Multiple sequence alignment - TraesCS5D01G481200
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS5D01G481200 | chr5D | 100.000 | 2500 | 0 | 0 | 956 | 3455 | 519277079 | 519279578 | 0.000000e+00 | 4617.0 |
1 | TraesCS5D01G481200 | chr5D | 100.000 | 598 | 0 | 0 | 1 | 598 | 519276124 | 519276721 | 0.000000e+00 | 1105.0 |
2 | TraesCS5D01G481200 | chr5D | 92.821 | 195 | 13 | 1 | 1 | 194 | 342600306 | 342600500 | 7.300000e-72 | 281.0 |
3 | TraesCS5D01G481200 | chr5D | 92.784 | 194 | 11 | 2 | 5 | 195 | 535008471 | 535008278 | 9.440000e-71 | 278.0 |
4 | TraesCS5D01G481200 | chr5D | 97.436 | 78 | 2 | 0 | 3378 | 3455 | 510548713 | 510548790 | 2.160000e-27 | 134.0 |
5 | TraesCS5D01G481200 | chr5A | 88.969 | 2357 | 125 | 48 | 1100 | 3382 | 645726225 | 645728520 | 0.000000e+00 | 2787.0 |
6 | TraesCS5D01G481200 | chr5A | 87.137 | 241 | 20 | 7 | 253 | 483 | 645725464 | 645725703 | 2.640000e-66 | 263.0 |
7 | TraesCS5D01G481200 | chr5B | 92.506 | 1788 | 84 | 18 | 968 | 2732 | 653432364 | 653434124 | 0.000000e+00 | 2514.0 |
8 | TraesCS5D01G481200 | chr5B | 90.230 | 348 | 18 | 8 | 230 | 574 | 653431880 | 653432214 | 1.140000e-119 | 440.0 |
9 | TraesCS5D01G481200 | chr5B | 81.370 | 467 | 32 | 22 | 2771 | 3218 | 653435524 | 653435954 | 2.570000e-86 | 329.0 |
10 | TraesCS5D01G481200 | chr5B | 92.929 | 198 | 11 | 2 | 1 | 195 | 229081775 | 229081972 | 5.640000e-73 | 285.0 |
11 | TraesCS5D01G481200 | chr6D | 84.954 | 432 | 56 | 9 | 1137 | 1565 | 27820295 | 27819870 | 2.460000e-116 | 429.0 |
12 | TraesCS5D01G481200 | chr6D | 100.000 | 28 | 0 | 0 | 544 | 571 | 9348254 | 9348281 | 6.000000e-03 | 52.8 |
13 | TraesCS5D01G481200 | chr6B | 85.407 | 418 | 54 | 6 | 1137 | 1552 | 51580406 | 51579994 | 8.860000e-116 | 427.0 |
14 | TraesCS5D01G481200 | chr6B | 100.000 | 28 | 0 | 0 | 544 | 571 | 455898296 | 455898323 | 6.000000e-03 | 52.8 |
15 | TraesCS5D01G481200 | chr6B | 100.000 | 28 | 0 | 0 | 544 | 571 | 455898302 | 455898329 | 6.000000e-03 | 52.8 |
16 | TraesCS5D01G481200 | chr6B | 100.000 | 28 | 0 | 0 | 544 | 571 | 455898308 | 455898335 | 6.000000e-03 | 52.8 |
17 | TraesCS5D01G481200 | chr6A | 83.850 | 452 | 62 | 10 | 1106 | 1555 | 30191252 | 30190810 | 1.480000e-113 | 420.0 |
18 | TraesCS5D01G481200 | chr4A | 93.401 | 197 | 11 | 2 | 1 | 195 | 62309851 | 62309655 | 1.210000e-74 | 291.0 |
19 | TraesCS5D01G481200 | chr4A | 78.605 | 430 | 66 | 15 | 1160 | 1573 | 521919877 | 521919458 | 9.510000e-66 | 261.0 |
20 | TraesCS5D01G481200 | chr4A | 97.436 | 78 | 2 | 0 | 3378 | 3455 | 490152963 | 490152886 | 2.160000e-27 | 134.0 |
21 | TraesCS5D01G481200 | chr3D | 92.965 | 199 | 10 | 3 | 1 | 195 | 488121096 | 488120898 | 1.570000e-73 | 287.0 |
22 | TraesCS5D01G481200 | chr3D | 92.347 | 196 | 11 | 3 | 4 | 195 | 590751950 | 590751755 | 3.400000e-70 | 276.0 |
23 | TraesCS5D01G481200 | chr3D | 84.871 | 271 | 32 | 8 | 1325 | 1589 | 445037937 | 445037670 | 7.350000e-67 | 265.0 |
24 | TraesCS5D01G481200 | chr3D | 88.623 | 167 | 19 | 0 | 1135 | 1301 | 445038208 | 445038042 | 1.630000e-48 | 204.0 |
25 | TraesCS5D01G481200 | chr2D | 92.965 | 199 | 10 | 3 | 1 | 195 | 74970068 | 74969870 | 1.570000e-73 | 287.0 |
26 | TraesCS5D01G481200 | chr2D | 100.000 | 28 | 0 | 0 | 544 | 571 | 629535255 | 629535228 | 6.000000e-03 | 52.8 |
27 | TraesCS5D01G481200 | chr2A | 92.462 | 199 | 11 | 3 | 1 | 195 | 729555046 | 729555244 | 7.300000e-72 | 281.0 |
28 | TraesCS5D01G481200 | chr2A | 91.960 | 199 | 12 | 3 | 1 | 195 | 642587031 | 642586833 | 3.400000e-70 | 276.0 |
29 | TraesCS5D01G481200 | chr3B | 84.871 | 271 | 32 | 6 | 1325 | 1589 | 583392569 | 583392302 | 7.350000e-67 | 265.0 |
30 | TraesCS5D01G481200 | chr3B | 88.024 | 167 | 20 | 0 | 1135 | 1301 | 583392880 | 583392714 | 7.560000e-47 | 198.0 |
31 | TraesCS5D01G481200 | chr3A | 84.133 | 271 | 34 | 6 | 1325 | 1589 | 586422762 | 586422495 | 1.590000e-63 | 254.0 |
32 | TraesCS5D01G481200 | chr3A | 88.024 | 167 | 20 | 0 | 1135 | 1301 | 586423077 | 586422911 | 7.560000e-47 | 198.0 |
33 | TraesCS5D01G481200 | chr3A | 96.154 | 78 | 3 | 0 | 3378 | 3455 | 746838990 | 746839067 | 1.010000e-25 | 128.0 |
34 | TraesCS5D01G481200 | chr3A | 96.154 | 78 | 3 | 0 | 3378 | 3455 | 748076275 | 748076352 | 1.010000e-25 | 128.0 |
35 | TraesCS5D01G481200 | chrUn | 86.822 | 129 | 16 | 1 | 1138 | 1266 | 240676954 | 240677081 | 3.590000e-30 | 143.0 |
36 | TraesCS5D01G481200 | chr1A | 96.154 | 78 | 3 | 0 | 3378 | 3455 | 592540211 | 592540288 | 1.010000e-25 | 128.0 |
37 | TraesCS5D01G481200 | chr1B | 93.243 | 74 | 5 | 0 | 3382 | 3455 | 264859670 | 264859597 | 3.650000e-20 | 110.0 |
38 | TraesCS5D01G481200 | chr7D | 96.875 | 32 | 1 | 0 | 544 | 575 | 21414030 | 21413999 | 2.000000e-03 | 54.7 |
39 | TraesCS5D01G481200 | chr4D | 100.000 | 28 | 0 | 0 | 544 | 571 | 504115192 | 504115219 | 6.000000e-03 | 52.8 |
40 | TraesCS5D01G481200 | chr4D | 100.000 | 28 | 0 | 0 | 544 | 571 | 504115198 | 504115225 | 6.000000e-03 | 52.8 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS5D01G481200 | chr5D | 519276124 | 519279578 | 3454 | False | 2861.000000 | 4617 | 100.000000 | 1 | 3455 | 2 | chr5D.!!$F3 | 3454 |
1 | TraesCS5D01G481200 | chr5A | 645725464 | 645728520 | 3056 | False | 1525.000000 | 2787 | 88.053000 | 253 | 3382 | 2 | chr5A.!!$F1 | 3129 |
2 | TraesCS5D01G481200 | chr5B | 653431880 | 653435954 | 4074 | False | 1094.333333 | 2514 | 88.035333 | 230 | 3218 | 3 | chr5B.!!$F2 | 2988 |
3 | TraesCS5D01G481200 | chr3D | 445037670 | 445038208 | 538 | True | 234.500000 | 265 | 86.747000 | 1135 | 1589 | 2 | chr3D.!!$R3 | 454 |
4 | TraesCS5D01G481200 | chr3B | 583392302 | 583392880 | 578 | True | 231.500000 | 265 | 86.447500 | 1135 | 1589 | 2 | chr3B.!!$R1 | 454 |
5 | TraesCS5D01G481200 | chr3A | 586422495 | 586423077 | 582 | True | 226.000000 | 254 | 86.078500 | 1135 | 1589 | 2 | chr3A.!!$R1 | 454 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
89 | 90 | 0.035152 | TTGAAGATGACATGCCGGCT | 60.035 | 50.0 | 29.7 | 7.33 | 0.0 | 5.52 | F |
1048 | 1081 | 0.035152 | AGCCATCGGAATCAACAGCA | 60.035 | 50.0 | 0.0 | 0.00 | 0.0 | 4.41 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1091 | 1124 | 0.107897 | CCCCATGTCCGTTGAATCGA | 60.108 | 55.0 | 0.0 | 0.0 | 0.0 | 3.59 | R |
2838 | 4444 | 0.109342 | CCTGGCTTGTCACTGGTTCT | 59.891 | 55.0 | 0.0 | 0.0 | 0.0 | 3.01 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
17 | 18 | 2.787249 | CCGGCGATGTGCTTTCAG | 59.213 | 61.111 | 9.30 | 0.00 | 45.43 | 3.02 |
18 | 19 | 2.034879 | CCGGCGATGTGCTTTCAGT | 61.035 | 57.895 | 9.30 | 0.00 | 45.43 | 3.41 |
19 | 20 | 1.133253 | CGGCGATGTGCTTTCAGTG | 59.867 | 57.895 | 0.00 | 0.00 | 45.43 | 3.66 |
20 | 21 | 1.503542 | GGCGATGTGCTTTCAGTGG | 59.496 | 57.895 | 0.00 | 0.00 | 45.43 | 4.00 |
21 | 22 | 1.503542 | GCGATGTGCTTTCAGTGGG | 59.496 | 57.895 | 0.00 | 0.00 | 41.73 | 4.61 |
22 | 23 | 0.955428 | GCGATGTGCTTTCAGTGGGA | 60.955 | 55.000 | 0.00 | 0.00 | 41.73 | 4.37 |
23 | 24 | 1.081892 | CGATGTGCTTTCAGTGGGAG | 58.918 | 55.000 | 0.00 | 0.00 | 0.00 | 4.30 |
24 | 25 | 1.457346 | GATGTGCTTTCAGTGGGAGG | 58.543 | 55.000 | 0.00 | 0.00 | 0.00 | 4.30 |
25 | 26 | 1.003580 | GATGTGCTTTCAGTGGGAGGA | 59.996 | 52.381 | 0.00 | 0.00 | 0.00 | 3.71 |
26 | 27 | 0.397941 | TGTGCTTTCAGTGGGAGGAG | 59.602 | 55.000 | 0.00 | 0.00 | 0.00 | 3.69 |
27 | 28 | 0.687354 | GTGCTTTCAGTGGGAGGAGA | 59.313 | 55.000 | 0.00 | 0.00 | 0.00 | 3.71 |
28 | 29 | 0.687354 | TGCTTTCAGTGGGAGGAGAC | 59.313 | 55.000 | 0.00 | 0.00 | 0.00 | 3.36 |
29 | 30 | 0.390472 | GCTTTCAGTGGGAGGAGACG | 60.390 | 60.000 | 0.00 | 0.00 | 0.00 | 4.18 |
30 | 31 | 0.969894 | CTTTCAGTGGGAGGAGACGT | 59.030 | 55.000 | 0.00 | 0.00 | 0.00 | 4.34 |
31 | 32 | 1.344763 | CTTTCAGTGGGAGGAGACGTT | 59.655 | 52.381 | 0.00 | 0.00 | 0.00 | 3.99 |
32 | 33 | 0.966920 | TTCAGTGGGAGGAGACGTTC | 59.033 | 55.000 | 0.00 | 0.00 | 0.00 | 3.95 |
55 | 56 | 4.883300 | GACGACGAGGCGCCTACG | 62.883 | 72.222 | 32.91 | 32.91 | 44.07 | 3.51 |
58 | 59 | 4.849329 | GACGAGGCGCCTACGGTG | 62.849 | 72.222 | 34.97 | 23.88 | 40.57 | 4.94 |
60 | 61 | 4.849329 | CGAGGCGCCTACGGTGAC | 62.849 | 72.222 | 32.97 | 14.51 | 42.50 | 3.67 |
63 | 64 | 2.508663 | GGCGCCTACGGTGACTTC | 60.509 | 66.667 | 22.15 | 0.00 | 38.38 | 3.01 |
64 | 65 | 2.879462 | GCGCCTACGGTGACTTCG | 60.879 | 66.667 | 0.00 | 0.00 | 40.57 | 3.79 |
65 | 66 | 2.564975 | CGCCTACGGTGACTTCGT | 59.435 | 61.111 | 0.00 | 0.00 | 43.64 | 3.85 |
66 | 67 | 1.796151 | CGCCTACGGTGACTTCGTA | 59.204 | 57.895 | 0.00 | 0.00 | 41.38 | 3.43 |
