Multiple sequence alignment - TraesCS5D01G481300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G481300 chr5D 100.000 7119 0 0 1 7119 519349667 519342549 0.000000e+00 13147.0
1 TraesCS5D01G481300 chr5D 96.829 410 13 0 6710 7119 555202247 555202656 0.000000e+00 686.0
2 TraesCS5D01G481300 chr5D 83.129 326 48 6 4727 5045 519336738 519336413 2.510000e-74 291.0
3 TraesCS5D01G481300 chr5D 91.960 199 4 2 6468 6654 555202036 555202234 1.180000e-67 268.0
4 TraesCS5D01G481300 chr5D 82.545 275 36 4 5899 6169 519335762 519335496 1.540000e-56 231.0
5 TraesCS5D01G481300 chr5D 92.453 106 7 1 5580 5684 150835739 150835634 4.450000e-32 150.0
6 TraesCS5D01G481300 chr5D 96.774 31 1 0 95 125 472871324 472871294 1.300000e-02 52.8
7 TraesCS5D01G481300 chr5A 91.693 5369 241 91 345 5588 645778935 645773647 0.000000e+00 7254.0
8 TraesCS5D01G481300 chr5A 94.619 669 25 5 5732 6395 645773642 645772980 0.000000e+00 1026.0
9 TraesCS5D01G481300 chr5A 88.048 502 54 6 5081 5579 645765845 645765347 2.210000e-164 590.0
10 TraesCS5D01G481300 chr5A 81.735 438 52 14 4635 5045 645766736 645766300 2.460000e-89 340.0
11 TraesCS5D01G481300 chr5A 88.166 169 13 3 193 354 645780058 645779890 2.030000e-45 195.0
12 TraesCS5D01G481300 chr5A 89.583 144 14 1 1 144 645780473 645780331 1.580000e-41 182.0
13 TraesCS5D01G481300 chr5A 93.396 106 6 1 5580 5684 206730808 206730703 9.560000e-34 156.0
14 TraesCS5D01G481300 chr5A 83.740 123 13 5 5562 5684 558244636 558244751 7.550000e-20 110.0
15 TraesCS5D01G481300 chr5B 90.916 2785 144 56 1477 4198 653708966 653706228 0.000000e+00 3640.0
16 TraesCS5D01G481300 chr5B 90.376 904 38 15 419 1298 653709980 653709102 0.000000e+00 1142.0
17 TraesCS5D01G481300 chr5B 96.992 665 17 2 5766 6430 653704823 653704162 0.000000e+00 1114.0
18 TraesCS5D01G481300 chr5B 93.034 646 31 4 5011 5654 653705493 653704860 0.000000e+00 931.0
19 TraesCS5D01G481300 chr5B 90.744 659 54 5 4317 4969 653706231 653705574 0.000000e+00 872.0
20 TraesCS5D01G481300 chr5B 90.000 470 41 5 5113 5579 653652497 653652031 2.840000e-168 603.0
21 TraesCS5D01G481300 chr5B 92.123 292 20 3 133 422 653710386 653710096 6.650000e-110 409.0
22 TraesCS5D01G481300 chr5B 81.693 437 49 15 4635 5041 653653109 653652674 1.140000e-87 335.0
23 TraesCS5D01G481300 chr3D 93.816 663 25 4 6469 7119 37976886 37977544 0.000000e+00 983.0
24 TraesCS5D01G481300 chr7B 92.214 655 35 4 6476 7119 336364383 336363734 0.000000e+00 913.0
25 TraesCS5D01G481300 chr7B 89.778 675 36 9 6476 7119 637486850 637486178 0.000000e+00 833.0
26 TraesCS5D01G481300 chr7B 89.431 123 11 2 6478 6598 603747778 603747900 3.440000e-33 154.0
27 TraesCS5D01G481300 chr7B 86.429 140 14 3 5587 5722 39769429 39769291 1.600000e-31 148.0
28 TraesCS5D01G481300 chr7B 96.774 31 1 0 95 125 110528421 110528451 1.300000e-02 52.8
29 TraesCS5D01G481300 chr7B 100.000 28 0 0 98 125 351982880 351982907 1.300000e-02 52.8
30 TraesCS5D01G481300 chr3B 89.833 659 46 5 6477 7117 612112638 612113293 0.000000e+00 826.0
31 TraesCS5D01G481300 chr3B 86.577 149 16 2 5589 5737 187353163 187353307 2.060000e-35 161.0
32 TraesCS5D01G481300 chr3B 98.148 54 1 0 5684 5737 145505116 145505063 2.110000e-15 95.3
33 TraesCS5D01G481300 chr6B 88.012 659 61 5 6476 7119 204931398 204930743 0.000000e+00 763.0
34 TraesCS5D01G481300 chr6B 96.774 31 1 0 95 125 362447685 362447655 1.300000e-02 52.8
35 TraesCS5D01G481300 chr6B 100.000 28 0 0 98 125 367603891 367603864 1.300000e-02 52.8
36 TraesCS5D01G481300 chr6D 93.227 502 14 7 6618 7119 471327934 471328415 0.000000e+00 721.0
37 TraesCS5D01G481300 chr6D 95.876 97 4 0 5588 5684 90134889 90134985 2.660000e-34 158.0
38 TraesCS5D01G481300 chr6D 90.698 43 1 3 85 125 397449002 397448961 4.000000e-03 54.7
39 TraesCS5D01G481300 chr6D 90.698 43 1 3 85 125 397511078 397511037 4.000000e-03 54.7
40 TraesCS5D01G481300 chr6D 100.000 28 0 0 98 125 354417085 354417058 1.300000e-02 52.8
41 TraesCS5D01G481300 chr1D 91.837 441 30 3 6682 7119 359831001 359831438 1.700000e-170 610.0
42 TraesCS5D01G481300 chr2B 93.846 390 24 0 6730 7119 30536846 30536457 7.960000e-164 588.0
43 TraesCS5D01G481300 chr2B 84.971 173 9 2 5582 5737 76912307 76912135 7.390000e-35 159.0
44 TraesCS5D01G481300 chr2B 80.460 87 8 3 92 170 673609450 673609365 2.770000e-04 58.4
45 TraesCS5D01G481300 chr2B 90.698 43 1 3 85 125 258812655 258812696 4.000000e-03 54.7
46 TraesCS5D01G481300 chr2A 89.933 149 12 2 5589 5736 715815292 715815146 9.430000e-44 189.0
47 TraesCS5D01G481300 chr4A 79.239 289 36 15 6477 6745 633355515 633355799 5.670000e-41 180.0
48 TraesCS5D01G481300 chr4B 86.982 169 6 4 5587 5739 28724306 28724138 7.340000e-40 176.0
49 TraesCS5D01G481300 chr7A 78.893 289 38 14 6477 6745 731978207 731977922 2.640000e-39 174.0
50 TraesCS5D01G481300 chr7D 82.028 217 26 9 6474 6677 376939326 376939542 9.490000e-39 172.0
51 TraesCS5D01G481300 chr7D 89.516 124 11 2 6477 6598 218415131 218415254 9.560000e-34 156.0
52 TraesCS5D01G481300 chr7D 82.692 156 20 4 5589 5737 498267313 498267158 1.610000e-26 132.0
53 TraesCS5D01G481300 chr3A 86.061 165 6 2 5589 5737 726769128 726768965 2.060000e-35 161.0
54 TraesCS5D01G481300 chr3A 84.568 162 9 1 5589 5734 607058572 607058411 5.750000e-31 147.0
55 TraesCS5D01G481300 chr6A 95.876 97 4 0 5588 5684 297641382 297641286 2.660000e-34 158.0
56 TraesCS5D01G481300 chr6A 84.211 171 8 5 5583 5734 298461043 298461213 1.600000e-31 148.0
57 TraesCS5D01G481300 chr6A 100.000 28 0 0 98 125 250203331 250203358 1.300000e-02 52.8
58 TraesCS5D01G481300 chr4D 100.000 28 0 0 95 122 399087530 399087557 1.300000e-02 52.8
