 59.413 40.000 13.44 5.15 43.16 1.47
127 128 5.680229 GGCACTCATATATACACGCGTATAC 59.320 44.000 13.44 0.00 42.10 1.47
128 129 6.457934 GGCACTCATATATACACGCGTATACT 60.458 42.308 13.44 0.00 42.10 2.12
129 130 6.628065 GCACTCATATATACACGCGTATACTC 59.372 42.308 13.44 0.00 42.10 2.59
130 131 7.675637 GCACTCATATATACACGCGTATACTCA 60.676 40.741 13.44 0.00 42.10 3.41
131 132 7.635202 CACTCATATATACACGCGTATACTCAC 59.365 40.741 13.44 0.00 42.10 3.51
132 133 7.008440 TCATATATACACGCGTATACTCACC 57.992 40.000 13.44 0.00 42.10 4.02
133 134 6.820152 TCATATATACACGCGTATACTCACCT 59.180 38.462 13.44 0.00 42.10 4.00
134 135 3.892918 ATACACGCGTATACTCACCTC 57.107 47.619 13.44 0.00 36.53 3.85
135 136 1.747709 ACACGCGTATACTCACCTCT 58.252 50.000 13.44 0.00 0.00 3.69
136 137 2.910199 ACACGCGTATACTCACCTCTA 58.090 47.619 13.44 0.00 0.00 2.43
137 138 3.474600 ACACGCGTATACTCACCTCTAT 58.525 45.455 13.44 0.00 0.00 1.98
138 139 3.250280 ACACGCGTATACTCACCTCTATG 59.750 47.826 13.44 0.00 0.00 2.23
139 140 3.497262 CACGCGTATACTCACCTCTATGA 59.503 47.826 13.44 0.00 0.00 2.15
140 141 4.024302 CACGCGTATACTCACCTCTATGAA 60.024 45.833 13.44 0.00 0.00 2.57
141 142 4.024218 ACGCGTATACTCACCTCTATGAAC 60.024 45.833 11.67 0.00 0.00 3.18
142 143 4.024302 CGCGTATACTCACCTCTATGAACA 60.024 45.833 0.00 0.00 0.00 3.18
143 144 5.213675 GCGTATACTCACCTCTATGAACAC 58.786 45.833 0.56 0.00 0.00 3.32
144 145 5.220989 GCGTATACTCACCTCTATGAACACA 60.221 44.000 0.56 0.00 0.00 3.72
145 146 6.200100 CGTATACTCACCTCTATGAACACAC 58.800 44.000 0.56 0.00 0.00 3.82
146 147 6.183360 CGTATACTCACCTCTATGAACACACA 60.183 42.308 0.56 0.00 0.00 3.72
147 148 6.798427 ATACTCACCTCTATGAACACACAT 57.202 37.500 0.00 0.00 0.00 3.21
148 149 5.078411 ACTCACCTCTATGAACACACATC 57.922 43.478 0.00 0.00 0.00 3.06
149 150 4.081420 ACTCACCTCTATGAACACACATCC 60.081 45.833 0.00 0.00 0.00 3.51
150 151 4.096681 TCACCTCTATGAACACACATCCT 58.903 43.478 0.00 0.00 0.00 3.24
151 152 5.269189 TCACCTCTATGAACACACATCCTA 58.731 41.667 0.00 0.00 0.00 2.94
152 153 5.127194 TCACCTCTATGAACACACATCCTAC 59.873 44.000 0.00 0.00 0.00 3.18
153 154 4.406003 ACCTCTATGAACACACATCCTACC 59.594 45.833 0.00 0.00 0.00 3.18
154 155 4.202264 CCTCTATGAACACACATCCTACCC 60.202 50.000 0.00 0.00 0.00 3.69
155 156 3.709653 TCTATGAACACACATCCTACCCC 59.290 47.826 0.00 0.00 0.00 4.95
156 157 1.735926 TGAACACACATCCTACCCCA 58.264 50.000 0.00 0.00 0.00 4.96
157 158 2.274542 TGAACACACATCCTACCCCAT 58.725 47.619 0.00 0.00 0.00 4.00
158 159 2.026356 TGAACACACATCCTACCCCATG 60.026 50.000 0.00 0.00 0.00 3.66
159 160 1.965414 ACACACATCCTACCCCATGA 58.035 50.000 0.00 0.00 0.00 3.07
160 161 1.839994 ACACACATCCTACCCCATGAG 59.160 52.381 0.00 0.00 0.00 2.90
161 162 1.141657 CACACATCCTACCCCATGAGG 59.858 57.143 0.00 0.00 0.00 3.86
162 163 1.009552 ACACATCCTACCCCATGAGGA 59.990 52.381 0.00 1.15 45.88 3.71
163 164 1.417890 CACATCCTACCCCATGAGGAC 59.582 57.143 0.00 0.00 44.64 3.85
164 165 1.059913 CATCCTACCCCATGAGGACC 58.940 60.000 0.00 0.00 44.64 4.46
165 166 0.952659 ATCCTACCCCATGAGGACCT 59.047 55.000 0.00 0.00 44.64 3.85
166 167 0.264955 TCCTACCCCATGAGGACCTC 59.735 60.000 15.13 15.13 36.92 3.85
167 168 0.266152 CCTACCCCATGAGGACCTCT 59.734 60.000 22.14 5.41 38.24 3.69
168 169 1.418334 CTACCCCATGAGGACCTCTG 58.582 60.000 22.14 16.24 38.24 3.35
169 170 1.015609 TACCCCATGAGGACCTCTGA 58.984 55.000 22.14 3.37 38.24 3.27
170 171 0.326048 ACCCCATGAGGACCTCTGAG 60.326 60.000 22.14 11.43 38.24 3.35
171 172 0.031716 CCCCATGAGGACCTCTGAGA 60.032 60.000 22.14 2.20 38.24 3.27
172 173 1.412079 CCCATGAGGACCTCTGAGAG 58.588 60.000 22.14 1.57 38.24 3.20
173 174 1.342874 CCCATGAGGACCTCTGAGAGT 60.343 57.143 22.14 2.28 38.24 3.24
174 175 2.031120 CCATGAGGACCTCTGAGAGTC 58.969 57.143 22.14 11.32 36.89 3.36
175 176 2.358090 CCATGAGGACCTCTGAGAGTCT 60.358 54.545 22.14 3.00 36.89 3.24
176 177 3.117701 CCATGAGGACCTCTGAGAGTCTA 60.118 52.174 22.14 0.00 36.89 2.59
177 178 4.531854 CATGAGGACCTCTGAGAGTCTAA 58.468 47.826 22.14 0.00 0.00 2.10
178 179 4.229304 TGAGGACCTCTGAGAGTCTAAG 57.771 50.000 22.14 0.00 0.00 2.18
179 180 2.949644 GAGGACCTCTGAGAGTCTAAGC 59.050 54.545 14.72 8.27 0.00 3.09
180 181 2.580783 AGGACCTCTGAGAGTCTAAGCT 59.419 50.000 19.01 9.77 0.00 3.74
181 182 2.687935 GGACCTCTGAGAGTCTAAGCTG 59.312 54.545 19.01 0.00 0.00 4.24
182 183 2.687935 GACCTCTGAGAGTCTAAGCTGG 59.312 54.545 8.88 12.34 0.00 4.85
183 184 2.042433 ACCTCTGAGAGTCTAAGCTGGT 59.958 50.000 8.88 13.33 0.00 4.00
184 185 3.267291 ACCTCTGAGAGTCTAAGCTGGTA 59.733 47.826 16.10 0.00 0.00 3.25
185 186 4.079443 ACCTCTGAGAGTCTAAGCTGGTAT 60.079 45.833 16.10 0.00 0.00 2.73
186 187 5.132985 ACCTCTGAGAGTCTAAGCTGGTATA 59.867 44.000 16.10 0.00 0.00 1.47
187 188 6.183361 ACCTCTGAGAGTCTAAGCTGGTATAT 60.183 42.308 16.10 0.00 0.00 0.86
188 189 6.374333 CCTCTGAGAGTCTAAGCTGGTATATC 59.626 46.154 8.88 0.00 0.00 1.63
189 190 6.842676 TCTGAGAGTCTAAGCTGGTATATCA 58.157 40.000 0.00 0.00 0.00 2.15
190 191 7.465960 TCTGAGAGTCTAAGCTGGTATATCAT 58.534 38.462 0.00 0.00 0.00 2.45
191 192 7.609918 TCTGAGAGTCTAAGCTGGTATATCATC 59.390 40.741 0.00 0.00 0.00 2.92
192 193 7.465960 TGAGAGTCTAAGCTGGTATATCATCT 58.534 38.462 0.00 0.00 0.00 2.90
193 194 7.947332 TGAGAGTCTAAGCTGGTATATCATCTT 59.053 37.037 7.24 7.24 0.00 2.40
194 195 8.121305 AGAGTCTAAGCTGGTATATCATCTTG 57.879 38.462 11.51 3.46 0.00 3.02
195 196 7.947332 AGAGTCTAAGCTGGTATATCATCTTGA 59.053 37.037 11.51 5.38 0.00 3.02
196 197 8.121305 AGTCTAAGCTGGTATATCATCTTGAG 57.879 38.462 11.51 6.19 0.00 3.02
197 198 7.947332 AGTCTAAGCTGGTATATCATCTTGAGA 59.053 37.037 11.51 7.96 0.00 3.27
198 199 8.748412 GTCTAAGCTGGTATATCATCTTGAGAT 58.252 37.037 11.51 0.00 32.49 2.75
199 200 9.319060 TCTAAGCTGGTATATCATCTTGAGATT 57.681 33.333 11.51 0.00 30.15 2.40
200 201 9.368674 CTAAGCTGGTATATCATCTTGAGATTG 57.631 37.037 11.51 0.00 30.15 2.67
201 202 7.550597 AGCTGGTATATCATCTTGAGATTGA 57.449 36.000 0.00 0.00 30.15 2.57
202 203 7.385267 AGCTGGTATATCATCTTGAGATTGAC 58.615 38.462 0.00 0.00 30.15 3.18
203 204 6.309980 GCTGGTATATCATCTTGAGATTGACG 59.690 42.308 0.00 0.00 30.15 4.35
204 205 7.524717 TGGTATATCATCTTGAGATTGACGA 57.475 36.000 0.00 0.00 30.15 4.20
205 206 7.951591 TGGTATATCATCTTGAGATTGACGAA 58.048 34.615 0.00 0.00 30.15 3.85
206 207 8.421002 TGGTATATCATCTTGAGATTGACGAAA 58.579 33.333 0.00 0.00 30.15 3.46
207 208 8.920665 GGTATATCATCTTGAGATTGACGAAAG 58.079 37.037 0.00 0.00 30.15 2.62
208 209 5.731599 ATCATCTTGAGATTGACGAAAGC 57.268 39.130 0.00 0.00 31.21 3.51
209 210 4.568956 TCATCTTGAGATTGACGAAAGCA 58.431 39.130 0.00 0.00 31.21 3.91
210 211 4.389992 TCATCTTGAGATTGACGAAAGCAC 59.610 41.667 0.00 0.00 31.21 4.40
211 212 3.067106 TCTTGAGATTGACGAAAGCACC 58.933 45.455 0.00 0.00 0.00 5.01
212 213 2.542020 TGAGATTGACGAAAGCACCA 57.458 45.000 0.00 0.00 0.00 4.17
213 214 3.057969 TGAGATTGACGAAAGCACCAT 57.942 42.857 0.00 0.00 0.00 3.55
214 215 4.200838 TGAGATTGACGAAAGCACCATA 57.799 40.909 0.00 0.00 0.00 2.74
215 216 4.183865 TGAGATTGACGAAAGCACCATAG 58.816 43.478 0.00 0.00 0.00 2.23
216 217 3.535561 AGATTGACGAAAGCACCATAGG 58.464 45.455 0.00 0.00 0.00 2.57
217 218 2.851263 TTGACGAAAGCACCATAGGT 57.149 45.000 0.00 0.00 35.62 3.08
227 228 3.609798 ACCATAGGTGCCTCGTAGT 57.390 52.632 0.00 0.00 32.98 2.73
228 229 1.400737 ACCATAGGTGCCTCGTAGTC 58.599 55.000 0.00 0.00 32.98 2.59
229 230 1.063867 ACCATAGGTGCCTCGTAGTCT 60.064 52.381 0.00 0.00 32.98 3.24
230 231 1.338337 CCATAGGTGCCTCGTAGTCTG 59.662 57.143 0.00 0.00 0.00 3.51
231 232 1.033574 ATAGGTGCCTCGTAGTCTGC 58.966 55.000 0.00 0.00 0.00 4.26
232 233 1.374343 TAGGTGCCTCGTAGTCTGCG 61.374 60.000 3.67 3.67 0.00 5.18
233 234 2.697761 GGTGCCTCGTAGTCTGCGA 61.698 63.158 12.62 12.62 36.85 5.10
240 241 2.826979 TCGTAGTCTGCGAGAATGTC 57.173 50.000 9.11 0.00 34.11 3.06
241 242 2.357075 TCGTAGTCTGCGAGAATGTCT 58.643 47.619 9.11 0.00 34.11 3.41
242 243 2.352034 TCGTAGTCTGCGAGAATGTCTC 59.648 50.000 9.11 0.00 40.06 3.36