67 | 68 | 0.168788 | CGCCTACGGTGACTTCGTAA | 59.831 | 55.000 | 0.00 | 0.00 | 41.62 | 3.18 |
68 | 69 | 1.401409 | CGCCTACGGTGACTTCGTAAA | 60.401 | 52.381 | 0.00 | 0.00 | 41.62 | 2.01 |
69 | 70 | 2.733227 | CGCCTACGGTGACTTCGTAAAT | 60.733 | 50.000 | 0.00 | 0.00 | 41.62 | 1.40 |
70 | 71 | 3.256558 | GCCTACGGTGACTTCGTAAATT | 58.743 | 45.455 | 0.00 | 0.00 | 41.62 | 1.82 |
71 | 72 | 3.681417 | GCCTACGGTGACTTCGTAAATTT | 59.319 | 43.478 | 0.00 | 0.00 | 41.62 | 1.82 |
72 | 73 | 4.435121 | GCCTACGGTGACTTCGTAAATTTG | 60.435 | 45.833 | 0.00 | 0.00 | 41.62 | 2.32 |
73 | 74 | 4.925054 | CCTACGGTGACTTCGTAAATTTGA | 59.075 | 41.667 | 0.00 | 0.00 | 41.62 | 2.69 |
74 | 75 | 5.406175 | CCTACGGTGACTTCGTAAATTTGAA | 59.594 | 40.000 | 0.00 | 0.00 | 41.62 | 2.69 |
75 | 76 | 5.338614 | ACGGTGACTTCGTAAATTTGAAG | 57.661 | 39.130 | 13.85 | 13.85 | 45.53 | 3.02 |
76 | 77 | 5.051816 | ACGGTGACTTCGTAAATTTGAAGA | 58.948 | 37.500 | 19.66 | 6.62 | 43.34 | 2.87 |
77 | 78 | 5.699458 | ACGGTGACTTCGTAAATTTGAAGAT | 59.301 | 36.000 | 19.66 | 8.35 | 43.34 | 2.40 |
78 | 79 | 6.015504 | CGGTGACTTCGTAAATTTGAAGATG | 58.984 | 40.000 | 19.66 | 11.87 | 43.34 | 2.90 |
79 | 80 | 6.128661 | CGGTGACTTCGTAAATTTGAAGATGA | 60.129 | 38.462 | 19.66 | 1.78 | 43.34 | 2.92 |
80 | 81 | 7.015877 | GGTGACTTCGTAAATTTGAAGATGAC | 58.984 | 38.462 | 19.66 | 13.44 | 43.34 | 3.06 |
81 | 82 | 7.307751 | GGTGACTTCGTAAATTTGAAGATGACA | 60.308 | 37.037 | 19.66 | 12.42 | 43.34 | 3.58 |
82 | 83 | 8.230486 | GTGACTTCGTAAATTTGAAGATGACAT | 58.770 | 33.333 | 19.66 | 0.00 | 43.34 | 3.06 |
83 | 84 | 8.229811 | TGACTTCGTAAATTTGAAGATGACATG | 58.770 | 33.333 | 19.66 | 0.00 | 43.34 | 3.21 |
84 | 85 | 7.023575 | ACTTCGTAAATTTGAAGATGACATGC | 58.976 | 34.615 | 19.66 | 0.00 | 43.34 | 4.06 |
85 | 86 | 5.879237 | TCGTAAATTTGAAGATGACATGCC | 58.121 | 37.500 | 0.00 | 0.00 | 0.00 | 4.40 |
86 | 87 | 4.730042 | CGTAAATTTGAAGATGACATGCCG | 59.270 | 41.667 | 0.00 | 0.00 | 0.00 | 5.69 |
87 | 88 | 3.788333 | AATTTGAAGATGACATGCCGG | 57.212 | 42.857 | 0.00 | 0.00 | 0.00 | 6.13 |
88 | 89 | 0.810648 | TTTGAAGATGACATGCCGGC | 59.189 | 50.000 | 22.73 | 22.73 | 0.00 | 6.13 |
89 | 90 | 0.035152 | TTGAAGATGACATGCCGGCT | 60.035 | 50.000 | 29.70 | 7.33 | 0.00 | 5.52 |
90 | 91 | 0.462581 | TGAAGATGACATGCCGGCTC | 60.463 | 55.000 | 29.70 | 17.89 | 0.00 | 4.70 |
91 | 92 | 0.462581 | GAAGATGACATGCCGGCTCA | 60.463 | 55.000 | 29.70 | 23.34 | 0.00 | 4.26 |
92 | 93 | 0.463295 | AAGATGACATGCCGGCTCAG | 60.463 | 55.000 | 29.70 | 19.20 | 0.00 | 3.35 |
93 | 94 | 2.515523 | ATGACATGCCGGCTCAGC | 60.516 | 61.111 | 29.70 | 15.07 | 0.00 | 4.26 |
94 | 95 | 4.783621 | TGACATGCCGGCTCAGCC | 62.784 | 66.667 | 29.70 | 5.22 | 46.75 | 4.85 |
103 | 104 | 2.124942 | GGCTCAGCCTTTCGGAGG | 60.125 | 66.667 | 9.09 | 1.83 | 46.69 | 4.30 |
111 | 112 | 3.558674 | CCTTTCGGAGGTGCTCATT | 57.441 | 52.632 | 0.00 | 0.00 | 40.95 | 2.57 |
112 | 113 | 1.089920 | CCTTTCGGAGGTGCTCATTG | 58.910 | 55.000 | 0.00 | 0.00 | 40.95 | 2.82 |
113 | 114 | 1.089920 | CTTTCGGAGGTGCTCATTGG | 58.910 | 55.000 | 0.00 | 0.00 | 31.08 | 3.16 |
114 | 115 | 0.690192 | TTTCGGAGGTGCTCATTGGA | 59.310 | 50.000 | 0.00 | 0.00 | 31.08 | 3.53 |
115 | 116 | 0.911769 | TTCGGAGGTGCTCATTGGAT | 59.088 | 50.000 | 0.00 | 0.00 | 31.08 | 3.41 |
116 | 117 | 1.788229 | TCGGAGGTGCTCATTGGATA | 58.212 | 50.000 | 0.00 | 0.00 | 31.08 | 2.59 |
117 | 118 | 1.688735 | TCGGAGGTGCTCATTGGATAG | 59.311 | 52.381 | 0.00 | 0.00 | 31.08 | 2.08 |
118 | 119 | 1.270518 | CGGAGGTGCTCATTGGATAGG | 60.271 | 57.143 | 0.00 | 0.00 | 31.08 | 2.57 |
119 | 120 | 1.072965 | GGAGGTGCTCATTGGATAGGG | 59.927 | 57.143 | 0.00 | 0.00 | 31.08 | 3.53 |
120 | 121 | 1.771255 | GAGGTGCTCATTGGATAGGGT | 59.229 | 52.381 | 0.00 | 0.00 | 0.00 | 4.34 |
121 | 122 | 1.492176 | AGGTGCTCATTGGATAGGGTG | 59.508 | 52.381 | 0.00 | 0.00 | 0.00 | 4.61 |
122 | 123 | 1.212935 | GGTGCTCATTGGATAGGGTGT | 59.787 | 52.381 | 0.00 | 0.00 | 0.00 | 4.16 |
123 | 124 | 2.292267 | GTGCTCATTGGATAGGGTGTG | 58.708 | 52.381 | 0.00 | 0.00 | 0.00 | 3.82 |
124 | 125 | 1.312815 | GCTCATTGGATAGGGTGTGC | 58.687 | 55.000 | 0.00 | 0.00 | 0.00 | 4.57 |
125 | 126 | 1.586422 | CTCATTGGATAGGGTGTGCG | 58.414 | 55.000 | 0.00 | 0.00 | 0.00 | 5.34 |
126 | 127 | 0.908910 | TCATTGGATAGGGTGTGCGT | 59.091 | 50.000 | 0.00 | 0.00 | 0.00 | 5.24 |
127 | 128 | 1.016627 | CATTGGATAGGGTGTGCGTG | 58.983 | 55.000 | 0.00 | 0.00 | 0.00 | 5.34 |
128 | 129 | 0.618458 | ATTGGATAGGGTGTGCGTGT | 59.382 | 50.000 | 0.00 | 0.00 | 0.00 | 4.49 |
129 | 130 | 0.321210 | TTGGATAGGGTGTGCGTGTG | 60.321 | 55.000 | 0.00 | 0.00 | 0.00 | 3.82 |
130 | 131 | 1.295423 | GGATAGGGTGTGCGTGTGT | 59.705 | 57.895 | 0.00 | 0.00 | 0.00 | 3.72 |
131 | 132 | 1.019278 | GGATAGGGTGTGCGTGTGTG | 61.019 | 60.000 | 0.00 | 0.00 | 0.00 | 3.82 |
132 | 133 | 0.320421 | GATAGGGTGTGCGTGTGTGT | 60.320 | 55.000 | 0.00 | 0.00 | 0.00 | 3.72 |
133 | 134 | 0.107831 | ATAGGGTGTGCGTGTGTGTT | 59.892 | 50.000 | 0.00 | 0.00 | 0.00 | 3.32 |
134 | 135 | 0.531090 | TAGGGTGTGCGTGTGTGTTC | 60.531 | 55.000 | 0.00 | 0.00 | 0.00 | 3.18 |
135 | 136 | 2.109739 | GGGTGTGCGTGTGTGTTCA | 61.110 | 57.895 | 0.00 | 0.00 | 0.00 | 3.18 |
136 | 137 | 1.444119 | GGGTGTGCGTGTGTGTTCAT | 61.444 | 55.000 | 0.00 | 0.00 | 0.00 | 2.57 |
137 | 138 | 1.222300 | GGTGTGCGTGTGTGTTCATA | 58.778 | 50.000 | 0.00 | 0.00 | 0.00 | 2.15 |
138 | 139 | 1.600013 | GGTGTGCGTGTGTGTTCATAA | 59.400 | 47.619 | 0.00 | 0.00 | 0.00 | 1.90 |
139 | 140 | 2.349438 | GGTGTGCGTGTGTGTTCATAAG | 60.349 | 50.000 | 0.00 | 0.00 | 0.00 | 1.73 |
140 | 141 | 1.870402 | TGTGCGTGTGTGTTCATAAGG | 59.130 | 47.619 | 0.00 | 0.00 | 0.00 | 2.69 |
141 | 142 | 2.139917 | GTGCGTGTGTGTTCATAAGGA | 58.860 | 47.619 | 0.00 | 0.00 | 0.00 | 3.36 |
142 | 143 | 2.742053 | GTGCGTGTGTGTTCATAAGGAT | 59.258 | 45.455 | 0.00 | 0.00 | 0.00 | 3.24 |
143 | 144 | 2.741517 | TGCGTGTGTGTTCATAAGGATG | 59.258 | 45.455 | 0.00 | 0.00 | 0.00 | 3.51 |
144 | 145 | 3.000041 | GCGTGTGTGTTCATAAGGATGA | 59.000 | 45.455 | 0.00 | 0.00 | 40.45 | 2.92 |
145 | 146 | 3.062639 | GCGTGTGTGTTCATAAGGATGAG | 59.937 | 47.826 | 0.00 | 0.00 | 43.03 | 2.90 |
146 | 147 | 4.245660 | CGTGTGTGTTCATAAGGATGAGT | 58.754 | 43.478 | 0.00 | 0.00 | 43.03 | 3.41 |
147 | 148 | 5.407502 | CGTGTGTGTTCATAAGGATGAGTA | 58.592 | 41.667 | 0.00 | 0.00 | 43.03 | 2.59 |
148 | 149 | 6.042777 | CGTGTGTGTTCATAAGGATGAGTAT | 58.957 | 40.000 | 0.00 | 0.00 | 43.03 | 2.12 |
149 | 150 | 7.200455 | CGTGTGTGTTCATAAGGATGAGTATA | 58.800 | 38.462 | 0.00 | 0.00 | 43.03 | 1.47 |
150 | 151 | 7.867909 | CGTGTGTGTTCATAAGGATGAGTATAT | 59.132 | 37.037 | 0.00 | 0.00 | 43.03 | 0.86 |
151 | 152 | 8.982685 | GTGTGTGTTCATAAGGATGAGTATATG | 58.017 | 37.037 | 0.00 | 0.00 | 43.03 | 1.78 |
152 | 153 | 7.657354 | TGTGTGTTCATAAGGATGAGTATATGC | 59.343 | 37.037 | 0.00 | 0.00 | 43.03 | 3.14 |
153 | 154 | 6.868339 | TGTGTTCATAAGGATGAGTATATGCG | 59.132 | 38.462 | 0.00 | 0.00 | 43.03 | 4.73 |
154 | 155 | 5.869344 | TGTTCATAAGGATGAGTATATGCGC | 59.131 | 40.000 | 0.00 | 0.00 | 43.03 | 6.09 |
155 | 156 | 4.672409 | TCATAAGGATGAGTATATGCGCG | 58.328 | 43.478 | 0.00 | 0.00 | 37.15 | 6.86 |
156 | 157 | 4.157840 | TCATAAGGATGAGTATATGCGCGT | 59.842 | 41.667 | 8.43 | 7.55 | 37.15 | 6.01 |
157 | 158 | 5.355910 | TCATAAGGATGAGTATATGCGCGTA | 59.644 | 40.000 | 12.53 | 12.53 | 37.15 | 4.42 |
158 | 159 | 4.720649 | AAGGATGAGTATATGCGCGTAT | 57.279 | 40.909 | 24.52 | 24.52 | 0.00 | 3.06 |
159 | 160 | 4.033990 | AGGATGAGTATATGCGCGTATG | 57.966 | 45.455 | 28.29 | 0.00 | 0.00 | 2.39 |
160 | 161 | 3.444034 | AGGATGAGTATATGCGCGTATGT | 59.556 | 43.478 | 28.29 | 15.87 | 0.00 | 2.29 |
161 | 162 | 4.638865 | AGGATGAGTATATGCGCGTATGTA | 59.361 | 41.667 | 28.29 | 14.73 | 0.00 | 2.29 |
162 | 163 | 5.299531 | AGGATGAGTATATGCGCGTATGTAT | 59.700 | 40.000 | 28.29 | 17.24 | 0.00 | 2.29 |
163 | 164 | 5.399596 | GGATGAGTATATGCGCGTATGTATG | 59.600 | 44.000 | 28.29 | 0.00 | 0.00 | 2.39 |
164 | 165 | 5.554822 | TGAGTATATGCGCGTATGTATGA | 57.445 | 39.130 | 28.29 | 8.51 | 0.00 | 2.15 |
165 | 166 | 5.569413 | TGAGTATATGCGCGTATGTATGAG | 58.431 | 41.667 | 28.29 | 0.00 | 0.00 | 2.90 |
166 | 167 | 4.352039 | AGTATATGCGCGTATGTATGAGC | 58.648 | 43.478 | 28.29 | 5.65 | 38.31 | 4.26 |
169 | 170 | 4.228451 | CGCGTATGTATGAGCGCT | 57.772 | 55.556 | 11.27 | 11.27 | 46.56 | 5.92 |
170 | 171 | 2.506544 | CGCGTATGTATGAGCGCTT | 58.493 | 52.632 | 13.26 | 0.00 | 46.56 | 4.68 |
171 | 172 | 0.159554 | CGCGTATGTATGAGCGCTTG | 59.840 | 55.000 | 13.26 | 0.00 | 46.56 | 4.01 |