59 TraesCS5D01G481300 chr1B 100.000 28 0 0 95 122 342844164 342844191 1.300000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G481300 chr5D 519342549 519349667 7118 True 13147.000000 13147 100.000000 1 7119 1 chr5D.!!$R3 7118
1 TraesCS5D01G481300 chr5D 555202036 555202656 620 False 477.000000 686 94.394500 6468 7119 2 chr5D.!!$F1 651
2 TraesCS5D01G481300 chr5D 519335496 519336738 1242 True 261.000000 291 82.837000 4727 6169 2 chr5D.!!$R4 1442
3 TraesCS5D01G481300 chr5A 645772980 645780473 7493 True 2164.250000 7254 91.015250 1 6395 4 chr5A.!!$R3 6394
4 TraesCS5D01G481300 chr5A 645765347 645766736 1389 True 465.000000 590 84.891500 4635 5579 2 chr5A.!!$R2 944
5 TraesCS5D01G481300 chr5B 653704162 653710386 6224 True 1351.333333 3640 92.364167 133 6430 6 chr5B.!!$R2 6297
6 TraesCS5D01G481300 chr5B 653652031 653653109 1078 True 469.000000 603 85.846500 4635 5579 2 chr5B.!!$R1 944
7 TraesCS5D01G481300 chr3D 37976886 37977544 658 False 983.000000 983 93.816000 6469 7119 1 chr3D.!!$F1 650
8 TraesCS5D01G481300 chr7B 336363734 336364383 649 True 913.000000 913 92.214000 6476 7119 1 chr7B.!!$R2 643
9 TraesCS5D01G481300 chr7B 637486178 637486850 672 True 833.000000 833 89.778000 6476 7119 1 chr7B.!!$R3 643
10 TraesCS5D01G481300 chr3B 612112638 612113293 655 False 826.000000 826 89.833000 6477 7117 1 chr3B.!!$F2 640
11 TraesCS5D01G481300 chr6B 204930743 204931398 655 True 763.000000 763 88.012000 6476 7119 1 chr6B.!!$R1 643

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
337 577 0.474660 GGCCCTGTCCCCATCTCTAT 60.475 60.000 0.00 0.00 0.00 1.98 F
1475 2869 0.316278 ATCGTCGCTTCGTCTCGATG 60.316 55.000 12.25 8.18 41.55 3.84 F
1826 3234 0.035630 AGCTGAGCCACATTGACTCC 60.036 55.000 0.00 0.00 0.00 3.85 F
2386 3800 0.679002 CTCCACATGGCCAGGACAAG 60.679 60.000 26.87 13.38 34.44 3.16 F
3228 4662 1.134068 GGAGGAAAGTGTATCTGGCCC 60.134 57.143 0.00 0.00 0.00 5.80 F
4207 5670 2.166050 TGCACAACAGTTTTGCACAGAT 59.834 40.909 20.84 0.00 41.29 2.90 F
5248 7219 0.407139 AGAAGCTGGGCCAACTCATT 59.593 50.000 10.40 0.00 0.00 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1763 3171 0.031414 AGCCCCTACCGTTCCATAGT 60.031 55.000 0.00 0.00 0.00 2.12 R
3384 4846 0.108041 GGTGCAAATGGCCATGGAAG 60.108 55.000 21.63 10.68 43.89 3.46 R
3661 5123 2.028112 GCACATCTCAGTACCAAGGTGA 60.028 50.000 11.30 0.00 0.00 4.02 R
4181 5644 2.050691 GCAAAACTGTTGTGCATACCG 58.949 47.619 26.52 0.00 38.19 4.02 R
5124 7094 0.889186 AGCAGGTTTGGTAAGGCACG 60.889 55.000 0.00 0.00 32.18 5.34 R
5284 7255 0.111253 CCCCTTCCTTGTTCACAGCT 59.889 55.000 0.00 0.00 0.00 4.24 R
6457 8450 0.597377 GCTGGCTTTTCCCGTGTTTG 60.597 55.000 0.00 0.00 0.00 2.93 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
50 51 6.931840 TGTGCTAAAATTTGTTACATTTCCCC 59.068 34.615 0.00 0.00 0.00 4.81
51 52 6.931840 GTGCTAAAATTTGTTACATTTCCCCA 59.068 34.615 0.00 0.00 0.00 4.96
96 97 9.774742 ATGAGAATTTGAGTTTAATTAAGACGC 57.225 29.630 0.00 3.42 0.00 5.19
101 102 6.476243 TTGAGTTTAATTAAGACGCACTCC 57.524 37.500 18.01 6.86 0.00 3.85
102 103 4.933400 TGAGTTTAATTAAGACGCACTCCC 59.067 41.667 18.01 3.19 0.00 4.30
103 104 5.161943 AGTTTAATTAAGACGCACTCCCT 57.838 39.130 0.00 0.00 0.00 4.20
104 105 5.176592 AGTTTAATTAAGACGCACTCCCTC 58.823 41.667 0.00 0.00 0.00 4.30
105 106 2.693267 AATTAAGACGCACTCCCTCC 57.307 50.000 0.00 0.00 0.00 4.30
109 110 4.131088 GACGCACTCCCTCCGTCC 62.131 72.222 1.34 0.00 43.89 4.79
122 123 5.021458 TCCCTCCGTCCCATAATATAAGAC 58.979 45.833 0.00 0.00 0.00 3.01
127 128 4.421948 CGTCCCATAATATAAGACCGAGC 58.578 47.826 0.00 0.00 0.00 5.03
135 136 7.255104 CCATAATATAAGACCGAGCTTGCAAAA 60.255 37.037 0.00 0.00 0.00 2.44
144 145 3.360758 CCGAGCTTGCAAAACGATTTTAC 59.639 43.478 17.01 0.00 0.00 2.01
152 153 7.148656 GCTTGCAAAACGATTTTACATTATGGT 60.149 33.333 0.00 0.00 0.00 3.55
165 166 4.748701 ACATTATGGTACGGAGGGAGTAT 58.251 43.478 0.00 0.00 0.00 2.12
166 167 4.527038 ACATTATGGTACGGAGGGAGTATG 59.473 45.833 0.00 0.00 0.00 2.39
187 188 3.006247 GTTTCTTGAGATCCAGCTCCAC 58.994 50.000 0.00 0.00 33.95 4.02
334 574 2.692368 TGGCCCTGTCCCCATCTC 60.692 66.667 0.00 0.00 0.00 2.75
336 576 1.074471 GGCCCTGTCCCCATCTCTA 60.074 63.158 0.00 0.00 0.00 2.43
337 577 0.474660 GGCCCTGTCCCCATCTCTAT 60.475 60.000 0.00 0.00 0.00 1.98
526 1850 1.890876 TTGTCACCGGATCACCAAAG 58.109 50.000 9.46 0.00 35.59 2.77
604 1928 1.445582 GTCGTTGCCTACCACTCCG 60.446 63.158 0.00 0.00 0.00 4.63
608 1932 1.674817 CGTTGCCTACCACTCCGAAAT 60.675 52.381 0.00 0.00 0.00 2.17
609 1933 1.737793 GTTGCCTACCACTCCGAAATG 59.262 52.381 0.00 0.00 0.00 2.32
991 2360 3.035363 GGAAGGTTCTAGAGGAAGAGGG 58.965 54.545 0.00 0.00 34.23 4.30
1225 2594 2.383170 ATGCAGAACATGGTACGCG 58.617 52.632 3.53 3.53 37.70 6.01
1231 2600 2.009625 GAACATGGTACGCGCGTCTG 62.010 60.000 41.35 30.53 0.00 3.51
1232 2601 2.506217 CATGGTACGCGCGTCTGT 60.506 61.111 41.35 20.91 0.00 3.41
1234 2603 4.746951 TGGTACGCGCGTCTGTCG 62.747 66.667 41.35 6.70 43.12 4.35
1244 2613 1.139095 CGTCTGTCGCCTTCCTACC 59.861 63.158 0.00 0.00 0.00 3.18
1245 2614 1.139095 GTCTGTCGCCTTCCTACCG 59.861 63.158 0.00 0.00 0.00 4.02
1249 2618 3.515286 TCGCCTTCCTACCGCTCG 61.515 66.667 0.00 0.00 0.00 5.03
1251 2620 3.839432 GCCTTCCTACCGCTCGCT 61.839 66.667 0.00 0.00 0.00 4.93
1253 2622 2.024871 CTTCCTACCGCTCGCTCG 59.975 66.667 0.00 0.00 0.00 5.03
1254 2623 4.189188 TTCCTACCGCTCGCTCGC 62.189 66.667 0.00 0.00 0.00 5.03
1256 2625 4.914420 CCTACCGCTCGCTCGCAG 62.914 72.222 0.00 0.00 0.00 5.18
1340 2728 0.744414 AGATGTGCCGGGTTCGATTG 60.744 55.000 2.18 0.00 39.00 2.67
1432 2821 3.305744 GCTGGGAAGCATTTTCGGTTTTA 60.306 43.478 0.00 0.00 34.41 1.52