243 244 2.539953 CGTAGTCTGCGAGAATGTCTCC 60.540 54.545 4.06 0.00 40.34 3.71
244 245 1.846007 AGTCTGCGAGAATGTCTCCT 58.154 50.000 0.00 0.00 40.34 3.69
245 246 1.748493 AGTCTGCGAGAATGTCTCCTC 59.252 52.381 0.00 0.00 40.34 3.71
246 247 1.107114 TCTGCGAGAATGTCTCCTCC 58.893 55.000 0.00 0.00 40.34 4.30
247 248 0.103937 CTGCGAGAATGTCTCCTCCC 59.896 60.000 0.00 0.00 40.34 4.30
248 249 0.614697 TGCGAGAATGTCTCCTCCCA 60.615 55.000 0.00 0.00 40.34 4.37
249 250 0.179097 GCGAGAATGTCTCCTCCCAC 60.179 60.000 0.00 0.00 40.34 4.61
250 251 1.479709 CGAGAATGTCTCCTCCCACT 58.520 55.000 0.00 0.00 40.34 4.00
251 252 1.135915 CGAGAATGTCTCCTCCCACTG 59.864 57.143 0.00 0.00 40.34 3.66
252 253 2.461695 GAGAATGTCTCCTCCCACTGA 58.538 52.381 0.00 0.00 37.55 3.41
253 254 2.834549 GAGAATGTCTCCTCCCACTGAA 59.165 50.000 0.00 0.00 37.55 3.02
254 255 3.454082 GAGAATGTCTCCTCCCACTGAAT 59.546 47.826 0.00 0.00 37.55 2.57
255 256 3.199508 AGAATGTCTCCTCCCACTGAATG 59.800 47.826 0.00 0.00 0.00 2.67
256 257 7.654770 GAGAATGTCTCCTCCCACTGAATGG 62.655 52.000 0.00 0.00 41.87 3.16
263 264 3.113745 CCACTGAATGGGCATCGC 58.886 61.111 0.00 0.00 45.95 4.58
264 265 1.452651 CCACTGAATGGGCATCGCT 60.453 57.895 0.00 0.00 45.95 4.93
265 266 1.721664 CCACTGAATGGGCATCGCTG 61.722 60.000 0.00 0.00 45.95 5.18
266 267 1.452651 ACTGAATGGGCATCGCTGG 60.453 57.895 0.00 0.00 0.00 4.85
267 268 1.153107 CTGAATGGGCATCGCTGGA 60.153 57.895 0.00 0.00 0.00 3.86
268 269 0.749091 CTGAATGGGCATCGCTGGAA 60.749 55.000 0.00 0.00 0.00 3.53
269 270 0.323269 TGAATGGGCATCGCTGGAAA 60.323 50.000 0.00 0.00 0.00 3.13
270 271 0.817013 GAATGGGCATCGCTGGAAAA 59.183 50.000 0.00 0.00 0.00 2.29
271 272 1.410153 GAATGGGCATCGCTGGAAAAT 59.590 47.619 0.00 0.00 0.00 1.82
272 273 1.035139 ATGGGCATCGCTGGAAAATC 58.965 50.000 0.00 0.00 0.00 2.17
273 274 1.356624 GGGCATCGCTGGAAAATCG 59.643 57.895 0.00 0.00 0.00 3.34
274 275 1.376609 GGGCATCGCTGGAAAATCGT 61.377 55.000 0.00 0.00 0.00 3.73
275 276 0.248215 GGCATCGCTGGAAAATCGTG 60.248 55.000 0.00 0.00 0.00 4.35
276 277 0.726827 GCATCGCTGGAAAATCGTGA 59.273 50.000 0.00 0.00 0.00 4.35
277 278 1.130373 GCATCGCTGGAAAATCGTGAA 59.870 47.619 0.00 0.00 0.00 3.18
278 279 2.414029 GCATCGCTGGAAAATCGTGAAA 60.414 45.455 0.00 0.00 0.00 2.69
279 280 3.731867 GCATCGCTGGAAAATCGTGAAAT 60.732 43.478 0.00 0.00 0.00 2.17
280 281 4.495679 GCATCGCTGGAAAATCGTGAAATA 60.496 41.667 0.00 0.00 0.00 1.40
281 282 5.751680 CATCGCTGGAAAATCGTGAAATAT 58.248 37.500 0.00 0.00 0.00 1.28
282 283 6.565811 GCATCGCTGGAAAATCGTGAAATATA 60.566 38.462 0.00 0.00 0.00 0.86
283 284 7.521529 CATCGCTGGAAAATCGTGAAATATAT 58.478 34.615 0.00 0.00 0.00 0.86
284 285 7.117241 TCGCTGGAAAATCGTGAAATATATC 57.883 36.000 0.00 0.00 0.00 1.63
285 286 6.147164 TCGCTGGAAAATCGTGAAATATATCC 59.853 38.462 0.00 0.00 0.00 2.59
286 287 6.073276 CGCTGGAAAATCGTGAAATATATCCA 60.073 38.462 0.00 0.00 33.66 3.41
288 289 7.744087 TGGAAAATCGTGAAATATATCCAGG 57.256 36.000 0.00 0.00 31.26 4.45
289 290 7.513856 TGGAAAATCGTGAAATATATCCAGGA 58.486 34.615 0.00 0.00 31.26 3.86
290 291 8.163408 TGGAAAATCGTGAAATATATCCAGGAT 58.837 33.333 7.27 7.27 37.11 3.24
291 292 9.667107 GGAAAATCGTGAAATATATCCAGGATA 57.333 33.333 11.86 11.86 35.26 2.59
295 296 8.668510 ATCGTGAAATATATCCAGGATAATGC 57.331 34.615 13.50 2.73 34.78 3.56
296 297 7.619965 TCGTGAAATATATCCAGGATAATGCA 58.380 34.615 13.50 5.23 0.00 3.96
297 298 8.100164 TCGTGAAATATATCCAGGATAATGCAA 58.900 33.333 13.50 0.00 0.00 4.08
298 299 8.393366 CGTGAAATATATCCAGGATAATGCAAG 58.607 37.037 13.50 6.54 0.00 4.01
299 300 8.186821 GTGAAATATATCCAGGATAATGCAAGC 58.813 37.037 13.50 1.59 0.00 4.01
300 301 7.889600 TGAAATATATCCAGGATAATGCAAGCA 59.110 33.333 13.50 0.00 0.00 3.91
301 302 7.636150 AATATATCCAGGATAATGCAAGCAC 57.364 36.000 13.50 0.00 0.00 4.40
302 303 2.057137 TCCAGGATAATGCAAGCACC 57.943 50.000 0.00 0.00 0.00 5.01
303 304 1.565759 TCCAGGATAATGCAAGCACCT 59.434 47.619 0.00 0.00 0.00 4.00
304 305 1.679680 CCAGGATAATGCAAGCACCTG 59.320 52.381 17.71 17.71 42.82 4.00
305 306 1.679680 CAGGATAATGCAAGCACCTGG 59.320 52.381 17.15 0.00 40.50 4.45
306 307 1.565759 AGGATAATGCAAGCACCTGGA 59.434 47.619 0.00 0.00 0.00 3.86
307 308 1.678101 GGATAATGCAAGCACCTGGAC 59.322 52.381 0.00 0.00 0.00 4.02
308 309 2.648059 GATAATGCAAGCACCTGGACT 58.352 47.619 0.00 0.00 0.00 3.85
309 310 2.584835 TAATGCAAGCACCTGGACTT 57.415 45.000 0.00 0.25 0.00 3.01
310 311 0.963962 AATGCAAGCACCTGGACTTG 59.036 50.000 21.76 21.76 44.88 3.16
311 312 0.111061 ATGCAAGCACCTGGACTTGA 59.889 50.000 26.90 16.94 44.89 3.02
312 313 0.106769 TGCAAGCACCTGGACTTGAA 60.107 50.000 26.90 19.13 44.89 2.69
313 314 0.312102 GCAAGCACCTGGACTTGAAC 59.688 55.000 26.90 13.55 44.89 3.18
314 315 0.954452 CAAGCACCTGGACTTGAACC 59.046 55.000 21.64 0.00 44.89 3.62
315 316 0.178990 AAGCACCTGGACTTGAACCC 60.179 55.000 0.00 0.00 0.00 4.11
316 317 1.062488 AGCACCTGGACTTGAACCCT 61.062 55.000 0.00 0.00 0.00 4.34
317 318 0.890996 GCACCTGGACTTGAACCCTG 60.891 60.000 0.00 0.00 0.00 4.45
318 319 0.250901 CACCTGGACTTGAACCCTGG 60.251 60.000 0.00 0.00 44.32 4.45
319 320 0.697854 ACCTGGACTTGAACCCTGGT 60.698 55.000 0.00 0.00 46.01 4.00
320 321 0.250901 CCTGGACTTGAACCCTGGTG 60.251 60.000 0.00 0.00 36.95 4.17
321 322 0.250901 CTGGACTTGAACCCTGGTGG 60.251 60.000 0.00 0.00 41.37 4.61
332 333 2.445845 CTGGTGGGGCCGAGGATA 60.446 66.667 0.00 0.00 41.21 2.59
333 334 2.766651 TGGTGGGGCCGAGGATAC 60.767 66.667 0.00 0.00 41.21 2.24
334 335 3.925090 GGTGGGGCCGAGGATACG 61.925 72.222 0.00 0.00 46.39 3.06
335 336 2.836360 GTGGGGCCGAGGATACGA 60.836 66.667 0.00 0.00 46.39 3.43
336 337 2.836360 TGGGGCCGAGGATACGAC 60.836 66.667 0.00 0.00 46.39 4.34
337 338 2.521224 GGGGCCGAGGATACGACT 60.521 66.667 0.00 0.00 46.39 4.18
338 339 2.132352 GGGGCCGAGGATACGACTT 61.132 63.158 0.00 0.00 46.39 3.01
339 340 0.825010 GGGGCCGAGGATACGACTTA 60.825 60.000 0.00 0.00 46.39 2.24
340 341 0.313357 GGGCCGAGGATACGACTTAC 59.687 60.000 0.00 0.00 46.39 2.34
341 342 0.313357 GGCCGAGGATACGACTTACC 59.687 60.000 0.00 0.00 46.39 2.85
342 343 1.316651 GCCGAGGATACGACTTACCT 58.683 55.000 0.00 0.00 46.39 3.08
343 344 1.266446 GCCGAGGATACGACTTACCTC 59.734 57.143 0.00 0.00 43.58 3.85
344 345 2.848691 CCGAGGATACGACTTACCTCT 58.151 52.381 0.00 0.00 44.47 3.69
345 346 3.805108 GCCGAGGATACGACTTACCTCTA 60.805 52.174 0.00 0.00 44.47 2.43
346 347 4.577875 CCGAGGATACGACTTACCTCTAT 58.422 47.826 0.00 0.00 44.47 1.98
347 348 5.728471 CCGAGGATACGACTTACCTCTATA 58.272 45.833 0.00 0.00 44.47 1.31
348 349 6.169094 CCGAGGATACGACTTACCTCTATAA 58.831 44.000 0.00 0.00 44.47 0.98
349 350 6.091986 CCGAGGATACGACTTACCTCTATAAC 59.908 46.154 0.00 0.00 44.47 1.89
350 351 6.091986 CGAGGATACGACTTACCTCTATAACC 59.908 46.154 0.00 0.00 44.47 2.85
351 352 6.845908 AGGATACGACTTACCTCTATAACCA 58.154 40.000 0.00 0.00 46.39 3.67
352 353 7.468496 AGGATACGACTTACCTCTATAACCAT 58.532 38.462 0.00 0.00 46.39 3.55
353 354 7.611079 AGGATACGACTTACCTCTATAACCATC 59.389 40.741 0.00 0.00 46.39 3.51
354 355 7.148103 GGATACGACTTACCTCTATAACCATCC 60.148 44.444 0.00 0.00 0.00 3.51
355 356 5.452255 ACGACTTACCTCTATAACCATCCA 58.548 41.667 0.00 0.00 0.00 3.41
356 357 5.895534 ACGACTTACCTCTATAACCATCCAA 59.104 40.000 0.00 0.00 0.00 3.53
357 358 6.553852 ACGACTTACCTCTATAACCATCCAAT 59.446 38.462 0.00 0.00 0.00 3.16
358 359 7.091443 CGACTTACCTCTATAACCATCCAATC 58.909 42.308 0.00 0.00 0.00 2.67
359 360 7.255836 CGACTTACCTCTATAACCATCCAATCA 60.256 40.741 0.00 0.00 0.00 2.57
360 361 8.511748 ACTTACCTCTATAACCATCCAATCAT 57.488 34.615 0.00 0.00 0.00 2.45
361 362 9.615660 ACTTACCTCTATAACCATCCAATCATA 57.384 33.333 0.00 0.00 0.00 2.15
363 364 7.502060 ACCTCTATAACCATCCAATCATAGG 57.498 40.000 0.00 0.00 0.00 2.57
364 365 7.025620 ACCTCTATAACCATCCAATCATAGGT 58.974 38.462 0.00 0.00 0.00 3.08
365 366 7.517604 ACCTCTATAACCATCCAATCATAGGTT 59.482 37.037 0.00 0.00 44.23 3.50
366 367 7.826252 CCTCTATAACCATCCAATCATAGGTTG 59.174 40.741 0.00 0.00 42.19 3.77
367 368 7.689299 TCTATAACCATCCAATCATAGGTTGG 58.311 38.462 2.61 2.61 46.76 3.77
