Multiple sequence alignment - TraesCS5D01G483500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G483500 chr5D 100.000 3563 0 0 1 3563 520243243 520239681 0.000000e+00 6580.0
1 TraesCS5D01G483500 chr5D 87.701 748 83 3 1323 2061 520258668 520257921 0.000000e+00 863.0
2 TraesCS5D01G483500 chr5D 81.639 610 76 20 909 1492 520258990 520258391 1.160000e-129 473.0
3 TraesCS5D01G483500 chr5D 80.066 301 54 6 1195 1492 520241941 520241644 5.990000e-53 219.0
4 TraesCS5D01G483500 chr5D 80.066 301 54 6 1303 1600 520242049 520241752 5.990000e-53 219.0
5 TraesCS5D01G483500 chr5D 89.796 98 10 0 1274 1371 520258360 520258263 3.730000e-25 126.0
6 TraesCS5D01G483500 chr5D 85.714 105 15 0 1627 1731 520258613 520258509 1.050000e-20 111.0
7 TraesCS5D01G483500 chr5B 84.072 1218 122 35 1431 2632 655449377 655448216 0.000000e+00 1109.0
8 TraesCS5D01G483500 chr5B 88.112 572 58 5 1487 2049 655484056 655483486 0.000000e+00 671.0
9 TraesCS5D01G483500 chr5B 89.677 465 42 4 1 459 655450611 655450147 3.960000e-164 588.0
10 TraesCS5D01G483500 chr5B 85.806 465 42 14 938 1383 655489865 655489406 4.160000e-129 472.0
11 TraesCS5D01G483500 chr5B 89.218 371 36 4 997 1365 655449595 655449227 9.010000e-126 460.0
12 TraesCS5D01G483500 chr5B 79.532 171 33 2 1323 1492 655449377 655449208 1.740000e-23 121.0
13 TraesCS5D01G483500 chr5B 91.111 90 7 1 639 727 655450156 655450067 1.740000e-23 121.0
14 TraesCS5D01G483500 chr5B 92.857 56 4 0 3096 3151 655447370 655447315 8.200000e-12 82.4
15 TraesCS5D01G483500 chr5B 100.000 36 0 0 1215 1250 655449269 655449234 2.300000e-07 67.6
16 TraesCS5D01G483500 chr5A 87.049 749 86 6 1323 2061 647579275 647578528 0.000000e+00 835.0
17 TraesCS5D01G483500 chr5A 88.462 546 30 13 2700 3232 647533776 647533251 2.330000e-176 628.0
18 TraesCS5D01G483500 chr5A 84.452 611 66 12 909 1492 647579606 647578998 3.080000e-160 575.0
19 TraesCS5D01G483500 chr5A 88.174 482 42 5 2112 2593 647534579 647534113 8.640000e-156 560.0
20 TraesCS5D01G483500 chr5A 90.799 413 38 0 1697 2109 647534961 647534549 1.450000e-153 553.0
21 TraesCS5D01G483500 chr5A 89.737 419 26 6 3046 3461 647520782 647520378 1.470000e-143 520.0
22 TraesCS5D01G483500 chr5A 81.720 186 30 3 1627 1810 647579112 647578929 6.160000e-33 152.0
23 TraesCS5D01G483500 chr5A 92.391 92 7 0 3464 3555 647532913 647532822 8.030000e-27 132.0
24 TraesCS5D01G483500 chr5A 93.506 77 5 0 3485 3561 647519977 647519901 8.080000e-22 115.0
25 TraesCS5D01G483500 chr4D 91.489 94 7 1 3470 3563 413047686 413047594 1.040000e-25 128.0
26 TraesCS5D01G483500 chr4D 87.097 93 12 0 3469 3561 478022980 478023072 4.860000e-19 106.0
27 TraesCS5D01G483500 chr7A 90.000 90 9 0 3467 3556 68780935 68780846 2.250000e-22 117.0
28 TraesCS5D01G483500 chr7A 88.506 87 10 0 3464 3550 557884700 557884786 4.860000e-19 106.0
29 TraesCS5D01G483500 chr7A 84.694 98 13 2 3464 3560 151870815 151870719 2.930000e-16 97.1
30 TraesCS5D01G483500 chr6A 83.636 110 15 3 511 619 93524184 93524291 2.260000e-17 100.0
31 TraesCS5D01G483500 chr4A 85.106 94 14 0 3464 3557 561073198 561073291 2.930000e-16 97.1
32 TraesCS5D01G483500 chr7D 83.158 95 16 0 3467 3561 151782141 151782235 1.760000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G483500 chr5D 520239681 520243243 3562 True 2339.333333 6580 86.710667 1 3563 3 chr5D.!!$R1 3562
1 TraesCS5D01G483500 chr5D 520257921 520258990 1069 True 393.250000 863 86.212500 909 2061 4 chr5D.!!$R2 1152
2 TraesCS5D01G483500 chr5B 655483486 655484056 570 True 671.000000 671 88.112000 1487 2049 1 chr5B.!!$R1 562
3 TraesCS5D01G483500 chr5B 655447315 655450611 3296 True 364.142857 1109 89.495286 1 3151 7 chr5B.!!$R3 3150
4 TraesCS5D01G483500 chr5A 647578528 647579606 1078 True 520.666667 835 84.407000 909 2061 3 chr5A.!!$R3 1152
5 TraesCS5D01G483500 chr5A 647532822 647534961 2139 True 468.250000 628 89.956500 1697 3555 4 chr5A.!!$R2 1858
6 TraesCS5D01G483500 chr5A 647519901 647520782 881 True 317.500000 520 91.621500 3046 3561 2 chr5A.!!$R1 515

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
950 1297 0.177604 GATCAGCCACTCCACTCCAG 59.822 60.0 0.0 0.0 0.0 3.86 F
1549 1917 0.242825 TCTAGTGGTGCCGTTCGAAG 59.757 55.0 0.0 0.0 0.0 3.79 F
1623 1991 0.471617 GTCTGGGGCAGCTCATACAT 59.528 55.0 0.0 0.0 0.0 2.29 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2136 2513 0.390340 TGCAGATGACCAAGACGAGC 60.390 55.0 0.0 0.0 0.00 5.03 R
2469 2846 0.448593 CTTCCTCAGGAGTCGTCGAC 59.551 60.0 17.7 17.7 31.21 4.20 R
2930 3785 0.475906 AGCCAAGCAGGTCTCAAAGT 59.524 50.0 0.0 0.0 40.61 2.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 1.950828 CAAGCGGCAGAGATCTCAAT 58.049 50.000 24.39 1.76 0.00 2.57
38 39 1.865970 CAAGCGGCAGAGATCTCAATC 59.134 52.381 24.39 12.05 0.00 2.67
39 40 1.117994 AGCGGCAGAGATCTCAATCA 58.882 50.000 24.39 0.00 34.07 2.57
50 51 7.697710 GCAGAGATCTCAATCATACTATTCGAG 59.302 40.741 24.39 0.00 34.07 4.04
77 78 9.607988 CATGGTTAATAGTATAGACAACAACCA 57.392 33.333 14.35 14.35 44.88 3.67
87 88 8.705594 AGTATAGACAACAACCAGCTATACAAT 58.294 33.333 16.20 0.15 42.89 2.71
96 97 2.032054 CCAGCTATACAATGTTGCCACG 59.968 50.000 0.00 0.00 0.00 4.94
97 98 2.677836 CAGCTATACAATGTTGCCACGT 59.322 45.455 0.00 0.00 0.00 4.49
109 110 5.585820 TGTTGCCACGTTATCTATAGTCA 57.414 39.130 0.00 0.00 0.00 3.41
146 147 7.818997 ACATGTATAGTAGCTACAGTTGCTA 57.181 36.000 25.28 12.14 41.46 3.49
203 206 8.322906 TCTTACACTATCACAATGTTTCTTGG 57.677 34.615 0.00 0.00 0.00 3.61
208 211 3.593442 TCACAATGTTTCTTGGGTCCT 57.407 42.857 0.00 0.00 31.29 3.85
217 220 1.048601 TCTTGGGTCCTGTGACTGTC 58.951 55.000 0.00 0.00 41.47 3.51
219 222 1.140852 CTTGGGTCCTGTGACTGTCAA 59.859 52.381 12.81 2.56 41.47 3.18
243 246 0.456995 CAGTCGTCTTCCCTTCTCGC 60.457 60.000 0.00 0.00 0.00 5.03
244 247 0.609681 AGTCGTCTTCCCTTCTCGCT 60.610 55.000 0.00 0.00 0.00 4.93
314 319 7.394359 TCCTTACATTATGCTTTGCTCTTCTTT 59.606 33.333 0.00 0.00 0.00 2.52
339 344 5.163713 TGCAAGGCAAAACATAAACCAAAAC 60.164 36.000 0.00 0.00 34.76 2.43
344 349 5.467399 GGCAAAACATAAACCAAAACCTACC 59.533 40.000 0.00 0.00 0.00 3.18
345 350 6.049790 GCAAAACATAAACCAAAACCTACCA 58.950 36.000 0.00 0.00 0.00 3.25
347 352 6.793505 AAACATAAACCAAAACCTACCACA 57.206 33.333 0.00 0.00 0.00 4.17
348 353 6.987403 AACATAAACCAAAACCTACCACAT 57.013 33.333 0.00 0.00 0.00 3.21
375 380 2.093181 CACCTCCACGTAATCAATCCCA 60.093 50.000 0.00 0.00 0.00 4.37
440 447 6.727697 ACCTAGCCGGTTTATAATATAGGTGT 59.272 38.462 1.90 0.00 46.37 4.16
475 482 9.860650 ATTTATACTATTGGTGTGCTTAATCCA 57.139 29.630 0.00 0.00 0.00 3.41
476 483 9.860650 TTTATACTATTGGTGTGCTTAATCCAT 57.139 29.630 0.00 0.00 0.00 3.41
477 484 7.986085 ATACTATTGGTGTGCTTAATCCATC 57.014 36.000 0.00 0.00 0.00 3.51
478 485 5.133221 ACTATTGGTGTGCTTAATCCATCC 58.867 41.667 0.00 0.00 0.00 3.51
479 486 3.448093 TTGGTGTGCTTAATCCATCCA 57.552 42.857 0.00 0.00 0.00 3.41
480 487 3.668141 TGGTGTGCTTAATCCATCCAT 57.332 42.857 0.00 0.00 0.00 3.41
481 488 3.979911 TGGTGTGCTTAATCCATCCATT 58.020 40.909 0.00 0.00 0.00 3.16
482 489 4.352009 TGGTGTGCTTAATCCATCCATTT 58.648 39.130 0.00 0.00 0.00 2.32
483 490 4.160065 TGGTGTGCTTAATCCATCCATTTG 59.840 41.667 0.00 0.00 0.00 2.32
484 491 4.402155 GGTGTGCTTAATCCATCCATTTGA 59.598 41.667 0.00 0.00 0.00 2.69
485 492 5.105392 GGTGTGCTTAATCCATCCATTTGAA 60.105 40.000 0.00 0.00 0.00 2.69
486 493 6.397272 GTGTGCTTAATCCATCCATTTGAAA 58.603 36.000 0.00 0.00 0.00 2.69
487 494 6.873076 GTGTGCTTAATCCATCCATTTGAAAA 59.127 34.615 0.00 0.00 0.00 2.29
488 495 6.873076 TGTGCTTAATCCATCCATTTGAAAAC 59.127 34.615 0.00 0.00 0.00 2.43
489 496 7.099120 GTGCTTAATCCATCCATTTGAAAACT 58.901 34.615 0.00 0.00 0.00 2.66
490 497 7.063780 GTGCTTAATCCATCCATTTGAAAACTG 59.936 37.037 0.00 0.00 0.00 3.16
491 498 7.099120 GCTTAATCCATCCATTTGAAAACTGT 58.901 34.615 0.00 0.00 0.00 3.55
492 499 7.276438 GCTTAATCCATCCATTTGAAAACTGTC 59.724 37.037 0.00 0.00 0.00 3.51