172 | 173 | 0.111089 | GCGTATGTATGAGCGCTTGC | 60.111 | 55.000 | 13.26 | 0.00 | 45.48 | 4.01 |
173 | 174 | 0.159554 | CGTATGTATGAGCGCTTGCG | 59.840 | 55.000 | 13.26 | 10.90 | 45.69 | 4.85 |
174 | 175 | 1.209128 | GTATGTATGAGCGCTTGCGT | 58.791 | 50.000 | 13.26 | 3.97 | 45.69 | 5.24 |
175 | 176 | 1.190323 | GTATGTATGAGCGCTTGCGTC | 59.810 | 52.381 | 13.26 | 12.36 | 45.69 | 5.19 |
176 | 177 | 0.179100 | ATGTATGAGCGCTTGCGTCT | 60.179 | 50.000 | 13.26 | 13.17 | 45.69 | 4.18 |
177 | 178 | 0.454196 | TGTATGAGCGCTTGCGTCTA | 59.546 | 50.000 | 13.26 | 3.62 | 45.69 | 2.59 |
178 | 179 | 1.067060 | TGTATGAGCGCTTGCGTCTAT | 59.933 | 47.619 | 13.26 | 10.15 | 45.69 | 1.98 |
179 | 180 | 2.292292 | TGTATGAGCGCTTGCGTCTATA | 59.708 | 45.455 | 13.26 | 9.29 | 45.69 | 1.31 |
180 | 181 | 1.772182 | ATGAGCGCTTGCGTCTATAC | 58.228 | 50.000 | 13.26 | 0.00 | 45.69 | 1.47 |
181 | 182 | 0.738975 | TGAGCGCTTGCGTCTATACT | 59.261 | 50.000 | 13.26 | 3.73 | 45.69 | 2.12 |
182 | 183 | 1.124462 | GAGCGCTTGCGTCTATACTG | 58.876 | 55.000 | 13.26 | 0.00 | 45.69 | 2.74 |
183 | 184 | 0.738975 | AGCGCTTGCGTCTATACTGA | 59.261 | 50.000 | 16.38 | 0.00 | 45.69 | 3.41 |
184 | 185 | 1.338337 | AGCGCTTGCGTCTATACTGAT | 59.662 | 47.619 | 16.38 | 0.00 | 45.69 | 2.90 |
185 | 186 | 1.453524 | GCGCTTGCGTCTATACTGATG | 59.546 | 52.381 | 16.38 | 0.00 | 0.00 | 3.07 |
186 | 187 | 2.732366 | CGCTTGCGTCTATACTGATGT | 58.268 | 47.619 | 6.86 | 0.00 | 0.00 | 3.06 |
187 | 188 | 3.116300 | CGCTTGCGTCTATACTGATGTT | 58.884 | 45.455 | 6.86 | 0.00 | 0.00 | 2.71 |
188 | 189 | 4.287720 | CGCTTGCGTCTATACTGATGTTA | 58.712 | 43.478 | 6.86 | 0.00 | 0.00 | 2.41 |
189 | 190 | 4.738252 | CGCTTGCGTCTATACTGATGTTAA | 59.262 | 41.667 | 6.86 | 0.00 | 0.00 | 2.01 |
190 | 191 | 5.231357 | CGCTTGCGTCTATACTGATGTTAAA | 59.769 | 40.000 | 6.86 | 0.00 | 0.00 | 1.52 |
191 | 192 | 6.237728 | CGCTTGCGTCTATACTGATGTTAAAA | 60.238 | 38.462 | 6.86 | 0.00 | 0.00 | 1.52 |
192 | 193 | 7.461107 | GCTTGCGTCTATACTGATGTTAAAAA | 58.539 | 34.615 | 0.00 | 0.00 | 0.00 | 1.94 |
215 | 216 | 7.639113 | AAAATTGCCCGATAAGTAAATCAGA | 57.361 | 32.000 | 0.00 | 0.00 | 0.00 | 3.27 |
216 | 217 | 7.639113 | AAATTGCCCGATAAGTAAATCAGAA | 57.361 | 32.000 | 0.00 | 0.00 | 0.00 | 3.02 |
217 | 218 | 6.867662 | ATTGCCCGATAAGTAAATCAGAAG | 57.132 | 37.500 | 0.00 | 0.00 | 0.00 | 2.85 |
218 | 219 | 5.607939 | TGCCCGATAAGTAAATCAGAAGA | 57.392 | 39.130 | 0.00 | 0.00 | 0.00 | 2.87 |
219 | 220 | 5.984725 | TGCCCGATAAGTAAATCAGAAGAA | 58.015 | 37.500 | 0.00 | 0.00 | 0.00 | 2.52 |
220 | 221 | 6.411376 | TGCCCGATAAGTAAATCAGAAGAAA | 58.589 | 36.000 | 0.00 | 0.00 | 0.00 | 2.52 |
221 | 222 | 6.882140 | TGCCCGATAAGTAAATCAGAAGAAAA | 59.118 | 34.615 | 0.00 | 0.00 | 0.00 | 2.29 |
222 | 223 | 7.148306 | TGCCCGATAAGTAAATCAGAAGAAAAC | 60.148 | 37.037 | 0.00 | 0.00 | 0.00 | 2.43 |
223 | 224 | 7.399523 | CCCGATAAGTAAATCAGAAGAAAACG | 58.600 | 38.462 | 0.00 | 0.00 | 0.00 | 3.60 |
224 | 225 | 7.277098 | CCCGATAAGTAAATCAGAAGAAAACGA | 59.723 | 37.037 | 0.00 | 0.00 | 0.00 | 3.85 |
225 | 226 | 8.818057 | CCGATAAGTAAATCAGAAGAAAACGAT | 58.182 | 33.333 | 0.00 | 0.00 | 0.00 | 3.73 |
226 | 227 | 9.625009 | CGATAAGTAAATCAGAAGAAAACGATG | 57.375 | 33.333 | 0.00 | 0.00 | 0.00 | 3.84 |
227 | 228 | 9.922305 | GATAAGTAAATCAGAAGAAAACGATGG | 57.078 | 33.333 | 0.00 | 0.00 | 0.00 | 3.51 |
228 | 229 | 7.745620 | AAGTAAATCAGAAGAAAACGATGGT | 57.254 | 32.000 | 0.00 | 0.00 | 0.00 | 3.55 |
233 | 234 | 7.687941 | AATCAGAAGAAAACGATGGTGTAAT | 57.312 | 32.000 | 0.00 | 0.00 | 0.00 | 1.89 |
236 | 237 | 6.072728 | TCAGAAGAAAACGATGGTGTAATTGG | 60.073 | 38.462 | 0.00 | 0.00 | 0.00 | 3.16 |
270 | 271 | 7.743520 | TTTTCTCACAATTTTGGTTTCGTAC | 57.256 | 32.000 | 0.00 | 0.00 | 0.00 | 3.67 |
276 | 277 | 7.457868 | TCACAATTTTGGTTTCGTACGATATC | 58.542 | 34.615 | 20.27 | 15.40 | 0.00 | 1.63 |
277 | 278 | 6.685403 | CACAATTTTGGTTTCGTACGATATCC | 59.315 | 38.462 | 20.27 | 19.95 | 0.00 | 2.59 |
279 | 280 | 4.468765 | TTTGGTTTCGTACGATATCCCA | 57.531 | 40.909 | 20.27 | 18.11 | 0.00 | 4.37 |
280 | 281 | 4.675976 | TTGGTTTCGTACGATATCCCAT | 57.324 | 40.909 | 20.27 | 0.00 | 0.00 | 4.00 |
281 | 282 | 5.787953 | TTGGTTTCGTACGATATCCCATA | 57.212 | 39.130 | 20.27 | 10.12 | 0.00 | 2.74 |
282 | 283 | 5.787953 | TGGTTTCGTACGATATCCCATAA | 57.212 | 39.130 | 20.27 | 4.65 | 0.00 | 1.90 |
294 | 295 | 8.099364 | ACGATATCCCATAAATAAAACAGCTG | 57.901 | 34.615 | 13.48 | 13.48 | 0.00 | 4.24 |
304 | 311 | 2.063541 | AAAACAGCTGCTGCCACGAC | 62.064 | 55.000 | 28.39 | 0.00 | 40.80 | 4.34 |
496 | 508 | 3.124921 | CCATGACGCAACCCCGAC | 61.125 | 66.667 | 0.00 | 0.00 | 0.00 | 4.79 |
497 | 509 | 3.124921 | CATGACGCAACCCCGACC | 61.125 | 66.667 | 0.00 | 0.00 | 0.00 | 4.79 |
500 | 512 | 3.384532 | GACGCAACCCCGACCCTA | 61.385 | 66.667 | 0.00 | 0.00 | 0.00 | 3.53 |
503 | 515 | 4.105553 | GCAACCCCGACCCTACCC | 62.106 | 72.222 | 0.00 | 0.00 | 0.00 | 3.69 |
504 | 516 | 3.405318 | CAACCCCGACCCTACCCC | 61.405 | 72.222 | 0.00 | 0.00 | 0.00 | 4.95 |
1046 | 1079 | 1.742761 | ACAGCCATCGGAATCAACAG | 58.257 | 50.000 | 0.00 | 0.00 | 0.00 | 3.16 |
1047 | 1080 | 0.379669 | CAGCCATCGGAATCAACAGC | 59.620 | 55.000 | 0.00 | 0.00 | 0.00 | 4.40 |
1048 | 1081 | 0.035152 | AGCCATCGGAATCAACAGCA | 60.035 | 50.000 | 0.00 | 0.00 | 0.00 | 4.41 |
1083 | 1116 | 4.647424 | GATCTCATCGACCAACTCTCTT | 57.353 | 45.455 | 0.00 | 0.00 | 0.00 | 2.85 |
1085 | 1118 | 2.755655 | TCTCATCGACCAACTCTCTTCC | 59.244 | 50.000 | 0.00 | 0.00 | 0.00 | 3.46 |
1086 | 1119 | 2.493675 | CTCATCGACCAACTCTCTTCCA | 59.506 | 50.000 | 0.00 | 0.00 | 0.00 | 3.53 |
1087 | 1120 | 2.897326 | TCATCGACCAACTCTCTTCCAA | 59.103 | 45.455 | 0.00 | 0.00 | 0.00 | 3.53 |
1088 | 1121 | 3.056536 | TCATCGACCAACTCTCTTCCAAG | 60.057 | 47.826 | 0.00 | 0.00 | 0.00 | 3.61 |
1089 | 1122 | 2.317040 | TCGACCAACTCTCTTCCAAGT | 58.683 | 47.619 | 0.00 | 0.00 | 0.00 | 3.16 |
1090 | 1123 | 2.698797 | TCGACCAACTCTCTTCCAAGTT | 59.301 | 45.455 | 0.00 | 0.00 | 36.16 | 2.66 |
1091 | 1124 | 3.134081 | TCGACCAACTCTCTTCCAAGTTT | 59.866 | 43.478 | 0.00 | 0.00 | 33.53 | 2.66 |
1092 | 1125 | 3.495001 | CGACCAACTCTCTTCCAAGTTTC | 59.505 | 47.826 | 0.00 | 0.00 | 33.53 | 2.78 |
1093 | 1126 | 3.467803 | ACCAACTCTCTTCCAAGTTTCG | 58.532 | 45.455 | 0.00 | 0.00 | 33.53 | 3.46 |
1094 | 1127 | 3.134081 | ACCAACTCTCTTCCAAGTTTCGA | 59.866 | 43.478 | 0.00 | 0.00 | 33.53 | 3.71 |
1095 | 1128 | 4.202367 | ACCAACTCTCTTCCAAGTTTCGAT | 60.202 | 41.667 | 0.00 | 0.00 | 33.53 | 3.59 |
1593 | 1771 | 1.471153 | GGCTCGCTCAGGGTAAGTTAC | 60.471 | 57.143 | 4.32 | 4.32 | 0.00 | 2.50 |
1595 | 1773 | 2.686915 | GCTCGCTCAGGGTAAGTTACTA | 59.313 | 50.000 | 12.65 | 0.00 | 0.00 | 1.82 |
1596 | 1774 | 3.318557 | GCTCGCTCAGGGTAAGTTACTAT | 59.681 | 47.826 | 12.65 | 0.00 | 0.00 | 2.12 |
1598 | 1781 | 5.258456 | TCGCTCAGGGTAAGTTACTATTG | 57.742 | 43.478 | 12.65 | 8.74 | 0.00 | 1.90 |
1602 | 1785 | 5.585047 | GCTCAGGGTAAGTTACTATTGGTTG | 59.415 | 44.000 | 12.65 | 2.51 | 0.00 | 3.77 |
1680 | 1887 | 5.125900 | TGATTGATTGATTCGGTGCTGATTT | 59.874 | 36.000 | 0.00 | 0.00 | 0.00 | 2.17 |
1685 | 1892 | 4.359971 | TGATTCGGTGCTGATTTTGATG | 57.640 | 40.909 | 0.00 | 0.00 | 0.00 | 3.07 |
1686 | 1893 | 4.009002 | TGATTCGGTGCTGATTTTGATGA | 58.991 | 39.130 | 0.00 | 0.00 | 0.00 | 2.92 |
1687 | 1894 | 4.641541 | TGATTCGGTGCTGATTTTGATGAT | 59.358 | 37.500 | 0.00 | 0.00 | 0.00 | 2.45 |
1688 | 1895 | 5.125900 | TGATTCGGTGCTGATTTTGATGATT | 59.874 | 36.000 | 0.00 | 0.00 | 0.00 | 2.57 |
1815 | 2022 | 0.920763 | ATGATGGTGGAGCCCAAGGA | 60.921 | 55.000 | 0.00 | 0.00 | 38.20 | 3.36 |
1820 | 2027 | 3.011517 | TGGAGCCCAAGGAGGAGC | 61.012 | 66.667 | 0.00 | 0.00 | 41.22 | 4.70 |
1823 | 2030 | 3.672295 | GAGCCCAAGGAGGAGCACG | 62.672 | 68.421 | 0.00 | 0.00 | 41.22 | 5.34 |
1825 | 2032 | 4.785453 | CCCAAGGAGGAGCACGCC | 62.785 | 72.222 | 0.00 | 0.00 | 41.22 | 5.68 |
1885 | 2092 | 2.807045 | CAGTCGCACTCGCACTCC | 60.807 | 66.667 | 0.00 | 0.00 | 38.40 | 3.85 |
2125 | 2338 | 2.202919 | CTCGACATGATGCCGCCA | 60.203 | 61.111 | 0.00 | 0.00 | 0.00 | 5.69 |
2146 | 2359 | 0.589223 | GGGACGATCTGCTCTACTCG | 59.411 | 60.000 | 0.00 | 0.00 | 37.17 | 4.18 |
2164 | 2377 | 4.005978 | TCCCTCTTCGCCTCCCCA | 62.006 | 66.667 | 0.00 | 0.00 | 0.00 | 4.96 |
2165 | 2378 | 3.009115 | CCCTCTTCGCCTCCCCAA | 61.009 | 66.667 | 0.00 | 0.00 | 0.00 | 4.12 |
2230 | 2443 | 2.739379 | GTTCTAAGCAGAGCCAAGACAC | 59.261 | 50.000 | 0.00 | 0.00 | 30.73 | 3.67 |
2242 | 2455 | 1.273606 | CCAAGACACAGACCGTCAGAT | 59.726 | 52.381 | 0.40 | 0.00 | 35.77 | 2.90 |