371 372 3.565482 CCATCCAATCATAGGTTGGTTCG 59.435 47.826 8.75 0.00 45.05 3.95
372 373 2.639065 TCCAATCATAGGTTGGTTCGC 58.361 47.619 8.75 0.00 45.05 4.70
373 374 2.026729 TCCAATCATAGGTTGGTTCGCA 60.027 45.455 8.75 0.00 45.05 5.10
374 375 2.097466 CCAATCATAGGTTGGTTCGCAC 59.903 50.000 0.85 0.00 40.94 5.34
375 376 2.746904 CAATCATAGGTTGGTTCGCACA 59.253 45.455 0.00 0.00 0.00 4.57
376 377 2.779755 TCATAGGTTGGTTCGCACAT 57.220 45.000 0.00 0.00 0.00 3.21
377 378 3.897141 TCATAGGTTGGTTCGCACATA 57.103 42.857 0.00 0.00 0.00 2.29
378 379 3.527533 TCATAGGTTGGTTCGCACATAC 58.472 45.455 0.00 0.00 0.00 2.39
379 380 3.055747 TCATAGGTTGGTTCGCACATACA 60.056 43.478 0.00 0.00 0.00 2.29
380 381 2.489938 AGGTTGGTTCGCACATACAT 57.510 45.000 0.00 0.00 0.00 2.29
381 382 2.790433 AGGTTGGTTCGCACATACATT 58.210 42.857 0.00 0.00 0.00 2.71
382 383 3.945346 AGGTTGGTTCGCACATACATTA 58.055 40.909 0.00 0.00 0.00 1.90
383 384 4.523083 AGGTTGGTTCGCACATACATTAT 58.477 39.130 0.00 0.00 0.00 1.28
384 385 4.947388 AGGTTGGTTCGCACATACATTATT 59.053 37.500 0.00 0.00 0.00 1.40
385 386 5.417580 AGGTTGGTTCGCACATACATTATTT 59.582 36.000 0.00 0.00 0.00 1.40
386 387 6.071616 AGGTTGGTTCGCACATACATTATTTT 60.072 34.615 0.00 0.00 0.00 1.82
387 388 6.588373 GGTTGGTTCGCACATACATTATTTTT 59.412 34.615 0.00 0.00 0.00 1.94
416 417 3.685836 GCGATTAGCCAAATAAACCGT 57.314 42.857 0.00 0.00 40.81 4.83
417 418 3.614588 GCGATTAGCCAAATAAACCGTC 58.385 45.455 0.00 0.00 40.81 4.79
418 419 3.311596 GCGATTAGCCAAATAAACCGTCT 59.688 43.478 0.00 0.00 40.81 4.18
419 420 4.201881 GCGATTAGCCAAATAAACCGTCTT 60.202 41.667 0.00 0.00 40.81 3.01
420 421 5.675323 GCGATTAGCCAAATAAACCGTCTTT 60.675 40.000 0.00 0.00 40.81 2.52
421 422 6.319399 CGATTAGCCAAATAAACCGTCTTTT 58.681 36.000 0.00 0.00 0.00 2.27
422 423 6.250527 CGATTAGCCAAATAAACCGTCTTTTG 59.749 38.462 0.00 0.00 0.00 2.44
423 424 4.251543 AGCCAAATAAACCGTCTTTTGG 57.748 40.909 8.54 8.54 46.97 3.28
424 425 3.639561 AGCCAAATAAACCGTCTTTTGGT 59.360 39.130 13.15 0.70 46.30 3.67
429 430 2.783228 AACCGTCTTTTGGTTCGCA 58.217 47.368 0.00 0.00 46.61 5.10
430 431 0.379316 AACCGTCTTTTGGTTCGCAC 59.621 50.000 0.00 0.00 46.61 5.34
431 432 0.745128 ACCGTCTTTTGGTTCGCACA 60.745 50.000 0.00 0.00 35.82 4.57
432 433 0.591170 CCGTCTTTTGGTTCGCACAT 59.409 50.000 0.00 0.00 0.00 3.21
433 434 1.399727 CCGTCTTTTGGTTCGCACATC 60.400 52.381 0.00 0.00 0.00 3.06
434 435 1.399727 CGTCTTTTGGTTCGCACATCC 60.400 52.381 0.00 0.00 0.00 3.51
435 436 1.606668 GTCTTTTGGTTCGCACATCCA 59.393 47.619 0.00 0.00 0.00 3.41
436 437 2.228822 GTCTTTTGGTTCGCACATCCAT 59.771 45.455 0.00 0.00 0.00 3.41
437 438 2.890311 TCTTTTGGTTCGCACATCCATT 59.110 40.909 0.00 0.00 0.00 3.16
438 439 3.320541 TCTTTTGGTTCGCACATCCATTT 59.679 39.130 0.00 0.00 0.00 2.32
439 440 3.742433 TTTGGTTCGCACATCCATTTT 57.258 38.095 0.00 0.00 0.00 1.82
440 441 3.742433 TTGGTTCGCACATCCATTTTT 57.258 38.095 0.00 0.00 0.00 1.94
472 473 5.438761 GCGATTAGCCAAATAAACCATCT 57.561 39.130 0.00 0.00 40.81 2.90
473 474 5.831997 GCGATTAGCCAAATAAACCATCTT 58.168 37.500 0.00 0.00 40.81 2.40
474 475 6.273071 GCGATTAGCCAAATAAACCATCTTT 58.727 36.000 0.00 0.00 40.81 2.52
475 476 6.756542 GCGATTAGCCAAATAAACCATCTTTT 59.243 34.615 0.00 0.00 40.81 2.27
476 477 7.254084 GCGATTAGCCAAATAAACCATCTTTTG 60.254 37.037 0.00 0.00 40.81 2.44
480 481 4.935205 GCCAAATAAACCATCTTTTGGGTC 59.065 41.667 13.43 0.00 44.50 4.46
481 482 5.167845 CCAAATAAACCATCTTTTGGGTCG 58.832 41.667 5.56 0.00 44.50 4.79
482 483 5.047660 CCAAATAAACCATCTTTTGGGTCGA 60.048 40.000 5.56 0.00 44.50 4.20
483 484 5.897377 AATAAACCATCTTTTGGGTCGAG 57.103 39.130 0.00 0.00 44.50 4.04
484 485 2.951229 AACCATCTTTTGGGTCGAGT 57.049 45.000 0.00 0.00 44.50 4.18
485 486 4.360951 AAACCATCTTTTGGGTCGAGTA 57.639 40.909 0.00 0.00 44.50 2.59
486 487 3.671716 AACCATCTTTTGGGTCGAGTAC 58.328 45.455 0.00 0.00 44.50 2.73
487 488 2.268298 CCATCTTTTGGGTCGAGTACG 58.732 52.381 0.00 0.00 42.33 3.67
488 489 2.353406 CCATCTTTTGGGTCGAGTACGT 60.353 50.000 0.00 0.00 42.33 3.57
489 490 2.427232 TCTTTTGGGTCGAGTACGTG 57.573 50.000 0.00 0.00 40.69 4.49
490 491 1.682854 TCTTTTGGGTCGAGTACGTGT 59.317 47.619 0.00 0.00 40.69 4.49
491 492 2.101249 TCTTTTGGGTCGAGTACGTGTT 59.899 45.455 0.00 0.00 40.69 3.32
492 493 1.855513 TTTGGGTCGAGTACGTGTTG 58.144 50.000 0.00 0.00 40.69 3.33
493 494 0.746063 TTGGGTCGAGTACGTGTTGT 59.254 50.000 0.00 0.00 40.69 3.32
494 495 0.031043 TGGGTCGAGTACGTGTTGTG 59.969 55.000 0.00 0.00 40.69 3.33
495 496 0.031178 GGGTCGAGTACGTGTTGTGT 59.969 55.000 0.00 0.00 40.69 3.72
496 497 1.126079 GGTCGAGTACGTGTTGTGTG 58.874 55.000 0.00 0.00 40.69 3.82
497 498 1.268692 GGTCGAGTACGTGTTGTGTGA 60.269 52.381 0.00 0.00 40.69 3.58
498 499 1.777461 GTCGAGTACGTGTTGTGTGAC 59.223 52.381 0.00 0.00 40.69 3.67
499 500 1.672363 TCGAGTACGTGTTGTGTGACT 59.328 47.619 0.00 0.00 40.69 3.41
500 501 2.871633 TCGAGTACGTGTTGTGTGACTA 59.128 45.455 0.00 0.00 40.69 2.59
501 502 2.969306 CGAGTACGTGTTGTGTGACTAC 59.031 50.000 0.00 0.00 34.56 2.73
502 503 2.969306 GAGTACGTGTTGTGTGACTACG 59.031 50.000 0.00 0.00 40.30 3.51
503 504 1.449418 GTACGTGTTGTGTGACTACGC 59.551 52.381 0.00 0.00 38.23 4.42
504 505 0.179132 ACGTGTTGTGTGACTACGCA 60.179 50.000 0.00 0.00 44.99 5.24
505 506 0.502695 CGTGTTGTGTGACTACGCAG 59.497 55.000 0.00 0.00 46.89 5.18
506 507 0.232303 GTGTTGTGTGACTACGCAGC 59.768 55.000 0.00 0.00 46.89 5.25
507 508 1.487231 GTTGTGTGACTACGCAGCG 59.513 57.895 14.82 14.82 46.89 5.18
508 509 0.937699 GTTGTGTGACTACGCAGCGA 60.938 55.000 24.65 4.11 46.89 4.93
509 510 0.663269 TTGTGTGACTACGCAGCGAG 60.663 55.000 24.65 16.57 46.89 5.03
510 511 1.209383 GTGTGACTACGCAGCGAGA 59.791 57.895 24.65 7.97 37.19 4.04
511 512 0.386858 GTGTGACTACGCAGCGAGAA 60.387 55.000 24.65 5.40 37.19 2.87
512 513 0.386858 TGTGACTACGCAGCGAGAAC 60.387 55.000 24.65 16.62 32.49 3.01
513 514 1.071567 GTGACTACGCAGCGAGAACC 61.072 60.000 24.65 6.90 0.00 3.62
514 515 1.211969 GACTACGCAGCGAGAACCA 59.788 57.895 24.65 0.00 0.00 3.67
515 516 0.388134 GACTACGCAGCGAGAACCAA 60.388 55.000 24.65 0.00 0.00 3.67
516 517 0.032952 ACTACGCAGCGAGAACCAAA 59.967 50.000 24.65 0.00 0.00 3.28
517 518 0.438830 CTACGCAGCGAGAACCAAAC 59.561 55.000 24.65 0.00 0.00 2.93
518 519 0.249531 TACGCAGCGAGAACCAAACA 60.250 50.000 24.65 0.00 0.00 2.83
519 520 1.082756 CGCAGCGAGAACCAAACAC 60.083 57.895 9.98 0.00 0.00 3.32
520 521 1.282875 GCAGCGAGAACCAAACACC 59.717 57.895 0.00 0.00 0.00 4.16
521 522 1.166531 GCAGCGAGAACCAAACACCT 61.167 55.000 0.00 0.00 0.00 4.00
522 523 0.868406 CAGCGAGAACCAAACACCTC 59.132 55.000 0.00 0.00 0.00 3.85
523 524 0.468226 AGCGAGAACCAAACACCTCA 59.532 50.000 0.00 0.00 0.00 3.86
524 525 1.134220 AGCGAGAACCAAACACCTCAA 60.134 47.619 0.00 0.00 0.00 3.02
525 526 1.880027 GCGAGAACCAAACACCTCAAT 59.120 47.619 0.00 0.00 0.00 2.57
526 527 2.293399 GCGAGAACCAAACACCTCAATT 59.707 45.455 0.00 0.00 0.00 2.32
527 528 3.609409 GCGAGAACCAAACACCTCAATTC 60.609 47.826 0.00 0.00 0.00 2.17
528 529 3.815401 CGAGAACCAAACACCTCAATTCT 59.185 43.478 0.00 0.00 0.00 2.40
529 530 4.275936 CGAGAACCAAACACCTCAATTCTT 59.724 41.667 0.00 0.00 0.00 2.52
530 531 5.468746 CGAGAACCAAACACCTCAATTCTTA 59.531 40.000 0.00 0.00 0.00 2.10
531 532 6.347725 CGAGAACCAAACACCTCAATTCTTAG 60.348 42.308 0.00 0.00 0.00 2.18
532 533 6.601332 AGAACCAAACACCTCAATTCTTAGA 58.399 36.000 0.00 0.00 0.00 2.10
533 534 6.486993 AGAACCAAACACCTCAATTCTTAGAC 59.513 38.462 0.00 0.00 0.00 2.59
534 535 5.070685 ACCAAACACCTCAATTCTTAGACC 58.929 41.667 0.00 0.00 0.00 3.85
535 536 4.459337 CCAAACACCTCAATTCTTAGACCC 59.541 45.833 0.00 0.00 0.00 4.46
536 537 4.302559 AACACCTCAATTCTTAGACCCC 57.697 45.455 0.00 0.00 0.00 4.95
537 538 2.576648 ACACCTCAATTCTTAGACCCCC 59.423 50.000 0.00 0.00 0.00 5.40
538 539 2.846827 CACCTCAATTCTTAGACCCCCT 59.153 50.000 0.00 0.00 0.00 4.79
539 540 3.116174 ACCTCAATTCTTAGACCCCCTC 58.884 50.000 0.00 0.00 0.00 4.30