1435 2824 3.368013 GGGAAGCATTTTCGGTTTTAGGG 60.368 47.826 0.00 0.00 0.00 3.53
1439 2828 4.086457 AGCATTTTCGGTTTTAGGGTGAT 58.914 39.130 0.00 0.00 0.00 3.06
1440 2829 4.526650 AGCATTTTCGGTTTTAGGGTGATT 59.473 37.500 0.00 0.00 0.00 2.57
1451 2840 5.404466 TTTAGGGTGATTGGATTTGCTTG 57.596 39.130 0.00 0.00 0.00 4.01
1452 2841 1.551883 AGGGTGATTGGATTTGCTTGC 59.448 47.619 0.00 0.00 0.00 4.01
1453 2842 1.632422 GGTGATTGGATTTGCTTGCG 58.368 50.000 0.00 0.00 0.00 4.85
1458 2852 2.652941 TTGGATTTGCTTGCGGAATC 57.347 45.000 10.84 10.84 0.00 2.52
1472 2866 1.194896 GGAATCGTCGCTTCGTCTCG 61.195 60.000 2.98 0.00 0.00 4.04
1475 2869 0.316278 ATCGTCGCTTCGTCTCGATG 60.316 55.000 12.25 8.18 41.55 3.84
1563 2957 2.806434 TGGTGCCAACAGCTGATTTAT 58.194 42.857 23.35 0.00 44.77 1.40
1579 2973 7.558807 AGCTGATTTATGATGAAATGGAACTGA 59.441 33.333 0.00 0.00 0.00 3.41
1626 3020 7.447374 TTCCATGTGGTTTAGTTACTGATTG 57.553 36.000 0.00 0.00 36.34 2.67
1657 3051 8.792830 AAGAGACAATTATTGCTTACTTGCTA 57.207 30.769 4.68 0.00 0.00 3.49
1658 3052 8.430801 AGAGACAATTATTGCTTACTTGCTAG 57.569 34.615 4.68 0.00 0.00 3.42
1750 3158 8.667987 TTTTTATGCTTGTAATGCTTAGTTCG 57.332 30.769 0.00 0.00 37.94 3.95
1763 3171 4.211584 TGCTTAGTTCGACGCACATTTAAA 59.788 37.500 0.00 0.00 0.00 1.52
1781 3189 0.835276 AACTATGGAACGGTAGGGGC 59.165 55.000 0.00 0.00 0.00 5.80
1826 3234 0.035630 AGCTGAGCCACATTGACTCC 60.036 55.000 0.00 0.00 0.00 3.85
1996 3404 5.008019 GTGCTCAATGTTGGGTGTATCTATG 59.992 44.000 0.00 0.00 0.00 2.23
2038 3446 8.382130 GTGCAATTGTTAATGTGTAATTCCATG 58.618 33.333 7.40 0.00 0.00 3.66
2039 3447 7.548427 TGCAATTGTTAATGTGTAATTCCATGG 59.452 33.333 4.97 4.97 0.00 3.66
2051 3459 6.879458 GTGTAATTCCATGGAAAGTAGTGACT 59.121 38.462 30.28 8.43 37.69 3.41
2055 3463 5.304686 TCCATGGAAAGTAGTGACTGTTT 57.695 39.130 13.46 0.00 35.52 2.83
2145 3556 6.016024 TGCCAATATGTTGCTCTGGATAATTC 60.016 38.462 0.00 0.00 33.90 2.17
2166 3578 6.530019 TTCCAAATTAATTCTGAGGCTTCC 57.470 37.500 0.10 0.00 0.00 3.46
2211 3624 5.418524 TGTGTTGCTGCCATAAATATTGTCT 59.581 36.000 0.00 0.00 0.00 3.41
2323 3737 7.170965 AGATCGATAATGCTTTGGATACCATT 58.829 34.615 0.00 0.00 31.53 3.16
2350 3764 4.217550 TCCAACGGGATTCAAAATGTTCTC 59.782 41.667 0.00 0.00 38.64 2.87
2386 3800 0.679002 CTCCACATGGCCAGGACAAG 60.679 60.000 26.87 13.38 34.44 3.16
2434 3848 5.265191 TCTTGTGCTCTAGATCTGGTAAGT 58.735 41.667 5.18 0.00 0.00 2.24
2439 3853 5.239963 GTGCTCTAGATCTGGTAAGTACCTC 59.760 48.000 5.18 0.00 46.58 3.85
2440 3854 5.132985 TGCTCTAGATCTGGTAAGTACCTCT 59.867 44.000 5.18 6.12 46.58 3.69
2441 3855 6.066032 GCTCTAGATCTGGTAAGTACCTCTT 58.934 44.000 5.18 0.00 46.58 2.85
2442 3856 7.147355 TGCTCTAGATCTGGTAAGTACCTCTTA 60.147 40.741 5.18 0.00 46.58 2.10
2468 3882 8.517878 ACTTCTTCCAACAGATTGAATGTAATG 58.482 33.333 0.00 0.00 38.15 1.90
2540 3954 5.005740 TGTTGCTGTTGCTTCTGATATCTT 58.994 37.500 3.98 0.00 40.48 2.40
2685 4099 1.350019 TCTCTCTACAGTCGGTGGACA 59.650 52.381 0.00 0.00 45.92 4.02
2700 4114 4.319477 CGGTGGACAGTTTCAATGTTACAG 60.319 45.833 0.00 0.00 0.00 2.74
2769 4183 2.561858 GGTAATACTAGGCGAGGAAGGG 59.438 54.545 0.00 0.00 0.00 3.95
2877 4291 8.433421 AATGAAAACTGTATGGTTACTATCCG 57.567 34.615 0.00 0.00 0.00 4.18
2878 4292 6.342906 TGAAAACTGTATGGTTACTATCCGG 58.657 40.000 0.00 0.00 0.00 5.14
2881 4295 4.733165 ACTGTATGGTTACTATCCGGCTA 58.267 43.478 0.00 0.00 0.00 3.93
2882 4296 5.331069 ACTGTATGGTTACTATCCGGCTAT 58.669 41.667 0.00 0.00 0.00 2.97
2883 4297 5.418209 ACTGTATGGTTACTATCCGGCTATC 59.582 44.000 0.00 0.00 0.00 2.08
2884 4298 4.708421 TGTATGGTTACTATCCGGCTATCC 59.292 45.833 0.00 0.00 0.00 2.59
2886 4300 2.111255 TGGTTACTATCCGGCTATCCCT 59.889 50.000 0.00 0.00 0.00 4.20
2887 4301 2.496470 GGTTACTATCCGGCTATCCCTG 59.504 54.545 0.00 0.00 0.00 4.45
2889 4303 2.400467 ACTATCCGGCTATCCCTGTT 57.600 50.000 0.00 0.00 0.00 3.16
2890 4304 1.971357 ACTATCCGGCTATCCCTGTTG 59.029 52.381 0.00 0.00 0.00 3.33
2891 4305 2.248248 CTATCCGGCTATCCCTGTTGA 58.752 52.381 0.00 0.00 0.00 3.18
2893 4307 1.507140 TCCGGCTATCCCTGTTGATT 58.493 50.000 0.00 0.00 0.00 2.57
2895 4309 1.134098 CCGGCTATCCCTGTTGATTGT 60.134 52.381 0.00 0.00 0.00 2.71
2903 4337 2.171003 CCCTGTTGATTGTTCTTCCCC 58.829 52.381 0.00 0.00 0.00 4.81
2915 4349 4.991776 TGTTCTTCCCCAATGATGTAACA 58.008 39.130 0.00 0.00 0.00 2.41
2984 4418 6.150140 GTCAGCTTCATTCTCAACCTACATTT 59.850 38.462 0.00 0.00 0.00 2.32
3026 4460 2.416296 CGCTGACGTTATAGTCACCCAA 60.416 50.000 0.00 0.00 45.18 4.12
3180 4614 5.361285 TGCAAAACTAAGGTATGGTGTGTTT 59.639 36.000 0.00 0.00 0.00 2.83
3211 4645 5.430886 TCCATCACAAGTAATGACATGGAG 58.569 41.667 0.00 0.00 41.64 3.86
3226 4660 3.209410 CATGGAGGAAAGTGTATCTGGC 58.791 50.000 0.00 0.00 0.00 4.85
3228 4662 1.134068 GGAGGAAAGTGTATCTGGCCC 60.134 57.143 0.00 0.00 0.00 5.80
3283 4717 6.616774 AACACAAGGCAAATTGGTTTATTG 57.383 33.333 0.00 0.00 34.36 1.90
3352 4813 6.739331 AGTACCTTCATTATCTCCCTTCAG 57.261 41.667 0.00 0.00 0.00 3.02
3357 4818 8.980832 ACCTTCATTATCTCCCTTCAGTATAT 57.019 34.615 0.00 0.00 0.00 0.86
3366 4827 4.890988 TCCCTTCAGTATATCACCCTTGA 58.109 43.478 0.00 0.00 35.73 3.02
3372 4834 5.631119 TCAGTATATCACCCTTGATCTCGA 58.369 41.667 0.00 0.00 41.87 4.04
3375 4837 7.233553 TCAGTATATCACCCTTGATCTCGATTT 59.766 37.037 0.00 0.00 41.87 2.17
3384 4846 5.238214 CCCTTGATCTCGATTTCTTGGAATC 59.762 44.000 0.00 0.00 33.64 2.52
3405 4867 2.184836 CATGGCCATTTGCACCGG 59.815 61.111 17.92 0.00 43.89 5.28
3461 4923 3.370953 GGGTGGATTGCTTCTGATACACT 60.371 47.826 0.00 0.00 37.29 3.55
3462 4924 4.141711 GGGTGGATTGCTTCTGATACACTA 60.142 45.833 0.00 0.00 37.29 2.74