493 500 4.764679 TCCATCCATTTGAAAACTGTCG 57.235 40.909 0.00 0.00 0.00 4.35
494 501 4.141287 TCCATCCATTTGAAAACTGTCGT 58.859 39.130 0.00 0.00 0.00 4.34
495 502 4.023279 TCCATCCATTTGAAAACTGTCGTG 60.023 41.667 0.00 0.00 0.00 4.35
496 503 3.980646 TCCATTTGAAAACTGTCGTGG 57.019 42.857 0.00 0.00 0.00 4.94
497 504 3.546724 TCCATTTGAAAACTGTCGTGGA 58.453 40.909 0.00 0.00 32.48 4.02
498 505 3.314080 TCCATTTGAAAACTGTCGTGGAC 59.686 43.478 0.00 0.00 30.10 4.02
499 506 3.066064 CCATTTGAAAACTGTCGTGGACA 59.934 43.478 0.00 0.00 40.50 4.02
500 507 4.439426 CCATTTGAAAACTGTCGTGGACAA 60.439 41.667 0.00 0.00 42.26 3.18
501 508 4.768130 TTTGAAAACTGTCGTGGACAAA 57.232 36.364 0.00 0.00 42.26 2.83
502 509 4.768130 TTGAAAACTGTCGTGGACAAAA 57.232 36.364 0.00 0.00 42.26 2.44
503 510 4.349663 TGAAAACTGTCGTGGACAAAAG 57.650 40.909 0.00 0.00 42.26 2.27
504 511 4.004314 TGAAAACTGTCGTGGACAAAAGA 58.996 39.130 0.00 0.00 42.26 2.52
505 512 4.456222 TGAAAACTGTCGTGGACAAAAGAA 59.544 37.500 0.00 0.00 42.26 2.52
506 513 5.048643 TGAAAACTGTCGTGGACAAAAGAAA 60.049 36.000 0.00 0.00 42.26 2.52
507 514 4.616181 AACTGTCGTGGACAAAAGAAAG 57.384 40.909 0.00 0.00 42.26 2.62
508 515 2.943033 ACTGTCGTGGACAAAAGAAAGG 59.057 45.455 0.00 0.00 42.26 3.11
509 516 2.290641 CTGTCGTGGACAAAAGAAAGGG 59.709 50.000 0.00 0.00 42.26 3.95
510 517 2.092861 TGTCGTGGACAAAAGAAAGGGA 60.093 45.455 0.00 0.00 39.78 4.20
511 518 2.946990 GTCGTGGACAAAAGAAAGGGAA 59.053 45.455 0.00 0.00 32.09 3.97
512 519 3.379057 GTCGTGGACAAAAGAAAGGGAAA 59.621 43.478 0.00 0.00 32.09 3.13
513 520 3.630312 TCGTGGACAAAAGAAAGGGAAAG 59.370 43.478 0.00 0.00 0.00 2.62
514 521 3.243401 CGTGGACAAAAGAAAGGGAAAGG 60.243 47.826 0.00 0.00 0.00 3.11
515 522 2.698274 TGGACAAAAGAAAGGGAAAGGC 59.302 45.455 0.00 0.00 0.00 4.35
516 523 2.965831 GGACAAAAGAAAGGGAAAGGCT 59.034 45.455 0.00 0.00 0.00 4.58
517 524 4.149598 GGACAAAAGAAAGGGAAAGGCTA 58.850 43.478 0.00 0.00 0.00 3.93
518 525 4.587262 GGACAAAAGAAAGGGAAAGGCTAA 59.413 41.667 0.00 0.00 0.00 3.09
519 526 5.069914 GGACAAAAGAAAGGGAAAGGCTAAA 59.930 40.000 0.00 0.00 0.00 1.85
520 527 6.161855 ACAAAAGAAAGGGAAAGGCTAAAG 57.838 37.500 0.00 0.00 0.00 1.85
521 528 5.661312 ACAAAAGAAAGGGAAAGGCTAAAGT 59.339 36.000 0.00 0.00 0.00 2.66
522 529 6.156256 ACAAAAGAAAGGGAAAGGCTAAAGTT 59.844 34.615 0.00 0.00 0.00 2.66
523 530 6.406692 AAAGAAAGGGAAAGGCTAAAGTTC 57.593 37.500 0.00 0.00 0.00 3.01
524 531 5.326283 AGAAAGGGAAAGGCTAAAGTTCT 57.674 39.130 0.00 0.00 0.00 3.01
525 532 5.706447 AGAAAGGGAAAGGCTAAAGTTCTT 58.294 37.500 0.00 0.00 0.00 2.52
526 533 6.849151 AGAAAGGGAAAGGCTAAAGTTCTTA 58.151 36.000 0.00 0.00 0.00 2.10
527 534 6.715718 AGAAAGGGAAAGGCTAAAGTTCTTAC 59.284 38.462 0.00 0.00 0.00 2.34
528 535 4.576879 AGGGAAAGGCTAAAGTTCTTACG 58.423 43.478 0.00 0.00 0.00 3.18
529 536 4.041321 AGGGAAAGGCTAAAGTTCTTACGT 59.959 41.667 0.00 0.00 0.00 3.57
530 537 4.391216 GGGAAAGGCTAAAGTTCTTACGTC 59.609 45.833 0.00 0.00 0.00 4.34
531 538 4.992951 GGAAAGGCTAAAGTTCTTACGTCA 59.007 41.667 0.00 0.00 0.00 4.35
532 539 5.120363 GGAAAGGCTAAAGTTCTTACGTCAG 59.880 44.000 0.00 0.00 0.00 3.51
533 540 5.464030 AAGGCTAAAGTTCTTACGTCAGA 57.536 39.130 0.00 0.00 0.00 3.27
534 541 5.662674 AGGCTAAAGTTCTTACGTCAGAT 57.337 39.130 0.00 0.00 0.00 2.90
535 542 6.038997 AGGCTAAAGTTCTTACGTCAGATT 57.961 37.500 0.00 0.00 0.00 2.40
536 543 6.465084 AGGCTAAAGTTCTTACGTCAGATTT 58.535 36.000 0.00 2.32 0.00 2.17
537 544 6.935208 AGGCTAAAGTTCTTACGTCAGATTTT 59.065 34.615 0.00 7.45 0.00 1.82
538 545 7.444487 AGGCTAAAGTTCTTACGTCAGATTTTT 59.556 33.333 12.24 11.80 0.00 1.94
539 546 8.715088 GGCTAAAGTTCTTACGTCAGATTTTTA 58.285 33.333 12.24 12.16 0.00 1.52
540 547 9.742552 GCTAAAGTTCTTACGTCAGATTTTTAG 57.257 33.333 23.12 23.12 35.14 1.85
543 550 8.882415 AAGTTCTTACGTCAGATTTTTAGACA 57.118 30.769 0.00 0.00 32.68 3.41
544 551 9.490379 AAGTTCTTACGTCAGATTTTTAGACAT 57.510 29.630 0.00 0.00 32.68 3.06
545 552 8.926710 AGTTCTTACGTCAGATTTTTAGACATG 58.073 33.333 0.00 0.00 32.68 3.21
546 553 8.922676 GTTCTTACGTCAGATTTTTAGACATGA 58.077 33.333 0.00 0.00 32.68 3.07
547 554 8.462143 TCTTACGTCAGATTTTTAGACATGAC 57.538 34.615 0.00 0.00 34.99 3.06
548 555 8.085909 TCTTACGTCAGATTTTTAGACATGACA 58.914 33.333 0.00 0.00 37.50 3.58
549 556 8.596271 TTACGTCAGATTTTTAGACATGACAA 57.404 30.769 0.00 0.00 37.50 3.18
550 557 7.490962 ACGTCAGATTTTTAGACATGACAAA 57.509 32.000 0.00 0.00 37.50 2.83
551 558 8.099364 ACGTCAGATTTTTAGACATGACAAAT 57.901 30.769 0.00 0.00 37.50 2.32
552 559 8.017373 ACGTCAGATTTTTAGACATGACAAATG 58.983 33.333 0.00 0.00 37.50 2.32
553 560 8.229811 CGTCAGATTTTTAGACATGACAAATGA 58.770 33.333 0.00 0.00 37.50 2.57
554 561 9.897744 GTCAGATTTTTAGACATGACAAATGAA 57.102 29.630 0.00 0.00 37.56 2.57
558 565 9.962759 GATTTTTAGACATGACAAATGAAATGC 57.037 29.630 0.00 0.00 0.00 3.56
559 566 9.715121 ATTTTTAGACATGACAAATGAAATGCT 57.285 25.926 0.00 0.00 0.00 3.79
560 567 9.545105 TTTTTAGACATGACAAATGAAATGCTT 57.455 25.926 0.00 0.00 0.00 3.91
561 568 9.545105 TTTTAGACATGACAAATGAAATGCTTT 57.455 25.926 0.00 0.00 0.00 3.51
562 569 9.545105 TTTAGACATGACAAATGAAATGCTTTT 57.455 25.926 0.00 0.00 0.00 2.27
565 572 9.146984 AGACATGACAAATGAAATGCTTTTATG 57.853 29.630 0.00 0.00 0.00 1.90
566 573 8.259049 ACATGACAAATGAAATGCTTTTATGG 57.741 30.769 0.00 0.00 0.00 2.74
567 574 6.724694 TGACAAATGAAATGCTTTTATGGC 57.275 33.333 0.00 0.00 0.00 4.40
568 575 6.228995 TGACAAATGAAATGCTTTTATGGCA 58.771 32.000 0.00 0.00 44.05 4.92
569 576 6.709397 TGACAAATGAAATGCTTTTATGGCAA 59.291 30.769 0.00 0.00 43.14 4.52
570 577 7.390996 TGACAAATGAAATGCTTTTATGGCAAT 59.609 29.630 0.00 0.00 43.14 3.56
571 578 8.113173 ACAAATGAAATGCTTTTATGGCAATT 57.887 26.923 0.00 0.00 43.14 2.32
572 579 8.578151 ACAAATGAAATGCTTTTATGGCAATTT 58.422 25.926 0.00 0.00 43.14 1.82
588 595 6.560253 GGCAATTTATATTGACGTGAGGAT 57.440 37.500 9.76 0.00 43.12 3.24
589 596 6.373779 GGCAATTTATATTGACGTGAGGATG 58.626 40.000 9.76 0.00 43.12 3.51
590 597 6.204688 GGCAATTTATATTGACGTGAGGATGA 59.795 38.462 9.76 0.00 43.12 2.92
591 598 7.094634 GGCAATTTATATTGACGTGAGGATGAT 60.095 37.037 9.76 0.00 43.12 2.45
592 599 8.935844 GCAATTTATATTGACGTGAGGATGATA 58.064 33.333 9.76 0.00 43.12 2.15
600 607 8.964476 ATTGACGTGAGGATGATAAATTTAGT 57.036 30.769 3.94 0.00 0.00 2.24
601 608 8.786826 TTGACGTGAGGATGATAAATTTAGTT 57.213 30.769 3.94 0.00 0.00 2.24
602 609 8.786826 TGACGTGAGGATGATAAATTTAGTTT 57.213 30.769 3.94 0.00 0.00 2.66
603 610 9.878667 TGACGTGAGGATGATAAATTTAGTTTA 57.121 29.630 3.94 0.00 36.75 2.01
611 618 9.599322 GGATGATAAATTTAGTTTATGAGCACG 57.401 33.333 3.94 0.00 41.82 5.34
621 628 6.619801 AGTTTATGAGCACGATAATTTCCC 57.380 37.500 0.00 0.00 0.00 3.97
622 629 6.357367 AGTTTATGAGCACGATAATTTCCCT 58.643 36.000 0.00 0.00 0.00 4.20
623 630 7.506114 AGTTTATGAGCACGATAATTTCCCTA 58.494 34.615 0.00 0.00 0.00 3.53
624 631 7.657761 AGTTTATGAGCACGATAATTTCCCTAG 59.342 37.037 0.00 0.00 0.00 3.02
625 632 5.552870 ATGAGCACGATAATTTCCCTAGT 57.447 39.130 0.00 0.00 0.00 2.57
626 633 4.693283 TGAGCACGATAATTTCCCTAGTG 58.307 43.478 0.00 0.00 0.00 2.74
627 634 4.404394 TGAGCACGATAATTTCCCTAGTGA 59.596 41.667 0.00 0.00 0.00 3.41
628 635 5.105106 TGAGCACGATAATTTCCCTAGTGAA 60.105 40.000 0.00 0.00 0.00 3.18
629 636 5.116882 AGCACGATAATTTCCCTAGTGAAC 58.883 41.667 0.00 0.00 0.00 3.18
630 637 5.104900 AGCACGATAATTTCCCTAGTGAACT 60.105 40.000 0.00 0.00 0.00 3.01
631 638 5.006746 GCACGATAATTTCCCTAGTGAACTG 59.993 44.000 0.00 0.00 0.00 3.16
632 639 6.338146 CACGATAATTTCCCTAGTGAACTGA 58.662 40.000 0.00 0.00 0.00 3.41
633 640 6.477033 CACGATAATTTCCCTAGTGAACTGAG 59.523 42.308 0.00 0.00 0.00 3.35
634 641 6.380274 ACGATAATTTCCCTAGTGAACTGAGA 59.620 38.462 0.00 0.00 0.00 3.27
635 642 6.697892 CGATAATTTCCCTAGTGAACTGAGAC 59.302 42.308 0.00 0.00 0.00 3.36
636 643 3.936372 TTTCCCTAGTGAACTGAGACG 57.064 47.619 0.00 0.00 0.00 4.18