540 541 3.115390 CCTCAATTCTTAGACCCCCTCA 58.885 50.000 0.00 0.00 0.00 3.86
541 542 3.523564 CCTCAATTCTTAGACCCCCTCAA 59.476 47.826 0.00 0.00 0.00 3.02
542 543 4.018415 CCTCAATTCTTAGACCCCCTCAAA 60.018 45.833 0.00 0.00 0.00 2.69
543 544 5.516591 CCTCAATTCTTAGACCCCCTCAAAA 60.517 44.000 0.00 0.00 0.00 2.44
544 545 5.959512 TCAATTCTTAGACCCCCTCAAAAA 58.040 37.500 0.00 0.00 0.00 1.94
583 584 6.618287 TTGTCTTGTACAACAATCTCCAAG 57.382 37.500 3.59 0.00 43.22 3.61
584 585 5.924356 TGTCTTGTACAACAATCTCCAAGA 58.076 37.500 3.59 0.00 37.48 3.02
585 586 6.353323 TGTCTTGTACAACAATCTCCAAGAA 58.647 36.000 3.59 0.00 39.73 2.52
586 587 6.826231 TGTCTTGTACAACAATCTCCAAGAAA 59.174 34.615 3.59 0.00 39.73 2.52
587 588 7.338196 TGTCTTGTACAACAATCTCCAAGAAAA 59.662 33.333 3.59 0.00 39.73 2.29
588 589 7.644157 GTCTTGTACAACAATCTCCAAGAAAAC 59.356 37.037 3.59 0.00 39.73 2.43
589 590 6.055231 TGTACAACAATCTCCAAGAAAACG 57.945 37.500 0.00 0.00 0.00 3.60
590 591 5.587043 TGTACAACAATCTCCAAGAAAACGT 59.413 36.000 0.00 0.00 0.00 3.99
591 592 5.169836 ACAACAATCTCCAAGAAAACGTC 57.830 39.130 0.00 0.00 0.00 4.34
592 593 4.881850 ACAACAATCTCCAAGAAAACGTCT 59.118 37.500 0.00 0.00 38.69 4.18
615 616 4.830600 TTGTACAACAAGGGGAAAGAATCC 59.169 41.667 3.59 0.00 39.29 3.01
616 617 5.399727 TTGTACAACAAGGGGAAAGAATCCT 60.400 40.000 3.59 0.00 39.66 3.24
617 618 6.865722 TTGTACAACAAGGGGAAAGAATCCTT 60.866 38.462 3.59 0.00 39.66 3.36
628 629 5.816682 GGAAAGAATCCTTGGTTAAGAGGA 58.183 41.667 5.01 5.01 45.56 3.71
629 630 6.246163 GGAAAGAATCCTTGGTTAAGAGGAA 58.754 40.000 6.33 0.00 44.73 3.36
630 631 6.375736 GGAAAGAATCCTTGGTTAAGAGGAAG 59.624 42.308 6.33 0.00 44.73 3.46
631 632 6.455690 AAGAATCCTTGGTTAAGAGGAAGT 57.544 37.500 6.33 0.00 44.73 3.01
632 633 7.569599 AAGAATCCTTGGTTAAGAGGAAGTA 57.430 36.000 6.33 0.00 44.73 2.24
633 634 7.189079 AGAATCCTTGGTTAAGAGGAAGTAG 57.811 40.000 6.33 0.00 44.73 2.57
634 635 6.960542 AGAATCCTTGGTTAAGAGGAAGTAGA 59.039 38.462 6.33 0.00 44.73 2.59
635 636 7.458170 AGAATCCTTGGTTAAGAGGAAGTAGAA 59.542 37.037 6.33 0.00 44.73 2.10
636 637 6.356186 TCCTTGGTTAAGAGGAAGTAGAAC 57.644 41.667 0.79 0.00 39.06 3.01
637 638 6.082707 TCCTTGGTTAAGAGGAAGTAGAACT 58.917 40.000 0.79 0.00 39.06 3.01
638 639 6.557633 TCCTTGGTTAAGAGGAAGTAGAACTT 59.442 38.462 0.79 0.00 39.06 2.66
639 640 7.072076 TCCTTGGTTAAGAGGAAGTAGAACTTT 59.928 37.037 0.79 0.00 39.06 2.66
640 641 7.720074 CCTTGGTTAAGAGGAAGTAGAACTTTT 59.280 37.037 0.00 0.00 35.82 2.27
641 642 8.672823 TTGGTTAAGAGGAAGTAGAACTTTTC 57.327 34.615 0.00 0.00 38.80 2.29
642 643 7.222161 TGGTTAAGAGGAAGTAGAACTTTTCC 58.778 38.462 8.66 8.66 38.80 3.13
770 783 6.602406 AGAGACTAATAACCAGACGAAAGCTA 59.398 38.462 0.00 0.00 0.00 3.32
771 784 6.797454 AGACTAATAACCAGACGAAAGCTAG 58.203 40.000 0.00 0.00 0.00 3.42
772 785 5.349809 ACTAATAACCAGACGAAAGCTAGC 58.650 41.667 6.62 6.62 0.00 3.42
773 786 4.473477 AATAACCAGACGAAAGCTAGCT 57.527 40.909 12.68 12.68 0.00 3.32
834 849 1.949133 GGCGATGCGTGCGATTCTA 60.949 57.895 0.00 0.00 0.00 2.10
891 914 8.229253 TCGAACAACCTACGGCATATATATAT 57.771 34.615 0.00 0.00 0.00 0.86
892 915 9.341078 TCGAACAACCTACGGCATATATATATA 57.659 33.333 4.90 4.92 0.00 0.86
893 916 9.390795 CGAACAACCTACGGCATATATATATAC 57.609 37.037 4.54 0.00 0.00 1.47
897 920 9.459640 CAACCTACGGCATATATATATACACAC 57.540 37.037 4.54 0.00 0.00 3.82
920 943 2.292569 CCGTAGCTAGCTAATCCGTTCA 59.707 50.000 25.74 0.00 0.00 3.18
923 946 3.444703 AGCTAGCTAATCCGTTCACAG 57.555 47.619 17.69 0.00 0.00 3.66
953 976 8.834749 ATTAATTAGCCTCTTCGATCTAAACC 57.165 34.615 0.00 0.00 0.00 3.27
954 977 2.873133 AGCCTCTTCGATCTAAACCG 57.127 50.000 0.00 0.00 0.00 4.44
1107 1139 1.134037 GTGACCAAGTTGTACACCCCA 60.134 52.381 14.64 0.00 0.00 4.96
1218 1277 1.375396 CCAATTCCTCGACGCCACA 60.375 57.895 0.00 0.00 0.00 4.17
1249 1314 1.755621 CGGTGATCCATCTCCAGGAGA 60.756 57.143 22.14 22.14 43.20 3.71
1768 1905 2.855963 CGCGGTGTCGTTATTAGTCATT 59.144 45.455 0.00 0.00 38.89 2.57
1769 1906 3.061403 CGCGGTGTCGTTATTAGTCATTC 60.061 47.826 0.00 0.00 38.89 2.67
1960 2103 1.873591 GAACCAAGAAAAGCAGCGAGA 59.126 47.619 0.00 0.00 0.00 4.04
2087 2240 9.625747 TCACCATGCTTTGATTATATTACTTCA 57.374 29.630 0.00 0.00 0.00 3.02
2102 2255 0.395311 CTTCATGCATGCTGTCCCCT 60.395 55.000 22.25 0.00 0.00 4.79
2163 2319 5.652452 AGGTAAGTATGGCAATTTGGAAGTC 59.348 40.000 0.00 0.00 0.00 3.01
2166 2322 6.610075 AAGTATGGCAATTTGGAAGTCAAT 57.390 33.333 0.00 0.00 34.98 2.57
2182 2338 9.362151 TGGAAGTCAATGGTCTAAATTTTACTT 57.638 29.630 0.00 0.00 0.00 2.24
2183 2339 9.841880 GGAAGTCAATGGTCTAAATTTTACTTC 57.158 33.333 0.00 0.00 37.08 3.01
2198 2354 2.200373 ACTTCCAGCGCCAAGTTTAT 57.800 45.000 2.29 0.00 27.81 1.40
2523 2875 1.832883 AGCCGGCACAACATATTGAA 58.167 45.000 31.54 0.00 39.30 2.69
2530 2882 5.159925 CGGCACAACATATTGAAATTGACA 58.840 37.500 0.00 0.00 39.30 3.58
2553 2905 1.796459 GTTACCACACGCCTTGTAGTG 59.204 52.381 0.00 0.00 43.46 2.74
2573 2925 2.184579 CGGGAACTTCTCCTCCGC 59.815 66.667 0.00 0.00 44.68 5.54
2690 3060 8.792633 TCAACTTGGGAGTTAAATTGTATGAAG 58.207 33.333 0.00 0.00 44.14 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 9.362151 TCACTTAAAATTTAGGCCCTTATATGG 57.638 33.333 0.00 0.00 0.00 2.74
12 13 9.280174 CGATCACTTAAAATTTAGGCCCTTATA 57.720 33.333 0.00 0.00 0.00 0.98
13 14 7.230712 CCGATCACTTAAAATTTAGGCCCTTAT 59.769 37.037 0.00 0.00 0.00 1.73
14 15 6.544564 CCGATCACTTAAAATTTAGGCCCTTA 59.455 38.462 0.00 0.00 0.00 2.69
15 16 5.359860 CCGATCACTTAAAATTTAGGCCCTT 59.640 40.000 0.00 0.00 0.00 3.95
16 17 4.887655 CCGATCACTTAAAATTTAGGCCCT 59.112 41.667 0.00 0.00 0.00 5.19
17 18 4.643334 ACCGATCACTTAAAATTTAGGCCC 59.357 41.667 0.00 0.00 0.00 5.80
18 19 5.830000 ACCGATCACTTAAAATTTAGGCC 57.170 39.130 0.00 0.00 0.00 5.19
19 20 8.205131 TCTAACCGATCACTTAAAATTTAGGC 57.795 34.615 0.00 0.00 0.00 3.93
20 21 9.595823 TCTCTAACCGATCACTTAAAATTTAGG 57.404 33.333 0.00 0.00 0.00 2.69
23 24 8.398665 GCATCTCTAACCGATCACTTAAAATTT 58.601 33.333 0.00 0.00 0.00 1.82
24 25 7.770897 AGCATCTCTAACCGATCACTTAAAATT 59.229 33.333 0.00 0.00 0.00 1.82
25 26 7.275920 AGCATCTCTAACCGATCACTTAAAAT 58.724 34.615 0.00 0.00 0.00 1.82
26 27 6.640518 AGCATCTCTAACCGATCACTTAAAA 58.359 36.000 0.00 0.00 0.00 1.52
27 28 6.222038 AGCATCTCTAACCGATCACTTAAA 57.778 37.500 0.00 0.00 0.00 1.52
28 29 5.833082 GAGCATCTCTAACCGATCACTTAA 58.167 41.667 0.00 0.00 0.00 1.85
29 30 5.440234 GAGCATCTCTAACCGATCACTTA 57.560 43.478 0.00 0.00 0.00 2.24
30 31 4.314740 GAGCATCTCTAACCGATCACTT 57.685 45.455 0.00 0.00 0.00 3.16
45 46 5.580297 TGTTTGTTTGGTTTCAAAGAGCATC 59.420 36.000 0.00 0.00 42.78 3.91
46 47 5.486526 TGTTTGTTTGGTTTCAAAGAGCAT 58.513 33.333 0.00 0.00 42.78 3.79
47 48 4.887748 TGTTTGTTTGGTTTCAAAGAGCA 58.112 34.783 0.00 0.00 42.78 4.26
48 49 6.421377 AATGTTTGTTTGGTTTCAAAGAGC 57.579 33.333 0.00 0.00 42.78 4.09
72 73 9.727859 TGGCTATGTCTGTACTATGTTTAAAAA 57.272 29.630 0.00 0.00 0.00 1.94
73 74 9.158233 GTGGCTATGTCTGTACTATGTTTAAAA 57.842 33.333 0.00 0.00 0.00 1.52
74 75 8.315482 TGTGGCTATGTCTGTACTATGTTTAAA 58.685 33.333 0.00 0.00 0.00 1.52
75 76 7.762615 GTGTGGCTATGTCTGTACTATGTTTAA 59.237 37.037 0.00 0.00 0.00 1.52
76 77 7.093684 TGTGTGGCTATGTCTGTACTATGTTTA 60.094 37.037 0.00 0.00 0.00 2.01
77 78 6.106673 GTGTGGCTATGTCTGTACTATGTTT 58.893 40.000 0.00 0.00 0.00 2.83
78 79 5.186992 TGTGTGGCTATGTCTGTACTATGTT 59.813 40.000 0.00 0.00 0.00 2.71
79 80 4.709886 TGTGTGGCTATGTCTGTACTATGT 59.290 41.667 0.00 0.00 0.00 2.29
80 81 5.262588 TGTGTGGCTATGTCTGTACTATG 57.737 43.478 0.00 0.00 0.00 2.23
81 82 4.342378 CCTGTGTGGCTATGTCTGTACTAT 59.658 45.833 0.00 0.00 0.00 2.12
82 83 3.699538 CCTGTGTGGCTATGTCTGTACTA 59.300 47.826 0.00 0.00 0.00 1.82
83 84 2.497675 CCTGTGTGGCTATGTCTGTACT 59.502 50.000 0.00 0.00 0.00 2.73
84 85 2.893637 CCTGTGTGGCTATGTCTGTAC 58.106 52.381 0.00 0.00 0.00 2.90
96 97 4.991056 GTGTATATATGAGTGCCTGTGTGG 59.009 45.833 0.00 0.00 39.35 4.17
97 98 4.681483 CGTGTATATATGAGTGCCTGTGTG 59.319 45.833 0.00 0.00 0.00 3.82