3463 4925 4.811557 GGTGGATTGCTTCTGATACACTAC 59.188 45.833 0.00 0.00 37.29 2.73
3464 4926 5.419542 GTGGATTGCTTCTGATACACTACA 58.580 41.667 0.00 0.00 34.85 2.74
3465 4927 5.292101 GTGGATTGCTTCTGATACACTACAC 59.708 44.000 0.00 0.00 34.85 2.90
3466 4928 4.811557 GGATTGCTTCTGATACACTACACC 59.188 45.833 0.00 0.00 0.00 4.16
3468 4930 5.483685 TTGCTTCTGATACACTACACCTT 57.516 39.130 0.00 0.00 0.00 3.50
3470 4932 5.865085 TGCTTCTGATACACTACACCTTTT 58.135 37.500 0.00 0.00 0.00 2.27
3471 4933 6.296026 TGCTTCTGATACACTACACCTTTTT 58.704 36.000 0.00 0.00 0.00 1.94
3472 4934 6.204688 TGCTTCTGATACACTACACCTTTTTG 59.795 38.462 0.00 0.00 0.00 2.44
3473 4935 6.426937 GCTTCTGATACACTACACCTTTTTGA 59.573 38.462 0.00 0.00 0.00 2.69
3474 4936 7.119846 GCTTCTGATACACTACACCTTTTTGAT 59.880 37.037 0.00 0.00 0.00 2.57
3475 4937 7.905604 TCTGATACACTACACCTTTTTGATG 57.094 36.000 0.00 0.00 0.00 3.07
3484 4946 7.393234 CACTACACCTTTTTGATGGGAGATAAA 59.607 37.037 0.00 0.00 0.00 1.40
3486 4948 5.183140 ACACCTTTTTGATGGGAGATAAACG 59.817 40.000 0.00 0.00 0.00 3.60
3562 5024 7.110155 ACTGAATTTCGGATTGTGGTACTAAT 58.890 34.615 12.18 0.00 0.00 1.73
3578 5040 7.499232 GTGGTACTAATAGAATGCCACTTCAAT 59.501 37.037 9.72 0.00 40.99 2.57
3592 5054 7.946207 TGCCACTTCAATTGTAAAAACAGATA 58.054 30.769 5.13 0.00 0.00 1.98
3783 5245 3.149196 TGGTGATTTCCTTGTCTTGCTC 58.851 45.455 0.00 0.00 0.00 4.26
3821 5284 2.806608 TGACGAGTTTCTAACGCCTT 57.193 45.000 0.00 0.00 36.23 4.35
3822 5285 2.400399 TGACGAGTTTCTAACGCCTTG 58.600 47.619 0.00 0.00 36.23 3.61
3943 5406 5.279809 GGATGTTCGCCCTATATTCTGGTAA 60.280 44.000 0.00 0.00 0.00 2.85
3944 5407 5.617528 TGTTCGCCCTATATTCTGGTAAA 57.382 39.130 0.00 0.00 0.00 2.01
4181 5644 8.609176 TGTCTTGTTGTTTGAGTCTACAATAAC 58.391 33.333 12.44 8.13 36.72 1.89
4207 5670 2.166050 TGCACAACAGTTTTGCACAGAT 59.834 40.909 20.84 0.00 41.29 2.90
4212 5675 3.904136 ACAGTTTTGCACAGATACTGC 57.096 42.857 7.21 0.00 39.77 4.40
4248 5711 9.605275 CTTCATAACACTCTAAATCCAGAATCA 57.395 33.333 0.00 0.00 0.00 2.57
4521 5984 7.094377 GGCTATTCACTGTTTCAAAGATTACCA 60.094 37.037 0.00 0.00 0.00 3.25
4522 5985 8.462016 GCTATTCACTGTTTCAAAGATTACCAT 58.538 33.333 0.00 0.00 0.00 3.55
4724 6210 9.526713 CATGATAGTAATACTCTGTATGCCATC 57.473 37.037 0.00 0.00 0.00 3.51
4758 6245 6.815089 TCAAGGTGTCAATGTTTTTGCTAAT 58.185 32.000 0.00 0.00 0.00 1.73
4939 6432 4.970662 TGCTGTAAATGCAGAGAAATCC 57.029 40.909 2.50 0.00 38.70 3.01
4969 6463 4.625742 CCTAGTGTTGGTACGTCAAATCTG 59.374 45.833 0.00 0.00 0.00 2.90
5032 6572 6.944862 GGGAAGGTTTAGGTAGAGACGATATA 59.055 42.308 0.00 0.00 0.00 0.86
5064 7034 9.869757 ACATAAATAAAACCTTACAATCCTTGC 57.130 29.630 0.00 0.00 0.00 4.01
5124 7094 2.125147 TGCCGCTCTGTATGGTGC 60.125 61.111 0.00 0.00 0.00 5.01
5160 7131 6.715347 ACCTGCTTTATTTCTGTTCTGTTT 57.285 33.333 0.00 0.00 0.00 2.83
5209 7180 2.369532 TGTTTACCAGAAGGCCTACGTT 59.630 45.455 5.16 0.00 39.06 3.99
5248 7219 0.407139 AGAAGCTGGGCCAACTCATT 59.593 50.000 10.40 0.00 0.00 2.57
5284 7255 2.832643 TCCCTTCCCTCACGTACATA 57.167 50.000 0.00 0.00 0.00 2.29
5287 7258 2.032620 CCTTCCCTCACGTACATAGCT 58.967 52.381 0.00 0.00 0.00 3.32
5489 7460 1.524482 GGTGACTCATCCAGGGAGC 59.476 63.158 0.00 0.00 35.79 4.70
5602 7575 6.927381 GCATTTAGCTATACTCCTTCCGTTTA 59.073 38.462 0.00 0.00 41.15 2.01
5645 7619 8.234136 AGAGATTTCAATACGGACTACATACA 57.766 34.615 0.00 0.00 0.00 2.29
5646 7620 8.353684 AGAGATTTCAATACGGACTACATACAG 58.646 37.037 0.00 0.00 0.00 2.74
5658 7632 9.381033 ACGGACTACATACAGATGTATATAGAC 57.619 37.037 19.96 15.03 45.42 2.59
5659 7633 8.541312 CGGACTACATACAGATGTATATAGACG 58.459 40.741 19.96 18.27 45.42 4.18
5660 7634 9.381033 GGACTACATACAGATGTATATAGACGT 57.619 37.037 19.96 9.73 45.42 4.34
5692 7666 7.667575 AGTGTAGATTCACTCAGTCCATATT 57.332 36.000 0.00 0.00 44.07 1.28
5693 7667 7.495901 AGTGTAGATTCACTCAGTCCATATTG 58.504 38.462 0.00 0.00 44.07 1.90
5694 7668 6.703607 GTGTAGATTCACTCAGTCCATATTGG 59.296 42.308 0.00 0.00 35.77 3.16
5695 7669 6.611236 TGTAGATTCACTCAGTCCATATTGGA 59.389 38.462 0.00 0.00 45.98 3.53
5709 7683 6.306987 TCCATATTGGAATCTCTAAAAGGGC 58.693 40.000 0.00 0.00 45.00 5.19
5710 7684 6.103205 TCCATATTGGAATCTCTAAAAGGGCT 59.897 38.462 0.00 0.00 45.00 5.19
5711 7685 6.779539 CCATATTGGAATCTCTAAAAGGGCTT 59.220 38.462 0.00 0.00 40.96 4.35
5712 7686 7.944554 CCATATTGGAATCTCTAAAAGGGCTTA 59.055 37.037 0.00 0.00 40.96 3.09
5713 7687 9.525826 CATATTGGAATCTCTAAAAGGGCTTAT 57.474 33.333 0.00 0.00 0.00 1.73
5717 7691 9.936329 TTGGAATCTCTAAAAGGGCTTATATTT 57.064 29.630 0.00 0.00 0.00 1.40
5725 7699 9.807921 TCTAAAAGGGCTTATATTTAGGAATGG 57.192 33.333 0.00 0.00 36.48 3.16
5726 7700 9.807921 CTAAAAGGGCTTATATTTAGGAATGGA 57.192 33.333 0.00 0.00 33.69 3.41
5727 7701 8.712228 AAAAGGGCTTATATTTAGGAATGGAG 57.288 34.615 0.00 0.00 0.00 3.86
5728 7702 6.394345 AGGGCTTATATTTAGGAATGGAGG 57.606 41.667 0.00 0.00 0.00 4.30
5729 7703 5.254032 AGGGCTTATATTTAGGAATGGAGGG 59.746 44.000 0.00 0.00 0.00 4.30
5730 7704 5.253096 GGGCTTATATTTAGGAATGGAGGGA 59.747 44.000 0.00 0.00 0.00 4.20
5731 7705 6.418946 GGCTTATATTTAGGAATGGAGGGAG 58.581 44.000 0.00 0.00 0.00 4.30
5732 7706 6.012421 GGCTTATATTTAGGAATGGAGGGAGT 60.012 42.308 0.00 0.00 0.00 3.85
5733 7707 7.182206 GGCTTATATTTAGGAATGGAGGGAGTA 59.818 40.741 0.00 0.00 0.00 2.59
5734 7708 8.261522 GCTTATATTTAGGAATGGAGGGAGTAG 58.738 40.741 0.00 0.00 0.00 2.57
5735 7709 9.327731 CTTATATTTAGGAATGGAGGGAGTAGT 57.672 37.037 0.00 0.00 0.00 2.73
5962 7948 6.385033 ACTTCTGAAATGCTGCAAAGATAAC 58.615 36.000 6.36 0.00 0.00 1.89
6159 8149 2.617274 GCTGTGTTTGACCGCCCTC 61.617 63.158 0.00 0.00 0.00 4.30