2338 | 2553 | 0.342313 | ATAGGAAACGGGAGGGAGGT | 59.658 | 55.000 | 0.00 | 0.00 | 0.00 | 3.85 |
2339 | 2554 | 0.325016 | TAGGAAACGGGAGGGAGGTC | 60.325 | 60.000 | 0.00 | 0.00 | 0.00 | 3.85 |
2583 | 2812 | 4.142988 | CCAAATTTTGCTGTTATGCTGCTG | 60.143 | 41.667 | 3.50 | 0.00 | 41.79 | 4.41 |
2584 | 2813 | 2.068837 | TTTTGCTGTTATGCTGCTGC | 57.931 | 45.000 | 8.89 | 8.89 | 41.79 | 5.25 |
2585 | 2814 | 1.250328 | TTTGCTGTTATGCTGCTGCT | 58.750 | 45.000 | 17.00 | 5.09 | 41.79 | 4.24 |
2586 | 2815 | 0.806868 | TTGCTGTTATGCTGCTGCTC | 59.193 | 50.000 | 17.00 | 5.60 | 41.79 | 4.26 |
2587 | 2816 | 0.035725 | TGCTGTTATGCTGCTGCTCT | 60.036 | 50.000 | 17.00 | 6.78 | 41.79 | 4.09 |
2588 | 2817 | 1.207811 | TGCTGTTATGCTGCTGCTCTA | 59.792 | 47.619 | 17.00 | 5.82 | 41.79 | 2.43 |
2589 | 2818 | 1.596727 | GCTGTTATGCTGCTGCTCTAC | 59.403 | 52.381 | 17.00 | 11.32 | 40.48 | 2.59 |
2595 | 2824 | 2.276732 | TGCTGCTGCTCTACCTTTTT | 57.723 | 45.000 | 17.00 | 0.00 | 40.48 | 1.94 |
2615 | 2844 | 0.535335 | TGTAGTCGGGCAGGATGAAC | 59.465 | 55.000 | 0.00 | 0.00 | 39.69 | 3.18 |
2654 | 2886 | 4.220821 | TCAGTCTGATCTAATAATCCGCCC | 59.779 | 45.833 | 0.00 | 0.00 | 0.00 | 6.13 |
2660 | 2892 | 3.547054 | TCTAATAATCCGCCCGTGTTT | 57.453 | 42.857 | 0.00 | 0.00 | 0.00 | 2.83 |
2748 | 2989 | 1.676635 | CCGGACCGTCCACTCACTA | 60.677 | 63.158 | 17.87 | 0.00 | 35.91 | 2.74 |
2764 | 3005 | 3.369175 | TCACTATGATCTCACAGGCAGT | 58.631 | 45.455 | 0.00 | 0.00 | 0.00 | 4.40 |
2801 | 4398 | 0.801067 | GCGGCAGTGACCTTACTACG | 60.801 | 60.000 | 0.00 | 0.00 | 35.01 | 3.51 |
2824 | 4430 | 5.343593 | CGAACAGCAACAAACACAACTTAAA | 59.656 | 36.000 | 0.00 | 0.00 | 0.00 | 1.52 |
2830 | 4436 | 5.569823 | GCAACAAACACAACTTAAACTTCGA | 59.430 | 36.000 | 0.00 | 0.00 | 0.00 | 3.71 |
2838 | 4444 | 7.987649 | ACACAACTTAAACTTCGACCAAAATA | 58.012 | 30.769 | 0.00 | 0.00 | 0.00 | 1.40 |
2849 | 4455 | 4.312443 | TCGACCAAAATAGAACCAGTGAC | 58.688 | 43.478 | 0.00 | 0.00 | 0.00 | 3.67 |
2915 | 4523 | 2.573009 | TCATCCTGCCTGACATCAGAAA | 59.427 | 45.455 | 10.55 | 0.00 | 46.59 | 2.52 |
2916 | 4524 | 3.201487 | TCATCCTGCCTGACATCAGAAAT | 59.799 | 43.478 | 10.55 | 0.00 | 46.59 | 2.17 |
2967 | 4583 | 0.163788 | CGCGTACAAGAAGTGCAAGG | 59.836 | 55.000 | 0.00 | 0.00 | 32.52 | 3.61 |
2968 | 4584 | 0.517316 | GCGTACAAGAAGTGCAAGGG | 59.483 | 55.000 | 0.00 | 0.00 | 32.52 | 3.95 |
2969 | 4585 | 1.878953 | CGTACAAGAAGTGCAAGGGT | 58.121 | 50.000 | 0.00 | 0.00 | 32.52 | 4.34 |
2970 | 4586 | 2.868839 | GCGTACAAGAAGTGCAAGGGTA | 60.869 | 50.000 | 0.00 | 0.00 | 32.52 | 3.69 |
2971 | 4587 | 2.993899 | CGTACAAGAAGTGCAAGGGTAG | 59.006 | 50.000 | 0.00 | 0.00 | 32.52 | 3.18 |
2972 | 4588 | 3.554337 | CGTACAAGAAGTGCAAGGGTAGT | 60.554 | 47.826 | 0.00 | 0.00 | 32.52 | 2.73 |
2973 | 4589 | 2.851195 | ACAAGAAGTGCAAGGGTAGTG | 58.149 | 47.619 | 0.00 | 0.00 | 0.00 | 2.74 |
2974 | 4590 | 2.438021 | ACAAGAAGTGCAAGGGTAGTGA | 59.562 | 45.455 | 0.00 | 0.00 | 0.00 | 3.41 |
2975 | 4591 | 2.808543 | CAAGAAGTGCAAGGGTAGTGAC | 59.191 | 50.000 | 0.00 | 0.00 | 0.00 | 3.67 |
2976 | 4592 | 2.047061 | AGAAGTGCAAGGGTAGTGACA | 58.953 | 47.619 | 0.00 | 0.00 | 0.00 | 3.58 |
2977 | 4593 | 2.143925 | GAAGTGCAAGGGTAGTGACAC | 58.856 | 52.381 | 0.00 | 0.00 | 0.00 | 3.67 |
2978 | 4594 | 0.033504 | AGTGCAAGGGTAGTGACACG | 59.966 | 55.000 | 0.00 | 0.00 | 32.50 | 4.49 |
2979 | 4595 | 0.032952 | GTGCAAGGGTAGTGACACGA | 59.967 | 55.000 | 0.00 | 0.00 | 32.50 | 4.35 |
2993 | 4609 | 3.122613 | GTGACACGAGAGCTCAAATCTTG | 59.877 | 47.826 | 17.77 | 11.07 | 34.79 | 3.02 |
3032 | 4648 | 6.662414 | TTTGGATAAATCGACACAGATCAC | 57.338 | 37.500 | 0.00 | 0.00 | 0.00 | 3.06 |
3050 | 4666 | 9.307121 | ACAGATCACGAAAAATTAGACTGATAG | 57.693 | 33.333 | 0.00 | 0.00 | 0.00 | 2.08 |
3062 | 4678 | 9.520515 | AAATTAGACTGATAGCAGGAAGAAAAA | 57.479 | 29.630 | 13.45 | 0.00 | 46.60 | 1.94 |
3063 | 4679 | 9.692325 | AATTAGACTGATAGCAGGAAGAAAAAT | 57.308 | 29.630 | 13.45 | 0.00 | 46.60 | 1.82 |
3064 | 4680 | 8.723942 | TTAGACTGATAGCAGGAAGAAAAATC | 57.276 | 34.615 | 13.45 | 0.00 | 46.60 | 2.17 |
3065 | 4681 | 6.715280 | AGACTGATAGCAGGAAGAAAAATCA | 58.285 | 36.000 | 13.45 | 0.00 | 46.60 | 2.57 |
3094 | 4712 | 0.175073 | GTCGGAGGTGGCGAACTTAT | 59.825 | 55.000 | 0.00 | 0.00 | 0.00 | 1.73 |
3139 | 4762 | 9.234827 | TGAATATAGAGATAATGTGCATTTGGG | 57.765 | 33.333 | 2.56 | 0.00 | 32.50 | 4.12 |
3175 | 4798 | 2.111384 | TGGTCTGCCCAAGATCTAGTC | 58.889 | 52.381 | 0.00 | 0.00 | 41.50 | 2.59 |
3176 | 4799 | 2.292521 | TGGTCTGCCCAAGATCTAGTCT | 60.293 | 50.000 | 0.00 | 0.00 | 41.50 | 3.24 |
3179 | 4802 | 3.068024 | GTCTGCCCAAGATCTAGTCTCTG | 59.932 | 52.174 | 0.00 | 0.00 | 37.23 | 3.35 |
3183 | 4806 | 3.894427 | GCCCAAGATCTAGTCTCTGATGA | 59.106 | 47.826 | 0.00 | 0.00 | 35.67 | 2.92 |
3184 | 4807 | 4.343526 | GCCCAAGATCTAGTCTCTGATGAA | 59.656 | 45.833 | 0.00 | 0.00 | 35.67 | 2.57 |
3207 | 4830 | 6.641169 | AGAGAACTTGAATCTCCAAAAACC | 57.359 | 37.500 | 0.17 | 0.00 | 43.52 | 3.27 |
3241 | 4864 | 3.261643 | GCCATCATGGGGTCTTTCTTTTT | 59.738 | 43.478 | 5.62 | 0.00 | 38.19 | 1.94 |
3268 | 4891 | 6.443849 | ACTGGAGATTTTGGAGTAGAATGGTA | 59.556 | 38.462 | 0.00 | 0.00 | 0.00 | 3.25 |
3269 | 4892 | 6.889198 | TGGAGATTTTGGAGTAGAATGGTAG | 58.111 | 40.000 | 0.00 | 0.00 | 0.00 | 3.18 |
3271 | 4894 | 7.622081 | TGGAGATTTTGGAGTAGAATGGTAGTA | 59.378 | 37.037 | 0.00 | 0.00 | 0.00 | 1.82 |
3272 | 4895 | 7.927092 | GGAGATTTTGGAGTAGAATGGTAGTAC | 59.073 | 40.741 | 0.00 | 0.00 | 0.00 | 2.73 |
3273 | 4896 | 7.490000 | AGATTTTGGAGTAGAATGGTAGTACG | 58.510 | 38.462 | 0.00 | 0.00 | 0.00 | 3.67 |
3280 | 4903 | 6.461231 | GGAGTAGAATGGTAGTACGCTTCATT | 60.461 | 42.308 | 13.06 | 8.51 | 33.40 | 2.57 |
3283 | 4906 | 6.663944 | AGAATGGTAGTACGCTTCATTTTC | 57.336 | 37.500 | 13.06 | 1.56 | 32.02 | 2.29 |
3288 | 4911 | 5.761234 | TGGTAGTACGCTTCATTTTCTTTGT | 59.239 | 36.000 | 0.00 | 0.00 | 0.00 | 2.83 |
3331 | 4954 | 3.771577 | TTTGAGAACTTGGTCCTCTCC | 57.228 | 47.619 | 3.96 | 0.00 | 35.70 | 3.71 |
3332 | 4955 | 2.704190 | TGAGAACTTGGTCCTCTCCT | 57.296 | 50.000 | 3.96 | 0.00 | 35.70 | 3.69 |
3333 | 4956 | 3.827817 | TGAGAACTTGGTCCTCTCCTA | 57.172 | 47.619 | 3.96 | 0.00 | 35.70 | 2.94 |
3334 | 4957 | 3.432378 | TGAGAACTTGGTCCTCTCCTAC | 58.568 | 50.000 | 3.96 | 0.00 | 35.70 | 3.18 |
3335 | 4958 | 2.761767 | GAGAACTTGGTCCTCTCCTACC | 59.238 | 54.545 | 0.00 | 0.00 | 36.24 | 3.18 |
3345 | 4979 | 4.381398 | GGTCCTCTCCTACCGACTTTAAAC | 60.381 | 50.000 | 0.00 | 0.00 | 0.00 | 2.01 |
3365 | 4999 | 5.526010 | AACTAAAATGAACTAAGCGTCCG | 57.474 | 39.130 | 0.00 | 0.00 | 0.00 | 4.79 |
3385 | 5019 | 4.404507 | CGAAGGGTGTTACACAATCTTG | 57.595 | 45.455 | 17.67 | 8.43 | 35.86 | 3.02 |
3386 | 5020 | 3.364964 | CGAAGGGTGTTACACAATCTTGC | 60.365 | 47.826 | 17.67 | 9.86 | 35.86 | 4.01 |
3387 | 5021 | 3.508845 | AGGGTGTTACACAATCTTGCT | 57.491 | 42.857 | 17.67 | 0.00 | 35.86 | 3.91 |
3388 | 5022 | 3.412386 | AGGGTGTTACACAATCTTGCTC | 58.588 | 45.455 | 17.67 | 0.00 | 35.86 | 4.26 |
3389 | 5023 | 2.159627 | GGGTGTTACACAATCTTGCTCG | 59.840 | 50.000 | 17.67 | 0.00 | 35.86 | 5.03 |
3390 | 5024 | 3.064207 | GGTGTTACACAATCTTGCTCGA | 58.936 | 45.455 | 17.67 | 0.00 | 35.86 | 4.04 |
3391 | 5025 | 3.684788 | GGTGTTACACAATCTTGCTCGAT | 59.315 | 43.478 | 17.67 | 0.00 | 35.86 | 3.59 |
3392 | 5026 | 4.201724 | GGTGTTACACAATCTTGCTCGATC | 60.202 | 45.833 | 17.67 | 0.00 | 35.86 | 3.69 |
3393 | 5027 | 4.388773 | GTGTTACACAATCTTGCTCGATCA | 59.611 | 41.667 | 10.96 | 0.00 | 34.08 | 2.92 |
3394 | 5028 | 5.063944 | GTGTTACACAATCTTGCTCGATCAT | 59.936 | 40.000 | 10.96 | 0.00 | 34.08 | 2.45 |
3395 | 5029 | 5.291858 | TGTTACACAATCTTGCTCGATCATC | 59.708 | 40.000 | 0.00 | 0.00 | 0.00 | 2.92 |
3396 | 5030 | 2.862536 | ACACAATCTTGCTCGATCATCG | 59.137 | 45.455 | 0.00 | 0.00 | 42.10 | 3.84 |
3397 | 5031 | 2.220363 | CACAATCTTGCTCGATCATCGG | 59.780 | 50.000 | 7.33 | 0.00 | 40.88 | 4.18 |
3398 | 5032 | 2.101415 | ACAATCTTGCTCGATCATCGGA | 59.899 | 45.455 | 7.33 | 0.00 | 40.88 | 4.55 |
3399 | 5033 | 3.244009 | ACAATCTTGCTCGATCATCGGAT | 60.244 | 43.478 | 7.33 | 0.00 | 40.88 | 4.18 |
3400 | 5034 | 3.674528 | ATCTTGCTCGATCATCGGATT | 57.325 | 42.857 | 7.33 | 0.00 | 40.88 | 3.01 |
3401 | 5035 | 3.459232 | TCTTGCTCGATCATCGGATTT | 57.541 | 42.857 | 7.33 | 0.00 | 40.88 | 2.17 |
3402 | 5036 | 3.384668 | TCTTGCTCGATCATCGGATTTC | 58.615 | 45.455 | 7.33 | 0.00 | 40.88 | 2.17 |
3403 | 5037 | 3.068732 | TCTTGCTCGATCATCGGATTTCT | 59.931 | 43.478 | 7.33 | 0.00 | 40.88 | 2.52 |