98 99 4.796290 GCGTGTATATATGAGTGCCTGTGT 60.796 45.833 0.00 0.00 0.00 3.72
99 100 3.675225 GCGTGTATATATGAGTGCCTGTG 59.325 47.826 0.00 0.00 0.00 3.66
100 101 3.611766 CGCGTGTATATATGAGTGCCTGT 60.612 47.826 0.00 0.00 0.00 4.00
101 102 2.917343 CGCGTGTATATATGAGTGCCTG 59.083 50.000 0.00 0.00 0.00 4.85
102 103 2.557056 ACGCGTGTATATATGAGTGCCT 59.443 45.455 12.93 0.00 0.00 4.75
103 104 2.942710 ACGCGTGTATATATGAGTGCC 58.057 47.619 12.93 0.00 0.00 5.01
104 105 6.484540 AGTATACGCGTGTATATATGAGTGC 58.515 40.000 26.67 14.09 43.52 4.40
105 106 7.635202 GTGAGTATACGCGTGTATATATGAGTG 59.365 40.741 26.67 0.00 43.52 3.51
106 107 7.201591 GGTGAGTATACGCGTGTATATATGAGT 60.202 40.741 26.67 12.67 43.52 3.41
107 108 7.011202 AGGTGAGTATACGCGTGTATATATGAG 59.989 40.741 26.67 0.00 43.52 2.90
108 109 6.820152 AGGTGAGTATACGCGTGTATATATGA 59.180 38.462 26.67 13.53 43.52 2.15
109 110 7.011202 AGAGGTGAGTATACGCGTGTATATATG 59.989 40.741 26.67 0.00 43.52 1.78
110 111 7.046652 AGAGGTGAGTATACGCGTGTATATAT 58.953 38.462 26.67 19.69 43.52 0.86
111 112 6.401394 AGAGGTGAGTATACGCGTGTATATA 58.599 40.000 26.67 15.88 43.52 0.86
112 113 5.243981 AGAGGTGAGTATACGCGTGTATAT 58.756 41.667 26.67 17.34 43.52 0.86
113 114 4.635223 AGAGGTGAGTATACGCGTGTATA 58.365 43.478 24.59 21.82 41.50 1.47
114 115 3.474600 AGAGGTGAGTATACGCGTGTAT 58.525 45.455 24.59 23.84 43.62 2.29
115 116 2.910199 AGAGGTGAGTATACGCGTGTA 58.090 47.619 24.59 18.01 34.45 2.90
116 117 1.747709 AGAGGTGAGTATACGCGTGT 58.252 50.000 24.59 19.31 0.00 4.49
117 118 3.497262 TCATAGAGGTGAGTATACGCGTG 59.503 47.826 24.59 0.00 0.00 5.34
118 119 3.736720 TCATAGAGGTGAGTATACGCGT 58.263 45.455 19.17 19.17 0.00 6.01
119 120 4.024302 TGTTCATAGAGGTGAGTATACGCG 60.024 45.833 3.53 3.53 0.00 6.01
120 121 5.213675 GTGTTCATAGAGGTGAGTATACGC 58.786 45.833 0.00 0.00 0.00 4.42
121 122 6.183360 TGTGTGTTCATAGAGGTGAGTATACG 60.183 42.308 0.00 0.00 0.00 3.06
122 123 7.096884 TGTGTGTTCATAGAGGTGAGTATAC 57.903 40.000 0.00 0.00 0.00 1.47
123 124 7.014326 GGATGTGTGTTCATAGAGGTGAGTATA 59.986 40.741 0.00 0.00 0.00 1.47
124 125 6.183360 GGATGTGTGTTCATAGAGGTGAGTAT 60.183 42.308 0.00 0.00 0.00 2.12
125 126 5.127194 GGATGTGTGTTCATAGAGGTGAGTA 59.873 44.000 0.00 0.00 0.00 2.59
126 127 4.081420 GGATGTGTGTTCATAGAGGTGAGT 60.081 45.833 0.00 0.00 0.00 3.41
127 128 4.161189 AGGATGTGTGTTCATAGAGGTGAG 59.839 45.833 0.00 0.00 0.00 3.51
128 129 4.096681 AGGATGTGTGTTCATAGAGGTGA 58.903 43.478 0.00 0.00 0.00 4.02
129 130 4.478206 AGGATGTGTGTTCATAGAGGTG 57.522 45.455 0.00 0.00 0.00 4.00
130 131 4.406003 GGTAGGATGTGTGTTCATAGAGGT 59.594 45.833 0.00 0.00 0.00 3.85
131 132 4.202264 GGGTAGGATGTGTGTTCATAGAGG 60.202 50.000 0.00 0.00 0.00 3.69
132 133 4.202264 GGGGTAGGATGTGTGTTCATAGAG 60.202 50.000 0.00 0.00 0.00 2.43
133 134 3.709653 GGGGTAGGATGTGTGTTCATAGA 59.290 47.826 0.00 0.00 0.00 1.98
134 135 3.454447 TGGGGTAGGATGTGTGTTCATAG 59.546 47.826 0.00 0.00 0.00 2.23
135 136 3.455849 TGGGGTAGGATGTGTGTTCATA 58.544 45.455 0.00 0.00 0.00 2.15
136 137 2.274542 TGGGGTAGGATGTGTGTTCAT 58.725 47.619 0.00 0.00 0.00 2.57
137 138 1.735926 TGGGGTAGGATGTGTGTTCA 58.264 50.000 0.00 0.00 0.00 3.18
138 139 2.238646 TCATGGGGTAGGATGTGTGTTC 59.761 50.000 0.00 0.00 0.00 3.18
139 140 2.239654 CTCATGGGGTAGGATGTGTGTT 59.760 50.000 0.00 0.00 0.00 3.32
140 141 1.839994 CTCATGGGGTAGGATGTGTGT 59.160 52.381 0.00 0.00 0.00 3.72
141 142 1.141657 CCTCATGGGGTAGGATGTGTG 59.858 57.143 2.32 0.00 34.58 3.82
142 143 1.009552 TCCTCATGGGGTAGGATGTGT 59.990 52.381 12.53 0.00 36.97 3.72
143 144 1.417890 GTCCTCATGGGGTAGGATGTG 59.582 57.143 12.53 0.00 43.63 3.21
144 145 1.695989 GGTCCTCATGGGGTAGGATGT 60.696 57.143 12.53 0.00 43.63 3.06
145 146 1.059913 GGTCCTCATGGGGTAGGATG 58.940 60.000 12.53 0.00 43.63 3.51
146 147 0.952659 AGGTCCTCATGGGGTAGGAT 59.047 55.000 12.53 0.00 43.63 3.24
147 148 0.264955 GAGGTCCTCATGGGGTAGGA 59.735 60.000 12.53 3.90 39.63 2.94
148 149 0.266152 AGAGGTCCTCATGGGGTAGG 59.734 60.000 21.26 1.05 35.33 3.18
149 150 1.062886 TCAGAGGTCCTCATGGGGTAG 60.063 57.143 21.26 0.00 35.33 3.18
150 151 1.015609 TCAGAGGTCCTCATGGGGTA 58.984 55.000 21.26 0.00 35.33 3.69
151 152 0.326048 CTCAGAGGTCCTCATGGGGT 60.326 60.000 21.26 0.00 35.33 4.95
152 153 0.031716 TCTCAGAGGTCCTCATGGGG 60.032 60.000 21.26 4.76 35.33 4.96
153 154 1.342874 ACTCTCAGAGGTCCTCATGGG 60.343 57.143 21.26 15.08 33.35 4.00
154 155 2.031120 GACTCTCAGAGGTCCTCATGG 58.969 57.143 21.26 9.92 33.35 3.66
155 156 3.017048 AGACTCTCAGAGGTCCTCATG 57.983 52.381 21.26 15.08 33.35 3.07
156 157 4.792068 CTTAGACTCTCAGAGGTCCTCAT 58.208 47.826 21.26 3.45 33.35 2.90
157 158 3.623703 GCTTAGACTCTCAGAGGTCCTCA 60.624 52.174 21.26 0.00 33.35 3.86
158 159 2.949644 GCTTAGACTCTCAGAGGTCCTC 59.050 54.545 11.31 11.31 33.35 3.71
159 160 2.580783 AGCTTAGACTCTCAGAGGTCCT 59.419 50.000 6.64 2.82 33.35 3.85
160 161 2.687935 CAGCTTAGACTCTCAGAGGTCC 59.312 54.545 6.64 0.00 33.35 4.46
161 162 2.687935 CCAGCTTAGACTCTCAGAGGTC 59.312 54.545 6.64 9.82 33.35 3.85
162 163 2.042433 ACCAGCTTAGACTCTCAGAGGT 59.958 50.000 6.64 0.00 33.35 3.85
163 164 2.733956 ACCAGCTTAGACTCTCAGAGG 58.266 52.381 6.64 0.00 33.35 3.69
164 165 6.939730 TGATATACCAGCTTAGACTCTCAGAG 59.060 42.308 0.00 0.00 35.52 3.35
165 166 6.842676 TGATATACCAGCTTAGACTCTCAGA 58.157 40.000 0.00 0.00 0.00 3.27
166 167 7.611467 AGATGATATACCAGCTTAGACTCTCAG 59.389 40.741 0.00 0.00 26.57 3.35
167 168 7.465960 AGATGATATACCAGCTTAGACTCTCA 58.534 38.462 0.00 0.00 26.57 3.27
168 169 7.938140 AGATGATATACCAGCTTAGACTCTC 57.062 40.000 0.00 0.00 26.57 3.20
169 170 7.947332 TCAAGATGATATACCAGCTTAGACTCT 59.053 37.037 0.00 0.00 40.37 3.24
170 171 8.116651 TCAAGATGATATACCAGCTTAGACTC 57.883 38.462 0.00 0.00 40.37 3.36
171 172 7.947332 TCTCAAGATGATATACCAGCTTAGACT 59.053 37.037 0.00 0.00 40.37 3.24
172 173 8.116651 TCTCAAGATGATATACCAGCTTAGAC 57.883 38.462 0.00 0.00 40.37 2.59
173 174 8.891985 ATCTCAAGATGATATACCAGCTTAGA 57.108 34.615 0.00 2.63 40.37 2.10
174 175 9.368674 CAATCTCAAGATGATATACCAGCTTAG 57.631 37.037 0.00 0.00 40.37 2.18
175 176 9.093458 TCAATCTCAAGATGATATACCAGCTTA 57.907 33.333 0.00 0.00 40.37 3.09
176 177 7.877097 GTCAATCTCAAGATGATATACCAGCTT 59.123 37.037 0.00 0.00 42.75 3.74
177 178 7.385267 GTCAATCTCAAGATGATATACCAGCT 58.615 38.462 0.00 0.00 34.49 4.24
178 179 6.309980 CGTCAATCTCAAGATGATATACCAGC 59.690 42.308 0.00 0.00 34.49 4.85
179 180 7.597386 TCGTCAATCTCAAGATGATATACCAG 58.403 38.462 0.00 0.00 34.49 4.00
180 181 7.524717 TCGTCAATCTCAAGATGATATACCA 57.475 36.000 0.00 0.00 34.49 3.25
181 182 8.818141 TTTCGTCAATCTCAAGATGATATACC 57.182 34.615 0.00 0.00 34.49 2.73
182 183 8.431593 GCTTTCGTCAATCTCAAGATGATATAC 58.568 37.037 0.00 0.00 34.49 1.47
183 184 8.143835 TGCTTTCGTCAATCTCAAGATGATATA 58.856 33.333 0.00 0.00 34.49 0.86
184 185 6.988580 TGCTTTCGTCAATCTCAAGATGATAT 59.011 34.615 0.00 0.00 34.49 1.63
185 186 6.256539 GTGCTTTCGTCAATCTCAAGATGATA 59.743 38.462 0.00 0.00 34.49 2.15
186 187 5.064452 GTGCTTTCGTCAATCTCAAGATGAT 59.936 40.000 0.00 0.00 34.49 2.45
187 188 4.389992 GTGCTTTCGTCAATCTCAAGATGA 59.610 41.667 0.00 0.00 34.49 2.92
188 189 4.436584 GGTGCTTTCGTCAATCTCAAGATG 60.437 45.833 0.00 0.00 34.49 2.90
189 190 3.686726 GGTGCTTTCGTCAATCTCAAGAT 59.313 43.478 0.00 0.00 36.07 2.40
190 191 3.067106 GGTGCTTTCGTCAATCTCAAGA 58.933 45.455 0.00 0.00 0.00 3.02
191 192 2.807967 TGGTGCTTTCGTCAATCTCAAG 59.192 45.455 0.00 0.00 0.00 3.02
192 193 2.844946 TGGTGCTTTCGTCAATCTCAA 58.155 42.857 0.00 0.00 0.00 3.02
193 194 2.542020 TGGTGCTTTCGTCAATCTCA 57.458 45.000 0.00 0.00 0.00 3.27
194 195 3.557595 CCTATGGTGCTTTCGTCAATCTC 59.442 47.826 0.00 0.00 0.00 2.75
195 196 3.055094 ACCTATGGTGCTTTCGTCAATCT 60.055 43.478 0.00 0.00 32.98 2.40
196 197 3.270877 ACCTATGGTGCTTTCGTCAATC 58.729 45.455 0.00 0.00 32.98 2.67
197 198 3.350219 ACCTATGGTGCTTTCGTCAAT 57.650 42.857 0.00 0.00 32.98 2.57
198 199 2.851263 ACCTATGGTGCTTTCGTCAA 57.149 45.000 0.00 0.00 32.98 3.18