6230 8220 8.506168 TCCAAACCACTCAATATGAATAAGAC 57.494 34.615 0.00 0.00 0.00 3.01
6269 8262 0.600557 CTTCGTGTGCAGTCTCTCCT 59.399 55.000 0.00 0.00 0.00 3.69
6427 8420 5.010516 CGAGAACCACTCATCTATGAAGGAT 59.989 44.000 14.65 6.05 45.14 3.24
6430 8423 4.712476 ACCACTCATCTATGAAGGATTGC 58.288 43.478 14.65 0.00 36.26 3.56
6431 8424 3.744942 CCACTCATCTATGAAGGATTGCG 59.255 47.826 5.56 0.00 36.18 4.85
6432 8425 3.744942 CACTCATCTATGAAGGATTGCGG 59.255 47.826 0.00 0.00 36.18 5.69
6433 8426 2.740981 CTCATCTATGAAGGATTGCGGC 59.259 50.000 0.00 0.00 36.18 6.53
6434 8427 1.808945 CATCTATGAAGGATTGCGGCC 59.191 52.381 0.00 0.00 0.00 6.13
6435 8428 0.836606 TCTATGAAGGATTGCGGCCA 59.163 50.000 2.24 0.00 0.00 5.36
6436 8429 1.421268 TCTATGAAGGATTGCGGCCAT 59.579 47.619 2.24 0.00 0.00 4.40
6437 8430 1.808945 CTATGAAGGATTGCGGCCATC 59.191 52.381 2.24 5.53 0.00 3.51
6438 8431 0.184451 ATGAAGGATTGCGGCCATCT 59.816 50.000 13.03 0.00 0.00 2.90
6439 8432 0.034186 TGAAGGATTGCGGCCATCTT 60.034 50.000 13.03 3.57 0.00 2.40
6440 8433 1.106285 GAAGGATTGCGGCCATCTTT 58.894 50.000 10.54 10.54 0.00 2.52
6441 8434 1.478105 GAAGGATTGCGGCCATCTTTT 59.522 47.619 11.75 8.02 0.00 2.27
6442 8435 0.819582 AGGATTGCGGCCATCTTTTG 59.180 50.000 13.03 0.00 0.00 2.44
6443 8436 0.532115 GGATTGCGGCCATCTTTTGT 59.468 50.000 13.03 0.00 0.00 2.83
6444 8437 1.632422 GATTGCGGCCATCTTTTGTG 58.368 50.000 2.24 0.00 0.00 3.33
6445 8438 0.968405 ATTGCGGCCATCTTTTGTGT 59.032 45.000 2.24 0.00 0.00 3.72
6446 8439 1.610363 TTGCGGCCATCTTTTGTGTA 58.390 45.000 2.24 0.00 0.00 2.90
6447 8440 0.878416 TGCGGCCATCTTTTGTGTAC 59.122 50.000 2.24 0.00 0.00 2.90
6448 8441 1.165270 GCGGCCATCTTTTGTGTACT 58.835 50.000 2.24 0.00 0.00 2.73
6449 8442 1.135689 GCGGCCATCTTTTGTGTACTG 60.136 52.381 2.24 0.00 0.00 2.74
6450 8443 1.468520 CGGCCATCTTTTGTGTACTGG 59.531 52.381 2.24 0.00 0.00 4.00
6451 8444 2.790433 GGCCATCTTTTGTGTACTGGA 58.210 47.619 0.00 0.00 0.00 3.86
6452 8445 2.488153 GGCCATCTTTTGTGTACTGGAC 59.512 50.000 0.00 0.00 0.00 4.02
6453 8446 3.146066 GCCATCTTTTGTGTACTGGACA 58.854 45.455 0.00 0.00 34.94 4.02
6454 8447 3.568007 GCCATCTTTTGTGTACTGGACAA 59.432 43.478 0.00 0.00 40.66 3.18
6455 8448 4.037446 GCCATCTTTTGTGTACTGGACAAA 59.963 41.667 0.00 6.02 40.66 2.83
6456 8449 5.451242 GCCATCTTTTGTGTACTGGACAAAA 60.451 40.000 17.07 17.07 46.16 2.44
6457 8450 5.977129 CCATCTTTTGTGTACTGGACAAAAC 59.023 40.000 15.11 0.00 44.46 2.43
6458 8451 6.405286 CCATCTTTTGTGTACTGGACAAAACA 60.405 38.462 15.11 8.70 44.46 2.83
6459 8452 6.576662 TCTTTTGTGTACTGGACAAAACAA 57.423 33.333 15.11 3.54 44.46 2.83
6460 8453 6.982852 TCTTTTGTGTACTGGACAAAACAAA 58.017 32.000 15.11 8.56 44.46 2.83
6461 8454 6.864165 TCTTTTGTGTACTGGACAAAACAAAC 59.136 34.615 15.11 0.00 44.46 2.93
6462 8455 5.707242 TTGTGTACTGGACAAAACAAACA 57.293 34.783 0.00 0.00 40.66 2.83
6463 8456 5.049398 TGTGTACTGGACAAAACAAACAC 57.951 39.130 0.00 0.00 40.66 3.32
6464 8457 4.092816 GTGTACTGGACAAAACAAACACG 58.907 43.478 0.00 0.00 40.66 4.49
6465 8458 2.931512 ACTGGACAAAACAAACACGG 57.068 45.000 0.00 0.00 0.00 4.94
6466 8459 1.474879 ACTGGACAAAACAAACACGGG 59.525 47.619 0.00 0.00 0.00 5.28
6803 8838 1.283321 GAGGCTCAATCCCCTTTCTGT 59.717 52.381 10.25 0.00 0.00 3.41
6918 8953 2.222886 GGTCTATAGCAGCGTCTCTCA 58.777 52.381 0.00 0.00 0.00 3.27
7043 9078 1.741770 GGCTCGTCTTCGCAATGGT 60.742 57.895 0.00 0.00 36.96 3.55
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 1.136305 AGCACATTGATCTTGGCATGC 59.864 47.619 9.90 9.90 0.00 4.06
50 51 4.989797 TCATTGTAGCAAAGCCAAAACATG 59.010 37.500 0.00 0.00 0.00 3.21
51 52 5.010922 TCTCATTGTAGCAAAGCCAAAACAT 59.989 36.000 0.00 0.00 0.00 2.71
96 97 1.424638 ATTATGGGACGGAGGGAGTG 58.575 55.000 0.00 0.00 0.00 3.51
101 102 4.142227 CGGTCTTATATTATGGGACGGAGG 60.142 50.000 10.17 0.00 31.84 4.30
102 103 4.703575 TCGGTCTTATATTATGGGACGGAG 59.296 45.833 12.46 5.79 33.57 4.63
103 104 4.665451 TCGGTCTTATATTATGGGACGGA 58.335 43.478 12.46 12.46 35.18 4.69
104 105 4.677250 GCTCGGTCTTATATTATGGGACGG 60.677 50.000 0.00 0.00 0.00 4.79
105 106 4.158025 AGCTCGGTCTTATATTATGGGACG 59.842 45.833 0.00 0.00 0.00 4.79
109 110 5.237815 TGCAAGCTCGGTCTTATATTATGG 58.762 41.667 0.00 0.00 0.00 2.74
122 123 2.050477 AAATCGTTTTGCAAGCTCGG 57.950 45.000 15.79 0.98 0.00 4.63
127 128 8.238481 ACCATAATGTAAAATCGTTTTGCAAG 57.762 30.769 14.16 0.00 45.78 4.01
135 136 5.987347 CCTCCGTACCATAATGTAAAATCGT 59.013 40.000 0.00 0.00 0.00 3.73
144 145 4.527038 ACATACTCCCTCCGTACCATAATG 59.473 45.833 0.00 0.00 0.00 1.90
152 153 4.346730 TCAAGAAACATACTCCCTCCGTA 58.653 43.478 0.00 0.00 0.00 4.02
165 166 2.639347 TGGAGCTGGATCTCAAGAAACA 59.361 45.455 0.00 0.00 34.84 2.83
166 167 3.006247 GTGGAGCTGGATCTCAAGAAAC 58.994 50.000 0.00 0.00 34.84 2.78
221 455 6.183360 CCTCTTCTTGTCATCTTCTCCTCTAC 60.183 46.154 0.00 0.00 0.00 2.59
334 574 9.816354 TCCAAGAGAAAAACAAAGGAAAAATAG 57.184 29.630 0.00 0.00 0.00 1.73
336 576 9.685276 AATCCAAGAGAAAAACAAAGGAAAAAT 57.315 25.926 0.00 0.00 0.00 1.82
386 1591 2.748605 GACATTATCGGAGCACCAGAG 58.251 52.381 0.00 0.00 35.59 3.35
438 1762 6.778834 ATGTGATTGAATTGCCACTGAATA 57.221 33.333 0.00 0.00 0.00 1.75
496 1820 3.157881 TCCGGTGACAATTGCCAAAATA 58.842 40.909 5.05 0.00 0.00 1.40
497 1821 1.967066 TCCGGTGACAATTGCCAAAAT 59.033 42.857 5.05 0.00 0.00 1.82
498 1822 1.403814 TCCGGTGACAATTGCCAAAA 58.596 45.000 5.05 0.00 0.00 2.44
499 1823 1.543802 GATCCGGTGACAATTGCCAAA 59.456 47.619 5.05 0.00 0.00 3.28
500 1824 1.173043 GATCCGGTGACAATTGCCAA 58.827 50.000 5.05 0.00 0.00 4.52
507 1831 1.890876 CTTTGGTGATCCGGTGACAA 58.109 50.000 0.00 0.00 36.30 3.18