637 644 1.835494 TCCCTAGTGAACTGAGACGG 58.165 55.000 0.00 0.00 0.00 4.79
638 645 1.353358 TCCCTAGTGAACTGAGACGGA 59.647 52.381 0.00 0.00 0.00 4.69
639 646 2.025226 TCCCTAGTGAACTGAGACGGAT 60.025 50.000 0.00 0.00 0.00 4.18
640 647 2.761208 CCCTAGTGAACTGAGACGGATT 59.239 50.000 0.00 0.00 0.00 3.01
641 648 3.195825 CCCTAGTGAACTGAGACGGATTT 59.804 47.826 0.00 0.00 0.00 2.17
642 649 4.177026 CCTAGTGAACTGAGACGGATTTG 58.823 47.826 0.00 0.00 0.00 2.32
643 650 3.753294 AGTGAACTGAGACGGATTTGT 57.247 42.857 0.00 0.00 0.00 2.83
644 651 3.654414 AGTGAACTGAGACGGATTTGTC 58.346 45.455 0.00 0.00 39.21 3.18
651 658 3.123674 GACGGATTTGTCTGCTCGT 57.876 52.632 0.00 0.00 35.95 4.18
677 684 7.976734 TCAATTAAACTTGGACGAACACAAATT 59.023 29.630 0.00 0.00 0.00 1.82
686 693 5.299531 TGGACGAACACAAATTACCATGAAA 59.700 36.000 0.00 0.00 0.00 2.69
688 695 6.362283 GGACGAACACAAATTACCATGAAAAG 59.638 38.462 0.00 0.00 0.00 2.27
693 700 8.785329 AACACAAATTACCATGAAAAGTGTTT 57.215 26.923 15.57 3.53 42.85 2.83
727 734 3.120649 GCTAAAAATCTGACGTTCGCTGT 60.121 43.478 0.00 0.00 0.00 4.40
729 736 5.389098 GCTAAAAATCTGACGTTCGCTGTAA 60.389 40.000 0.00 0.00 0.00 2.41
730 737 5.607119 AAAAATCTGACGTTCGCTGTAAT 57.393 34.783 0.00 0.00 0.00 1.89
731 738 6.715344 AAAAATCTGACGTTCGCTGTAATA 57.285 33.333 0.00 0.00 0.00 0.98
733 740 5.890110 AATCTGACGTTCGCTGTAATATG 57.110 39.130 0.00 0.00 0.00 1.78
734 741 3.113322 TCTGACGTTCGCTGTAATATGC 58.887 45.455 0.00 0.00 0.00 3.14
735 742 3.116300 CTGACGTTCGCTGTAATATGCT 58.884 45.455 0.00 0.00 0.00 3.79
736 743 3.517602 TGACGTTCGCTGTAATATGCTT 58.482 40.909 0.00 0.00 0.00 3.91
738 745 4.390603 TGACGTTCGCTGTAATATGCTTTT 59.609 37.500 0.00 0.00 0.00 2.27
739 746 4.647964 ACGTTCGCTGTAATATGCTTTTG 58.352 39.130 0.00 0.00 0.00 2.44
740 747 4.028383 CGTTCGCTGTAATATGCTTTTGG 58.972 43.478 0.00 0.00 0.00 3.28
742 749 5.636837 GTTCGCTGTAATATGCTTTTGGAA 58.363 37.500 0.00 0.00 0.00 3.53
743 750 5.229921 TCGCTGTAATATGCTTTTGGAAC 57.770 39.130 0.00 0.00 0.00 3.62
744 751 4.095782 TCGCTGTAATATGCTTTTGGAACC 59.904 41.667 0.00 0.00 0.00 3.62
745 752 4.351192 GCTGTAATATGCTTTTGGAACCG 58.649 43.478 0.00 0.00 0.00 4.44
746 753 4.142469 GCTGTAATATGCTTTTGGAACCGT 60.142 41.667 0.00 0.00 0.00 4.83
747 754 5.621329 GCTGTAATATGCTTTTGGAACCGTT 60.621 40.000 0.00 0.00 0.00 4.44
751 758 0.383949 TGCTTTTGGAACCGTTGAGC 59.616 50.000 0.00 0.00 0.00 4.26
752 759 0.318699 GCTTTTGGAACCGTTGAGCC 60.319 55.000 0.00 0.00 0.00 4.70
755 808 2.285889 TTTGGAACCGTTGAGCCCCA 62.286 55.000 0.00 0.00 0.00 4.96
760 813 0.822121 AACCGTTGAGCCCCAGAAAC 60.822 55.000 0.00 0.00 0.00 2.78
780 833 3.454371 CCAGTATTGGGAAGGTACGAG 57.546 52.381 0.00 0.00 41.05 4.18
781 834 2.483188 CCAGTATTGGGAAGGTACGAGC 60.483 54.545 0.00 0.00 41.05 5.03
782 835 1.761198 AGTATTGGGAAGGTACGAGCC 59.239 52.381 0.00 0.00 0.00 4.70
783 836 1.125633 TATTGGGAAGGTACGAGCCC 58.874 55.000 8.23 8.23 41.08 5.19
785 838 2.288025 TGGGAAGGTACGAGCCCAC 61.288 63.158 12.62 0.00 45.31 4.61
786 839 2.183555 GGAAGGTACGAGCCCACG 59.816 66.667 0.00 0.00 39.31 4.94
787 840 2.345760 GGAAGGTACGAGCCCACGA 61.346 63.158 0.00 0.00 37.03 4.35
788 841 1.153881 GAAGGTACGAGCCCACGAC 60.154 63.158 0.00 0.00 37.03 4.34
789 842 2.862347 GAAGGTACGAGCCCACGACG 62.862 65.000 0.00 0.00 37.03 5.12
790 843 3.741476 GGTACGAGCCCACGACGT 61.741 66.667 0.00 0.00 42.70 4.34
791 844 2.256461 GTACGAGCCCACGACGTT 59.744 61.111 0.00 0.00 40.61 3.99
792 845 2.084681 GTACGAGCCCACGACGTTG 61.085 63.158 0.00 0.00 40.61 4.10
793 846 3.902162 TACGAGCCCACGACGTTGC 62.902 63.158 10.49 10.49 40.61 4.17
811 864 4.170062 CGTCGCTGCTGCCCAATG 62.170 66.667 10.24 0.00 35.36 2.82
812 865 3.818787 GTCGCTGCTGCCCAATGG 61.819 66.667 10.24 0.00 35.36 3.16
826 879 4.290711 CCCAATGGGCATTTTCTTTTCT 57.709 40.909 4.89 0.00 35.35 2.52
827 880 4.654915 CCCAATGGGCATTTTCTTTTCTT 58.345 39.130 4.89 0.00 35.35 2.52
828 881 4.696877 CCCAATGGGCATTTTCTTTTCTTC 59.303 41.667 4.89 0.00 35.35 2.87
829 882 5.513614 CCCAATGGGCATTTTCTTTTCTTCT 60.514 40.000 4.89 0.00 35.35 2.85
830 883 5.999600 CCAATGGGCATTTTCTTTTCTTCTT 59.000 36.000 0.00 0.00 0.00 2.52
831 884 6.487668 CCAATGGGCATTTTCTTTTCTTCTTT 59.512 34.615 0.00 0.00 0.00 2.52
832 885 7.013559 CCAATGGGCATTTTCTTTTCTTCTTTT 59.986 33.333 0.00 0.00 0.00 2.27
833 886 7.734924 ATGGGCATTTTCTTTTCTTCTTTTC 57.265 32.000 0.00 0.00 0.00 2.29
834 887 5.752955 TGGGCATTTTCTTTTCTTCTTTTCG 59.247 36.000 0.00 0.00 0.00 3.46
835 888 5.753438 GGGCATTTTCTTTTCTTCTTTTCGT 59.247 36.000 0.00 0.00 0.00 3.85
836 889 6.292328 GGGCATTTTCTTTTCTTCTTTTCGTG 60.292 38.462 0.00 0.00 0.00 4.35
837 890 6.475402 GGCATTTTCTTTTCTTCTTTTCGTGA 59.525 34.615 0.00 0.00 0.00 4.35
838 891 7.010091 GGCATTTTCTTTTCTTCTTTTCGTGAA 59.990 33.333 0.00 0.00 0.00 3.18
839 892 8.052490 GCATTTTCTTTTCTTCTTTTCGTGAAG 58.948 33.333 0.00 0.00 41.46 3.02
840 893 9.289303 CATTTTCTTTTCTTCTTTTCGTGAAGA 57.711 29.630 2.51 2.51 45.41 2.87
841 894 8.895932 TTTTCTTTTCTTCTTTTCGTGAAGAG 57.104 30.769 6.34 0.00 46.84 2.85
842 895 6.049263 TCTTTTCTTCTTTTCGTGAAGAGC 57.951 37.500 6.34 0.00 46.84 4.09
843 896 5.584649 TCTTTTCTTCTTTTCGTGAAGAGCA 59.415 36.000 6.34 0.00 46.84 4.26
844 897 5.409643 TTTCTTCTTTTCGTGAAGAGCAG 57.590 39.130 6.34 0.00 46.84 4.24
845 898 2.802816 TCTTCTTTTCGTGAAGAGCAGC 59.197 45.455 2.51 0.00 43.19 5.25
846 899 2.533266 TCTTTTCGTGAAGAGCAGCT 57.467 45.000 0.00 0.00 32.19 4.24
847 900 2.138320 TCTTTTCGTGAAGAGCAGCTG 58.862 47.619 10.11 10.11 32.19 4.24
848 901 2.138320 CTTTTCGTGAAGAGCAGCTGA 58.862 47.619 20.43 0.00 0.00 4.26
849 902 2.462456 TTTCGTGAAGAGCAGCTGAT 57.538 45.000 20.43 12.64 0.00 2.90
850 903 1.718396 TTCGTGAAGAGCAGCTGATG 58.282 50.000 20.43 0.13 0.00 3.07
882 935 3.665675 ATGACGAAGCCGCCCTGAC 62.666 63.158 0.00 0.00 39.95 3.51
883 936 4.070552 GACGAAGCCGCCCTGACT 62.071 66.667 0.00 0.00 39.95 3.41
905 958 1.477558 CCCAATGGCCTTCGCTCTAAT 60.478 52.381 3.32 0.00 34.44 1.73
906 959 2.224523 CCCAATGGCCTTCGCTCTAATA 60.225 50.000 3.32 0.00 34.44 0.98
932 1275 2.283173 TCCTCACTCCAGCAGCGA 60.283 61.111 0.00 0.00 0.00 4.93
950 1297 0.177604 GATCAGCCACTCCACTCCAG 59.822 60.000 0.00 0.00 0.00 3.86
952 1299 0.252421 TCAGCCACTCCACTCCAGAT 60.252 55.000 0.00 0.00 0.00 2.90
957 1307 1.135915 CCACTCCACTCCAGATCGAAG 59.864 57.143 0.00 0.00 0.00 3.79
959 1309 1.006043 ACTCCACTCCAGATCGAAGGA 59.994 52.381 0.00 0.00 0.00 3.36
961 1311 2.100584 CTCCACTCCAGATCGAAGGAAG 59.899 54.545 6.16 2.82 32.57 3.46
962 1312 1.472376 CCACTCCAGATCGAAGGAAGC 60.472 57.143 6.16 0.00 32.57 3.86
963 1313 1.480137 CACTCCAGATCGAAGGAAGCT 59.520 52.381 6.16 0.00 32.57 3.74
972 1322 3.469008 TCGAAGGAAGCTTTGTTCTCA 57.531 42.857 15.76 4.21 0.00 3.27
973 1323 4.008074 TCGAAGGAAGCTTTGTTCTCAT 57.992 40.909 15.76 0.00 0.00 2.90
976 1326 5.639506 TCGAAGGAAGCTTTGTTCTCATAAG 59.360 40.000 15.76 4.11 0.00 1.73
980 1330 6.773638 AGGAAGCTTTGTTCTCATAAGAAGA 58.226 36.000 0.00 0.00 42.14 2.87
982 1332 7.721399 AGGAAGCTTTGTTCTCATAAGAAGAAA 59.279 33.333 0.00 1.28 46.61 2.52
988 1338 8.856490 TTTGTTCTCATAAGAAGAAAAGTTGC 57.144 30.769 0.00 0.00 46.13 4.17
989 1339 6.658831 TGTTCTCATAAGAAGAAAAGTTGCG 58.341 36.000 0.00 0.00 42.14 4.85
1097 1453 3.918220 CGTCGGCATGAGCTTCGC 61.918 66.667 0.00 0.00 41.70 4.70
1101 1457 2.439156 GGCATGAGCTTCGCCCTT 60.439 61.111 10.12 0.00 40.07 3.95
1107 1463 3.296709 GAGCTTCGCCCTTGACGGA 62.297 63.158 0.00 0.00 33.16 4.69
1117 1473 0.321564 CCTTGACGGATTGTGGCAGA 60.322 55.000 0.00 0.00 33.16 4.26
1253 1621 0.952497 CACTTGCTGCAGTCCGTCAT 60.952 55.000 16.64 0.00 0.00 3.06
1269 1637 2.125269 ATCGCCGGCGTTAGCTTT 60.125 55.556 44.16 20.36 44.37 3.51
1272 1640 2.951458 GCCGGCGTTAGCTTTTGT 59.049 55.556 12.58 0.00 44.37 2.83
1285 1653 1.604278 GCTTTTGTTTCGACAGCCTCT 59.396 47.619 0.00 0.00 0.00 3.69
1291 1659 2.094757 TTTCGACAGCCTCTTCGCCA 62.095 55.000 0.00 0.00 35.15 5.69
