Multiple sequence alignment - TraesCS5D01G481200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G481200 chr5D 100.000 2500 0 0 956 3455 519277079 519279578 0.000000e+00 4617.0
1 TraesCS5D01G481200 chr5D 100.000 598 0 0 1 598 519276124 519276721 0.000000e+00 1105.0
2 TraesCS5D01G481200 chr5D 92.821 195 13 1 1 194 342600306 342600500 7.300000e-72 281.0
3 TraesCS5D01G481200 chr5D 92.784 194 11 2 5 195 535008471 535008278 9.440000e-71 278.0
4 TraesCS5D01G481200 chr5D 97.436 78 2 0 3378 3455 510548713 510548790 2.160000e-27 134.0
5 TraesCS5D01G481200 chr5A 88.969 2357 125 48 1100 3382 645726225 645728520 0.000000e+00 2787.0
6 TraesCS5D01G481200 chr5A 87.137 241 20 7 253 483 645725464 645725703 2.640000e-66 263.0
7 TraesCS5D01G481200 chr5B 92.506 1788 84 18 968 2732 653432364 653434124 0.000000e+00 2514.0
8 TraesCS5D01G481200 chr5B 90.230 348 18 8 230 574 653431880 653432214 1.140000e-119 440.0
9 TraesCS5D01G481200 chr5B 81.370 467 32 22 2771 3218 653435524 653435954 2.570000e-86 329.0
10 TraesCS5D01G481200 chr5B 92.929 198 11 2 1 195 229081775 229081972 5.640000e-73 285.0
11 TraesCS5D01G481200 chr6D 84.954 432 56 9 1137 1565 27820295 27819870 2.460000e-116 429.0
12 TraesCS5D01G481200 chr6D 100.000 28 0 0 544 571 9348254 9348281 6.000000e-03 52.8
13 TraesCS5D01G481200 chr6B 85.407 418 54 6 1137 1552 51580406 51579994 8.860000e-116 427.0
14 TraesCS5D01G481200 chr6B 100.000 28 0 0 544 571 455898296 455898323 6.000000e-03 52.8
15 TraesCS5D01G481200 chr6B 100.000 28 0 0 544 571 455898302 455898329 6.000000e-03 52.8
16 TraesCS5D01G481200 chr6B 100.000 28 0 0 544 571 455898308 455898335 6.000000e-03 52.8
17 TraesCS5D01G481200 chr6A 83.850 452 62 10 1106 1555 30191252 30190810 1.480000e-113 420.0
18 TraesCS5D01G481200 chr4A 93.401 197 11 2 1 195 62309851 62309655 1.210000e-74 291.0
19 TraesCS5D01G481200 chr4A 78.605 430 66 15 1160 1573 521919877 521919458 9.510000e-66 261.0
20 TraesCS5D01G481200 chr4A 97.436 78 2 0 3378 3455 490152963 490152886 2.160000e-27 134.0
21 TraesCS5D01G481200 chr3D 92.965 199 10 3 1 195 488121096 488120898 1.570000e-73 287.0
22 TraesCS5D01G481200 chr3D 92.347 196 11 3 4 195 590751950 590751755 3.400000e-70 276.0
23 TraesCS5D01G481200 chr3D 84.871 271 32 8 1325 1589 445037937 445037670 7.350000e-67 265.0
24 TraesCS5D01G481200 chr3D 88.623 167 19 0 1135 1301 445038208 445038042 1.630000e-48 204.0
25 TraesCS5D01G481200 chr2D 92.965 199 10 3 1 195 74970068 74969870 1.570000e-73 287.0
26 TraesCS5D01G481200 chr2D 100.000 28 0 0 544 571 629535255 629535228 6.000000e-03 52.8
27 TraesCS5D01G481200 chr2A 92.462 199 11 3 1 195 729555046 729555244 7.300000e-72 281.0
28 TraesCS5D01G481200 chr2A 91.960 199 12 3 1 195 642587031 642586833 3.400000e-70 276.0
29 TraesCS5D01G481200 chr3B 84.871 271 32 6 1325 1589 583392569 583392302 7.350000e-67 265.0
30 TraesCS5D01G481200 chr3B 88.024 167 20 0 1135 1301 583392880 583392714 7.560000e-47 198.0
31 TraesCS5D01G481200 chr3A 84.133 271 34 6 1325 1589 586422762 586422495 1.590000e-63 254.0
32 TraesCS5D01G481200 chr3A 88.024 167 20 0 1135 1301 586423077 586422911 7.560000e-47 198.0