604 1928 9.379811 GAAGATTTTTCTATGCGATCTCATTTC 57.620 33.333 3.04 0.00 0.00 2.17
608 1932 6.258727 GGTGAAGATTTTTCTATGCGATCTCA 59.741 38.462 0.00 0.00 0.00 3.27
609 1933 6.563010 CGGTGAAGATTTTTCTATGCGATCTC 60.563 42.308 0.00 0.00 0.00 2.75
667 1998 0.613777 CCGGGTTTAGAAGTCTGGCT 59.386 55.000 0.00 0.00 0.00 4.75
674 2005 0.608035 TGCCAAGCCGGGTTTAGAAG 60.608 55.000 18.04 4.80 34.06 2.85
770 2110 4.736896 GACGGGTGCACGGAGGTC 62.737 72.222 11.45 11.09 38.39 3.85
777 2117 2.978010 CTTGTGGGACGGGTGCAC 60.978 66.667 8.80 8.80 0.00 4.57
991 2360 3.634448 TCGATCACCTTCATCTTCCTCTC 59.366 47.826 0.00 0.00 0.00 3.20
1137 2506 2.146342 CAGGTGATGTCGCAGAAGTTT 58.854 47.619 0.00 0.00 39.69 2.66
1231 2600 2.104530 GAGCGGTAGGAAGGCGAC 59.895 66.667 0.00 0.00 0.00 5.19
1232 2601 3.515286 CGAGCGGTAGGAAGGCGA 61.515 66.667 0.00 0.00 0.00 5.54
1234 2603 3.776659 GAGCGAGCGGTAGGAAGGC 62.777 68.421 0.00 0.00 0.00 4.35
1236 2605 2.024871 CGAGCGAGCGGTAGGAAG 59.975 66.667 0.00 0.00 0.00 3.46
1237 2606 4.189188 GCGAGCGAGCGGTAGGAA 62.189 66.667 4.54 0.00 0.00 3.36
1340 2728 0.463620 TCAAACCAGCCAAGCAAACC 59.536 50.000 0.00 0.00 0.00 3.27
1389 2777 1.831736 ACCCCCTCACGAATTACAGAG 59.168 52.381 0.00 0.00 0.00 3.35
1422 2811 4.101645 TCCAATCACCCTAAAACCGAAA 57.898 40.909 0.00 0.00 0.00 3.46
1432 2821 1.551883 GCAAGCAAATCCAATCACCCT 59.448 47.619 0.00 0.00 0.00 4.34
1435 2824 1.202114 TCCGCAAGCAAATCCAATCAC 59.798 47.619 0.00 0.00 0.00 3.06
1439 2828 1.135431 CGATTCCGCAAGCAAATCCAA 60.135 47.619 9.98 0.00 35.69 3.53
1440 2829 0.451383 CGATTCCGCAAGCAAATCCA 59.549 50.000 9.98 0.00 35.69 3.41
1452 2841 1.194896 GAGACGAAGCGACGATTCCG 61.195 60.000 19.21 15.90 42.50 4.30
1453 2842 1.194896 CGAGACGAAGCGACGATTCC 61.195 60.000 19.21 7.09 37.03 3.01
1458 2852 1.934956 CCATCGAGACGAAGCGACG 60.935 63.158 0.00 4.25 39.99 5.12
1472 2866 7.881775 AATTACTATTCCACCAAACTCCATC 57.118 36.000 0.00 0.00 0.00 3.51
1475 2869 8.803397 AACTAATTACTATTCCACCAAACTCC 57.197 34.615 0.00 0.00 0.00 3.85
1549 2943 7.485810 TCCATTTCATCATAAATCAGCTGTTG 58.514 34.615 14.67 5.44 0.00 3.33
1563 2957 3.699413 TGGCATCAGTTCCATTTCATCA 58.301 40.909 0.00 0.00 0.00 3.07
1579 2973 3.683847 GCAGATGAACTCCTACTTGGCAT 60.684 47.826 0.00 0.00 35.26 4.40
1638 3032 7.019774 TCAGCTAGCAAGTAAGCAATAATTG 57.980 36.000 18.83 0.07 41.38 2.32
1657 3051 7.609532 AGCAATAATTGTCTCTTAAACTCAGCT 59.390 33.333 0.00 0.00 0.00 4.24
1658 3052 7.756558 AGCAATAATTGTCTCTTAAACTCAGC 58.243 34.615 0.00 0.00 0.00 4.26
1698 3092 1.958288 ATAACACTCCCCTGCTCACT 58.042 50.000 0.00 0.00 0.00 3.41
1750 3158 5.019498 CGTTCCATAGTTTAAATGTGCGTC 58.981 41.667 0.00 0.00 0.00 5.19
1763 3171 0.031414 AGCCCCTACCGTTCCATAGT 60.031 55.000 0.00 0.00 0.00 2.12
1826 3234 4.440880 GAGTCAGAATGGATGAACTCAGG 58.559 47.826 0.00 0.00 36.16 3.86
1996 3404 1.250840 GCACATTTCCCTGTCCCCAC 61.251 60.000 0.00 0.00 0.00 4.61
2061 3469 7.773224 TCAAATGAGTGTCTTCTTCCAAACTTA 59.227 33.333 0.00 0.00 0.00 2.24
2145 3556 6.535963 AAGGAAGCCTCAGAATTAATTTGG 57.464 37.500 1.43 4.50 30.89 3.28
2176 3588 3.305539 GGCAGCAACACAAGAATCATTGA 60.306 43.478 0.00 0.00 34.20 2.57
2188 3600 5.745294 CAGACAATATTTATGGCAGCAACAC 59.255 40.000 0.00 0.00 0.00 3.32
2189 3601 5.163530 CCAGACAATATTTATGGCAGCAACA 60.164 40.000 0.00 0.00 0.00 3.33
2190 3602 5.067674 TCCAGACAATATTTATGGCAGCAAC 59.932 40.000 0.00 0.00 0.00 4.17
2323 3737 5.074115 ACATTTTGAATCCCGTTGGACTTA 58.926 37.500 0.00 0.00 45.58 2.24
2332 3746 2.161410 TGCGAGAACATTTTGAATCCCG 59.839 45.455 0.00 0.00 0.00 5.14
2386 3800 2.165437 TCCACCAGCAACTTGAACAAAC 59.835 45.455 0.00 0.00 0.00 2.93
2434 3848 7.234782 TCAATCTGTTGGAAGAAGTAAGAGGTA 59.765 37.037 0.00 0.00 35.99 3.08
2439 3853 8.103948 ACATTCAATCTGTTGGAAGAAGTAAG 57.896 34.615 0.00 0.00 35.99 2.34
2440 3854 9.567776 TTACATTCAATCTGTTGGAAGAAGTAA 57.432 29.630 0.00 0.00 35.99 2.24
2441 3855 9.739276 ATTACATTCAATCTGTTGGAAGAAGTA 57.261 29.630 0.00 0.00 35.99 2.24
2442 3856 8.517878 CATTACATTCAATCTGTTGGAAGAAGT 58.482 33.333 0.00 0.00 35.99 3.01
2468 3882 9.160496 CATGCCTCTCCAATATAATAAGACTTC 57.840 37.037 0.00 0.00 0.00 3.01
2540 3954 4.286808 TCAGGACTCAACATCTGAAATCCA 59.713 41.667 7.22 0.00 40.03 3.41
2769 4183 2.417515 GCTATATGCTTCCTCCGTAGCC 60.418 54.545 0.00 0.00 38.95 3.93
2870 4284 1.971357 CAACAGGGATAGCCGGATAGT 59.029 52.381 5.05 0.00 33.83 2.12
2874 4288 1.140852 CAATCAACAGGGATAGCCGGA 59.859 52.381 5.05 0.00 33.83 5.14
2876 4290 2.332063 ACAATCAACAGGGATAGCCG 57.668 50.000 0.00 0.00 33.83 5.52
2877 4291 3.891049 AGAACAATCAACAGGGATAGCC 58.109 45.455 0.00 0.00 0.00 3.93
2878 4292 4.336713 GGAAGAACAATCAACAGGGATAGC 59.663 45.833 0.00 0.00 0.00 2.97
2881 4295 3.564352 GGGGAAGAACAATCAACAGGGAT 60.564 47.826 0.00 0.00 0.00 3.85
2882 4296 2.225017 GGGGAAGAACAATCAACAGGGA 60.225 50.000 0.00 0.00 0.00 4.20
2883 4297 2.171003 GGGGAAGAACAATCAACAGGG 58.829 52.381 0.00 0.00 0.00 4.45
2884 4298 2.875296 TGGGGAAGAACAATCAACAGG 58.125 47.619 0.00 0.00 0.00 4.00
2886 4300 4.478203 TCATTGGGGAAGAACAATCAACA 58.522 39.130 0.00 0.00 35.26 3.33
2887 4301 5.047092 ACATCATTGGGGAAGAACAATCAAC 60.047 40.000 0.00 0.00 35.26 3.18
2889 4303 4.676109 ACATCATTGGGGAAGAACAATCA 58.324 39.130 0.00 0.00 35.26 2.57
2890 4304 6.152661 TGTTACATCATTGGGGAAGAACAATC 59.847 38.462 0.00 0.00 35.26 2.67
2891 4305 6.015918 TGTTACATCATTGGGGAAGAACAAT 58.984 36.000 0.00 0.00 37.78 2.71
2893 4307 4.991776 TGTTACATCATTGGGGAAGAACA 58.008 39.130 0.00 0.00 0.00 3.18
2895 4309 5.579047 ACATGTTACATCATTGGGGAAGAA 58.421 37.500 0.00 0.00 0.00 2.52
2903 4337 5.978919 GGGTATGCAACATGTTACATCATTG 59.021 40.000 24.29 6.55 29.99 2.82