3404 | 5038 | 3.459232 | TGCTCGATCATCGGATTTCTT | 57.541 | 42.857 | 7.33 | 0.00 | 40.88 | 2.52 |
3405 | 5039 | 3.797039 | TGCTCGATCATCGGATTTCTTT | 58.203 | 40.909 | 7.33 | 0.00 | 40.88 | 2.52 |
3406 | 5040 | 4.191544 | TGCTCGATCATCGGATTTCTTTT | 58.808 | 39.130 | 7.33 | 0.00 | 40.88 | 2.27 |
3407 | 5041 | 4.635765 | TGCTCGATCATCGGATTTCTTTTT | 59.364 | 37.500 | 7.33 | 0.00 | 40.88 | 1.94 |
3408 | 5042 | 5.815222 | TGCTCGATCATCGGATTTCTTTTTA | 59.185 | 36.000 | 7.33 | 0.00 | 40.88 | 1.52 |
3409 | 5043 | 6.483307 | TGCTCGATCATCGGATTTCTTTTTAT | 59.517 | 34.615 | 7.33 | 0.00 | 40.88 | 1.40 |
3410 | 5044 | 7.012358 | GCTCGATCATCGGATTTCTTTTTATC | 58.988 | 38.462 | 7.33 | 0.00 | 40.88 | 1.75 |
3411 | 5045 | 7.307396 | GCTCGATCATCGGATTTCTTTTTATCA | 60.307 | 37.037 | 7.33 | 0.00 | 40.88 | 2.15 |
3412 | 5046 | 7.851508 | TCGATCATCGGATTTCTTTTTATCAC | 58.148 | 34.615 | 7.33 | 0.00 | 40.88 | 3.06 |
3413 | 5047 | 7.494298 | TCGATCATCGGATTTCTTTTTATCACA | 59.506 | 33.333 | 7.33 | 0.00 | 40.88 | 3.58 |
3414 | 5048 | 8.285394 | CGATCATCGGATTTCTTTTTATCACAT | 58.715 | 33.333 | 0.00 | 0.00 | 36.00 | 3.21 |
3417 | 5051 | 9.613428 | TCATCGGATTTCTTTTTATCACATAGT | 57.387 | 29.630 | 0.00 | 0.00 | 0.00 | 2.12 |
3427 | 5061 | 9.120538 | TCTTTTTATCACATAGTAAGAATGGCC | 57.879 | 33.333 | 0.00 | 0.00 | 0.00 | 5.36 |
3428 | 5062 | 7.490962 | TTTTATCACATAGTAAGAATGGCCG | 57.509 | 36.000 | 0.00 | 0.00 | 0.00 | 6.13 |
3429 | 5063 | 4.689612 | ATCACATAGTAAGAATGGCCGT | 57.310 | 40.909 | 0.00 | 0.00 | 0.00 | 5.68 |
3430 | 5064 | 3.792401 | TCACATAGTAAGAATGGCCGTG | 58.208 | 45.455 | 0.00 | 0.00 | 0.00 | 4.94 |
3431 | 5065 | 2.872245 | CACATAGTAAGAATGGCCGTGG | 59.128 | 50.000 | 0.00 | 0.00 | 0.00 | 4.94 |
3432 | 5066 | 2.769663 | ACATAGTAAGAATGGCCGTGGA | 59.230 | 45.455 | 0.00 | 0.00 | 0.00 | 4.02 |
3433 | 5067 | 2.973694 | TAGTAAGAATGGCCGTGGAC | 57.026 | 50.000 | 0.00 | 0.00 | 0.00 | 4.02 |
3434 | 5068 | 1.276622 | AGTAAGAATGGCCGTGGACT | 58.723 | 50.000 | 0.00 | 0.00 | 0.00 | 3.85 |
3435 | 5069 | 1.207329 | AGTAAGAATGGCCGTGGACTC | 59.793 | 52.381 | 0.00 | 0.00 | 0.00 | 3.36 |
3436 | 5070 | 1.207329 | GTAAGAATGGCCGTGGACTCT | 59.793 | 52.381 | 0.00 | 0.00 | 0.00 | 3.24 |
3437 | 5071 | 0.250513 | AAGAATGGCCGTGGACTCTC | 59.749 | 55.000 | 0.00 | 0.00 | 0.00 | 3.20 |
3438 | 5072 | 1.519455 | GAATGGCCGTGGACTCTCG | 60.519 | 63.158 | 0.00 | 0.00 | 0.00 | 4.04 |
3439 | 5073 | 2.227089 | GAATGGCCGTGGACTCTCGT | 62.227 | 60.000 | 0.00 | 0.00 | 0.00 | 4.18 |
3440 | 5074 | 2.227089 | AATGGCCGTGGACTCTCGTC | 62.227 | 60.000 | 0.00 | 0.00 | 39.49 | 4.20 |
3441 | 5075 | 3.371063 | GGCCGTGGACTCTCGTCA | 61.371 | 66.667 | 0.00 | 0.00 | 42.05 | 4.35 |
3442 | 5076 | 2.649034 | GCCGTGGACTCTCGTCAA | 59.351 | 61.111 | 0.00 | 0.00 | 42.05 | 3.18 |
3443 | 5077 | 1.444553 | GCCGTGGACTCTCGTCAAG | 60.445 | 63.158 | 0.00 | 0.00 | 42.05 | 3.02 |
3444 | 5078 | 1.957562 | CCGTGGACTCTCGTCAAGT | 59.042 | 57.895 | 0.00 | 0.00 | 42.05 | 3.16 |
3445 | 5079 | 1.162698 | CCGTGGACTCTCGTCAAGTA | 58.837 | 55.000 | 0.00 | 0.00 | 42.05 | 2.24 |
3446 | 5080 | 1.538512 | CCGTGGACTCTCGTCAAGTAA | 59.461 | 52.381 | 0.00 | 0.00 | 42.05 | 2.24 |
3447 | 5081 | 2.414293 | CCGTGGACTCTCGTCAAGTAAG | 60.414 | 54.545 | 0.00 | 0.00 | 42.05 | 2.34 |
3448 | 5082 | 2.414293 | CGTGGACTCTCGTCAAGTAAGG | 60.414 | 54.545 | 0.00 | 0.00 | 42.05 | 2.69 |
3449 | 5083 | 2.818432 | GTGGACTCTCGTCAAGTAAGGA | 59.182 | 50.000 | 0.00 | 0.00 | 42.05 | 3.36 |
3450 | 5084 | 3.255149 | GTGGACTCTCGTCAAGTAAGGAA | 59.745 | 47.826 | 0.00 | 0.00 | 42.05 | 3.36 |
3451 | 5085 | 3.506455 | TGGACTCTCGTCAAGTAAGGAAG | 59.494 | 47.826 | 0.00 | 0.00 | 42.05 | 3.46 |
3452 | 5086 | 3.506844 | GGACTCTCGTCAAGTAAGGAAGT | 59.493 | 47.826 | 0.00 | 0.00 | 42.05 | 3.01 |
3453 | 5087 | 4.022155 | GGACTCTCGTCAAGTAAGGAAGTT | 60.022 | 45.833 | 0.00 | 0.00 | 42.05 | 2.66 |
3454 | 5088 | 4.872664 | ACTCTCGTCAAGTAAGGAAGTTG | 58.127 | 43.478 | 0.00 | 0.00 | 39.51 | 3.16 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
0 | 1 | 2.034879 | ACTGAAAGCACATCGCCGG | 61.035 | 57.895 | 0.00 | 0.00 | 44.04 | 6.13 |
1 | 2 | 1.133253 | CACTGAAAGCACATCGCCG | 59.867 | 57.895 | 0.00 | 0.00 | 44.04 | 6.46 |
2 | 3 | 1.503542 | CCACTGAAAGCACATCGCC | 59.496 | 57.895 | 0.00 | 0.00 | 44.04 | 5.54 |
3 | 4 | 0.955428 | TCCCACTGAAAGCACATCGC | 60.955 | 55.000 | 0.00 | 0.00 | 37.60 | 4.58 |
4 | 5 | 1.081892 | CTCCCACTGAAAGCACATCG | 58.918 | 55.000 | 0.00 | 0.00 | 37.60 | 3.84 |
5 | 6 | 1.003580 | TCCTCCCACTGAAAGCACATC | 59.996 | 52.381 | 0.00 | 0.00 | 37.60 | 3.06 |
6 | 7 | 1.004044 | CTCCTCCCACTGAAAGCACAT | 59.996 | 52.381 | 0.00 | 0.00 | 37.60 | 3.21 |
7 | 8 | 0.397941 | CTCCTCCCACTGAAAGCACA | 59.602 | 55.000 | 0.00 | 0.00 | 37.60 | 4.57 |
8 | 9 | 0.687354 | TCTCCTCCCACTGAAAGCAC | 59.313 | 55.000 | 0.00 | 0.00 | 37.60 | 4.40 |
9 | 10 | 0.687354 | GTCTCCTCCCACTGAAAGCA | 59.313 | 55.000 | 0.00 | 0.00 | 37.60 | 3.91 |
10 | 11 | 0.390472 | CGTCTCCTCCCACTGAAAGC | 60.390 | 60.000 | 0.00 | 0.00 | 37.60 | 3.51 |
11 | 12 | 0.969894 | ACGTCTCCTCCCACTGAAAG | 59.030 | 55.000 | 0.00 | 0.00 | 42.29 | 2.62 |
12 | 13 | 1.343465 | GAACGTCTCCTCCCACTGAAA | 59.657 | 52.381 | 0.00 | 0.00 | 0.00 | 2.69 |
13 | 14 | 0.966920 | GAACGTCTCCTCCCACTGAA | 59.033 | 55.000 | 0.00 | 0.00 | 0.00 | 3.02 |
14 | 15 | 0.898789 | GGAACGTCTCCTCCCACTGA | 60.899 | 60.000 | 8.87 | 0.00 | 41.61 | 3.41 |
15 | 16 | 1.592223 | GGAACGTCTCCTCCCACTG | 59.408 | 63.158 | 8.87 | 0.00 | 41.61 | 3.66 |
16 | 17 | 4.115270 | GGAACGTCTCCTCCCACT | 57.885 | 61.111 | 8.87 | 0.00 | 41.61 | 4.00 |
37 | 38 | 4.883300 | GTAGGCGCCTCGTCGTCG | 62.883 | 72.222 | 36.73 | 0.00 | 39.34 | 5.12 |
38 | 39 | 4.883300 | CGTAGGCGCCTCGTCGTC | 62.883 | 72.222 | 36.73 | 15.88 | 36.23 | 4.20 |
51 | 52 | 6.364165 | TCTTCAAATTTACGAAGTCACCGTAG | 59.636 | 38.462 | 14.55 | 0.00 | 43.93 | 3.51 |
52 | 53 | 6.215121 | TCTTCAAATTTACGAAGTCACCGTA | 58.785 | 36.000 | 14.55 | 0.00 | 43.93 | 4.02 |
53 | 54 | 5.051816 | TCTTCAAATTTACGAAGTCACCGT | 58.948 | 37.500 | 14.55 | 0.00 | 43.93 | 4.83 |
54 | 55 | 5.585500 | TCTTCAAATTTACGAAGTCACCG | 57.415 | 39.130 | 14.55 | 0.00 | 43.93 | 4.94 |
55 | 56 | 7.015877 | GTCATCTTCAAATTTACGAAGTCACC | 58.984 | 38.462 | 14.55 | 3.35 | 43.93 | 4.02 |
56 | 57 | 7.572759 | TGTCATCTTCAAATTTACGAAGTCAC | 58.427 | 34.615 | 14.55 | 11.11 | 43.93 | 3.67 |
57 | 58 | 7.722795 | TGTCATCTTCAAATTTACGAAGTCA | 57.277 | 32.000 | 14.55 | 9.32 | 43.93 | 3.41 |
58 | 59 | 7.217070 | GCATGTCATCTTCAAATTTACGAAGTC | 59.783 | 37.037 | 14.55 | 7.66 | 43.93 | 3.01 |
60 | 61 | 6.470235 | GGCATGTCATCTTCAAATTTACGAAG | 59.530 | 38.462 | 10.57 | 10.57 | 40.02 | 3.79 |
61 | 62 | 6.321717 | GGCATGTCATCTTCAAATTTACGAA | 58.678 | 36.000 | 0.00 | 0.00 | 0.00 | 3.85 |
62 | 63 | 5.447144 | CGGCATGTCATCTTCAAATTTACGA | 60.447 | 40.000 | 0.00 | 0.00 | 0.00 | 3.43 |
63 | 64 | 4.730042 | CGGCATGTCATCTTCAAATTTACG | 59.270 | 41.667 | 0.00 | 0.00 | 0.00 | 3.18 |
64 | 65 | 5.036737 | CCGGCATGTCATCTTCAAATTTAC | 58.963 | 41.667 | 0.00 | 0.00 | 0.00 | 2.01 |
65 | 66 | 4.439974 | GCCGGCATGTCATCTTCAAATTTA | 60.440 | 41.667 | 24.80 | 0.00 | 0.00 | 1.40 |
66 | 67 | 3.676873 | GCCGGCATGTCATCTTCAAATTT | 60.677 | 43.478 | 24.80 | 0.00 | 0.00 | 1.82 |
67 | 68 | 2.159198 | GCCGGCATGTCATCTTCAAATT | 60.159 | 45.455 | 24.80 | 0.00 | 0.00 | 1.82 |
68 | 69 | 1.406539 | GCCGGCATGTCATCTTCAAAT | 59.593 | 47.619 | 24.80 | 0.00 | 0.00 | 2.32 |
69 | 70 | 0.810648 | GCCGGCATGTCATCTTCAAA | 59.189 | 50.000 | 24.80 | 0.00 | 0.00 | 2.69 |
70 | 71 | 0.035152 | AGCCGGCATGTCATCTTCAA | 60.035 | 50.000 | 31.54 | 0.00 | 0.00 | 2.69 |
71 | 72 | 0.462581 | GAGCCGGCATGTCATCTTCA | 60.463 | 55.000 | 31.54 | 0.00 | 0.00 | 3.02 |
72 | 73 | 0.462581 | TGAGCCGGCATGTCATCTTC | 60.463 | 55.000 | 31.54 | 14.56 | 0.00 | 2.87 |
73 | 74 | 0.463295 | CTGAGCCGGCATGTCATCTT | 60.463 | 55.000 | 31.54 | 3.33 | 0.00 | 2.40 |
74 | 75 | 1.145598 | CTGAGCCGGCATGTCATCT | 59.854 | 57.895 | 31.54 | 4.27 | 0.00 | 2.90 |
75 | 76 | 2.541120 | GCTGAGCCGGCATGTCATC | 61.541 | 63.158 | 31.54 | 16.99 | 35.55 | 2.92 |
76 | 77 | 2.515523 | GCTGAGCCGGCATGTCAT | 60.516 | 61.111 | 31.54 | 6.18 | 35.55 | 3.06 |
77 | 78 | 4.783621 | GGCTGAGCCGGCATGTCA | 62.784 | 66.667 | 31.54 | 22.44 | 39.62 | 3.58 |
94 | 95 | 1.089920 | CCAATGAGCACCTCCGAAAG | 58.910 | 55.000 | 0.00 | 0.00 | 0.00 | 2.62 |
95 | 96 | 0.690192 | TCCAATGAGCACCTCCGAAA | 59.310 | 50.000 | 0.00 | 0.00 | 0.00 | 3.46 |
96 | 97 | 0.911769 | ATCCAATGAGCACCTCCGAA | 59.088 | 50.000 | 0.00 | 0.00 | 0.00 | 4.30 |