1359 1727 2.667536 CACTTGCTGCAGTCCGCT 60.668 61.111 16.64 0.00 43.06 5.52
1377 1745 4.817936 GCCGCGGGCGTTACCTTA 62.818 66.667 29.38 0.00 39.62 2.69
1378 1746 2.107546 CCGCGGGCGTTACCTTAT 59.892 61.111 20.10 0.00 39.10 1.73
1379 1747 2.241880 CCGCGGGCGTTACCTTATG 61.242 63.158 20.10 0.00 39.10 1.90
1380 1748 2.877974 CGCGGGCGTTACCTTATGC 61.878 63.158 4.64 0.00 39.10 3.14
1381 1749 1.523032 GCGGGCGTTACCTTATGCT 60.523 57.895 0.00 0.00 39.10 3.79
1382 1750 1.093496 GCGGGCGTTACCTTATGCTT 61.093 55.000 0.00 0.00 39.10 3.91
1383 1751 0.935196 CGGGCGTTACCTTATGCTTC 59.065 55.000 0.00 0.00 39.10 3.86
1384 1752 0.935196 GGGCGTTACCTTATGCTTCG 59.065 55.000 0.00 0.00 39.10 3.79
1385 1753 0.935196 GGCGTTACCTTATGCTTCGG 59.065 55.000 0.00 0.00 34.51 4.30
1386 1754 1.472026 GGCGTTACCTTATGCTTCGGA 60.472 52.381 0.00 0.00 34.51 4.55
1387 1755 2.273557 GCGTTACCTTATGCTTCGGAA 58.726 47.619 0.00 0.00 0.00 4.30
1388 1756 2.674357 GCGTTACCTTATGCTTCGGAAA 59.326 45.455 0.00 0.00 0.00 3.13
1389 1757 3.484721 GCGTTACCTTATGCTTCGGAAAC 60.485 47.826 0.00 0.00 0.00 2.78
1390 1758 3.063045 CGTTACCTTATGCTTCGGAAACC 59.937 47.826 0.00 0.00 0.00 3.27
1391 1759 4.259356 GTTACCTTATGCTTCGGAAACCT 58.741 43.478 0.00 0.00 0.00 3.50
1392 1760 2.987232 ACCTTATGCTTCGGAAACCTC 58.013 47.619 0.00 0.00 0.00 3.85
1393 1761 1.933853 CCTTATGCTTCGGAAACCTCG 59.066 52.381 0.00 0.00 0.00 4.63
1394 1762 2.618053 CTTATGCTTCGGAAACCTCGT 58.382 47.619 0.00 0.00 0.00 4.18
1395 1763 2.754946 TATGCTTCGGAAACCTCGTT 57.245 45.000 0.00 0.00 0.00 3.85
1396 1764 1.156736 ATGCTTCGGAAACCTCGTTG 58.843 50.000 0.00 0.00 0.00 4.10
1397 1765 1.206831 GCTTCGGAAACCTCGTTGC 59.793 57.895 0.00 0.00 0.00 4.17
1398 1766 1.491563 CTTCGGAAACCTCGTTGCG 59.508 57.895 0.00 0.00 42.91 4.85
1399 1767 1.897398 CTTCGGAAACCTCGTTGCGG 61.897 60.000 0.00 0.00 41.98 5.69
1400 1768 4.084888 CGGAAACCTCGTTGCGGC 62.085 66.667 0.00 0.00 38.51 6.53
1401 1769 4.084888 GGAAACCTCGTTGCGGCG 62.085 66.667 0.51 0.51 0.00 6.46
1402 1770 3.039588 GAAACCTCGTTGCGGCGA 61.040 61.111 12.98 2.58 39.22 5.54
1403 1771 2.358247 AAACCTCGTTGCGGCGAT 60.358 55.556 12.98 0.00 40.29 4.58
1404 1772 2.292802 GAAACCTCGTTGCGGCGATC 62.293 60.000 12.98 0.00 40.29 3.69
1458 1826 4.099170 GCGCTCTGGCACTTGCTG 62.099 66.667 0.00 0.00 41.70 4.41
1459 1827 4.099170 CGCTCTGGCACTTGCTGC 62.099 66.667 0.38 0.00 46.31 5.25
1466 1834 4.395583 GCACTTGCTGCAGTCCGC 62.396 66.667 16.64 7.72 46.29 5.54
1467 1835 3.730761 CACTTGCTGCAGTCCGCC 61.731 66.667 16.64 0.00 41.33 6.13
1549 1917 0.242825 TCTAGTGGTGCCGTTCGAAG 59.757 55.000 0.00 0.00 0.00 3.79
1554 1922 4.430423 GTGCCGTTCGAAGCGCTG 62.430 66.667 12.58 0.00 36.57 5.18
1623 1991 0.471617 GTCTGGGGCAGCTCATACAT 59.528 55.000 0.00 0.00 0.00 2.29
1636 2004 0.509929 CATACATGGCTGCATCGACG 59.490 55.000 0.50 0.00 0.00 5.12
2056 2433 3.636231 TCTGGTTCTGGTGGCGGG 61.636 66.667 0.00 0.00 0.00 6.13
2061 2438 3.319198 TTCTGGTGGCGGGTCCTC 61.319 66.667 0.00 0.00 35.26 3.71
2127 2504 4.767255 CTGGCCGGAGTGCTGGTC 62.767 72.222 5.28 0.00 45.79 4.02
2145 2522 2.171940 GCACAAGCGCTCGTCTTG 59.828 61.111 12.06 7.58 44.71 3.02
2149 2526 1.664649 CAAGCGCTCGTCTTGGTCA 60.665 57.895 12.06 0.00 37.77 4.02
2214 2591 3.524606 GGTGCGCTCGCCTACCTA 61.525 66.667 9.73 0.00 39.75 3.08
2226 2603 1.413227 GCCTACCTACTCCCCATCTGT 60.413 57.143 0.00 0.00 0.00 3.41
2259 2636 2.039974 CAGCGTTACCATGGCTGCA 61.040 57.895 13.04 0.00 46.39 4.41
2333 2710 3.309296 GGATGTACTTCCAGATCCTCCA 58.691 50.000 20.15 0.00 35.86 3.86
2335 2712 4.349342 GGATGTACTTCCAGATCCTCCATT 59.651 45.833 20.15 0.00 35.86 3.16
2424 2801 2.668550 GTCGCCCTTTTCAGCCGT 60.669 61.111 0.00 0.00 0.00 5.68
2440 2817 2.331893 CGTGGATTTTCAGGCGGCA 61.332 57.895 13.08 0.00 0.00 5.69
2478 2855 0.935196 GCAAAACCTTGTCGACGACT 59.065 50.000 26.86 5.60 34.79 4.18
2479 2856 1.070776 GCAAAACCTTGTCGACGACTC 60.071 52.381 26.86 3.99 34.79 3.36
2480 2857 1.525619 CAAAACCTTGTCGACGACTCC 59.474 52.381 26.86 3.23 33.15 3.85
2481 2858 1.038280 AAACCTTGTCGACGACTCCT 58.962 50.000 26.86 5.96 33.15 3.69
2526 2912 2.627221 CGAGGATGATCAGATGTGGACT 59.373 50.000 0.09 0.00 0.00 3.85
2528 2914 2.971330 AGGATGATCAGATGTGGACTCC 59.029 50.000 0.09 0.00 0.00 3.85
2531 2917 1.483827 TGATCAGATGTGGACTCCTGC 59.516 52.381 0.00 0.00 0.00 4.85
2532 2918 1.483827 GATCAGATGTGGACTCCTGCA 59.516 52.381 0.00 0.00 0.00 4.41
2608 3003 2.779506 GGATCCAACTTTTGTCTCCGT 58.220 47.619 6.95 0.00 0.00 4.69
2628 3023 3.131396 GTTCCACAGGTGTGTCTTGTAG 58.869 50.000 9.22 0.00 44.21 2.74
2655 3507 3.330701 ACCTCCTTTCTCCATTTGCACTA 59.669 43.478 0.00 0.00 0.00 2.74
2667 3519 3.788227 TTTGCACTAGAGGACCAATGT 57.212 42.857 0.00 0.00 0.00 2.71
2672 3524 3.733337 CACTAGAGGACCAATGTATGCC 58.267 50.000 0.00 0.00 0.00 4.40
2673 3525 2.706190 ACTAGAGGACCAATGTATGCCC 59.294 50.000 0.00 0.00 0.00 5.36
2674 3526 0.846693 AGAGGACCAATGTATGCCCC 59.153 55.000 0.00 0.00 0.00 5.80
2675 3527 0.846693 GAGGACCAATGTATGCCCCT 59.153 55.000 0.00 0.00 33.64 4.79
2676 3528 1.215423 GAGGACCAATGTATGCCCCTT 59.785 52.381 0.00 0.00 31.87 3.95
2689 3541 5.654650 TGTATGCCCCTTTCGATGTAATTTT 59.345 36.000 0.00 0.00 0.00 1.82
2690 3542 4.448537 TGCCCCTTTCGATGTAATTTTG 57.551 40.909 0.00 0.00 0.00 2.44
2691 3543 3.829601 TGCCCCTTTCGATGTAATTTTGT 59.170 39.130 0.00 0.00 0.00 2.83
2692 3544 4.173256 GCCCCTTTCGATGTAATTTTGTG 58.827 43.478 0.00 0.00 0.00 3.33
2693 3545 4.173256 CCCCTTTCGATGTAATTTTGTGC 58.827 43.478 0.00 0.00 0.00 4.57
2694 3546 3.851403 CCCTTTCGATGTAATTTTGTGCG 59.149 43.478 0.00 0.00 0.00 5.34
2695 3547 4.472286 CCTTTCGATGTAATTTTGTGCGT 58.528 39.130 0.00 0.00 0.00 5.24
2696 3548 5.391097 CCCTTTCGATGTAATTTTGTGCGTA 60.391 40.000 0.00 0.00 0.00 4.42
2697 3549 5.506832 CCTTTCGATGTAATTTTGTGCGTAC 59.493 40.000 0.00 0.00 0.00 3.67
2698 3550 5.849357 TTCGATGTAATTTTGTGCGTACT 57.151 34.783 4.97 0.00 0.00 2.73
2774 3628 5.221722 ACGGATCATATGCCAACTTATGTCT 60.222 40.000 0.00 0.00 36.06 3.41
2843 3698 3.079578 ACGACATCGAAAGGTACAGAGA 58.920 45.455 8.54 0.00 43.02 3.10
2858 3713 9.930693 AAGGTACAGAGAAACTTACAGATTAAG 57.069 33.333 0.00 0.00 0.00 1.85
2859 3714 8.035984 AGGTACAGAGAAACTTACAGATTAAGC 58.964 37.037 0.00 0.00 0.00 3.09
2860 3715 8.035984 GGTACAGAGAAACTTACAGATTAAGCT 58.964 37.037 0.00 0.00 0.00 3.74
2883 3738 4.363999 AGCTAACAACATAGTGCGATCTC 58.636 43.478 0.00 0.00 0.00 2.75
2924 3779 2.695359 TCAGAAAGGCATGAACCGTAC 58.305 47.619 0.00 0.00 33.69 3.67
2926 3781 2.416547 CAGAAAGGCATGAACCGTACTG 59.583 50.000 0.00 0.00 33.69 2.74
2927 3782 2.038557 AGAAAGGCATGAACCGTACTGT 59.961 45.455 0.00 0.00 33.69 3.55
2928 3783 1.808411 AAGGCATGAACCGTACTGTG 58.192 50.000 0.00 0.00 33.69 3.66
2929 3784 0.673644 AGGCATGAACCGTACTGTGC 60.674 55.000 0.00 0.00 33.69 4.57
2930 3785 0.953471 GGCATGAACCGTACTGTGCA 60.953 55.000 0.00 0.00 34.45 4.57
2931 3786 0.165944 GCATGAACCGTACTGTGCAC 59.834 55.000 10.75 10.75 33.09 4.57
2932 3787 1.795768 CATGAACCGTACTGTGCACT 58.204 50.000 19.41 0.28 0.00 4.40
2933 3788 2.143122 CATGAACCGTACTGTGCACTT 58.857 47.619 19.41 7.60 0.00 3.16
2939 3794 1.792949 CCGTACTGTGCACTTTGAGAC 59.207 52.381 19.41 6.61 0.00 3.36
2952 3807 2.479566 TTGAGACCTGCTTGGCTTAG 57.520 50.000 0.00 0.00 40.22 2.18
3036 3900 3.723235 CTGACATCGCCCTCCACCG 62.723 68.421 0.00 0.00 0.00 4.94
3069 3933 7.964666 AACTCAATAGCTAGTCTCTAACCTT 57.035 36.000 0.00 0.00 0.00 3.50
3106 4141 2.223971 ACACGAATCATATGGACGACCC 60.224 50.000 18.20 0.00 34.81 4.46
3161 4196 3.416156 GGATGACTCCTTTGAAAGTGCT 58.584 45.455 4.02 0.00 38.65 4.40
3164 4199 4.637483 TGACTCCTTTGAAAGTGCTTTG 57.363 40.909 4.02 0.00 32.11 2.77
3165 4200 4.016444 TGACTCCTTTGAAAGTGCTTTGT 58.984 39.130 4.02 0.00 32.11 2.83
3167 4202 4.998788 ACTCCTTTGAAAGTGCTTTGTTC 58.001 39.130 4.02 0.00 32.11 3.18
3169 4204 5.185828 ACTCCTTTGAAAGTGCTTTGTTCTT 59.814 36.000 4.02 0.00 32.11 2.52
3172 4207 6.934083 TCCTTTGAAAGTGCTTTGTTCTTTTT 59.066 30.769 4.02 0.00 32.59 1.94