2915 4349 6.001449 ACAAGTACATAGGGTATGCAACAT 57.999 37.500 0.00 0.00 39.79 2.71
2958 4392 3.064900 AGGTTGAGAATGAAGCTGACC 57.935 47.619 0.00 0.00 38.95 4.02
2984 4418 1.612462 CCAGCATCAACCTGCAGAGAA 60.612 52.381 17.39 0.00 44.77 2.87
3180 4614 5.422012 TCATTACTTGTGATGGAGCTACAGA 59.578 40.000 4.19 0.00 0.00 3.41
3211 4645 0.252197 ACGGGCCAGATACACTTTCC 59.748 55.000 10.86 0.00 0.00 3.13
3283 4717 9.462606 CCCTCCTGTAATTTTATATAATGACCC 57.537 37.037 0.00 0.00 0.00 4.46
3327 4762 7.507616 ACTGAAGGGAGATAATGAAGGTACTAG 59.492 40.741 0.00 0.00 38.49 2.57
3352 4813 7.607250 AGAAATCGAGATCAAGGGTGATATAC 58.393 38.462 0.00 0.00 44.83 1.47
3357 4818 4.507710 CAAGAAATCGAGATCAAGGGTGA 58.492 43.478 0.00 0.00 38.41 4.02
3384 4846 0.108041 GGTGCAAATGGCCATGGAAG 60.108 55.000 21.63 10.68 43.89 3.46
3405 4867 4.711355 TCCCATGAATCCCAGTTCAAAATC 59.289 41.667 0.00 0.00 41.09 2.17
3461 4923 6.373216 CGTTTATCTCCCATCAAAAAGGTGTA 59.627 38.462 0.00 0.00 0.00 2.90
3462 4924 5.183140 CGTTTATCTCCCATCAAAAAGGTGT 59.817 40.000 0.00 0.00 0.00 4.16
3463 4925 5.414454 TCGTTTATCTCCCATCAAAAAGGTG 59.586 40.000 0.00 0.00 0.00 4.00
3464 4926 5.566469 TCGTTTATCTCCCATCAAAAAGGT 58.434 37.500 0.00 0.00 0.00 3.50
3465 4927 6.072175 TGTTCGTTTATCTCCCATCAAAAAGG 60.072 38.462 0.00 0.00 0.00 3.11
3466 4928 6.908825 TGTTCGTTTATCTCCCATCAAAAAG 58.091 36.000 0.00 0.00 0.00 2.27
3468 4930 6.885952 TTGTTCGTTTATCTCCCATCAAAA 57.114 33.333 0.00 0.00 0.00 2.44
3470 4932 5.765677 TGTTTGTTCGTTTATCTCCCATCAA 59.234 36.000 0.00 0.00 0.00 2.57
3471 4933 5.309638 TGTTTGTTCGTTTATCTCCCATCA 58.690 37.500 0.00 0.00 0.00 3.07
3472 4934 5.873179 TGTTTGTTCGTTTATCTCCCATC 57.127 39.130 0.00 0.00 0.00 3.51
3473 4935 5.064707 CGATGTTTGTTCGTTTATCTCCCAT 59.935 40.000 0.00 0.00 32.08 4.00
3474 4936 4.390603 CGATGTTTGTTCGTTTATCTCCCA 59.609 41.667 0.00 0.00 32.08 4.37
3475 4937 4.628333 TCGATGTTTGTTCGTTTATCTCCC 59.372 41.667 0.00 0.00 37.82 4.30
3562 5024 8.417106 TGTTTTTACAATTGAAGTGGCATTCTA 58.583 29.630 13.59 0.00 0.00 2.10
3578 5040 6.530120 TCTCAGCTGGTATCTGTTTTTACAA 58.470 36.000 15.13 0.00 33.48 2.41
3661 5123 2.028112 GCACATCTCAGTACCAAGGTGA 60.028 50.000 11.30 0.00 0.00 4.02
3801 5264 2.798283 CAAGGCGTTAGAAACTCGTCAA 59.202 45.455 0.00 0.00 0.00 3.18
3806 5269 5.419760 AAAAGTCAAGGCGTTAGAAACTC 57.580 39.130 0.00 0.00 0.00 3.01
4181 5644 2.050691 GCAAAACTGTTGTGCATACCG 58.949 47.619 26.52 0.00 38.19 4.02
4207 5670 5.647225 TGTTATGAAGATGTTGCATGCAGTA 59.353 36.000 21.50 14.15 0.00 2.74
4212 5675 6.432607 AGAGTGTTATGAAGATGTTGCATG 57.567 37.500 0.00 0.00 0.00 4.06
4278 5741 8.644216 TGGAAGACAAAGTCTACAAGTTGTATA 58.356 33.333 15.91 6.60 42.59 1.47
4279 5742 7.506114 TGGAAGACAAAGTCTACAAGTTGTAT 58.494 34.615 15.91 0.00 42.59 2.29
4280 5743 6.880484 TGGAAGACAAAGTCTACAAGTTGTA 58.120 36.000 14.85 14.85 42.59 2.41
4281 5744 5.741011 TGGAAGACAAAGTCTACAAGTTGT 58.259 37.500 14.05 14.05 42.59 3.32
4282 5745 6.049149 TCTGGAAGACAAAGTCTACAAGTTG 58.951 40.000 0.00 0.00 42.59 3.16
4284 5747 5.871396 TCTGGAAGACAAAGTCTACAAGT 57.129 39.130 0.00 0.00 42.59 3.16
4351 5814 5.783111 ACCAATATTTTCTGCTGAACCAAC 58.217 37.500 5.41 0.00 31.02 3.77
4521 5984 3.739401 AAAAGCAGGCCCACTACTAAT 57.261 42.857 0.00 0.00 0.00 1.73
4522 5985 3.518992 AAAAAGCAGGCCCACTACTAA 57.481 42.857 0.00 0.00 0.00 2.24
4724 6210 5.816777 ACATTGACACCTTGAAATTGTTTGG 59.183 36.000 0.00 0.00 0.00 3.28
4758 6245 0.895530 CTGTAGGTGAGAAAGGCGGA 59.104 55.000 0.00 0.00 0.00 5.54
4846 6333 4.034742 TGATCGTCAATTATCGTCGTCTCA 59.965 41.667 0.00 0.00 0.00 3.27
4939 6432 2.095532 CGTACCAACACTAGGAGACTCG 59.904 54.545 0.00 0.00 43.67 4.18
5064 7034 8.252964 AGGATGTAAAGAAAGCGTTACTAAAG 57.747 34.615 0.00 0.00 38.99 1.85
5124 7094 0.889186 AGCAGGTTTGGTAAGGCACG 60.889 55.000 0.00 0.00 32.18 5.34
5248 7219 1.340405 GGGAATGCCTTGCTCTTCTCA 60.340 52.381 0.00 0.00 0.00 3.27
5284 7255 0.111253 CCCCTTCCTTGTTCACAGCT 59.889 55.000 0.00 0.00 0.00 4.24
5287 7258 2.552155 CGATTCCCCTTCCTTGTTCACA 60.552 50.000 0.00 0.00 0.00 3.58
5467 7438 1.341156 CCCTGGATGAGTCACCCTCC 61.341 65.000 4.78 4.64 39.65 4.30
5473 7444 1.620739 GCAGCTCCCTGGATGAGTCA 61.621 60.000 0.00 0.00 39.54 3.41
5588 7561 9.933723 GGCTTATATTTATAAACGGAAGGAGTA 57.066 33.333 0.00 0.00 0.00 2.59
5589 7562 8.657712 AGGCTTATATTTATAAACGGAAGGAGT 58.342 33.333 0.00 0.00 0.00 3.85
5590 7563 9.503399 AAGGCTTATATTTATAAACGGAAGGAG 57.497 33.333 0.00 0.00 0.00 3.69
5591 7564 9.856162 AAAGGCTTATATTTATAAACGGAAGGA 57.144 29.630 0.00 0.00 0.00 3.36
5668 7642 7.418368 CCAATATGGACTGAGTGAATCTACACT 60.418 40.741 0.00 0.00 46.00 3.55
5669 7643 6.703607 CCAATATGGACTGAGTGAATCTACAC 59.296 42.308 0.00 0.00 40.96 2.90
5670 7644 6.611236 TCCAATATGGACTGAGTGAATCTACA 59.389 38.462 0.00 0.00 42.67 2.74
5671 7645 7.055667 TCCAATATGGACTGAGTGAATCTAC 57.944 40.000 0.00 0.00 42.67 2.59
5685 7659 6.103205 AGCCCTTTTAGAGATTCCAATATGGA 59.897 38.462 0.00 0.00 46.61 3.41
5686 7660 6.310149 AGCCCTTTTAGAGATTCCAATATGG 58.690 40.000 0.00 0.00 39.43 2.74
5687 7661 7.830099 AAGCCCTTTTAGAGATTCCAATATG 57.170 36.000 0.00 0.00 0.00 1.78
5691 7665 9.936329 AAATATAAGCCCTTTTAGAGATTCCAA 57.064 29.630 0.00 0.00 0.00 3.53
5699 7673 9.807921 CCATTCCTAAATATAAGCCCTTTTAGA 57.192 33.333 0.00 0.00 34.90 2.10
5700 7674 9.807921 TCCATTCCTAAATATAAGCCCTTTTAG 57.192 33.333 0.00 0.00 33.47 1.85
5701 7675 9.807921 CTCCATTCCTAAATATAAGCCCTTTTA 57.192 33.333 0.00 0.00 0.00 1.52
5702 7676 7.730332 CCTCCATTCCTAAATATAAGCCCTTTT 59.270 37.037 0.00 0.00 0.00 2.27
5703 7677 7.241628 CCTCCATTCCTAAATATAAGCCCTTT 58.758 38.462 0.00 0.00 0.00 3.11