97 | 98 | 1.688735 | CTATCCAATGAGCACCTCCGA | 59.311 | 52.381 | 0.00 | 0.00 | 0.00 | 4.55 |
98 | 99 | 1.270518 | CCTATCCAATGAGCACCTCCG | 60.271 | 57.143 | 0.00 | 0.00 | 0.00 | 4.63 |
99 | 100 | 1.072965 | CCCTATCCAATGAGCACCTCC | 59.927 | 57.143 | 0.00 | 0.00 | 0.00 | 4.30 |
100 | 101 | 1.771255 | ACCCTATCCAATGAGCACCTC | 59.229 | 52.381 | 0.00 | 0.00 | 0.00 | 3.85 |
101 | 102 | 1.492176 | CACCCTATCCAATGAGCACCT | 59.508 | 52.381 | 0.00 | 0.00 | 0.00 | 4.00 |
102 | 103 | 1.212935 | ACACCCTATCCAATGAGCACC | 59.787 | 52.381 | 0.00 | 0.00 | 0.00 | 5.01 |
103 | 104 | 2.292267 | CACACCCTATCCAATGAGCAC | 58.708 | 52.381 | 0.00 | 0.00 | 0.00 | 4.40 |
104 | 105 | 1.408683 | GCACACCCTATCCAATGAGCA | 60.409 | 52.381 | 0.00 | 0.00 | 0.00 | 4.26 |
105 | 106 | 1.312815 | GCACACCCTATCCAATGAGC | 58.687 | 55.000 | 0.00 | 0.00 | 0.00 | 4.26 |
106 | 107 | 1.134401 | ACGCACACCCTATCCAATGAG | 60.134 | 52.381 | 0.00 | 0.00 | 0.00 | 2.90 |
107 | 108 | 0.908910 | ACGCACACCCTATCCAATGA | 59.091 | 50.000 | 0.00 | 0.00 | 0.00 | 2.57 |
108 | 109 | 1.016627 | CACGCACACCCTATCCAATG | 58.983 | 55.000 | 0.00 | 0.00 | 0.00 | 2.82 |
109 | 110 | 0.618458 | ACACGCACACCCTATCCAAT | 59.382 | 50.000 | 0.00 | 0.00 | 0.00 | 3.16 |
110 | 111 | 0.321210 | CACACGCACACCCTATCCAA | 60.321 | 55.000 | 0.00 | 0.00 | 0.00 | 3.53 |
111 | 112 | 1.295101 | CACACGCACACCCTATCCA | 59.705 | 57.895 | 0.00 | 0.00 | 0.00 | 3.41 |
112 | 113 | 1.019278 | CACACACGCACACCCTATCC | 61.019 | 60.000 | 0.00 | 0.00 | 0.00 | 2.59 |
113 | 114 | 0.320421 | ACACACACGCACACCCTATC | 60.320 | 55.000 | 0.00 | 0.00 | 0.00 | 2.08 |
114 | 115 | 0.107831 | AACACACACGCACACCCTAT | 59.892 | 50.000 | 0.00 | 0.00 | 0.00 | 2.57 |
115 | 116 | 0.531090 | GAACACACACGCACACCCTA | 60.531 | 55.000 | 0.00 | 0.00 | 0.00 | 3.53 |
116 | 117 | 1.817941 | GAACACACACGCACACCCT | 60.818 | 57.895 | 0.00 | 0.00 | 0.00 | 4.34 |
117 | 118 | 1.444119 | ATGAACACACACGCACACCC | 61.444 | 55.000 | 0.00 | 0.00 | 0.00 | 4.61 |
118 | 119 | 1.222300 | TATGAACACACACGCACACC | 58.778 | 50.000 | 0.00 | 0.00 | 0.00 | 4.16 |
119 | 120 | 2.349438 | CCTTATGAACACACACGCACAC | 60.349 | 50.000 | 0.00 | 0.00 | 0.00 | 3.82 |
120 | 121 | 1.870402 | CCTTATGAACACACACGCACA | 59.130 | 47.619 | 0.00 | 0.00 | 0.00 | 4.57 |
121 | 122 | 2.139917 | TCCTTATGAACACACACGCAC | 58.860 | 47.619 | 0.00 | 0.00 | 0.00 | 5.34 |
122 | 123 | 2.535012 | TCCTTATGAACACACACGCA | 57.465 | 45.000 | 0.00 | 0.00 | 0.00 | 5.24 |
123 | 124 | 3.000041 | TCATCCTTATGAACACACACGC | 59.000 | 45.455 | 0.00 | 0.00 | 39.20 | 5.34 |
124 | 125 | 4.245660 | ACTCATCCTTATGAACACACACG | 58.754 | 43.478 | 0.00 | 0.00 | 41.57 | 4.49 |
125 | 126 | 8.982685 | CATATACTCATCCTTATGAACACACAC | 58.017 | 37.037 | 0.00 | 0.00 | 41.57 | 3.82 |
126 | 127 | 7.657354 | GCATATACTCATCCTTATGAACACACA | 59.343 | 37.037 | 0.00 | 0.00 | 41.57 | 3.72 |
127 | 128 | 7.148738 | CGCATATACTCATCCTTATGAACACAC | 60.149 | 40.741 | 0.00 | 0.00 | 41.57 | 3.82 |
128 | 129 | 6.868339 | CGCATATACTCATCCTTATGAACACA | 59.132 | 38.462 | 0.00 | 0.00 | 41.57 | 3.72 |
129 | 130 | 6.183360 | GCGCATATACTCATCCTTATGAACAC | 60.183 | 42.308 | 0.30 | 0.00 | 41.57 | 3.32 |
130 | 131 | 5.869344 | GCGCATATACTCATCCTTATGAACA | 59.131 | 40.000 | 0.30 | 0.00 | 41.57 | 3.18 |
131 | 132 | 5.004821 | CGCGCATATACTCATCCTTATGAAC | 59.995 | 44.000 | 8.75 | 0.00 | 41.57 | 3.18 |
132 | 133 | 5.102313 | CGCGCATATACTCATCCTTATGAA | 58.898 | 41.667 | 8.75 | 0.00 | 41.57 | 2.57 |
133 | 134 | 4.157840 | ACGCGCATATACTCATCCTTATGA | 59.842 | 41.667 | 5.73 | 0.00 | 39.87 | 2.15 |
134 | 135 | 4.424626 | ACGCGCATATACTCATCCTTATG | 58.575 | 43.478 | 5.73 | 0.00 | 0.00 | 1.90 |
135 | 136 | 4.720649 | ACGCGCATATACTCATCCTTAT | 57.279 | 40.909 | 5.73 | 0.00 | 0.00 | 1.73 |
136 | 137 | 5.124936 | ACATACGCGCATATACTCATCCTTA | 59.875 | 40.000 | 5.73 | 0.00 | 0.00 | 2.69 |
137 | 138 | 4.082190 | ACATACGCGCATATACTCATCCTT | 60.082 | 41.667 | 5.73 | 0.00 | 0.00 | 3.36 |
138 | 139 | 3.444034 | ACATACGCGCATATACTCATCCT | 59.556 | 43.478 | 5.73 | 0.00 | 0.00 | 3.24 |
139 | 140 | 3.770666 | ACATACGCGCATATACTCATCC | 58.229 | 45.455 | 5.73 | 0.00 | 0.00 | 3.51 |
140 | 141 | 6.199393 | TCATACATACGCGCATATACTCATC | 58.801 | 40.000 | 5.73 | 0.00 | 0.00 | 2.92 |
141 | 142 | 6.131544 | TCATACATACGCGCATATACTCAT | 57.868 | 37.500 | 5.73 | 0.00 | 0.00 | 2.90 |
142 | 143 | 5.554822 | TCATACATACGCGCATATACTCA | 57.445 | 39.130 | 5.73 | 0.00 | 0.00 | 3.41 |
143 | 144 | 4.438145 | GCTCATACATACGCGCATATACTC | 59.562 | 45.833 | 5.73 | 0.00 | 0.00 | 2.59 |
144 | 145 | 4.352039 | GCTCATACATACGCGCATATACT | 58.648 | 43.478 | 5.73 | 0.00 | 0.00 | 2.12 |
145 | 146 | 3.177838 | CGCTCATACATACGCGCATATAC | 59.822 | 47.826 | 5.73 | 0.00 | 39.11 | 1.47 |
146 | 147 | 3.359654 | CGCTCATACATACGCGCATATA | 58.640 | 45.455 | 5.73 | 0.00 | 39.11 | 0.86 |
147 | 148 | 2.185262 | CGCTCATACATACGCGCATAT | 58.815 | 47.619 | 5.73 | 0.00 | 39.11 | 1.78 |
148 | 149 | 1.613270 | CGCTCATACATACGCGCATA | 58.387 | 50.000 | 5.73 | 0.00 | 39.11 | 3.14 |
149 | 150 | 2.434688 | CGCTCATACATACGCGCAT | 58.565 | 52.632 | 5.73 | 0.00 | 39.11 | 4.73 |
150 | 151 | 3.916439 | CGCTCATACATACGCGCA | 58.084 | 55.556 | 5.73 | 0.00 | 39.11 | 6.09 |
154 | 155 | 0.159554 | CGCAAGCGCTCATACATACG | 59.840 | 55.000 | 12.06 | 0.00 | 35.30 | 3.06 |
155 | 156 | 1.190323 | GACGCAAGCGCTCATACATAC | 59.810 | 52.381 | 12.06 | 0.00 | 44.19 | 2.39 |
156 | 157 | 1.067060 | AGACGCAAGCGCTCATACATA | 59.933 | 47.619 | 12.06 | 0.00 | 44.19 | 2.29 |
157 | 158 | 0.179100 | AGACGCAAGCGCTCATACAT | 60.179 | 50.000 | 12.06 | 0.00 | 44.19 | 2.29 |
158 | 159 | 0.454196 | TAGACGCAAGCGCTCATACA | 59.546 | 50.000 | 12.06 | 0.00 | 44.19 | 2.29 |
159 | 160 | 1.772182 | ATAGACGCAAGCGCTCATAC | 58.228 | 50.000 | 12.06 | 1.58 | 44.19 | 2.39 |
160 | 161 | 2.552743 | AGTATAGACGCAAGCGCTCATA | 59.447 | 45.455 | 12.06 | 6.40 | 44.19 | 2.15 |
161 | 162 | 1.338337 | AGTATAGACGCAAGCGCTCAT | 59.662 | 47.619 | 12.06 | 7.35 | 44.19 | 2.90 |
162 | 163 | 0.738975 | AGTATAGACGCAAGCGCTCA | 59.261 | 50.000 | 12.06 | 0.00 | 44.19 | 4.26 |
163 | 164 | 1.124462 | CAGTATAGACGCAAGCGCTC | 58.876 | 55.000 | 12.06 | 11.06 | 44.19 | 5.03 |
164 | 165 | 0.738975 | TCAGTATAGACGCAAGCGCT | 59.261 | 50.000 | 15.09 | 2.64 | 44.19 | 5.92 |
165 | 166 | 1.453524 | CATCAGTATAGACGCAAGCGC | 59.546 | 52.381 | 15.09 | 0.00 | 44.19 | 5.92 |
166 | 167 | 2.732366 | ACATCAGTATAGACGCAAGCG | 58.268 | 47.619 | 13.50 | 13.50 | 46.03 | 4.68 |
167 | 168 | 6.583912 | TTTAACATCAGTATAGACGCAAGC | 57.416 | 37.500 | 0.00 | 0.00 | 45.62 | 4.01 |
190 | 191 | 8.062065 | TCTGATTTACTTATCGGGCAATTTTT | 57.938 | 30.769 | 0.00 | 0.00 | 32.77 | 1.94 |
191 | 192 | 7.639113 | TCTGATTTACTTATCGGGCAATTTT | 57.361 | 32.000 | 0.00 | 0.00 | 32.77 | 1.82 |
192 | 193 | 7.556275 | TCTTCTGATTTACTTATCGGGCAATTT | 59.444 | 33.333 | 0.00 | 0.00 | 32.77 | 1.82 |
193 | 194 | 7.054124 | TCTTCTGATTTACTTATCGGGCAATT | 58.946 | 34.615 | 0.00 | 0.00 | 32.77 | 2.32 |
194 | 195 | 6.591935 | TCTTCTGATTTACTTATCGGGCAAT | 58.408 | 36.000 | 0.00 | 0.00 | 32.77 | 3.56 |
195 | 196 | 5.984725 | TCTTCTGATTTACTTATCGGGCAA | 58.015 | 37.500 | 0.00 | 0.00 | 32.77 | 4.52 |
196 | 197 | 5.607939 | TCTTCTGATTTACTTATCGGGCA | 57.392 | 39.130 | 0.00 | 0.00 | 32.77 | 5.36 |
197 | 198 | 6.920569 | TTTCTTCTGATTTACTTATCGGGC | 57.079 | 37.500 | 0.00 | 0.00 | 32.77 | 6.13 |
198 | 199 | 7.277098 | TCGTTTTCTTCTGATTTACTTATCGGG | 59.723 | 37.037 | 0.00 | 0.00 | 32.77 | 5.14 |
199 | 200 | 8.181487 | TCGTTTTCTTCTGATTTACTTATCGG | 57.819 | 34.615 | 0.00 | 0.00 | 33.12 | 4.18 |
200 | 201 | 9.625009 | CATCGTTTTCTTCTGATTTACTTATCG | 57.375 | 33.333 | 0.00 | 0.00 | 0.00 | 2.92 |
201 | 202 | 9.922305 | CCATCGTTTTCTTCTGATTTACTTATC | 57.078 | 33.333 | 0.00 | 0.00 | 0.00 | 1.75 |
202 | 203 | 9.449719 | ACCATCGTTTTCTTCTGATTTACTTAT | 57.550 | 29.630 | 0.00 | 0.00 | 0.00 | 1.73 |
203 | 204 | 8.717821 | CACCATCGTTTTCTTCTGATTTACTTA | 58.282 | 33.333 | 0.00 | 0.00 | 0.00 | 2.24 |
204 | 205 | 7.228706 | ACACCATCGTTTTCTTCTGATTTACTT | 59.771 | 33.333 | 0.00 | 0.00 | 0.00 | 2.24 |
205 | 206 | 6.710744 | ACACCATCGTTTTCTTCTGATTTACT | 59.289 | 34.615 | 0.00 | 0.00 | 0.00 | 2.24 |
206 | 207 | 6.899114 | ACACCATCGTTTTCTTCTGATTTAC | 58.101 | 36.000 | 0.00 | 0.00 | 0.00 | 2.01 |
207 | 208 | 8.610248 | TTACACCATCGTTTTCTTCTGATTTA | 57.390 | 30.769 | 0.00 | 0.00 | 0.00 | 1.40 |
208 | 209 | 7.504924 | TTACACCATCGTTTTCTTCTGATTT | 57.495 | 32.000 | 0.00 | 0.00 | 0.00 | 2.17 |