3195 4230 1.904287 TCCCCGAATGTTGAAAGTGG 58.096 50.000 0.00 0.00 0.00 4.00
3199 4234 3.552068 CCCCGAATGTTGAAAGTGGTTTC 60.552 47.826 0.00 0.00 42.27 2.78
3201 4236 4.202111 CCCGAATGTTGAAAGTGGTTTCTT 60.202 41.667 0.01 0.00 42.39 2.52
3212 4247 1.068541 GTGGTTTCTTCCATCGGCAAC 60.069 52.381 0.00 0.00 39.81 4.17
3232 4267 7.830575 GGCAACGAAATCATACACAATTTATG 58.169 34.615 0.00 0.00 0.00 1.90
3233 4268 7.487829 GGCAACGAAATCATACACAATTTATGT 59.512 33.333 0.00 0.00 45.34 2.29
3295 4330 7.227049 TCTTTATGAAACCATTGTTCCTTCC 57.773 36.000 0.00 0.00 32.15 3.46
3311 4346 6.072728 TGTTCCTTCCTTGTATGAATTGTTCG 60.073 38.462 0.00 0.00 0.00 3.95
3312 4347 5.800296 TCCTTCCTTGTATGAATTGTTCGA 58.200 37.500 0.00 0.00 0.00 3.71
3420 4455 6.295575 CCTGATCAAATCTAGGTAGCTAAGGG 60.296 46.154 2.81 0.00 0.00 3.95
3422 4457 6.495181 TGATCAAATCTAGGTAGCTAAGGGAG 59.505 42.308 2.81 0.00 0.00 4.30
3430 4465 6.954684 TCTAGGTAGCTAAGGGAGAATATTGG 59.045 42.308 2.81 0.00 0.00 3.16
3461 4496 3.297134 AGTTGTGTTGGGACATCAGTT 57.703 42.857 0.00 0.00 38.85 3.16
3466 4889 2.290641 GTGTTGGGACATCAGTTGTGTC 59.709 50.000 0.00 0.00 44.01 3.67
3496 4919 5.825593 ACCAATGAAAGTCAGACCTTAGA 57.174 39.130 0.00 0.00 0.00 2.10
3561 4984 3.592898 AAAAATGAATTCCTCCCGTGC 57.407 42.857 2.27 0.00 0.00 5.34
3562 4985 2.514458 AAATGAATTCCTCCCGTGCT 57.486 45.000 2.27 0.00 0.00 4.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
14 15 1.746615 GATCTCTGCCGCTTGCCAA 60.747 57.895 0.00 0.00 40.16 4.52
38 39 8.988064 ACTATTAACCATGCTCGAATAGTATG 57.012 34.615 14.10 0.00 45.17 2.39
50 51 8.557029 GGTTGTTGTCTATACTATTAACCATGC 58.443 37.037 0.00 0.00 34.14 4.06
67 68 5.880054 ACATTGTATAGCTGGTTGTTGTC 57.120 39.130 0.00 0.00 0.00 3.18
174 177 7.554118 AGAAACATTGTGATAGTGTAAGATGGG 59.446 37.037 0.00 0.00 0.00 4.00
178 181 7.390440 CCCAAGAAACATTGTGATAGTGTAAGA 59.610 37.037 0.00 0.00 0.00 2.10
183 186 5.106157 GGACCCAAGAAACATTGTGATAGTG 60.106 44.000 0.00 0.00 0.00 2.74
203 206 4.385825 TGTAAATTGACAGTCACAGGACC 58.614 43.478 1.52 0.00 45.48 4.46
217 220 5.238583 AGAAGGGAAGACGACTGTAAATTG 58.761 41.667 0.00 0.00 0.00 2.32
219 222 4.380655 CGAGAAGGGAAGACGACTGTAAAT 60.381 45.833 0.00 0.00 0.00 1.40
285 290 7.035840 AGAGCAAAGCATAATGTAAGGATTG 57.964 36.000 0.00 0.00 0.00 2.67
286 291 7.559170 AGAAGAGCAAAGCATAATGTAAGGATT 59.441 33.333 0.00 0.00 0.00 3.01
296 301 5.199024 TGCAAAAGAAGAGCAAAGCATAA 57.801 34.783 0.00 0.00 34.97 1.90
297 302 4.852134 TGCAAAAGAAGAGCAAAGCATA 57.148 36.364 0.00 0.00 34.97 3.14
298 303 3.738830 TGCAAAAGAAGAGCAAAGCAT 57.261 38.095 0.00 0.00 34.97 3.79
303 308 1.755959 TGCCTTGCAAAAGAAGAGCAA 59.244 42.857 0.00 0.00 45.07 3.91
305 310 2.514205 TTGCCTTGCAAAAGAAGAGC 57.486 45.000 0.00 0.00 45.96 4.09
327 332 5.047377 AGCATGTGGTAGGTTTTGGTTTATG 60.047 40.000 0.00 0.00 0.00 1.90
331 336 2.890945 GAGCATGTGGTAGGTTTTGGTT 59.109 45.455 0.00 0.00 0.00 3.67
339 344 1.137872 GAGGTGAGAGCATGTGGTAGG 59.862 57.143 0.00 0.00 0.00 3.18
344 349 0.738762 CGTGGAGGTGAGAGCATGTG 60.739 60.000 0.00 0.00 0.00 3.21
345 350 1.188219 ACGTGGAGGTGAGAGCATGT 61.188 55.000 0.00 0.00 0.00 3.21
347 352 1.557099 TTACGTGGAGGTGAGAGCAT 58.443 50.000 0.00 0.00 0.00 3.79
348 353 1.476891 GATTACGTGGAGGTGAGAGCA 59.523 52.381 0.00 0.00 0.00 4.26
453 460 6.942576 GGATGGATTAAGCACACCAATAGTAT 59.057 38.462 0.00 0.00 36.00 2.12
459 466 3.448093 TGGATGGATTAAGCACACCAA 57.552 42.857 0.00 0.00 36.00 3.67
460 467 3.668141 ATGGATGGATTAAGCACACCA 57.332 42.857 4.92 4.92 36.83 4.17
461 468 4.402155 TCAAATGGATGGATTAAGCACACC 59.598 41.667 0.00 0.00 0.00 4.16
462 469 5.581126 TCAAATGGATGGATTAAGCACAC 57.419 39.130 0.00 0.00 0.00 3.82
463 470 6.602410 TTTCAAATGGATGGATTAAGCACA 57.398 33.333 0.00 0.00 0.00 4.57
464 471 7.063780 CAGTTTTCAAATGGATGGATTAAGCAC 59.936 37.037 0.00 0.00 0.00 4.40
465 472 7.098477 CAGTTTTCAAATGGATGGATTAAGCA 58.902 34.615 0.00 0.00 0.00 3.91
466 473 7.099120 ACAGTTTTCAAATGGATGGATTAAGC 58.901 34.615 0.00 0.00 0.00 3.09
467 474 7.485913 CGACAGTTTTCAAATGGATGGATTAAG 59.514 37.037 0.00 0.00 0.00 1.85
468 475 7.040062 ACGACAGTTTTCAAATGGATGGATTAA 60.040 33.333 0.00 0.00 0.00 1.40
469 476 6.432783 ACGACAGTTTTCAAATGGATGGATTA 59.567 34.615 0.00 0.00 0.00 1.75
470 477 5.243730 ACGACAGTTTTCAAATGGATGGATT 59.756 36.000 0.00 0.00 0.00 3.01
471 478 4.766891 ACGACAGTTTTCAAATGGATGGAT 59.233 37.500 0.00 0.00 0.00 3.41
472 479 4.023279 CACGACAGTTTTCAAATGGATGGA 60.023 41.667 0.00 0.00 0.00 3.41
473 480 4.229096 CACGACAGTTTTCAAATGGATGG 58.771 43.478 0.00 0.00 0.00 3.51
474 481 4.023279 TCCACGACAGTTTTCAAATGGATG 60.023 41.667 0.00 0.00 30.08 3.51
475 482 4.023193 GTCCACGACAGTTTTCAAATGGAT 60.023 41.667 0.00 0.00 37.34 3.41
476 483 3.314080 GTCCACGACAGTTTTCAAATGGA 59.686 43.478 0.00 0.00 32.62 3.41
477 484 3.066064 TGTCCACGACAGTTTTCAAATGG 59.934 43.478 0.00 0.00 37.67 3.16
478 485 4.285807 TGTCCACGACAGTTTTCAAATG 57.714 40.909 0.00 0.00 37.67 2.32
479 486 4.974368 TTGTCCACGACAGTTTTCAAAT 57.026 36.364 0.00 0.00 43.69 2.32
480 487 4.768130 TTTGTCCACGACAGTTTTCAAA 57.232 36.364 0.00 0.00 43.69 2.69
481 488 4.456222 TCTTTTGTCCACGACAGTTTTCAA 59.544 37.500 0.00 0.00 43.69 2.69
482 489 4.004314 TCTTTTGTCCACGACAGTTTTCA 58.996 39.130 0.00 0.00 43.69 2.69
483 490 4.609691 TCTTTTGTCCACGACAGTTTTC 57.390 40.909 0.00 0.00 43.69 2.29
484 491 5.379732 TTTCTTTTGTCCACGACAGTTTT 57.620 34.783 0.00 0.00 43.69 2.43
485 492 4.142469 CCTTTCTTTTGTCCACGACAGTTT 60.142 41.667 0.00 0.00 43.69 2.66
486 493 3.377172 CCTTTCTTTTGTCCACGACAGTT 59.623 43.478 0.00 0.00 43.69 3.16
487 494 2.943033 CCTTTCTTTTGTCCACGACAGT 59.057 45.455 0.00 0.00 43.69 3.55
488 495 2.290641 CCCTTTCTTTTGTCCACGACAG 59.709 50.000 0.00 0.00 43.69 3.51
489 496 2.092861 TCCCTTTCTTTTGTCCACGACA 60.093 45.455 0.00 0.00 41.09 4.35
490 497 2.567985 TCCCTTTCTTTTGTCCACGAC 58.432 47.619 0.00 0.00 0.00 4.34
491 498 3.284793 TTCCCTTTCTTTTGTCCACGA 57.715 42.857 0.00 0.00 0.00 4.35
492 499 3.243401 CCTTTCCCTTTCTTTTGTCCACG 60.243 47.826 0.00 0.00 0.00 4.94
493 500 3.492656 GCCTTTCCCTTTCTTTTGTCCAC 60.493 47.826 0.00 0.00 0.00 4.02
494 501 2.698274 GCCTTTCCCTTTCTTTTGTCCA 59.302 45.455 0.00 0.00 0.00 4.02
495 502 2.965831 AGCCTTTCCCTTTCTTTTGTCC 59.034 45.455 0.00 0.00 0.00 4.02
496 503 5.784578 TTAGCCTTTCCCTTTCTTTTGTC 57.215 39.130 0.00 0.00 0.00 3.18
497 504 5.661312 ACTTTAGCCTTTCCCTTTCTTTTGT 59.339 36.000 0.00 0.00 0.00 2.83
498 505 6.161855 ACTTTAGCCTTTCCCTTTCTTTTG 57.838 37.500 0.00 0.00 0.00 2.44
499 506 6.611642 AGAACTTTAGCCTTTCCCTTTCTTTT 59.388 34.615 0.00 0.00 0.00 2.27
500 507 6.136857 AGAACTTTAGCCTTTCCCTTTCTTT 58.863 36.000 0.00 0.00 0.00 2.52
501 508 5.706447 AGAACTTTAGCCTTTCCCTTTCTT 58.294 37.500 0.00 0.00 0.00 2.52
502 509 5.326283 AGAACTTTAGCCTTTCCCTTTCT 57.674 39.130 0.00 0.00 0.00 2.52
503 510 6.348295 CGTAAGAACTTTAGCCTTTCCCTTTC 60.348 42.308 0.00 0.00 43.02 2.62
504 511 5.472478 CGTAAGAACTTTAGCCTTTCCCTTT 59.528 40.000 0.00 0.00 43.02 3.11
505 512 5.001874 CGTAAGAACTTTAGCCTTTCCCTT 58.998 41.667 0.00 0.00 43.02 3.95
506 513 4.041321 ACGTAAGAACTTTAGCCTTTCCCT 59.959 41.667 0.00 0.00 43.62 4.20
507 514 4.321718 ACGTAAGAACTTTAGCCTTTCCC 58.678 43.478 0.00 0.00 43.62 3.97
508 515 4.992951 TGACGTAAGAACTTTAGCCTTTCC 59.007 41.667 0.00 0.00 43.62 3.13
509 516 5.924825 TCTGACGTAAGAACTTTAGCCTTTC 59.075 40.000 0.00 0.00 43.62 2.62
510 517 5.850614 TCTGACGTAAGAACTTTAGCCTTT 58.149 37.500 0.00 0.00 43.62 3.11
511 518 5.464030 TCTGACGTAAGAACTTTAGCCTT 57.536 39.130 0.00 0.00 43.62 4.35
512 519 5.662674 ATCTGACGTAAGAACTTTAGCCT 57.337 39.130 6.73 0.00 43.62 4.58
513 520 6.723131 AAATCTGACGTAAGAACTTTAGCC 57.277 37.500 6.73 0.00 43.62 3.93
514 521 9.742552 CTAAAAATCTGACGTAAGAACTTTAGC 57.257 33.333 22.22 0.00 43.62 3.09
517 524 9.321562 TGTCTAAAAATCTGACGTAAGAACTTT 57.678 29.630 6.73 11.47 43.62 2.66
518 525 8.882415 TGTCTAAAAATCTGACGTAAGAACTT 57.118 30.769 6.73 0.64 43.62 2.66