5704 7678 6.240586 CCCTCCATTCCTAAATATAAGCCCTT 60.241 42.308 0.00 0.00 0.00 3.95
5705 7679 5.254032 CCCTCCATTCCTAAATATAAGCCCT 59.746 44.000 0.00 0.00 0.00 5.19
5706 7680 5.253096 TCCCTCCATTCCTAAATATAAGCCC 59.747 44.000 0.00 0.00 0.00 5.19
5707 7681 6.012421 ACTCCCTCCATTCCTAAATATAAGCC 60.012 42.308 0.00 0.00 0.00 4.35
5708 7682 7.021998 ACTCCCTCCATTCCTAAATATAAGC 57.978 40.000 0.00 0.00 0.00 3.09
5709 7683 9.327731 ACTACTCCCTCCATTCCTAAATATAAG 57.672 37.037 0.00 0.00 0.00 1.73
5710 7684 9.684702 AACTACTCCCTCCATTCCTAAATATAA 57.315 33.333 0.00 0.00 0.00 0.98
5712 7686 9.102453 GTAACTACTCCCTCCATTCCTAAATAT 57.898 37.037 0.00 0.00 0.00 1.28
5713 7687 8.069356 TGTAACTACTCCCTCCATTCCTAAATA 58.931 37.037 0.00 0.00 0.00 1.40
5714 7688 6.906901 TGTAACTACTCCCTCCATTCCTAAAT 59.093 38.462 0.00 0.00 0.00 1.40
5715 7689 6.266080 TGTAACTACTCCCTCCATTCCTAAA 58.734 40.000 0.00 0.00 0.00 1.85
5716 7690 5.845734 TGTAACTACTCCCTCCATTCCTAA 58.154 41.667 0.00 0.00 0.00 2.69
5717 7691 5.476950 TGTAACTACTCCCTCCATTCCTA 57.523 43.478 0.00 0.00 0.00 2.94
5718 7692 4.348020 TGTAACTACTCCCTCCATTCCT 57.652 45.455 0.00 0.00 0.00 3.36
5719 7693 4.470304 ACTTGTAACTACTCCCTCCATTCC 59.530 45.833 0.00 0.00 0.00 3.01
5720 7694 5.422650 AGACTTGTAACTACTCCCTCCATTC 59.577 44.000 0.00 0.00 0.00 2.67
5721 7695 5.342866 AGACTTGTAACTACTCCCTCCATT 58.657 41.667 0.00 0.00 0.00 3.16
5722 7696 4.949121 AGACTTGTAACTACTCCCTCCAT 58.051 43.478 0.00 0.00 0.00 3.41
5723 7697 4.399483 AGACTTGTAACTACTCCCTCCA 57.601 45.455 0.00 0.00 0.00 3.86
5724 7698 4.771054 TCAAGACTTGTAACTACTCCCTCC 59.229 45.833 14.75 0.00 0.00 4.30
5725 7699 5.979288 TCAAGACTTGTAACTACTCCCTC 57.021 43.478 14.75 0.00 0.00 4.30
5726 7700 8.062536 AGATATCAAGACTTGTAACTACTCCCT 58.937 37.037 14.75 0.00 0.00 4.20
5727 7701 8.240267 AGATATCAAGACTTGTAACTACTCCC 57.760 38.462 14.75 0.00 0.00 4.30
5728 7702 8.354426 GGAGATATCAAGACTTGTAACTACTCC 58.646 40.741 14.75 18.45 0.00 3.85
5729 7703 8.354426 GGGAGATATCAAGACTTGTAACTACTC 58.646 40.741 14.75 14.67 0.00 2.59
5730 7704 7.839705 TGGGAGATATCAAGACTTGTAACTACT 59.160 37.037 14.75 8.16 0.00 2.57
5731 7705 8.008513 TGGGAGATATCAAGACTTGTAACTAC 57.991 38.462 14.75 10.55 0.00 2.73
5732 7706 7.201920 GCTGGGAGATATCAAGACTTGTAACTA 60.202 40.741 14.75 4.10 0.00 2.24
5733 7707 6.407525 GCTGGGAGATATCAAGACTTGTAACT 60.408 42.308 14.75 10.15 0.00 2.24
5734 7708 5.755861 GCTGGGAGATATCAAGACTTGTAAC 59.244 44.000 14.75 6.15 0.00 2.50
5735 7709 5.663106 AGCTGGGAGATATCAAGACTTGTAA 59.337 40.000 14.75 5.06 0.00 2.41
5791 7772 2.787994 AGCTGATTGTCTGAAAGGTGG 58.212 47.619 0.00 0.00 0.00 4.61
5962 7948 0.735978 TGCTTGCTGTGGTATCGACG 60.736 55.000 0.00 0.00 0.00 5.12
6159 8149 5.906113 ATCATATTACAGGACTCTAGCGG 57.094 43.478 0.00 0.00 0.00 5.52
6230 8220 7.527516 CACGAAGAAGTAACAAAGATCGAAAAG 59.472 37.037 0.00 0.00 33.61 2.27
6246 8236 1.683917 AGAGACTGCACACGAAGAAGT 59.316 47.619 0.00 0.00 0.00 3.01
6247 8237 2.323959 GAGAGACTGCACACGAAGAAG 58.676 52.381 0.00 0.00 0.00 2.85
6248 8238 1.000163 GGAGAGACTGCACACGAAGAA 60.000 52.381 0.00 0.00 0.00 2.52
6249 8239 0.598562 GGAGAGACTGCACACGAAGA 59.401 55.000 0.00 0.00 0.00 2.87
6269 8262 8.475639 CCTAGGTAACAAATAAGCTAGACAAGA 58.524 37.037 0.00 0.00 43.35 3.02
6427 8420 1.268352 GTACACAAAAGATGGCCGCAA 59.732 47.619 0.00 0.00 0.00 4.85
6430 8423 1.468520 CCAGTACACAAAAGATGGCCG 59.531 52.381 0.00 0.00 0.00 6.13
6431 8424 2.488153 GTCCAGTACACAAAAGATGGCC 59.512 50.000 0.00 0.00 0.00 5.36
6432 8425 3.146066 TGTCCAGTACACAAAAGATGGC 58.854 45.455 0.00 0.00 31.43 4.40
6433 8426 5.766150 TTTGTCCAGTACACAAAAGATGG 57.234 39.130 7.35 0.00 40.08 3.51
6438 8431 6.421202 GTGTTTGTTTTGTCCAGTACACAAAA 59.579 34.615 15.11 15.11 46.55 2.44
6439 8432 5.921408 GTGTTTGTTTTGTCCAGTACACAAA 59.079 36.000 6.02 6.02 41.05 2.83
6440 8433 5.462405 GTGTTTGTTTTGTCCAGTACACAA 58.538 37.500 0.00 0.00 38.00 3.33
6441 8434 4.378563 CGTGTTTGTTTTGTCCAGTACACA 60.379 41.667 0.00 0.00 38.00 3.72
6442 8435 4.092816 CGTGTTTGTTTTGTCCAGTACAC 58.907 43.478 0.00 0.00 38.00 2.90
6443 8436 3.127203 CCGTGTTTGTTTTGTCCAGTACA 59.873 43.478 0.00 0.00 35.88 2.90
6444 8437 3.487879 CCCGTGTTTGTTTTGTCCAGTAC 60.488 47.826 0.00 0.00 0.00 2.73
6445 8438 2.683867 CCCGTGTTTGTTTTGTCCAGTA 59.316 45.455 0.00 0.00 0.00 2.74
6446 8439 1.474879 CCCGTGTTTGTTTTGTCCAGT 59.525 47.619 0.00 0.00 0.00 4.00
6447 8440 1.746220 TCCCGTGTTTGTTTTGTCCAG 59.254 47.619 0.00 0.00 0.00 3.86
6448 8441 1.835494 TCCCGTGTTTGTTTTGTCCA 58.165 45.000 0.00 0.00 0.00 4.02
6449 8442 2.943449 TTCCCGTGTTTGTTTTGTCC 57.057 45.000 0.00 0.00 0.00 4.02
6450 8443 3.061563 GCTTTTCCCGTGTTTGTTTTGTC 59.938 43.478 0.00 0.00 0.00 3.18
6451 8444 2.997303 GCTTTTCCCGTGTTTGTTTTGT 59.003 40.909 0.00 0.00 0.00 2.83
6452 8445 2.350192 GGCTTTTCCCGTGTTTGTTTTG 59.650 45.455 0.00 0.00 0.00 2.44
6453 8446 2.028020 TGGCTTTTCCCGTGTTTGTTTT 60.028 40.909 0.00 0.00 0.00 2.43
6454 8447 1.550976 TGGCTTTTCCCGTGTTTGTTT 59.449 42.857 0.00 0.00 0.00 2.83
6455 8448 1.136110 CTGGCTTTTCCCGTGTTTGTT 59.864 47.619 0.00 0.00 0.00 2.83
6456 8449 0.744281 CTGGCTTTTCCCGTGTTTGT 59.256 50.000 0.00 0.00 0.00 2.83
6457 8450 0.597377 GCTGGCTTTTCCCGTGTTTG 60.597 55.000 0.00 0.00 0.00 2.93
6458 8451 1.739667 GCTGGCTTTTCCCGTGTTT 59.260 52.632 0.00 0.00 0.00 2.83
6459 8452 2.551912 CGCTGGCTTTTCCCGTGTT 61.552 57.895 0.00 0.00 0.00 3.32
6460 8453 2.978010 CGCTGGCTTTTCCCGTGT 60.978 61.111 0.00 0.00 0.00 4.49
6461 8454 4.404654 GCGCTGGCTTTTCCCGTG 62.405 66.667 0.00 0.00 35.83 4.94
6790 8825 1.586154 CGCGCAACAGAAAGGGGATT 61.586 55.000 8.75 0.00 0.00 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.