209 210 1.063867 AGACTACGAGGCACCTATGGT 60.064 52.381 0.00 0.00 35.62 3.55
210 211 1.338337 CAGACTACGAGGCACCTATGG 59.662 57.143 0.00 0.00 0.00 2.74
211 212 1.269309 GCAGACTACGAGGCACCTATG 60.269 57.143 0.00 0.00 0.00 2.23
212 213 1.033574 GCAGACTACGAGGCACCTAT 58.966 55.000 0.00 0.00 0.00 2.57
213 214 1.374343 CGCAGACTACGAGGCACCTA 61.374 60.000 0.00 0.00 0.00 3.08
214 215 2.701780 CGCAGACTACGAGGCACCT 61.702 63.158 0.00 0.00 0.00 4.00
215 216 2.202623 CGCAGACTACGAGGCACC 60.203 66.667 0.00 0.00 0.00 5.01
216 217 2.875485 TCGCAGACTACGAGGCAC 59.125 61.111 0.00 0.00 33.96 5.01
221 222 2.352034 GAGACATTCTCGCAGACTACGA 59.648 50.000 0.00 0.00 33.35 3.43
222 223 2.539953 GGAGACATTCTCGCAGACTACG 60.540 54.545 0.00 0.00 44.28 3.51
223 224 2.685897 AGGAGACATTCTCGCAGACTAC 59.314 50.000 0.00 0.00 44.28 2.73
224 225 2.946329 GAGGAGACATTCTCGCAGACTA 59.054 50.000 0.00 0.00 44.28 2.59
225 226 1.748493 GAGGAGACATTCTCGCAGACT 59.252 52.381 0.00 0.00 44.28 3.24
226 227 1.202359 GGAGGAGACATTCTCGCAGAC 60.202 57.143 0.00 0.00 44.28 3.51
227 228 1.107114 GGAGGAGACATTCTCGCAGA 58.893 55.000 0.00 0.00 44.28 4.26
228 229 0.103937 GGGAGGAGACATTCTCGCAG 59.896 60.000 0.00 0.00 44.28 5.18
229 230 0.614697 TGGGAGGAGACATTCTCGCA 60.615 55.000 6.08 6.08 44.28 5.10
230 231 0.179097 GTGGGAGGAGACATTCTCGC 60.179 60.000 0.00 0.00 44.28 5.03
231 232 1.135915 CAGTGGGAGGAGACATTCTCG 59.864 57.143 0.00 0.00 44.28 4.04
232 233 2.461695 TCAGTGGGAGGAGACATTCTC 58.538 52.381 0.00 0.00 42.66 2.87
233 234 2.630889 TCAGTGGGAGGAGACATTCT 57.369 50.000 0.00 0.00 0.00 2.40
234 235 3.539604 CATTCAGTGGGAGGAGACATTC 58.460 50.000 0.00 0.00 0.00 2.67
235 236 2.240667 CCATTCAGTGGGAGGAGACATT 59.759 50.000 0.00 0.00 44.79 2.71
236 237 1.842562 CCATTCAGTGGGAGGAGACAT 59.157 52.381 0.00 0.00 44.79 3.06
237 238 1.279496 CCATTCAGTGGGAGGAGACA 58.721 55.000 0.00 0.00 44.79 3.41
247 248 1.721664 CCAGCGATGCCCATTCAGTG 61.722 60.000 0.00 0.00 0.00 3.66
248 249 1.452651 CCAGCGATGCCCATTCAGT 60.453 57.895 0.00 0.00 0.00 3.41
249 250 0.749091 TTCCAGCGATGCCCATTCAG 60.749 55.000 0.00 0.00 0.00 3.02
250 251 0.323269 TTTCCAGCGATGCCCATTCA 60.323 50.000 0.00 0.00 0.00 2.57
251 252 0.817013 TTTTCCAGCGATGCCCATTC 59.183 50.000 0.00 0.00 0.00 2.67
252 253 1.410153 GATTTTCCAGCGATGCCCATT 59.590 47.619 0.00 0.00 0.00 3.16
253 254 1.035139 GATTTTCCAGCGATGCCCAT 58.965 50.000 0.00 0.00 0.00 4.00
254 255 1.375853 CGATTTTCCAGCGATGCCCA 61.376 55.000 0.00 0.00 0.00 5.36
255 256 1.356624 CGATTTTCCAGCGATGCCC 59.643 57.895 0.00 0.00 0.00 5.36
256 257 0.248215 CACGATTTTCCAGCGATGCC 60.248 55.000 0.00 0.00 0.00 4.40
257 258 0.726827 TCACGATTTTCCAGCGATGC 59.273 50.000 0.00 0.00 0.00 3.91
258 259 3.469899 TTTCACGATTTTCCAGCGATG 57.530 42.857 0.00 0.00 0.00 3.84
259 260 7.148407 GGATATATTTCACGATTTTCCAGCGAT 60.148 37.037 0.00 0.00 0.00 4.58
260 261 6.147164 GGATATATTTCACGATTTTCCAGCGA 59.853 38.462 0.00 0.00 0.00 4.93
261 262 6.073276 TGGATATATTTCACGATTTTCCAGCG 60.073 38.462 0.00 0.00 0.00 5.18
262 263 7.202016 TGGATATATTTCACGATTTTCCAGC 57.798 36.000 0.00 0.00 0.00 4.85
263 264 7.661437 TCCTGGATATATTTCACGATTTTCCAG 59.339 37.037 7.92 7.92 44.64 3.86
264 265 7.513856 TCCTGGATATATTTCACGATTTTCCA 58.486 34.615 0.00 0.00 0.00 3.53
265 266 7.979444 TCCTGGATATATTTCACGATTTTCC 57.021 36.000 0.00 0.00 0.00 3.13
269 270 9.113838 GCATTATCCTGGATATATTTCACGATT 57.886 33.333 16.80 0.00 0.00 3.34
270 271 8.267183 TGCATTATCCTGGATATATTTCACGAT 58.733 33.333 16.80 2.06 0.00 3.73
271 272 7.619965 TGCATTATCCTGGATATATTTCACGA 58.380 34.615 16.80 0.00 0.00 4.35
272 273 7.848223 TGCATTATCCTGGATATATTTCACG 57.152 36.000 16.80 0.00 0.00 4.35
273 274 8.186821 GCTTGCATTATCCTGGATATATTTCAC 58.813 37.037 16.80 2.78 0.00 3.18
274 275 7.889600 TGCTTGCATTATCCTGGATATATTTCA 59.110 33.333 16.80 8.40 0.00 2.69
275 276 8.186821 GTGCTTGCATTATCCTGGATATATTTC 58.813 37.037 16.80 6.23 0.00 2.17
276 277 7.123247 GGTGCTTGCATTATCCTGGATATATTT 59.877 37.037 16.80 0.98 0.00 1.40
277 278 6.604795 GGTGCTTGCATTATCCTGGATATATT 59.395 38.462 16.80 3.30 0.00 1.28
278 279 6.069206 AGGTGCTTGCATTATCCTGGATATAT 60.069 38.462 16.80 10.42 0.00 0.86
279 280 5.251468 AGGTGCTTGCATTATCCTGGATATA 59.749 40.000 16.80 8.72 0.00 0.86
280 281 4.043812 AGGTGCTTGCATTATCCTGGATAT 59.956 41.667 16.80 5.25 0.00 1.63
281 282 3.395607 AGGTGCTTGCATTATCCTGGATA 59.604 43.478 12.38 12.38 0.00 2.59
282 283 2.176364 AGGTGCTTGCATTATCCTGGAT 59.824 45.455 14.66 14.66 0.00 3.41
283 284 1.565759 AGGTGCTTGCATTATCCTGGA 59.434 47.619 0.00 0.00 0.00 3.86
284 285 1.679680 CAGGTGCTTGCATTATCCTGG 59.320 52.381 17.15 0.00 38.81 4.45
285 286 1.679680 CCAGGTGCTTGCATTATCCTG 59.320 52.381 17.69 17.69 41.17 3.86
286 287 1.565759 TCCAGGTGCTTGCATTATCCT 59.434 47.619 0.00 0.00 0.00 3.24
287 288 1.678101 GTCCAGGTGCTTGCATTATCC 59.322 52.381 0.00 0.00 0.00 2.59
288 289 2.648059 AGTCCAGGTGCTTGCATTATC 58.352 47.619 0.00 0.00 0.00 1.75
289 290 2.756760 CAAGTCCAGGTGCTTGCATTAT 59.243 45.455 11.66 0.00 36.17 1.28
290 291 2.161855 CAAGTCCAGGTGCTTGCATTA 58.838 47.619 11.66 0.00 36.17 1.90
291 292 0.963962 CAAGTCCAGGTGCTTGCATT 59.036 50.000 11.66 0.00 36.17 3.56
292 293 0.111061 TCAAGTCCAGGTGCTTGCAT 59.889 50.000 16.66 0.00 41.15 3.96
293 294 0.106769 TTCAAGTCCAGGTGCTTGCA 60.107 50.000 16.66 7.76 41.15 4.08
294 295 0.312102 GTTCAAGTCCAGGTGCTTGC 59.688 55.000 16.66 5.54 41.15 4.01
295 296 0.954452 GGTTCAAGTCCAGGTGCTTG 59.046 55.000 15.82 15.82 42.32 4.01
296 297 0.178990 GGGTTCAAGTCCAGGTGCTT 60.179 55.000 0.00 0.00 0.00 3.91
297 298 1.062488 AGGGTTCAAGTCCAGGTGCT 61.062 55.000 0.00 0.00 0.00 4.40
298 299 0.890996 CAGGGTTCAAGTCCAGGTGC 60.891 60.000 0.00 0.00 0.00 5.01
299 300 0.250901 CCAGGGTTCAAGTCCAGGTG 60.251 60.000 0.00 0.00 0.00 4.00
300 301 0.697854 ACCAGGGTTCAAGTCCAGGT 60.698 55.000 0.00 0.00 32.64 4.00
301 302 0.250901 CACCAGGGTTCAAGTCCAGG 60.251 60.000 0.00 0.00 0.00 4.45
302 303 0.250901 CCACCAGGGTTCAAGTCCAG 60.251 60.000 0.00 0.00 0.00 3.86
303 304 1.843421 CCACCAGGGTTCAAGTCCA 59.157 57.895 0.00 0.00 0.00 4.02
304 305 4.821935 CCACCAGGGTTCAAGTCC 57.178 61.111 0.00 0.00 0.00 3.85
315 316 2.445845 TATCCTCGGCCCCACCAG 60.446 66.667 0.00 0.00 39.03 4.00
316 317 2.766651 GTATCCTCGGCCCCACCA 60.767 66.667 0.00 0.00 39.03 4.17
317 318 3.925090 CGTATCCTCGGCCCCACC 61.925 72.222 0.00 0.00 0.00 4.61
318 319 2.836360 TCGTATCCTCGGCCCCAC 60.836 66.667 0.00 0.00 0.00 4.61
319 320 2.836360 GTCGTATCCTCGGCCCCA 60.836 66.667 0.00 0.00 0.00 4.96
320 321 0.825010 TAAGTCGTATCCTCGGCCCC 60.825 60.000 0.00 0.00 35.98 5.80
321 322 0.313357 GTAAGTCGTATCCTCGGCCC 59.687 60.000 0.00 0.00 35.98 5.80
322 323 0.313357 GGTAAGTCGTATCCTCGGCC 59.687 60.000 0.00 0.00 35.98 6.13
323 324 1.266446 GAGGTAAGTCGTATCCTCGGC 59.734 57.143 0.00 0.00 37.35 5.54
326 327 6.939163 TGGTTATAGAGGTAAGTCGTATCCTC 59.061 42.308 0.00 0.00 44.61 3.71
327 328 6.845908 TGGTTATAGAGGTAAGTCGTATCCT 58.154 40.000 0.00 0.00 0.00 3.24
328 329 7.148103 GGATGGTTATAGAGGTAAGTCGTATCC 60.148 44.444 0.00 0.00 0.00 2.59
329 330 7.392673 TGGATGGTTATAGAGGTAAGTCGTATC 59.607 40.741 0.00 0.00 0.00 2.24
330 331 7.236529 TGGATGGTTATAGAGGTAAGTCGTAT 58.763 38.462 0.00 0.00 0.00 3.06
331 332 6.604171 TGGATGGTTATAGAGGTAAGTCGTA 58.396 40.000 0.00 0.00 0.00 3.43
332 333 5.452255 TGGATGGTTATAGAGGTAAGTCGT 58.548 41.667 0.00 0.00 0.00 4.34
333 334 6.401047 TTGGATGGTTATAGAGGTAAGTCG 57.599 41.667 0.00 0.00 0.00 4.18
334 335 7.963532 TGATTGGATGGTTATAGAGGTAAGTC 58.036 38.462 0.00 0.00 0.00 3.01
335 336 7.931015 TGATTGGATGGTTATAGAGGTAAGT 57.069 36.000 0.00 0.00 0.00 2.24
337 338 9.046846 CCTATGATTGGATGGTTATAGAGGTAA 57.953 37.037 0.00 0.00 0.00 2.85
338 339 8.184249 ACCTATGATTGGATGGTTATAGAGGTA 58.816 37.037 0.00 0.00 0.00 3.08
339 340 7.025620 ACCTATGATTGGATGGTTATAGAGGT 58.974 38.462 0.00 0.00 0.00 3.85
340 341 7.502060 ACCTATGATTGGATGGTTATAGAGG 57.498 40.000 0.00 0.00 0.00 3.69
341 342 8.783833 CAACCTATGATTGGATGGTTATAGAG 57.216 38.462 0.00 0.00 38.76 2.43