519 526 8.926710 CATGTCTAAAAATCTGACGTAAGAACT 58.073 33.333 6.73 0.00 43.62 3.01
520 527 8.922676 TCATGTCTAAAAATCTGACGTAAGAAC 58.077 33.333 6.73 0.00 43.62 3.01
521 528 8.922676 GTCATGTCTAAAAATCTGACGTAAGAA 58.077 33.333 6.73 0.00 43.62 2.52
522 529 8.085909 TGTCATGTCTAAAAATCTGACGTAAGA 58.914 33.333 4.72 4.72 43.62 2.10
524 531 8.596271 TTGTCATGTCTAAAAATCTGACGTAA 57.404 30.769 0.00 0.00 36.63 3.18
525 532 8.596271 TTTGTCATGTCTAAAAATCTGACGTA 57.404 30.769 0.00 0.00 36.63 3.57
526 533 7.490962 TTTGTCATGTCTAAAAATCTGACGT 57.509 32.000 0.00 0.00 36.63 4.34
527 534 8.229811 TCATTTGTCATGTCTAAAAATCTGACG 58.770 33.333 0.00 0.00 36.63 4.35
528 535 9.897744 TTCATTTGTCATGTCTAAAAATCTGAC 57.102 29.630 0.00 0.00 34.91 3.51
532 539 9.962759 GCATTTCATTTGTCATGTCTAAAAATC 57.037 29.630 0.00 0.00 0.00 2.17
533 540 9.715121 AGCATTTCATTTGTCATGTCTAAAAAT 57.285 25.926 0.00 0.00 0.00 1.82
534 541 9.545105 AAGCATTTCATTTGTCATGTCTAAAAA 57.455 25.926 0.00 0.00 0.00 1.94
535 542 9.545105 AAAGCATTTCATTTGTCATGTCTAAAA 57.455 25.926 0.00 0.00 27.08 1.52
536 543 9.545105 AAAAGCATTTCATTTGTCATGTCTAAA 57.455 25.926 0.00 0.00 37.28 1.85
539 546 9.146984 CATAAAAGCATTTCATTTGTCATGTCT 57.853 29.630 0.00 0.00 37.28 3.41
540 547 8.385111 CCATAAAAGCATTTCATTTGTCATGTC 58.615 33.333 0.00 0.00 37.28 3.06
541 548 7.148373 GCCATAAAAGCATTTCATTTGTCATGT 60.148 33.333 0.00 0.00 37.28 3.21
542 549 7.148390 TGCCATAAAAGCATTTCATTTGTCATG 60.148 33.333 0.00 0.00 37.28 3.07
543 550 6.879993 TGCCATAAAAGCATTTCATTTGTCAT 59.120 30.769 0.00 0.00 37.28 3.06
544 551 6.228995 TGCCATAAAAGCATTTCATTTGTCA 58.771 32.000 0.00 0.00 37.28 3.58
545 552 6.724694 TGCCATAAAAGCATTTCATTTGTC 57.275 33.333 0.00 0.00 37.28 3.18
546 553 7.690952 ATTGCCATAAAAGCATTTCATTTGT 57.309 28.000 0.00 0.00 37.28 2.83
547 554 8.973835 AAATTGCCATAAAAGCATTTCATTTG 57.026 26.923 0.00 0.00 37.28 2.32
555 562 9.195411 CGTCAATATAAATTGCCATAAAAGCAT 57.805 29.630 0.00 0.00 41.96 3.79
556 563 8.194104 ACGTCAATATAAATTGCCATAAAAGCA 58.806 29.630 0.00 0.00 41.96 3.91
557 564 8.479280 CACGTCAATATAAATTGCCATAAAAGC 58.521 33.333 0.00 0.00 41.96 3.51
558 565 9.729023 TCACGTCAATATAAATTGCCATAAAAG 57.271 29.630 0.00 0.00 41.96 2.27
559 566 9.729023 CTCACGTCAATATAAATTGCCATAAAA 57.271 29.630 0.00 0.00 41.96 1.52
560 567 8.349245 CCTCACGTCAATATAAATTGCCATAAA 58.651 33.333 0.00 0.00 41.96 1.40
561 568 7.717436 TCCTCACGTCAATATAAATTGCCATAA 59.283 33.333 0.00 0.00 41.96 1.90
562 569 7.220740 TCCTCACGTCAATATAAATTGCCATA 58.779 34.615 0.00 0.00 41.96 2.74
563 570 6.061441 TCCTCACGTCAATATAAATTGCCAT 58.939 36.000 0.00 0.00 41.96 4.40
564 571 5.432645 TCCTCACGTCAATATAAATTGCCA 58.567 37.500 0.00 0.00 41.96 4.92
565 572 6.204688 TCATCCTCACGTCAATATAAATTGCC 59.795 38.462 0.00 0.00 41.96 4.52
566 573 7.189693 TCATCCTCACGTCAATATAAATTGC 57.810 36.000 0.00 0.00 41.96 3.56
575 582 8.964476 ACTAAATTTATCATCCTCACGTCAAT 57.036 30.769 0.00 0.00 0.00 2.57
576 583 8.786826 AACTAAATTTATCATCCTCACGTCAA 57.213 30.769 0.00 0.00 0.00 3.18
577 584 8.786826 AAACTAAATTTATCATCCTCACGTCA 57.213 30.769 0.00 0.00 0.00 4.35
585 592 9.599322 CGTGCTCATAAACTAAATTTATCATCC 57.401 33.333 0.00 0.00 40.82 3.51
595 602 8.617809 GGGAAATTATCGTGCTCATAAACTAAA 58.382 33.333 0.00 0.00 0.00 1.85
596 603 7.990886 AGGGAAATTATCGTGCTCATAAACTAA 59.009 33.333 0.00 0.00 0.00 2.24
597 604 7.506114 AGGGAAATTATCGTGCTCATAAACTA 58.494 34.615 0.00 0.00 0.00 2.24
598 605 6.357367 AGGGAAATTATCGTGCTCATAAACT 58.643 36.000 0.00 0.00 0.00 2.66
599 606 6.619801 AGGGAAATTATCGTGCTCATAAAC 57.380 37.500 0.00 0.00 0.00 2.01
600 607 7.441157 CACTAGGGAAATTATCGTGCTCATAAA 59.559 37.037 0.00 0.00 0.00 1.40
601 608 6.929049 CACTAGGGAAATTATCGTGCTCATAA 59.071 38.462 0.00 0.00 0.00 1.90
602 609 6.266786 TCACTAGGGAAATTATCGTGCTCATA 59.733 38.462 0.00 0.00 0.00 2.15
603 610 5.070446 TCACTAGGGAAATTATCGTGCTCAT 59.930 40.000 0.00 0.00 0.00 2.90
604 611 4.404394 TCACTAGGGAAATTATCGTGCTCA 59.596 41.667 0.00 0.00 0.00 4.26
605 612 4.945246 TCACTAGGGAAATTATCGTGCTC 58.055 43.478 0.00 0.00 0.00 4.26
606 613 5.104900 AGTTCACTAGGGAAATTATCGTGCT 60.105 40.000 9.53 0.00 0.00 4.40
607 614 5.006746 CAGTTCACTAGGGAAATTATCGTGC 59.993 44.000 9.53 0.00 0.00 5.34
608 615 6.338146 TCAGTTCACTAGGGAAATTATCGTG 58.662 40.000 9.53 0.00 0.00 4.35
609 616 6.380274 TCTCAGTTCACTAGGGAAATTATCGT 59.620 38.462 9.53 0.00 0.00 3.73
610 617 6.697892 GTCTCAGTTCACTAGGGAAATTATCG 59.302 42.308 9.53 0.00 0.00 2.92
611 618 6.697892 CGTCTCAGTTCACTAGGGAAATTATC 59.302 42.308 9.53 0.00 0.00 1.75
612 619 6.407074 CCGTCTCAGTTCACTAGGGAAATTAT 60.407 42.308 9.53 0.00 0.00 1.28
613 620 5.105473 CCGTCTCAGTTCACTAGGGAAATTA 60.105 44.000 9.53 0.00 0.00 1.40
614 621 4.322801 CCGTCTCAGTTCACTAGGGAAATT 60.323 45.833 9.53 0.00 0.00 1.82
615 622 3.195825 CCGTCTCAGTTCACTAGGGAAAT 59.804 47.826 9.53 5.17 0.00 2.17
616 623 2.561419 CCGTCTCAGTTCACTAGGGAAA 59.439 50.000 9.53 0.00 0.00 3.13
617 624 2.168496 CCGTCTCAGTTCACTAGGGAA 58.832 52.381 2.41 2.41 0.00 3.97
618 625 1.353358 TCCGTCTCAGTTCACTAGGGA 59.647 52.381 0.00 0.00 0.00 4.20
619 626 1.835494 TCCGTCTCAGTTCACTAGGG 58.165 55.000 0.00 0.00 0.00 3.53
620 627 4.177026 CAAATCCGTCTCAGTTCACTAGG 58.823 47.826 0.00 0.00 0.00 3.02
621 628 4.810790 ACAAATCCGTCTCAGTTCACTAG 58.189 43.478 0.00 0.00 0.00 2.57
622 629 4.523173 AGACAAATCCGTCTCAGTTCACTA 59.477 41.667 0.00 0.00 42.70 2.74
623 630 3.322254 AGACAAATCCGTCTCAGTTCACT 59.678 43.478 0.00 0.00 42.70 3.41
624 631 3.430218 CAGACAAATCCGTCTCAGTTCAC 59.570 47.826 0.00 0.00 44.49 3.18
625 632 3.653344 CAGACAAATCCGTCTCAGTTCA 58.347 45.455 0.00 0.00 44.49 3.18
626 633 2.413453 GCAGACAAATCCGTCTCAGTTC 59.587 50.000 0.00 0.00 44.49 3.01
627 634 2.037772 AGCAGACAAATCCGTCTCAGTT 59.962 45.455 0.00 0.00 44.49 3.16
628 635 1.620819 AGCAGACAAATCCGTCTCAGT 59.379 47.619 0.00 0.00 44.49 3.41
629 636 2.266554 GAGCAGACAAATCCGTCTCAG 58.733 52.381 0.00 0.00 44.49 3.35
630 637 1.402852 CGAGCAGACAAATCCGTCTCA 60.403 52.381 0.00 0.00 44.49 3.27
631 638 1.272781 CGAGCAGACAAATCCGTCTC 58.727 55.000 0.00 0.00 44.49 3.36
633 640 0.992802 GACGAGCAGACAAATCCGTC 59.007 55.000 0.00 0.00 39.32 4.79
634 641 0.317160 TGACGAGCAGACAAATCCGT 59.683 50.000 0.00 0.00 0.00 4.69
635 642 1.428448 TTGACGAGCAGACAAATCCG 58.572 50.000 0.00 0.00 32.02 4.18
636 643 5.545658 TTAATTGACGAGCAGACAAATCC 57.454 39.130 0.00 0.00 37.96 3.01
637 644 6.603095 AGTTTAATTGACGAGCAGACAAATC 58.397 36.000 0.00 0.00 37.96 2.17
638 645 6.560253 AGTTTAATTGACGAGCAGACAAAT 57.440 33.333 0.00 0.00 37.96 2.32
639 646 6.198687 CAAGTTTAATTGACGAGCAGACAAA 58.801 36.000 0.00 0.00 37.96 2.83
640 647 5.277779 CCAAGTTTAATTGACGAGCAGACAA 60.278 40.000 0.00 0.00 38.70 3.18
641 648 4.213270 CCAAGTTTAATTGACGAGCAGACA 59.787 41.667 0.00 0.00 31.55 3.41
642 649 4.451096 TCCAAGTTTAATTGACGAGCAGAC 59.549 41.667 0.00 0.00 31.55 3.51
643 650 4.451096 GTCCAAGTTTAATTGACGAGCAGA 59.549 41.667 0.00 0.00 31.55 4.26
644 651 4.666655 CGTCCAAGTTTAATTGACGAGCAG 60.667 45.833 4.48 0.00 36.60 4.24
645 652 3.185594 CGTCCAAGTTTAATTGACGAGCA 59.814 43.478 4.48 0.00 36.60 4.26
646 653 3.430895 TCGTCCAAGTTTAATTGACGAGC 59.569 43.478 8.76 0.00 37.57 5.03
647 654 5.050634 TGTTCGTCCAAGTTTAATTGACGAG 60.051 40.000 12.03 0.55 40.39 4.18
651 658 6.438259 TTGTGTTCGTCCAAGTTTAATTGA 57.562 33.333 0.00 0.00 31.55 2.57
677 684 7.378966 TGACAAAACAAACACTTTTCATGGTA 58.621 30.769 0.00 0.00 0.00 3.25
686 693 4.470334 AGCCATGACAAAACAAACACTT 57.530 36.364 0.00 0.00 0.00 3.16
688 695 6.654793 TTTTAGCCATGACAAAACAAACAC 57.345 33.333 0.00 0.00 0.00 3.32
693 700 6.922957 GTCAGATTTTTAGCCATGACAAAACA 59.077 34.615 0.00 0.00 37.56 2.83
727 734 5.392595 GCTCAACGGTTCCAAAAGCATATTA 60.393 40.000 0.00 0.00 33.03 0.98
729 736 3.119495 GCTCAACGGTTCCAAAAGCATAT 60.119 43.478 0.00 0.00 33.03 1.78
730 737 2.227865 GCTCAACGGTTCCAAAAGCATA 59.772 45.455 0.00 0.00 33.03 3.14