209 | 210 | 7.687941 | ATTACACCATCGTTTTCTTCTGATT | 57.312 | 32.000 | 0.00 | 0.00 | 0.00 | 2.57 |
210 | 211 | 7.362056 | CCAATTACACCATCGTTTTCTTCTGAT | 60.362 | 37.037 | 0.00 | 0.00 | 0.00 | 2.90 |
211 | 212 | 6.072728 | CCAATTACACCATCGTTTTCTTCTGA | 60.073 | 38.462 | 0.00 | 0.00 | 0.00 | 3.27 |
212 | 213 | 6.086222 | CCAATTACACCATCGTTTTCTTCTG | 58.914 | 40.000 | 0.00 | 0.00 | 0.00 | 3.02 |
213 | 214 | 5.335661 | GCCAATTACACCATCGTTTTCTTCT | 60.336 | 40.000 | 0.00 | 0.00 | 0.00 | 2.85 |
214 | 215 | 4.857037 | GCCAATTACACCATCGTTTTCTTC | 59.143 | 41.667 | 0.00 | 0.00 | 0.00 | 2.87 |
215 | 216 | 4.321675 | GGCCAATTACACCATCGTTTTCTT | 60.322 | 41.667 | 0.00 | 0.00 | 0.00 | 2.52 |
216 | 217 | 3.192633 | GGCCAATTACACCATCGTTTTCT | 59.807 | 43.478 | 0.00 | 0.00 | 0.00 | 2.52 |
217 | 218 | 3.057174 | TGGCCAATTACACCATCGTTTTC | 60.057 | 43.478 | 0.61 | 0.00 | 0.00 | 2.29 |
218 | 219 | 2.894126 | TGGCCAATTACACCATCGTTTT | 59.106 | 40.909 | 0.61 | 0.00 | 0.00 | 2.43 |
219 | 220 | 2.230266 | GTGGCCAATTACACCATCGTTT | 59.770 | 45.455 | 7.24 | 0.00 | 35.53 | 3.60 |
220 | 221 | 1.816224 | GTGGCCAATTACACCATCGTT | 59.184 | 47.619 | 7.24 | 0.00 | 35.53 | 3.85 |
221 | 222 | 1.271652 | TGTGGCCAATTACACCATCGT | 60.272 | 47.619 | 7.24 | 0.00 | 36.80 | 3.73 |
222 | 223 | 1.458398 | TGTGGCCAATTACACCATCG | 58.542 | 50.000 | 7.24 | 0.00 | 36.80 | 3.84 |
223 | 224 | 4.470334 | AAATGTGGCCAATTACACCATC | 57.530 | 40.909 | 7.24 | 0.00 | 36.80 | 3.51 |
224 | 225 | 6.558488 | AATAAATGTGGCCAATTACACCAT | 57.442 | 33.333 | 7.24 | 1.01 | 36.80 | 3.55 |
225 | 226 | 6.365970 | AAATAAATGTGGCCAATTACACCA | 57.634 | 33.333 | 7.24 | 0.00 | 36.80 | 4.17 |
226 | 227 | 7.102993 | AGAAAATAAATGTGGCCAATTACACC | 58.897 | 34.615 | 7.24 | 0.00 | 36.80 | 4.16 |
227 | 228 | 7.816995 | TGAGAAAATAAATGTGGCCAATTACAC | 59.183 | 33.333 | 7.24 | 0.00 | 38.08 | 2.90 |
228 | 229 | 7.816995 | GTGAGAAAATAAATGTGGCCAATTACA | 59.183 | 33.333 | 7.24 | 0.08 | 0.00 | 2.41 |
233 | 234 | 5.798125 | TGTGAGAAAATAAATGTGGCCAA | 57.202 | 34.783 | 7.24 | 0.00 | 0.00 | 4.52 |
236 | 237 | 8.016801 | CCAAAATTGTGAGAAAATAAATGTGGC | 58.983 | 33.333 | 0.00 | 0.00 | 0.00 | 5.01 |
270 | 271 | 7.023575 | GCAGCTGTTTTATTTATGGGATATCG | 58.976 | 38.462 | 16.64 | 0.00 | 0.00 | 2.92 |
276 | 277 | 4.114794 | GCAGCAGCTGTTTTATTTATGGG | 58.885 | 43.478 | 23.60 | 0.00 | 37.91 | 4.00 |
277 | 278 | 4.114794 | GGCAGCAGCTGTTTTATTTATGG | 58.885 | 43.478 | 23.60 | 0.00 | 41.70 | 2.74 |
279 | 280 | 4.675146 | CGTGGCAGCAGCTGTTTTATTTAT | 60.675 | 41.667 | 23.60 | 0.00 | 41.70 | 1.40 |
280 | 281 | 3.365868 | CGTGGCAGCAGCTGTTTTATTTA | 60.366 | 43.478 | 23.60 | 0.00 | 41.70 | 1.40 |
281 | 282 | 2.607771 | CGTGGCAGCAGCTGTTTTATTT | 60.608 | 45.455 | 23.60 | 0.00 | 41.70 | 1.40 |
282 | 283 | 1.068333 | CGTGGCAGCAGCTGTTTTATT | 60.068 | 47.619 | 23.60 | 0.00 | 41.70 | 1.40 |
304 | 311 | 3.855630 | TTTTTGAACCGGACGCATG | 57.144 | 47.368 | 9.46 | 0.00 | 0.00 | 4.06 |
370 | 382 | 4.035102 | GGTGGGGAGGACTGTGGC | 62.035 | 72.222 | 0.00 | 0.00 | 0.00 | 5.01 |
497 | 509 | 4.096003 | CACAGCCCACGGGGTAGG | 62.096 | 72.222 | 6.48 | 0.00 | 46.51 | 3.18 |
509 | 521 | 2.649129 | GGGATTGGTTGGCCACAGC | 61.649 | 63.158 | 3.88 | 7.60 | 46.01 | 4.40 |
510 | 522 | 2.342650 | CGGGATTGGTTGGCCACAG | 61.343 | 63.158 | 3.88 | 0.00 | 46.01 | 3.66 |
511 | 523 | 2.282816 | CGGGATTGGTTGGCCACA | 60.283 | 61.111 | 3.88 | 0.00 | 46.01 | 4.17 |
955 | 978 | 1.773541 | GGATGGGGGAGGGGATAAAT | 58.226 | 55.000 | 0.00 | 0.00 | 0.00 | 1.40 |
956 | 979 | 0.404346 | GGGATGGGGGAGGGGATAAA | 60.404 | 60.000 | 0.00 | 0.00 | 0.00 | 1.40 |
957 | 980 | 1.244963 | GGGATGGGGGAGGGGATAA | 59.755 | 63.158 | 0.00 | 0.00 | 0.00 | 1.75 |
958 | 981 | 2.824856 | GGGGATGGGGGAGGGGATA | 61.825 | 68.421 | 0.00 | 0.00 | 0.00 | 2.59 |
959 | 982 | 4.223426 | GGGGATGGGGGAGGGGAT | 62.223 | 72.222 | 0.00 | 0.00 | 0.00 | 3.85 |
962 | 985 | 4.556898 | ATGGGGGATGGGGGAGGG | 62.557 | 72.222 | 0.00 | 0.00 | 0.00 | 4.30 |
963 | 986 | 2.371528 | AATGGGGGATGGGGGAGG | 60.372 | 66.667 | 0.00 | 0.00 | 0.00 | 4.30 |
964 | 987 | 1.701024 | TGAATGGGGGATGGGGGAG | 60.701 | 63.158 | 0.00 | 0.00 | 0.00 | 4.30 |
965 | 988 | 2.012210 | GTGAATGGGGGATGGGGGA | 61.012 | 63.158 | 0.00 | 0.00 | 0.00 | 4.81 |
966 | 989 | 2.608759 | GTGAATGGGGGATGGGGG | 59.391 | 66.667 | 0.00 | 0.00 | 0.00 | 5.40 |
967 | 990 | 2.323758 | TGGTGAATGGGGGATGGGG | 61.324 | 63.158 | 0.00 | 0.00 | 0.00 | 4.96 |
971 | 994 | 1.697297 | GTGGTGGTGAATGGGGGAT | 59.303 | 57.895 | 0.00 | 0.00 | 0.00 | 3.85 |
1048 | 1081 | 4.887987 | GATCGCTCCGCTGCTGCT | 62.888 | 66.667 | 14.03 | 0.00 | 36.97 | 4.24 |
1065 | 1098 | 2.493675 | TGGAAGAGAGTTGGTCGATGAG | 59.506 | 50.000 | 0.00 | 0.00 | 0.00 | 2.90 |
1079 | 1112 | 4.377431 | CCGTTGAATCGAAACTTGGAAGAG | 60.377 | 45.833 | 0.00 | 0.00 | 0.00 | 2.85 |
1083 | 1116 | 2.803956 | GTCCGTTGAATCGAAACTTGGA | 59.196 | 45.455 | 0.00 | 0.00 | 0.00 | 3.53 |
1085 | 1118 | 3.870723 | TGTCCGTTGAATCGAAACTTG | 57.129 | 42.857 | 0.00 | 0.00 | 0.00 | 3.16 |
1086 | 1119 | 3.188460 | CCATGTCCGTTGAATCGAAACTT | 59.812 | 43.478 | 0.00 | 0.00 | 0.00 | 2.66 |
1087 | 1120 | 2.742053 | CCATGTCCGTTGAATCGAAACT | 59.258 | 45.455 | 0.00 | 0.00 | 0.00 | 2.66 |
1088 | 1121 | 2.159572 | CCCATGTCCGTTGAATCGAAAC | 60.160 | 50.000 | 0.00 | 0.00 | 0.00 | 2.78 |
1089 | 1122 | 2.080693 | CCCATGTCCGTTGAATCGAAA | 58.919 | 47.619 | 0.00 | 0.00 | 0.00 | 3.46 |
1090 | 1123 | 1.677518 | CCCCATGTCCGTTGAATCGAA | 60.678 | 52.381 | 0.00 | 0.00 | 0.00 | 3.71 |
1091 | 1124 | 0.107897 | CCCCATGTCCGTTGAATCGA | 60.108 | 55.000 | 0.00 | 0.00 | 0.00 | 3.59 |
1092 | 1125 | 0.107897 | TCCCCATGTCCGTTGAATCG | 60.108 | 55.000 | 0.00 | 0.00 | 0.00 | 3.34 |
1093 | 1126 | 1.949525 | CATCCCCATGTCCGTTGAATC | 59.050 | 52.381 | 0.00 | 0.00 | 0.00 | 2.52 |
1094 | 1127 | 2.023788 | GCATCCCCATGTCCGTTGAAT | 61.024 | 52.381 | 0.00 | 0.00 | 31.86 | 2.57 |
1095 | 1128 | 0.679640 | GCATCCCCATGTCCGTTGAA | 60.680 | 55.000 | 0.00 | 0.00 | 31.86 | 2.69 |
1398 | 1570 | 3.043999 | GCCGGTGGCCTTCCAGTAT | 62.044 | 63.158 | 3.32 | 0.00 | 44.48 | 2.12 |
1596 | 1774 | 9.226606 | CCAAATCAACTACTAGTAATCAACCAA | 57.773 | 33.333 | 3.76 | 0.00 | 0.00 | 3.67 |
1598 | 1781 | 8.788325 | ACCAAATCAACTACTAGTAATCAACC | 57.212 | 34.615 | 3.76 | 0.00 | 0.00 | 3.77 |
1602 | 1785 | 8.044908 | TCCCAACCAAATCAACTACTAGTAATC | 58.955 | 37.037 | 3.76 | 0.00 | 0.00 | 1.75 |
1610 | 1797 | 6.208599 | TCTGAAATCCCAACCAAATCAACTAC | 59.791 | 38.462 | 0.00 | 0.00 | 0.00 | 2.73 |
1612 | 1799 | 5.147032 | TCTGAAATCCCAACCAAATCAACT | 58.853 | 37.500 | 0.00 | 0.00 | 0.00 | 3.16 |
1680 | 1887 | 7.395190 | AACAAATTCAGATCGGAATCATCAA | 57.605 | 32.000 | 19.44 | 0.00 | 36.51 | 2.57 |
1685 | 1892 | 7.530010 | TGAAGAAACAAATTCAGATCGGAATC | 58.470 | 34.615 | 19.44 | 8.62 | 40.72 | 2.52 |
1686 | 1893 | 7.452880 | TGAAGAAACAAATTCAGATCGGAAT | 57.547 | 32.000 | 14.44 | 14.44 | 40.72 | 3.01 |
1687 | 1894 | 6.875948 | TGAAGAAACAAATTCAGATCGGAA | 57.124 | 33.333 | 10.79 | 10.79 | 40.72 | 4.30 |
1688 | 1895 | 7.242800 | AGCTGAAGAAACAAATTCAGATCGGA | 61.243 | 38.462 | 16.80 | 0.00 | 46.20 | 4.55 |
1825 | 2032 | 4.735132 | ACCACCATGTCCGACGCG | 62.735 | 66.667 | 3.53 | 3.53 | 0.00 | 6.01 |
1906 | 2113 | 3.702253 | TCGACGATCTCCGACTCG | 58.298 | 61.111 | 0.00 | 0.00 | 41.76 | 4.18 |
2125 | 2338 | 0.553819 | AGTAGAGCAGATCGTCCCCT | 59.446 | 55.000 | 0.00 | 0.00 | 0.00 | 4.79 |
2134 | 2347 | 0.913205 | AGAGGGACGAGTAGAGCAGA | 59.087 | 55.000 | 0.00 | 0.00 | 0.00 | 4.26 |
2146 | 2359 | 3.471806 | GGGGAGGCGAAGAGGGAC | 61.472 | 72.222 | 0.00 | 0.00 | 0.00 | 4.46 |
2230 | 2443 | 1.664873 | TCTCGGTATCTGACGGTCTG | 58.335 | 55.000 | 9.88 | 9.18 | 0.00 | 3.51 |
2242 | 2455 | 2.014857 | CCACTTCTGTCGATCTCGGTA | 58.985 | 52.381 | 0.00 | 0.00 | 40.29 | 4.02 |
2302 | 2517 | 4.368315 | TCCTATGCTGTATTTACACTGCG | 58.632 | 43.478 | 0.00 | 0.00 | 43.89 | 5.18 |
2338 | 2553 | 4.419957 | CTCGACACGACGACGCGA | 62.420 | 66.667 | 15.93 | 7.69 | 43.96 | 5.87 |
2339 | 2554 | 4.419957 | TCTCGACACGACGACGCG | 62.420 | 66.667 | 3.53 | 3.53 | 43.96 | 6.01 |
2595 | 2824 | 1.066430 | GTTCATCCTGCCCGACTACAA | 60.066 | 52.381 | 0.00 | 0.00 | 0.00 | 2.41 |
2598 | 2827 | 0.824109 | CAGTTCATCCTGCCCGACTA | 59.176 | 55.000 | 0.00 | 0.00 | 0.00 | 2.59 |
2599 | 2828 | 1.599047 | CAGTTCATCCTGCCCGACT | 59.401 | 57.895 | 0.00 | 0.00 | 0.00 | 4.18 |
2615 | 2844 | 2.229784 | GACTGACTGAAAAATGGGGCAG | 59.770 | 50.000 | 0.00 | 0.00 | 34.65 | 4.85 |