354 355 2.746904 TGTGCGAACCAACCTATGATTG 59.253 45.455 0.00 0.00 0.00 2.67
355 356 3.066291 TGTGCGAACCAACCTATGATT 57.934 42.857 0.00 0.00 0.00 2.57
356 357 2.779755 TGTGCGAACCAACCTATGAT 57.220 45.000 0.00 0.00 0.00 2.45
357 358 2.779755 ATGTGCGAACCAACCTATGA 57.220 45.000 0.00 0.00 0.00 2.15
358 359 3.266636 TGTATGTGCGAACCAACCTATG 58.733 45.455 0.00 0.00 0.00 2.23
359 360 3.620427 TGTATGTGCGAACCAACCTAT 57.380 42.857 0.00 0.00 0.00 2.57
360 361 3.620427 ATGTATGTGCGAACCAACCTA 57.380 42.857 0.00 0.00 0.00 3.08
361 362 2.489938 ATGTATGTGCGAACCAACCT 57.510 45.000 0.00 0.00 0.00 3.50
362 363 4.893424 ATAATGTATGTGCGAACCAACC 57.107 40.909 0.00 0.00 0.00 3.77
363 364 7.575332 AAAAATAATGTATGTGCGAACCAAC 57.425 32.000 0.00 0.00 0.00 3.77
384 385 5.950758 TGGCTAATCGCTACAAAGAAAAA 57.049 34.783 0.00 0.00 39.13 1.94
385 386 5.950758 TTGGCTAATCGCTACAAAGAAAA 57.049 34.783 0.00 0.00 39.13 2.29
386 387 5.950758 TTTGGCTAATCGCTACAAAGAAA 57.049 34.783 0.00 0.00 39.13 2.52
387 388 7.618502 TTATTTGGCTAATCGCTACAAAGAA 57.381 32.000 0.00 0.00 34.68 2.52
388 389 7.414762 GGTTTATTTGGCTAATCGCTACAAAGA 60.415 37.037 0.00 0.00 34.68 2.52
389 390 6.691388 GGTTTATTTGGCTAATCGCTACAAAG 59.309 38.462 0.00 0.00 34.68 2.77
390 391 6.557110 GGTTTATTTGGCTAATCGCTACAAA 58.443 36.000 0.00 0.00 39.13 2.83
391 392 5.220700 CGGTTTATTTGGCTAATCGCTACAA 60.221 40.000 0.00 0.00 39.13 2.41
392 393 4.271533 CGGTTTATTTGGCTAATCGCTACA 59.728 41.667 0.00 0.00 39.13 2.74
393 394 4.271776 ACGGTTTATTTGGCTAATCGCTAC 59.728 41.667 0.00 0.00 39.13 3.58
394 395 4.444536 ACGGTTTATTTGGCTAATCGCTA 58.555 39.130 0.00 0.00 39.13 4.26
395 396 3.275999 ACGGTTTATTTGGCTAATCGCT 58.724 40.909 0.00 0.00 39.13 4.93
396 397 3.311596 AGACGGTTTATTTGGCTAATCGC 59.688 43.478 0.00 0.00 38.13 4.58
397 398 5.479716 AAGACGGTTTATTTGGCTAATCG 57.520 39.130 0.00 0.00 0.00 3.34
398 399 6.530181 CCAAAAGACGGTTTATTTGGCTAATC 59.470 38.462 15.53 0.00 43.60 1.75
399 400 6.394809 CCAAAAGACGGTTTATTTGGCTAAT 58.605 36.000 15.53 0.00 43.60 1.73
400 401 5.774630 CCAAAAGACGGTTTATTTGGCTAA 58.225 37.500 15.53 0.00 43.60 3.09
401 402 5.379732 CCAAAAGACGGTTTATTTGGCTA 57.620 39.130 15.53 0.00 43.60 3.93
402 403 4.251543 CCAAAAGACGGTTTATTTGGCT 57.748 40.909 15.53 0.00 43.60 4.75
405 406 4.147479 GCGAACCAAAAGACGGTTTATTTG 59.853 41.667 0.00 7.05 46.80 2.32
406 407 4.202030 TGCGAACCAAAAGACGGTTTATTT 60.202 37.500 0.00 0.00 46.80 1.40
407 408 3.315749 TGCGAACCAAAAGACGGTTTATT 59.684 39.130 0.00 0.00 46.80 1.40
408 409 2.879646 TGCGAACCAAAAGACGGTTTAT 59.120 40.909 0.00 0.00 46.80 1.40
409 410 2.031930 GTGCGAACCAAAAGACGGTTTA 59.968 45.455 0.00 0.00 46.80 2.01
410 411 1.096416 TGCGAACCAAAAGACGGTTT 58.904 45.000 0.00 0.00 46.80 3.27
412 413 0.745128 TGTGCGAACCAAAAGACGGT 60.745 50.000 0.00 0.00 38.85 4.83
413 414 0.591170 ATGTGCGAACCAAAAGACGG 59.409 50.000 0.00 0.00 0.00 4.79
414 415 1.399727 GGATGTGCGAACCAAAAGACG 60.400 52.381 0.00 0.00 0.00 4.18
415 416 1.606668 TGGATGTGCGAACCAAAAGAC 59.393 47.619 0.00 0.00 0.00 3.01
416 417 1.974265 TGGATGTGCGAACCAAAAGA 58.026 45.000 0.00 0.00 0.00 2.52
417 418 3.302365 AATGGATGTGCGAACCAAAAG 57.698 42.857 0.00 0.00 37.24 2.27
418 419 3.742433 AAATGGATGTGCGAACCAAAA 57.258 38.095 0.00 0.00 37.24 2.44
419 420 3.742433 AAAATGGATGTGCGAACCAAA 57.258 38.095 0.00 0.00 37.24 3.28
420 421 3.742433 AAAAATGGATGTGCGAACCAA 57.258 38.095 0.00 0.00 37.24 3.67
437 438 3.574614 GCTAATCGCTGCAAAGGAAAAA 58.425 40.909 0.00 0.00 35.14 1.94
438 439 2.094752 GGCTAATCGCTGCAAAGGAAAA 60.095 45.455 0.00 0.00 39.13 2.29
439 440 1.472480 GGCTAATCGCTGCAAAGGAAA 59.528 47.619 0.00 0.00 39.13 3.13
440 441 1.094785 GGCTAATCGCTGCAAAGGAA 58.905 50.000 0.00 0.00 39.13 3.36
441 442 0.035534 TGGCTAATCGCTGCAAAGGA 60.036 50.000 0.00 0.00 39.13 3.36
442 443 0.810648 TTGGCTAATCGCTGCAAAGG 59.189 50.000 0.00 0.00 39.13 3.11
443 444 2.634982 TTTGGCTAATCGCTGCAAAG 57.365 45.000 0.00 0.00 39.13 2.77
444 445 4.710423 TTATTTGGCTAATCGCTGCAAA 57.290 36.364 0.00 0.00 39.13 3.68
445 446 4.420168 GTTTATTTGGCTAATCGCTGCAA 58.580 39.130 0.00 0.00 39.13 4.08
446 447 3.181491 GGTTTATTTGGCTAATCGCTGCA 60.181 43.478 0.00 0.00 39.13 4.41
447 448 3.181491 TGGTTTATTTGGCTAATCGCTGC 60.181 43.478 0.00 0.00 39.13 5.25
448 449 4.630894 TGGTTTATTTGGCTAATCGCTG 57.369 40.909 0.00 0.00 39.13 5.18
449 450 5.133221 AGATGGTTTATTTGGCTAATCGCT 58.867 37.500 0.00 0.00 39.13 4.93
450 451 5.438761 AGATGGTTTATTTGGCTAATCGC 57.561 39.130 0.00 0.00 38.13 4.58
451 452 7.222611 CCAAAAGATGGTTTATTTGGCTAATCG 59.777 37.037 0.00 0.00 43.60 3.34
452 453 8.424274 CCAAAAGATGGTTTATTTGGCTAATC 57.576 34.615 0.00 0.00 43.60 1.75
461 462 8.744680 CGTACTCGACCCAAAAGATGGTTTATT 61.745 40.741 0.00 0.00 42.95 1.40
462 463 7.343068 CGTACTCGACCCAAAAGATGGTTTAT 61.343 42.308 0.00 0.00 42.95 1.40
463 464 6.079250 CGTACTCGACCCAAAAGATGGTTTA 61.079 44.000 0.00 0.00 42.95 2.01
464 465 5.331789 CGTACTCGACCCAAAAGATGGTTT 61.332 45.833 0.00 0.00 42.95 3.27
465 466 3.863400 CGTACTCGACCCAAAAGATGGTT 60.863 47.826 0.00 0.00 42.95 3.67
466 467 2.353406 CGTACTCGACCCAAAAGATGGT 60.353 50.000 0.00 0.00 42.95 3.55
467 468 2.268298 CGTACTCGACCCAAAAGATGG 58.732 52.381 0.00 0.00 43.62 3.51
468 469 2.666508 CACGTACTCGACCCAAAAGATG 59.333 50.000 0.00 0.00 40.62 2.90
469 470 2.298163 ACACGTACTCGACCCAAAAGAT 59.702 45.455 0.00 0.00 40.62 2.40
470 471 1.682854 ACACGTACTCGACCCAAAAGA 59.317 47.619 0.00 0.00 40.62 2.52
471 472 2.144482 ACACGTACTCGACCCAAAAG 57.856 50.000 0.00 0.00 40.62 2.27
472 473 2.203401 CAACACGTACTCGACCCAAAA 58.797 47.619 0.00 0.00 40.62 2.44
473 474 1.136695 ACAACACGTACTCGACCCAAA 59.863 47.619 0.00 0.00 40.62 3.28
474 475 0.746063 ACAACACGTACTCGACCCAA 59.254 50.000 0.00 0.00 40.62 4.12
475 476 0.031043 CACAACACGTACTCGACCCA 59.969 55.000 0.00 0.00 40.62 4.51
476 477 0.031178 ACACAACACGTACTCGACCC 59.969 55.000 0.00 0.00 40.62 4.46
477 478 1.126079 CACACAACACGTACTCGACC 58.874 55.000 0.00 0.00 40.62 4.79
478 479 1.777461 GTCACACAACACGTACTCGAC 59.223 52.381 0.00 0.00 40.62 4.20
479 480 1.672363 AGTCACACAACACGTACTCGA 59.328 47.619 0.00 0.00 40.62 4.04
480 481 2.115348 AGTCACACAACACGTACTCG 57.885 50.000 0.00 0.00 43.34 4.18
481 482 2.969306 CGTAGTCACACAACACGTACTC 59.031 50.000 0.00 0.00 0.00 2.59
482 483 2.855953 GCGTAGTCACACAACACGTACT 60.856 50.000 0.00 0.00 35.17 2.73
483 484 1.449418 GCGTAGTCACACAACACGTAC 59.551 52.381 0.00 0.00 35.17 3.67
484 485 1.065251 TGCGTAGTCACACAACACGTA 59.935 47.619 0.00 0.00 35.17 3.57
485 486 0.179132 TGCGTAGTCACACAACACGT 60.179 50.000 0.00 0.00 35.17 4.49
486 487 0.502695 CTGCGTAGTCACACAACACG 59.497 55.000 0.00 0.00 35.78 4.49
487 488 0.232303 GCTGCGTAGTCACACAACAC 59.768 55.000 1.53 0.00 0.00 3.32
488 489 1.212455 CGCTGCGTAGTCACACAACA 61.212 55.000 14.93 0.00 0.00 3.33
489 490 0.937699 TCGCTGCGTAGTCACACAAC 60.938 55.000 22.48 0.00 0.00 3.32
490 491 0.663269 CTCGCTGCGTAGTCACACAA 60.663 55.000 22.48 0.00 0.00 3.33
491 492 1.081442 CTCGCTGCGTAGTCACACA 60.081 57.895 22.48 0.00 0.00 3.72
492 493 0.386858 TTCTCGCTGCGTAGTCACAC 60.387 55.000 22.48 0.00 0.00 3.82
493 494 0.386858 GTTCTCGCTGCGTAGTCACA 60.387 55.000 22.48 0.00 0.00 3.58
494 495 1.071567 GGTTCTCGCTGCGTAGTCAC 61.072 60.000 22.48 16.19 0.00 3.67
495 496 1.211969 GGTTCTCGCTGCGTAGTCA 59.788 57.895 22.48 0.51 0.00 3.41
496 497 0.388134 TTGGTTCTCGCTGCGTAGTC 60.388 55.000 22.48 11.02 0.00 2.59
497 498 0.032952 TTTGGTTCTCGCTGCGTAGT 59.967 50.000 22.48 0.00 0.00 2.73
498 499 0.438830 GTTTGGTTCTCGCTGCGTAG 59.561 55.000 22.48 16.96 0.00 3.51
499 500 0.249531 TGTTTGGTTCTCGCTGCGTA 60.250 50.000 22.48 8.84 0.00 4.42
500 501 1.522806 TGTTTGGTTCTCGCTGCGT 60.523 52.632 22.48 0.00 0.00 5.24
501 502 1.082756 GTGTTTGGTTCTCGCTGCG 60.083 57.895 17.25 17.25 0.00 5.18
502 503 1.166531 AGGTGTTTGGTTCTCGCTGC 61.167 55.000 0.00 0.00 0.00 5.25
503 504 0.868406 GAGGTGTTTGGTTCTCGCTG 59.132 55.000 0.00 0.00 0.00 5.18
504 505 0.468226 TGAGGTGTTTGGTTCTCGCT 59.532 50.000 0.00 0.00 0.00 4.93