731 738 1.000274 GCTCAACGGTTCCAAAAGCAT 60.000 47.619 0.00 0.00 33.03 3.79
733 740 0.318699 GGCTCAACGGTTCCAAAAGC 60.319 55.000 0.00 0.00 0.00 3.51
734 741 0.313987 GGGCTCAACGGTTCCAAAAG 59.686 55.000 0.00 0.00 0.00 2.27
735 742 1.110518 GGGGCTCAACGGTTCCAAAA 61.111 55.000 0.00 0.00 0.00 2.44
736 743 1.529713 GGGGCTCAACGGTTCCAAA 60.530 57.895 0.00 0.00 0.00 3.28
738 745 3.172106 TGGGGCTCAACGGTTCCA 61.172 61.111 0.00 0.00 0.00 3.53
739 746 2.359975 CTGGGGCTCAACGGTTCC 60.360 66.667 0.00 0.00 0.00 3.62
740 747 0.536460 TTTCTGGGGCTCAACGGTTC 60.536 55.000 0.00 0.00 0.00 3.62
742 749 1.228154 GTTTCTGGGGCTCAACGGT 60.228 57.895 0.00 0.00 0.00 4.83
743 750 1.971695 GGTTTCTGGGGCTCAACGG 60.972 63.158 0.00 0.00 0.00 4.44
744 751 1.228124 TGGTTTCTGGGGCTCAACG 60.228 57.895 0.00 0.00 0.00 4.10
745 752 0.178990 ACTGGTTTCTGGGGCTCAAC 60.179 55.000 0.00 0.00 0.00 3.18
746 753 1.440618 TACTGGTTTCTGGGGCTCAA 58.559 50.000 0.00 0.00 0.00 3.02
747 754 1.668826 ATACTGGTTTCTGGGGCTCA 58.331 50.000 0.00 0.00 0.00 4.26
751 758 1.638589 TCCCAATACTGGTTTCTGGGG 59.361 52.381 5.63 0.00 45.85 4.96
752 759 3.356290 CTTCCCAATACTGGTTTCTGGG 58.644 50.000 0.00 0.00 46.99 4.45
755 808 4.323257 CGTACCTTCCCAATACTGGTTTCT 60.323 45.833 0.00 0.00 41.72 2.52
760 813 2.483188 GCTCGTACCTTCCCAATACTGG 60.483 54.545 0.00 0.00 43.10 4.00
794 847 4.170062 CATTGGGCAGCAGCGACG 62.170 66.667 0.00 0.00 43.41 5.12
795 848 3.818787 CCATTGGGCAGCAGCGAC 61.819 66.667 0.00 0.00 43.41 5.19
806 859 5.554070 AGAAGAAAAGAAAATGCCCATTGG 58.446 37.500 0.00 0.00 0.00 3.16
807 860 7.500720 AAAGAAGAAAAGAAAATGCCCATTG 57.499 32.000 0.00 0.00 0.00 2.82
808 861 7.041848 CGAAAAGAAGAAAAGAAAATGCCCATT 60.042 33.333 0.00 0.00 0.00 3.16
809 862 6.424812 CGAAAAGAAGAAAAGAAAATGCCCAT 59.575 34.615 0.00 0.00 0.00 4.00
810 863 5.752955 CGAAAAGAAGAAAAGAAAATGCCCA 59.247 36.000 0.00 0.00 0.00 5.36
811 864 5.753438 ACGAAAAGAAGAAAAGAAAATGCCC 59.247 36.000 0.00 0.00 0.00 5.36
812 865 6.475402 TCACGAAAAGAAGAAAAGAAAATGCC 59.525 34.615 0.00 0.00 0.00 4.40
813 866 7.449934 TCACGAAAAGAAGAAAAGAAAATGC 57.550 32.000 0.00 0.00 0.00 3.56
814 867 9.289303 TCTTCACGAAAAGAAGAAAAGAAAATG 57.711 29.630 3.36 0.00 46.07 2.32
824 877 2.802816 GCTGCTCTTCACGAAAAGAAGA 59.197 45.455 5.62 5.62 46.66 2.87
825 878 2.805099 AGCTGCTCTTCACGAAAAGAAG 59.195 45.455 0.00 0.00 42.94 2.85
826 879 2.545526 CAGCTGCTCTTCACGAAAAGAA 59.454 45.455 0.00 0.00 34.95 2.52
827 880 2.138320 CAGCTGCTCTTCACGAAAAGA 58.862 47.619 0.00 0.00 34.22 2.52
828 881 2.138320 TCAGCTGCTCTTCACGAAAAG 58.862 47.619 9.47 0.00 0.00 2.27
829 882 2.238942 TCAGCTGCTCTTCACGAAAA 57.761 45.000 9.47 0.00 0.00 2.29
830 883 2.071540 CATCAGCTGCTCTTCACGAAA 58.928 47.619 9.47 0.00 0.00 3.46
831 884 1.718396 CATCAGCTGCTCTTCACGAA 58.282 50.000 9.47 0.00 0.00 3.85
832 885 3.430779 CATCAGCTGCTCTTCACGA 57.569 52.632 9.47 0.00 0.00 4.35
855 908 2.115291 GCTTCGTCATGGGCTTCCC 61.115 63.158 0.00 0.00 45.71 3.97
856 909 2.115291 GGCTTCGTCATGGGCTTCC 61.115 63.158 0.00 0.00 0.00 3.46
857 910 2.464459 CGGCTTCGTCATGGGCTTC 61.464 63.158 0.00 0.00 0.00 3.86
858 911 2.436646 CGGCTTCGTCATGGGCTT 60.437 61.111 0.00 0.00 0.00 4.35
862 915 4.473520 AGGGCGGCTTCGTCATGG 62.474 66.667 9.56 0.00 40.79 3.66
863 916 3.197790 CAGGGCGGCTTCGTCATG 61.198 66.667 9.56 0.00 43.52 3.07
864 917 3.390521 TCAGGGCGGCTTCGTCAT 61.391 61.111 9.56 0.00 40.79 3.06
865 918 4.373116 GTCAGGGCGGCTTCGTCA 62.373 66.667 9.56 0.00 40.79 4.35
866 919 4.070552 AGTCAGGGCGGCTTCGTC 62.071 66.667 9.56 0.00 37.85 4.20
867 920 4.379243 CAGTCAGGGCGGCTTCGT 62.379 66.667 9.56 0.00 36.07 3.85
887 940 4.816385 TCTTTATTAGAGCGAAGGCCATTG 59.184 41.667 5.01 0.00 41.24 2.82
896 949 5.886474 TGAGGAGTCTTCTTTATTAGAGCGA 59.114 40.000 3.69 0.00 33.51 4.93
905 958 3.511934 GCTGGAGTGAGGAGTCTTCTTTA 59.488 47.826 3.69 0.00 0.00 1.85
906 959 2.301583 GCTGGAGTGAGGAGTCTTCTTT 59.698 50.000 3.69 0.00 0.00 2.52
932 1275 0.252421 TCTGGAGTGGAGTGGCTGAT 60.252 55.000 0.00 0.00 0.00 2.90
950 1297 3.997021 TGAGAACAAAGCTTCCTTCGATC 59.003 43.478 0.00 0.00 0.00 3.69
952 1299 3.469008 TGAGAACAAAGCTTCCTTCGA 57.531 42.857 0.00 0.00 0.00 3.71
957 1307 7.440523 TTCTTCTTATGAGAACAAAGCTTCC 57.559 36.000 0.00 0.00 36.99 3.46
959 1309 8.907885 ACTTTTCTTCTTATGAGAACAAAGCTT 58.092 29.630 18.40 0.00 38.82 3.74
961 1311 8.962111 CAACTTTTCTTCTTATGAGAACAAAGC 58.038 33.333 18.40 0.00 38.82 3.51
962 1312 8.962111 GCAACTTTTCTTCTTATGAGAACAAAG 58.038 33.333 17.57 17.57 39.84 2.77
963 1313 7.643764 CGCAACTTTTCTTCTTATGAGAACAAA 59.356 33.333 0.00 0.00 36.99 2.83
972 1322 4.757149 AGCTCACGCAACTTTTCTTCTTAT 59.243 37.500 0.00 0.00 39.10 1.73
973 1323 4.127171 AGCTCACGCAACTTTTCTTCTTA 58.873 39.130 0.00 0.00 39.10 2.10
976 1326 3.665585 GCTAGCTCACGCAACTTTTCTTC 60.666 47.826 7.70 0.00 39.10 2.87
980 1330 0.875059 GGCTAGCTCACGCAACTTTT 59.125 50.000 15.72 0.00 39.10 2.27
982 1332 0.036010 ATGGCTAGCTCACGCAACTT 60.036 50.000 15.72 0.00 39.10 2.66
983 1333 0.742281 CATGGCTAGCTCACGCAACT 60.742 55.000 15.72 0.00 39.10 3.16
985 1335 1.450134 CCATGGCTAGCTCACGCAA 60.450 57.895 15.72 0.00 39.10 4.85
986 1336 2.187685 CCATGGCTAGCTCACGCA 59.812 61.111 15.72 3.66 39.10 5.24
988 1338 2.590007 GGCCATGGCTAGCTCACG 60.590 66.667 34.70 3.47 41.60 4.35
989 1339 0.817229 GAAGGCCATGGCTAGCTCAC 60.817 60.000 34.70 17.14 37.50 3.51
1011 1367 3.108289 CTCCGTGCTGCTGTGTCG 61.108 66.667 0.00 0.00 0.00 4.35
1097 1453 1.303236 TGCCACAATCCGTCAAGGG 60.303 57.895 0.00 0.00 41.52 3.95
1101 1457 0.612744 TGATCTGCCACAATCCGTCA 59.387 50.000 0.00 0.00 0.00 4.35
1107 1463 1.162181 CCGCGATGATCTGCCACAAT 61.162 55.000 8.23 0.00 0.00 2.71
1117 1473 2.203070 GAACAGGCCCGCGATGAT 60.203 61.111 8.23 0.00 0.00 2.45
1200 1568 3.695606 GGCAGGACGAGCAGGTGA 61.696 66.667 0.00 0.00 0.00 4.02
1207 1575 4.485554 CTCGAAAGGCAGGACGAG 57.514 61.111 0.00 0.00 44.10 4.18
1263 1631 2.806244 GAGGCTGTCGAAACAAAAGCTA 59.194 45.455 0.00 0.00 34.24 3.32
1269 1637 1.497991 CGAAGAGGCTGTCGAAACAA 58.502 50.000 10.83 0.00 39.64 2.83
1272 1640 1.374252 GGCGAAGAGGCTGTCGAAA 60.374 57.895 18.51 0.00 42.90 3.46
1365 1733 0.935196 CGAAGCATAAGGTAACGCCC 59.065 55.000 0.00 0.00 46.39 6.13
1371 1739 3.429822 CGAGGTTTCCGAAGCATAAGGTA 60.430 47.826 0.00 0.00 35.74 3.08
1373 1741 1.933853 CGAGGTTTCCGAAGCATAAGG 59.066 52.381 0.00 0.00 35.74 2.69
1374 1742 2.618053 ACGAGGTTTCCGAAGCATAAG 58.382 47.619 0.00 0.00 35.74 1.73
1375 1743 2.739913 CAACGAGGTTTCCGAAGCATAA 59.260 45.455 0.00 0.00 35.74 1.90
1376 1744 2.343101 CAACGAGGTTTCCGAAGCATA 58.657 47.619 0.00 0.00 35.74 3.14
1377 1745 1.156736 CAACGAGGTTTCCGAAGCAT 58.843 50.000 0.00 0.00 35.74 3.79
1378 1746 1.503818 GCAACGAGGTTTCCGAAGCA 61.504 55.000 0.00 0.00 35.74 3.91
1379 1747 1.206831 GCAACGAGGTTTCCGAAGC 59.793 57.895 0.00 0.00 0.00 3.86
1380 1748 1.491563 CGCAACGAGGTTTCCGAAG 59.508 57.895 0.00 0.00 0.00 3.79
1381 1749 1.957186 CCGCAACGAGGTTTCCGAA 60.957 57.895 0.00 0.00 0.00 4.30
1382 1750 2.356553 CCGCAACGAGGTTTCCGA 60.357 61.111 0.00 0.00 0.00 4.55
1383 1751 4.084888 GCCGCAACGAGGTTTCCG 62.085 66.667 0.00 0.00 0.00 4.30
1384 1752 4.084888 CGCCGCAACGAGGTTTCC 62.085 66.667 0.00 0.00 34.06 3.13
1385 1753 2.292802 GATCGCCGCAACGAGGTTTC 62.293 60.000 4.31 0.00 46.69 2.78
1386 1754 2.358247 ATCGCCGCAACGAGGTTT 60.358 55.556 4.31 0.00 46.69 3.27
1387 1755 2.813908 GATCGCCGCAACGAGGTT 60.814 61.111 4.31 0.00 46.69 3.50
1470 1838 2.658593 CAGAAGCCGATACCCGCG 60.659 66.667 0.00 0.00 36.84 6.46
1471 1839 2.925162 AAGCAGAAGCCGATACCCGC 62.925 60.000 0.00 0.00 43.56 6.13
1472 1840 0.876342 GAAGCAGAAGCCGATACCCG 60.876 60.000 0.00 0.00 43.56 5.28
1473 1841 0.876342 CGAAGCAGAAGCCGATACCC 60.876 60.000 0.00 0.00 43.56 3.69
1474 1842 0.876342 CCGAAGCAGAAGCCGATACC 60.876 60.000 0.00 0.00 43.56 2.73
1475 1843 1.491505 GCCGAAGCAGAAGCCGATAC 61.492 60.000 0.00 0.00 43.56 2.24