2650 | 2882 | 2.234335 | GGCAAACAAAACACGGGCG | 61.234 | 57.895 | 0.00 | 0.00 | 0.00 | 6.13 |
2654 | 2886 | 0.179113 | AGGCAGGCAAACAAAACACG | 60.179 | 50.000 | 0.00 | 0.00 | 0.00 | 4.49 |
2660 | 2892 | 1.442567 | CAAGCAGGCAGGCAAACAA | 59.557 | 52.632 | 0.00 | 0.00 | 35.83 | 2.83 |
2732 | 2968 | 1.471119 | TCATAGTGAGTGGACGGTCC | 58.529 | 55.000 | 20.36 | 20.36 | 36.96 | 4.46 |
2748 | 2989 | 4.833478 | AAAGTACTGCCTGTGAGATCAT | 57.167 | 40.909 | 0.00 | 0.00 | 0.00 | 2.45 |
2764 | 3005 | 3.129988 | GCCGCCTAGTCTCAGTAAAAGTA | 59.870 | 47.826 | 0.00 | 0.00 | 0.00 | 2.24 |
2801 | 4398 | 6.364976 | AGTTTAAGTTGTGTTTGTTGCTGTTC | 59.635 | 34.615 | 0.00 | 0.00 | 0.00 | 3.18 |
2824 | 4430 | 4.755123 | CACTGGTTCTATTTTGGTCGAAGT | 59.245 | 41.667 | 0.00 | 0.00 | 0.00 | 3.01 |
2830 | 4436 | 4.278419 | GCTTGTCACTGGTTCTATTTTGGT | 59.722 | 41.667 | 0.00 | 0.00 | 0.00 | 3.67 |
2838 | 4444 | 0.109342 | CCTGGCTTGTCACTGGTTCT | 59.891 | 55.000 | 0.00 | 0.00 | 0.00 | 3.01 |
2849 | 4455 | 4.437587 | CCTCCTGGGCCTGGCTTG | 62.438 | 72.222 | 23.72 | 15.24 | 0.00 | 4.01 |
2915 | 4523 | 1.443407 | CCTGGCTACGCTGCTACAT | 59.557 | 57.895 | 0.00 | 0.00 | 0.00 | 2.29 |
2916 | 4524 | 2.892640 | CCTGGCTACGCTGCTACA | 59.107 | 61.111 | 0.00 | 0.00 | 0.00 | 2.74 |
2967 | 4583 | 1.166129 | TGAGCTCTCGTGTCACTACC | 58.834 | 55.000 | 16.19 | 0.00 | 0.00 | 3.18 |
2968 | 4584 | 2.991434 | TTGAGCTCTCGTGTCACTAC | 57.009 | 50.000 | 16.19 | 0.00 | 0.00 | 2.73 |
2969 | 4585 | 3.759086 | AGATTTGAGCTCTCGTGTCACTA | 59.241 | 43.478 | 16.19 | 0.00 | 0.00 | 2.74 |
2970 | 4586 | 2.560542 | AGATTTGAGCTCTCGTGTCACT | 59.439 | 45.455 | 16.19 | 1.20 | 0.00 | 3.41 |
2971 | 4587 | 2.953020 | AGATTTGAGCTCTCGTGTCAC | 58.047 | 47.619 | 16.19 | 0.00 | 0.00 | 3.67 |
2972 | 4588 | 3.005791 | TCAAGATTTGAGCTCTCGTGTCA | 59.994 | 43.478 | 16.19 | 0.00 | 34.08 | 3.58 |
2973 | 4589 | 3.579709 | TCAAGATTTGAGCTCTCGTGTC | 58.420 | 45.455 | 16.19 | 6.21 | 34.08 | 3.67 |
2974 | 4590 | 3.667497 | TCAAGATTTGAGCTCTCGTGT | 57.333 | 42.857 | 16.19 | 0.00 | 34.08 | 4.49 |
3032 | 4648 | 7.492669 | TCTTCCTGCTATCAGTCTAATTTTTCG | 59.507 | 37.037 | 0.00 | 0.00 | 38.66 | 3.46 |
3050 | 4666 | 8.897752 | ACATCTTAGTATGATTTTTCTTCCTGC | 58.102 | 33.333 | 0.00 | 0.00 | 0.00 | 4.85 |
3062 | 4678 | 4.524714 | CCACCTCCGACATCTTAGTATGAT | 59.475 | 45.833 | 0.00 | 0.00 | 0.00 | 2.45 |
3063 | 4679 | 3.889538 | CCACCTCCGACATCTTAGTATGA | 59.110 | 47.826 | 0.00 | 0.00 | 0.00 | 2.15 |
3064 | 4680 | 3.553096 | GCCACCTCCGACATCTTAGTATG | 60.553 | 52.174 | 0.00 | 0.00 | 0.00 | 2.39 |
3065 | 4681 | 2.628657 | GCCACCTCCGACATCTTAGTAT | 59.371 | 50.000 | 0.00 | 0.00 | 0.00 | 2.12 |
3077 | 4695 | 2.589798 | TTATAAGTTCGCCACCTCCG | 57.410 | 50.000 | 0.00 | 0.00 | 0.00 | 4.63 |
3122 | 4745 | 3.451902 | CCCAACCCAAATGCACATTATCT | 59.548 | 43.478 | 0.00 | 0.00 | 0.00 | 1.98 |
3135 | 4758 | 3.226777 | CACAAATCACTACCCAACCCAA | 58.773 | 45.455 | 0.00 | 0.00 | 0.00 | 4.12 |
3136 | 4759 | 2.489985 | CCACAAATCACTACCCAACCCA | 60.490 | 50.000 | 0.00 | 0.00 | 0.00 | 4.51 |
3137 | 4760 | 2.167662 | CCACAAATCACTACCCAACCC | 58.832 | 52.381 | 0.00 | 0.00 | 0.00 | 4.11 |
3138 | 4761 | 2.817844 | GACCACAAATCACTACCCAACC | 59.182 | 50.000 | 0.00 | 0.00 | 0.00 | 3.77 |
3139 | 4762 | 3.502211 | CAGACCACAAATCACTACCCAAC | 59.498 | 47.826 | 0.00 | 0.00 | 0.00 | 3.77 |
3176 | 4799 | 6.212187 | TGGAGATTCAAGTTCTCTTCATCAGA | 59.788 | 38.462 | 1.19 | 0.00 | 39.65 | 3.27 |
3179 | 4802 | 7.678947 | TTTGGAGATTCAAGTTCTCTTCATC | 57.321 | 36.000 | 1.19 | 0.00 | 39.65 | 2.92 |
3183 | 4806 | 6.836007 | AGGTTTTTGGAGATTCAAGTTCTCTT | 59.164 | 34.615 | 1.19 | 0.00 | 39.65 | 2.85 |
3184 | 4807 | 6.368805 | AGGTTTTTGGAGATTCAAGTTCTCT | 58.631 | 36.000 | 1.19 | 0.00 | 39.65 | 3.10 |
3207 | 4830 | 2.426024 | CCATGATGGCACTTGGAGAAAG | 59.574 | 50.000 | 0.00 | 0.00 | 42.07 | 2.62 |
3241 | 4864 | 7.037586 | ACCATTCTACTCCAAAATCTCCAGTAA | 60.038 | 37.037 | 0.00 | 0.00 | 0.00 | 2.24 |
3244 | 4867 | 5.749462 | ACCATTCTACTCCAAAATCTCCAG | 58.251 | 41.667 | 0.00 | 0.00 | 0.00 | 3.86 |
3246 | 4869 | 6.890293 | ACTACCATTCTACTCCAAAATCTCC | 58.110 | 40.000 | 0.00 | 0.00 | 0.00 | 3.71 |
3268 | 4891 | 6.619801 | AAGACAAAGAAAATGAAGCGTACT | 57.380 | 33.333 | 0.00 | 0.00 | 0.00 | 2.73 |
3269 | 4892 | 8.950403 | ATTAAGACAAAGAAAATGAAGCGTAC | 57.050 | 30.769 | 0.00 | 0.00 | 0.00 | 3.67 |
3271 | 4894 | 8.871686 | AAATTAAGACAAAGAAAATGAAGCGT | 57.128 | 26.923 | 0.00 | 0.00 | 0.00 | 5.07 |
3272 | 4895 | 9.185192 | AGAAATTAAGACAAAGAAAATGAAGCG | 57.815 | 29.630 | 0.00 | 0.00 | 0.00 | 4.68 |
3325 | 4948 | 6.521151 | TTAGTTTAAAGTCGGTAGGAGAGG | 57.479 | 41.667 | 0.00 | 0.00 | 0.00 | 3.69 |
3326 | 4949 | 8.870879 | CATTTTAGTTTAAAGTCGGTAGGAGAG | 58.129 | 37.037 | 0.00 | 0.00 | 0.00 | 3.20 |
3327 | 4950 | 8.587608 | TCATTTTAGTTTAAAGTCGGTAGGAGA | 58.412 | 33.333 | 0.00 | 0.00 | 0.00 | 3.71 |
3328 | 4951 | 8.767478 | TCATTTTAGTTTAAAGTCGGTAGGAG | 57.233 | 34.615 | 0.00 | 0.00 | 0.00 | 3.69 |
3329 | 4952 | 8.992073 | GTTCATTTTAGTTTAAAGTCGGTAGGA | 58.008 | 33.333 | 0.00 | 0.00 | 0.00 | 2.94 |
3330 | 4953 | 8.996271 | AGTTCATTTTAGTTTAAAGTCGGTAGG | 58.004 | 33.333 | 0.00 | 0.00 | 0.00 | 3.18 |
3334 | 4957 | 9.326339 | GCTTAGTTCATTTTAGTTTAAAGTCGG | 57.674 | 33.333 | 0.00 | 0.00 | 0.00 | 4.79 |
3335 | 4958 | 9.037417 | CGCTTAGTTCATTTTAGTTTAAAGTCG | 57.963 | 33.333 | 0.00 | 0.00 | 0.00 | 4.18 |
3345 | 4979 | 5.220416 | CCTTCGGACGCTTAGTTCATTTTAG | 60.220 | 44.000 | 0.00 | 0.00 | 0.00 | 1.85 |
3382 | 5016 | 3.388308 | AGAAATCCGATGATCGAGCAAG | 58.612 | 45.455 | 17.52 | 4.87 | 43.74 | 4.01 |
3383 | 5017 | 3.459232 | AGAAATCCGATGATCGAGCAA | 57.541 | 42.857 | 17.52 | 0.00 | 43.74 | 3.91 |
3384 | 5018 | 3.459232 | AAGAAATCCGATGATCGAGCA | 57.541 | 42.857 | 17.52 | 5.53 | 43.74 | 4.26 |
3385 | 5019 | 4.802876 | AAAAGAAATCCGATGATCGAGC | 57.197 | 40.909 | 17.52 | 0.00 | 43.74 | 5.03 |
3386 | 5020 | 8.006590 | GTGATAAAAAGAAATCCGATGATCGAG | 58.993 | 37.037 | 17.52 | 6.69 | 43.74 | 4.04 |
3387 | 5021 | 7.494298 | TGTGATAAAAAGAAATCCGATGATCGA | 59.506 | 33.333 | 17.52 | 2.86 | 43.74 | 3.59 |
3388 | 5022 | 7.630026 | TGTGATAAAAAGAAATCCGATGATCG | 58.370 | 34.615 | 8.05 | 8.05 | 40.07 | 3.69 |
3391 | 5025 | 9.613428 | ACTATGTGATAAAAAGAAATCCGATGA | 57.387 | 29.630 | 0.00 | 0.00 | 0.00 | 2.92 |
3401 | 5035 | 9.120538 | GGCCATTCTTACTATGTGATAAAAAGA | 57.879 | 33.333 | 0.00 | 0.00 | 0.00 | 2.52 |
3402 | 5036 | 8.070171 | CGGCCATTCTTACTATGTGATAAAAAG | 58.930 | 37.037 | 2.24 | 0.00 | 0.00 | 2.27 |
3403 | 5037 | 7.554835 | ACGGCCATTCTTACTATGTGATAAAAA | 59.445 | 33.333 | 2.24 | 0.00 | 0.00 | 1.94 |
3404 | 5038 | 7.011950 | CACGGCCATTCTTACTATGTGATAAAA | 59.988 | 37.037 | 2.24 | 0.00 | 0.00 | 1.52 |
3405 | 5039 | 6.481976 | CACGGCCATTCTTACTATGTGATAAA | 59.518 | 38.462 | 2.24 | 0.00 | 0.00 | 1.40 |
3406 | 5040 | 5.989168 | CACGGCCATTCTTACTATGTGATAA | 59.011 | 40.000 | 2.24 | 0.00 | 0.00 | 1.75 |
3407 | 5041 | 5.510690 | CCACGGCCATTCTTACTATGTGATA | 60.511 | 44.000 | 2.24 | 0.00 | 0.00 | 2.15 |
3408 | 5042 | 4.380531 | CACGGCCATTCTTACTATGTGAT | 58.619 | 43.478 | 2.24 | 0.00 | 0.00 | 3.06 |
3409 | 5043 | 3.431626 | CCACGGCCATTCTTACTATGTGA | 60.432 | 47.826 | 2.24 | 0.00 | 0.00 | 3.58 |
3410 | 5044 | 2.872245 | CCACGGCCATTCTTACTATGTG | 59.128 | 50.000 | 2.24 | 0.00 | 0.00 | 3.21 |
3411 | 5045 | 2.769663 | TCCACGGCCATTCTTACTATGT | 59.230 | 45.455 | 2.24 | 0.00 | 0.00 | 2.29 |
3412 | 5046 | 3.131396 | GTCCACGGCCATTCTTACTATG | 58.869 | 50.000 | 2.24 | 0.00 | 0.00 | 2.23 |
3413 | 5047 | 3.039011 | AGTCCACGGCCATTCTTACTAT | 58.961 | 45.455 | 2.24 | 0.00 | 0.00 | 2.12 |
3414 | 5048 | 2.429610 | GAGTCCACGGCCATTCTTACTA | 59.570 | 50.000 | 2.24 | 0.00 | 0.00 | 1.82 |
3415 | 5049 | 1.207329 | GAGTCCACGGCCATTCTTACT | 59.793 | 52.381 | 2.24 | 0.00 | 0.00 | 2.24 |
3416 | 5050 | 1.207329 | AGAGTCCACGGCCATTCTTAC | 59.793 | 52.381 | 2.24 | 0.00 | 0.00 | 2.34 |
3417 | 5051 | 1.480954 | GAGAGTCCACGGCCATTCTTA | 59.519 | 52.381 | 2.24 | 0.00 | 0.00 | 2.10 |
3418 | 5052 | 0.250513 | GAGAGTCCACGGCCATTCTT | 59.749 | 55.000 | 2.24 | 0.00 | 0.00 | 2.52 |
3419 | 5053 | 1.901085 | GAGAGTCCACGGCCATTCT | 59.099 | 57.895 | 2.24 | 0.00 | 0.00 | 2.40 |
3420 | 5054 | 1.519455 | CGAGAGTCCACGGCCATTC | 60.519 | 63.158 | 2.24 | 0.00 | 0.00 | 2.67 |
3421 | 5055 | 2.283529 | ACGAGAGTCCACGGCCATT | 61.284 | 57.895 | 2.24 | 0.00 | 44.19 | 3.16 |
3422 | 5056 | 2.680352 | ACGAGAGTCCACGGCCAT | 60.680 | 61.111 | 2.24 | 0.00 | 44.19 | 4.40 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.