505 506 1.305201 TTGAGGTGTTTGGTTCTCGC 58.695 50.000 0.00 0.00 0.00 5.03
506 507 3.815401 AGAATTGAGGTGTTTGGTTCTCG 59.185 43.478 0.00 0.00 0.00 4.04
507 508 5.774498 AAGAATTGAGGTGTTTGGTTCTC 57.226 39.130 0.00 0.00 0.00 2.87
508 509 6.486993 GTCTAAGAATTGAGGTGTTTGGTTCT 59.513 38.462 0.00 0.00 0.00 3.01
509 510 6.294010 GGTCTAAGAATTGAGGTGTTTGGTTC 60.294 42.308 0.00 0.00 0.00 3.62
510 511 5.535030 GGTCTAAGAATTGAGGTGTTTGGTT 59.465 40.000 0.00 0.00 0.00 3.67
511 512 5.070685 GGTCTAAGAATTGAGGTGTTTGGT 58.929 41.667 0.00 0.00 0.00 3.67
512 513 4.459337 GGGTCTAAGAATTGAGGTGTTTGG 59.541 45.833 0.00 0.00 0.00 3.28
513 514 4.459337 GGGGTCTAAGAATTGAGGTGTTTG 59.541 45.833 0.00 0.00 0.00 2.93
514 515 4.508584 GGGGGTCTAAGAATTGAGGTGTTT 60.509 45.833 0.00 0.00 0.00 2.83
515 516 3.010250 GGGGGTCTAAGAATTGAGGTGTT 59.990 47.826 0.00 0.00 0.00 3.32
516 517 2.576648 GGGGGTCTAAGAATTGAGGTGT 59.423 50.000 0.00 0.00 0.00 4.16
517 518 2.846827 AGGGGGTCTAAGAATTGAGGTG 59.153 50.000 0.00 0.00 0.00 4.00
518 519 3.116174 GAGGGGGTCTAAGAATTGAGGT 58.884 50.000 0.00 0.00 0.00 3.85
519 520 3.115390 TGAGGGGGTCTAAGAATTGAGG 58.885 50.000 0.00 0.00 0.00 3.86
520 521 4.844349 TTGAGGGGGTCTAAGAATTGAG 57.156 45.455 0.00 0.00 0.00 3.02
521 522 5.592587 TTTTGAGGGGGTCTAAGAATTGA 57.407 39.130 0.00 0.00 0.00 2.57
560 561 6.353323 TCTTGGAGATTGTTGTACAAGACAA 58.647 36.000 8.98 11.95 46.03 3.18
561 562 5.924356 TCTTGGAGATTGTTGTACAAGACA 58.076 37.500 8.98 1.91 41.94 3.41
562 563 6.861065 TTCTTGGAGATTGTTGTACAAGAC 57.139 37.500 8.98 0.00 41.94 3.01
563 564 7.466725 CGTTTTCTTGGAGATTGTTGTACAAGA 60.467 37.037 8.98 4.62 41.94 3.02
564 565 6.632834 CGTTTTCTTGGAGATTGTTGTACAAG 59.367 38.462 8.98 0.00 41.94 3.16
565 566 6.094325 ACGTTTTCTTGGAGATTGTTGTACAA 59.906 34.615 3.59 3.59 42.95 2.41
566 567 5.587043 ACGTTTTCTTGGAGATTGTTGTACA 59.413 36.000 0.00 0.00 0.00 2.90
567 568 6.018180 AGACGTTTTCTTGGAGATTGTTGTAC 60.018 38.462 0.00 0.00 0.00 2.90
568 569 6.053005 AGACGTTTTCTTGGAGATTGTTGTA 58.947 36.000 0.00 0.00 0.00 2.41
569 570 4.881850 AGACGTTTTCTTGGAGATTGTTGT 59.118 37.500 0.00 0.00 0.00 3.32
570 571 5.424121 AGACGTTTTCTTGGAGATTGTTG 57.576 39.130 0.00 0.00 0.00 3.33
589 590 9.127693 GGATTCTTTCCCCTTGTTGTACAAGAC 62.128 44.444 18.45 0.00 46.72 3.01
590 591 7.194994 GGATTCTTTCCCCTTGTTGTACAAGA 61.195 42.308 18.45 4.62 46.72 3.02
591 592 5.048013 GGATTCTTTCCCCTTGTTGTACAAG 60.048 44.000 8.98 11.62 43.74 3.16
592 593 4.830600 GGATTCTTTCCCCTTGTTGTACAA 59.169 41.667 3.59 3.59 38.75 2.41
593 594 4.105697 AGGATTCTTTCCCCTTGTTGTACA 59.894 41.667 0.00 0.00 46.81 2.90
594 595 4.663334 AGGATTCTTTCCCCTTGTTGTAC 58.337 43.478 0.00 0.00 46.81 2.90
595 596 5.333566 AAGGATTCTTTCCCCTTGTTGTA 57.666 39.130 0.00 0.00 46.81 2.41
596 597 3.903530 AGGATTCTTTCCCCTTGTTGT 57.096 42.857 0.00 0.00 46.81 3.32
601 602 3.923273 AACCAAGGATTCTTTCCCCTT 57.077 42.857 0.00 0.00 46.81 3.95
602 603 4.606255 TCTTAACCAAGGATTCTTTCCCCT 59.394 41.667 0.00 0.00 46.81 4.79
603 604 4.930696 TCTTAACCAAGGATTCTTTCCCC 58.069 43.478 0.00 0.00 46.81 4.81
604 605 4.950475 CCTCTTAACCAAGGATTCTTTCCC 59.050 45.833 0.00 0.00 46.81 3.97
605 606 5.816682 TCCTCTTAACCAAGGATTCTTTCC 58.183 41.667 0.00 0.00 45.85 3.13
606 607 6.943146 ACTTCCTCTTAACCAAGGATTCTTTC 59.057 38.462 0.00 0.00 41.26 2.62
607 608 6.853490 ACTTCCTCTTAACCAAGGATTCTTT 58.147 36.000 0.00 0.00 41.26 2.52
608 609 6.455690 ACTTCCTCTTAACCAAGGATTCTT 57.544 37.500 0.00 0.00 41.26 2.52
609 610 6.960542 TCTACTTCCTCTTAACCAAGGATTCT 59.039 38.462 0.00 0.00 41.26 2.40
610 611 7.184067 TCTACTTCCTCTTAACCAAGGATTC 57.816 40.000 0.00 0.00 41.26 2.52
611 612 7.237887 AGTTCTACTTCCTCTTAACCAAGGATT 59.762 37.037 0.00 0.00 41.26 3.01
612 613 6.731448 AGTTCTACTTCCTCTTAACCAAGGAT 59.269 38.462 0.00 0.00 41.26 3.24
613 614 6.082707 AGTTCTACTTCCTCTTAACCAAGGA 58.917 40.000 0.00 0.00 39.94 3.36
614 615 6.361768 AGTTCTACTTCCTCTTAACCAAGG 57.638 41.667 0.00 0.00 32.22 3.61
615 616 8.678593 AAAAGTTCTACTTCCTCTTAACCAAG 57.321 34.615 0.00 0.00 37.47 3.61
616 617 7.718314 GGAAAAGTTCTACTTCCTCTTAACCAA 59.282 37.037 0.00 0.00 37.47 3.67
617 618 7.072076 AGGAAAAGTTCTACTTCCTCTTAACCA 59.928 37.037 1.37 0.00 44.58 3.67
618 619 7.451732 AGGAAAAGTTCTACTTCCTCTTAACC 58.548 38.462 1.37 0.00 44.58 2.85
619 620 8.905660 AAGGAAAAGTTCTACTTCCTCTTAAC 57.094 34.615 6.97 0.00 46.60 2.01
620 621 9.916360 AAAAGGAAAAGTTCTACTTCCTCTTAA 57.084 29.630 6.97 0.00 46.60 1.85
621 622 9.916360 AAAAAGGAAAAGTTCTACTTCCTCTTA 57.084 29.630 6.97 0.00 46.60 2.10
622 623 8.824756 AAAAAGGAAAAGTTCTACTTCCTCTT 57.175 30.769 6.97 0.00 46.60 2.85
623 624 9.916360 TTAAAAAGGAAAAGTTCTACTTCCTCT 57.084 29.630 6.97 0.00 46.60 3.69
640 641 9.699703 CGAAACCAAGGATTATTTTAAAAAGGA 57.300 29.630 4.44 0.00 0.00 3.36
641 642 8.440059 GCGAAACCAAGGATTATTTTAAAAAGG 58.560 33.333 4.44 0.76 0.00 3.11
642 643 8.440059 GGCGAAACCAAGGATTATTTTAAAAAG 58.560 33.333 4.44 0.00 38.86 2.27
643 644 8.312896 GGCGAAACCAAGGATTATTTTAAAAA 57.687 30.769 4.44 0.00 38.86 1.94
644 645 7.892778 GGCGAAACCAAGGATTATTTTAAAA 57.107 32.000 2.51 2.51 38.86 1.52
660 661 1.728490 GATGGGATGCTGGCGAAACC 61.728 60.000 0.00 0.00 39.84 3.27
690 691 8.008513 TGCAACCCAAAACTGTTTAGTATTTA 57.991 30.769 6.16 0.00 35.69 1.40
693 694 6.664428 ATGCAACCCAAAACTGTTTAGTAT 57.336 33.333 6.16 0.00 35.69 2.12
763 776 1.801025 GCTGTCCGAGAGCTAGCTTTC 60.801 57.143 22.26 22.26 33.37 2.62
770 783 1.407258 GTATTCTGCTGTCCGAGAGCT 59.593 52.381 17.65 1.11 37.35 4.09
771 784 1.537135 GGTATTCTGCTGTCCGAGAGC 60.537 57.143 10.57 10.57 36.95 4.09
772 785 2.028130 AGGTATTCTGCTGTCCGAGAG 58.972 52.381 0.00 0.00 0.00 3.20
773 786 2.145397 AGGTATTCTGCTGTCCGAGA 57.855 50.000 0.00 0.00 0.00 4.04
891 914 1.830279 AGCTAGCTACGGTGTGTGTA 58.170 50.000 17.69 0.00 0.00 2.90
892 915 1.830279 TAGCTAGCTACGGTGTGTGT 58.170 50.000 20.67 0.00 0.00 3.72
893 916 2.933495 TTAGCTAGCTACGGTGTGTG 57.067 50.000 24.09 0.00 0.00 3.82
894 917 2.361438 GGATTAGCTAGCTACGGTGTGT 59.639 50.000 24.09 4.66 0.00 3.72
897 920 1.607628 ACGGATTAGCTAGCTACGGTG 59.392 52.381 27.07 19.03 0.00 4.94
923 946 4.134563 TCGAAGAGGCTAATTAATTGGGC 58.865 43.478 24.85 24.85 42.76 5.36
952 975 1.600638 GTAAAGGGGGTGGAGACGG 59.399 63.158 0.00 0.00 0.00 4.79
953 976 1.217244 CGTAAAGGGGGTGGAGACG 59.783 63.158 0.00 0.00 0.00 4.18
954 977 1.138464 GATCGTAAAGGGGGTGGAGAC 59.862 57.143 0.00 0.00 0.00 3.36
1107 1139 1.376812 GGTGAATCTCGGCCCGTTT 60.377 57.895 1.63 0.00 0.00 3.60
1218 1277 1.224592 GATCACCGGTTGGGCTGAT 59.775 57.895 2.97 2.88 40.62 2.90
1960 2103 3.000925 CGAGCGCGTAGGAAATAATTTGT 59.999 43.478 8.43 0.00 0.00 2.83
2087 2240 0.899720 CAAAAGGGGACAGCATGCAT 59.100 50.000 21.98 7.42 42.53 3.96
2140 2296 5.417580 TGACTTCCAAATTGCCATACTTACC 59.582 40.000 0.00 0.00 0.00 2.85
2148 2304 2.971330 ACCATTGACTTCCAAATTGCCA 59.029 40.909 0.00 0.00 38.43 4.92
2163 2319 6.747280 CGCTGGAAGTAAAATTTAGACCATTG 59.253 38.462 0.00 0.00 35.30 2.82
2166 2322 4.155280 GCGCTGGAAGTAAAATTTAGACCA 59.845 41.667 0.00 0.00 35.30 4.02
2182 2338 2.016318 CATGATAAACTTGGCGCTGGA 58.984 47.619 7.64 0.00 0.00 3.86
2183 2339 1.745087 ACATGATAAACTTGGCGCTGG 59.255 47.619 7.64 0.00 0.00 4.85
2500 2656 3.759086 TCAATATGTTGTGCCGGCTTAAA 59.241 39.130 29.70 16.18 36.69 1.52
2501 2657 3.348119 TCAATATGTTGTGCCGGCTTAA 58.652 40.909 29.70 19.41 36.69 1.85
2503 2659 1.832883 TCAATATGTTGTGCCGGCTT 58.167 45.000 29.70 7.86 36.69 4.35
2518 2674 6.695278 CGTGTGGTAACTTTGTCAATTTCAAT 59.305 34.615 0.00 0.00 37.61 2.57
2523 2875 3.243267 GGCGTGTGGTAACTTTGTCAATT 60.243 43.478 0.00 0.00 37.61 2.32
2530 2882 2.047002 ACAAGGCGTGTGGTAACTTT 57.953 45.000 4.97 0.00 39.72 2.66
2573 2925 2.455674 TCCGGCGATATTCATTCAGG 57.544 50.000 9.30 0.00 0.00 3.86
2620 2972 7.458397 TGGTTAGATTTCTTGTGTTGGAGTAT 58.542 34.615 0.00 0.00 0.00 2.12
2690 3060 3.314080 TGGAGGACATTGTTTGACGAAAC 59.686 43.478 0.00 0.00 41.72 2.78


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.