1476 1844 1.227263 GCCGAAGCAGAAGCCGATA 60.227 57.895 0.00 0.00 43.56 2.92
1477 1845 2.512515 GCCGAAGCAGAAGCCGAT 60.513 61.111 0.00 0.00 43.56 4.18
1478 1846 4.002506 TGCCGAAGCAGAAGCCGA 62.003 61.111 0.00 0.00 46.52 5.54
1526 1894 3.296709 AACGGCACCACTAGAGCGG 62.297 63.158 0.00 2.28 35.12 5.52
1533 1901 2.665185 GCTTCGAACGGCACCACT 60.665 61.111 4.64 0.00 0.00 4.00
1690 2058 4.074526 GAGCCACTGCCAGAGCGA 62.075 66.667 0.00 0.00 44.31 4.93
1735 2103 1.004918 CCCAGAAGCCGTCGAAGTT 60.005 57.895 0.00 0.00 0.00 2.66
1736 2104 1.878656 CTCCCAGAAGCCGTCGAAGT 61.879 60.000 0.00 0.00 0.00 3.01
1768 2136 1.741770 CGGGAAGGTTGGCGAAGAG 60.742 63.158 0.00 0.00 0.00 2.85
1956 2333 4.329545 TCCTTGAGCCACCGCCAC 62.330 66.667 0.00 0.00 34.57 5.01
2110 2487 4.767255 GACCAGCACTCCGGCCAG 62.767 72.222 2.24 0.00 0.00 4.85
2128 2505 2.171940 CAAGACGAGCGCTTGTGC 59.828 61.111 34.41 23.34 38.29 4.57
2129 2506 1.891060 GACCAAGACGAGCGCTTGTG 61.891 60.000 34.41 21.40 40.79 3.33
2130 2507 1.664965 GACCAAGACGAGCGCTTGT 60.665 57.895 30.20 30.20 40.79 3.16
2131 2508 1.016130 ATGACCAAGACGAGCGCTTG 61.016 55.000 23.34 23.34 41.77 4.01
2132 2509 0.737715 GATGACCAAGACGAGCGCTT 60.738 55.000 13.26 0.00 0.00 4.68
2133 2510 1.153745 GATGACCAAGACGAGCGCT 60.154 57.895 11.27 11.27 0.00 5.92
2134 2511 1.153745 AGATGACCAAGACGAGCGC 60.154 57.895 0.00 0.00 0.00 5.92
2135 2512 1.416813 GCAGATGACCAAGACGAGCG 61.417 60.000 0.00 0.00 0.00 5.03
2136 2513 0.390340 TGCAGATGACCAAGACGAGC 60.390 55.000 0.00 0.00 0.00 5.03
2137 2514 2.159128 AGATGCAGATGACCAAGACGAG 60.159 50.000 0.00 0.00 0.00 4.18
2138 2515 1.827344 AGATGCAGATGACCAAGACGA 59.173 47.619 0.00 0.00 0.00 4.20
2139 2516 1.931841 CAGATGCAGATGACCAAGACG 59.068 52.381 0.00 0.00 0.00 4.18
2140 2517 1.669779 GCAGATGCAGATGACCAAGAC 59.330 52.381 5.17 0.00 41.59 3.01
2141 2518 1.741394 CGCAGATGCAGATGACCAAGA 60.741 52.381 5.55 0.00 42.21 3.02
2142 2519 0.656259 CGCAGATGCAGATGACCAAG 59.344 55.000 5.55 0.00 42.21 3.61
2143 2520 0.745486 CCGCAGATGCAGATGACCAA 60.745 55.000 5.55 0.00 42.21 3.67
2144 2521 1.153309 CCGCAGATGCAGATGACCA 60.153 57.895 5.55 0.00 42.21 4.02
2145 2522 1.890979 CCCGCAGATGCAGATGACC 60.891 63.158 5.55 0.00 42.21 4.02
2242 2619 2.040544 GTGCAGCCATGGTAACGCT 61.041 57.895 14.67 0.00 42.51 5.07
2243 2620 2.485122 GTGCAGCCATGGTAACGC 59.515 61.111 14.67 11.35 42.51 4.84
2314 2691 5.398353 CCAAATGGAGGATCTGGAAGTACAT 60.398 44.000 0.00 0.00 37.39 2.29
2333 2710 4.447342 CGAGGGGGCCAGCCAAAT 62.447 66.667 11.50 0.00 37.98 2.32
2352 2729 1.220477 GGAGAAGACAGCAGAGGCC 59.780 63.158 0.00 0.00 42.56 5.19
2424 2801 0.602562 CTTTGCCGCCTGAAAATCCA 59.397 50.000 0.00 0.00 0.00 3.41
2440 2817 2.187946 CCTCGGCATCGGCTCTTT 59.812 61.111 0.00 0.00 40.87 2.52
2469 2846 0.448593 CTTCCTCAGGAGTCGTCGAC 59.551 60.000 17.70 17.70 31.21 4.20
2473 2850 2.025793 TCTGATCTTCCTCAGGAGTCGT 60.026 50.000 0.00 0.00 42.42 4.34
2478 2855 3.574749 CCAGATCTGATCTTCCTCAGGA 58.425 50.000 24.62 0.00 42.42 3.86
2479 2856 2.633967 CCCAGATCTGATCTTCCTCAGG 59.366 54.545 24.62 13.56 42.42 3.86
2480 2857 3.307506 ACCCAGATCTGATCTTCCTCAG 58.692 50.000 24.62 5.56 43.33 3.35
2481 2858 3.411454 ACCCAGATCTGATCTTCCTCA 57.589 47.619 24.62 0.00 37.58 3.86
2496 2882 1.482182 TGATCATCCTCGTGAACCCAG 59.518 52.381 0.00 0.00 0.00 4.45
2500 2886 3.801050 CACATCTGATCATCCTCGTGAAC 59.199 47.826 0.00 0.00 0.00 3.18
2526 2912 2.165357 TAGGCTGATCTTCTGCAGGA 57.835 50.000 15.13 3.47 42.21 3.86
2528 2914 5.791666 TGATAATAGGCTGATCTTCTGCAG 58.208 41.667 7.63 7.63 42.21 4.41
2628 3023 5.010617 TGCAAATGGAGAAAGGAGGTTTTAC 59.989 40.000 0.00 0.00 0.00 2.01
2655 3507 0.846693 GGGGCATACATTGGTCCTCT 59.153 55.000 0.00 0.00 0.00 3.69
2667 3519 5.654650 ACAAAATTACATCGAAAGGGGCATA 59.345 36.000 0.00 0.00 0.00 3.14
2672 3524 3.851403 CGCACAAAATTACATCGAAAGGG 59.149 43.478 0.00 0.00 0.00 3.95
2673 3525 4.472286 ACGCACAAAATTACATCGAAAGG 58.528 39.130 0.00 0.00 0.00 3.11
2674 3526 6.304126 AGTACGCACAAAATTACATCGAAAG 58.696 36.000 0.00 0.00 0.00 2.62
2675 3527 6.230849 AGTACGCACAAAATTACATCGAAA 57.769 33.333 0.00 0.00 0.00 3.46
2676 3528 5.849357 AGTACGCACAAAATTACATCGAA 57.151 34.783 0.00 0.00 0.00 3.71
2689 3541 5.008217 AGCAAGACAAATTAAAGTACGCACA 59.992 36.000 0.00 0.00 0.00 4.57
2690 3542 5.449304 AGCAAGACAAATTAAAGTACGCAC 58.551 37.500 0.00 0.00 0.00 5.34
2691 3543 5.682943 AGCAAGACAAATTAAAGTACGCA 57.317 34.783 0.00 0.00 0.00 5.24
2692 3544 5.342259 CCAAGCAAGACAAATTAAAGTACGC 59.658 40.000 0.00 0.00 0.00 4.42
2693 3545 5.342259 GCCAAGCAAGACAAATTAAAGTACG 59.658 40.000 0.00 0.00 0.00 3.67
2694 3546 6.363357 CAGCCAAGCAAGACAAATTAAAGTAC 59.637 38.462 0.00 0.00 0.00 2.73
2695 3547 6.446318 CAGCCAAGCAAGACAAATTAAAGTA 58.554 36.000 0.00 0.00 0.00 2.24
2696 3548 5.291971 CAGCCAAGCAAGACAAATTAAAGT 58.708 37.500 0.00 0.00 0.00 2.66
2697 3549 4.151157 GCAGCCAAGCAAGACAAATTAAAG 59.849 41.667 0.00 0.00 0.00 1.85
2698 3550 4.057432 GCAGCCAAGCAAGACAAATTAAA 58.943 39.130 0.00 0.00 0.00 1.52
2774 3628 6.580788 TGAATTTCAGCCAAAAGATTGTCAA 58.419 32.000 0.00 0.00 34.60 3.18
2805 3660 8.389084 CGATGTCGTCGTTTCTGAACAGAAAA 62.389 42.308 24.94 12.61 45.49 2.29
2806 3661 7.007543 CGATGTCGTCGTTTCTGAACAGAAA 62.008 44.000 21.17 21.17 45.83 2.52
2807 3662 3.153676 TGTCGTCGTTTCTGAACAGAA 57.846 42.857 12.40 12.40 44.94 3.02
2808 3663 2.855660 TGTCGTCGTTTCTGAACAGA 57.144 45.000 0.00 0.00 35.44 3.41
2839 3694 8.073467 AGCTAGCTTAATCTGTAAGTTTCTCT 57.927 34.615 12.68 0.00 33.76 3.10
2843 3698 9.720769 TTGTTAGCTAGCTTAATCTGTAAGTTT 57.279 29.630 24.88 0.00 33.76 2.66
2857 3712 3.130516 TCGCACTATGTTGTTAGCTAGCT 59.869 43.478 23.12 23.12 0.00 3.32
2858 3713 3.444916 TCGCACTATGTTGTTAGCTAGC 58.555 45.455 6.62 6.62 0.00 3.42
2859 3714 5.524284 AGATCGCACTATGTTGTTAGCTAG 58.476 41.667 0.00 0.00 0.00 3.42
2860 3715 5.299531 AGAGATCGCACTATGTTGTTAGCTA 59.700 40.000 0.00 0.00 0.00 3.32
2883 3738 4.464244 TGAAACCTGTCCAGATCAGAGTAG 59.536 45.833 0.00 0.00 35.20 2.57
2924 3779 0.590195 GCAGGTCTCAAAGTGCACAG 59.410 55.000 21.04 7.65 35.91 3.66
2926 3781 1.002033 CAAGCAGGTCTCAAAGTGCAC 60.002 52.381 9.40 9.40 38.44 4.57
2927 3782 1.311859 CAAGCAGGTCTCAAAGTGCA 58.688 50.000 0.00 0.00 38.44 4.57
2928 3783 0.595095 CCAAGCAGGTCTCAAAGTGC 59.405 55.000 0.00 0.00 36.10 4.40
2929 3784 0.595095 GCCAAGCAGGTCTCAAAGTG 59.405 55.000 0.00 0.00 40.61 3.16
2930 3785 0.475906 AGCCAAGCAGGTCTCAAAGT 59.524 50.000 0.00 0.00 40.61 2.66
2931 3786 1.613836 AAGCCAAGCAGGTCTCAAAG 58.386 50.000 0.00 0.00 40.61 2.77
2932 3787 2.106511 ACTAAGCCAAGCAGGTCTCAAA 59.893 45.455 0.00 0.00 40.61 2.69
2933 3788 1.699634 ACTAAGCCAAGCAGGTCTCAA 59.300 47.619 0.00 0.00 40.61 3.02
2939 3794 4.077300 TCATATCACTAAGCCAAGCAGG 57.923 45.455 0.00 0.00 41.84 4.85
2952 3807 3.005472 TGCTAGTAGGCCGTTCATATCAC 59.995 47.826 0.00 0.00 0.00 3.06
3001 3865 1.067565 TCAGTGCGCCTAGAAAGACTG 60.068 52.381 4.18 9.55 33.59 3.51
3106 4141 3.377346 AGCTATTCCATCGTGCTAGTG 57.623 47.619 0.00 0.00 31.71 2.74
3172 4207 4.442192 CCACTTTCAACATTCGGGGAAAAA 60.442 41.667 0.00 0.00 0.00 1.94
3177 4212 1.616159 ACCACTTTCAACATTCGGGG 58.384 50.000 0.00 0.00 0.00 5.73
3178 4213 3.317993 AGAAACCACTTTCAACATTCGGG 59.682 43.478 0.00 0.00 38.67 5.14
3179 4214 4.568152 AGAAACCACTTTCAACATTCGG 57.432 40.909 0.00 0.00 38.67 4.30
3195 4230 1.153353 TCGTTGCCGATGGAAGAAAC 58.847 50.000 0.00 0.00 38.40 2.78
3199 4234 1.737236 TGATTTCGTTGCCGATGGAAG 59.263 47.619 0.00 0.00 43.80 3.46
3201 4236 2.036958 ATGATTTCGTTGCCGATGGA 57.963 45.000 0.00 0.00 43.80 3.41
3420 4455 9.289782 ACAACTTTATATCTGGCCAATATTCTC 57.710 33.333 19.16 0.00 0.00 2.87
3422 4457 8.850156 ACACAACTTTATATCTGGCCAATATTC 58.150 33.333 19.16 0.00 0.00 1.75
3430 4465 4.947388 TCCCAACACAACTTTATATCTGGC 59.053 41.667 0.00 0.00 0.00 4.85
3466 4889 2.361757 TGACTTTCATTGGTTGTGCCTG 59.638 45.455 0.00 0.00 38.35 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.