33 TraesCS5D01G481200 chr3A 96.154 78 3 0 3378 3455 746838990 746839067 1.010000e-25 128.0
34 TraesCS5D01G481200 chr3A 96.154 78 3 0 3378 3455 748076275 748076352 1.010000e-25 128.0
35 TraesCS5D01G481200 chrUn 86.822 129 16 1 1138 1266 240676954 240677081 3.590000e-30 143.0
36 TraesCS5D01G481200 chr1A 96.154 78 3 0 3378 3455 592540211 592540288 1.010000e-25 128.0
37 TraesCS5D01G481200 chr1B 93.243 74 5 0 3382 3455 264859670 264859597 3.650000e-20 110.0
38 TraesCS5D01G481200 chr7D 96.875 32 1 0 544 575 21414030 21413999 2.000000e-03 54.7
39 TraesCS5D01G481200 chr4D 100.000 28 0 0 544 571 504115192 504115219 6.000000e-03 52.8
40 TraesCS5D01G481200 chr4D 100.000 28 0 0 544 571 504115198 504115225 6.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G481200 chr5D 519276124 519279578 3454 False 2861.000000 4617 100.000000 1 3455 2 chr5D.!!$F3 3454
1 TraesCS5D01G481200 chr5A 645725464 645728520 3056 False 1525.000000 2787 88.053000 253 3382 2 chr5A.!!$F1 3129
2 TraesCS5D01G481200 chr5B 653431880 653435954 4074 False 1094.333333 2514 88.035333 230 3218 3 chr5B.!!$F2 2988
3 TraesCS5D01G481200 chr3D 445037670 445038208 538 True 234.500000 265 86.747000 1135 1589 2 chr3D.!!$R3 454
4 TraesCS5D01G481200 chr3B 583392302 583392880 578 True 231.500000 265 86.447500 1135 1589 2 chr3B.!!$R1 454
5 TraesCS5D01G481200 chr3A 586422495 586423077 582 True 226.000000 254 86.078500 1135 1589 2 chr3A.!!$R1 454

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
89 90 0.035152 TTGAAGATGACATGCCGGCT 60.035 50.0 29.7 7.33 0.0 5.52 F
1048 1081 0.035152 AGCCATCGGAATCAACAGCA 60.035 50.0 0.0 0.00 0.0 4.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1091 1124 0.107897 CCCCATGTCCGTTGAATCGA 60.108 55.0 0.0 0.0 0.0 3.59 R
2838 4444 0.109342 CCTGGCTTGTCACTGGTTCT 59.891 55.0 0.0 0.0 0.0 3.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.787249 CCGGCGATGTGCTTTCAG 59.213 61.111 9.30 0.00 45.43 3.02
18 19 2.034879 CCGGCGATGTGCTTTCAGT 61.035 57.895 9.30 0.00 45.43 3.41
19 20 1.133253 CGGCGATGTGCTTTCAGTG 59.867 57.895 0.00 0.00 45.43 3.66
20 21 1.503542 GGCGATGTGCTTTCAGTGG 59.496 57.895 0.00 0.00 45.43 4.00
21 22 1.503542 GCGATGTGCTTTCAGTGGG 59.496 57.895 0.00 0.00 41.73 4.61
22 23 0.955428 GCGATGTGCTTTCAGTGGGA 60.955 55.000 0.00 0.00 41.73 4.37
23 24 1.081892 CGATGTGCTTTCAGTGGGAG 58.918 55.000 0.00 0.00 0.00 4.30
24 25 1.457346 GATGTGCTTTCAGTGGGAGG 58.543 55.000 0.00 0.00 0.00 4.30
25 26 1.003580 GATGTGCTTTCAGTGGGAGGA 59.996 52.381 0.00 0.00 0.00 3.71
26 27 0.397941 TGTGCTTTCAGTGGGAGGAG 59.602 55.000 0.00 0.00 0.00 3.69
27 28 0.687354 GTGCTTTCAGTGGGAGGAGA 59.313 55.000 0.00 0.00 0.00 3.71
28 29 0.687354 TGCTTTCAGTGGGAGGAGAC 59.313 55.000 0.00 0.00 0.00 3.36
29 30 0.390472 GCTTTCAGTGGGAGGAGACG 60.390 60.000 0.00 0.00 0.00 4.18
30 31 0.969894 CTTTCAGTGGGAGGAGACGT 59.030 55.000 0.00 0.00 0.00 4.34
31 32 1.344763 CTTTCAGTGGGAGGAGACGTT 59.655 52.381 0.00 0.00 0.00 3.99
32 33 0.966920 TTCAGTGGGAGGAGACGTTC 59.033 55.000 0.00 0.00 0.00 3.95
55 56 4.883300 GACGACGAGGCGCCTACG 62.883 72.222 32.91 32.91 44.07 3.51
58 59 4.849329 GACGAGGCGCCTACGGTG 62.849 72.222 34.97 23.88 40.57 4.94
60 61 4.849329 CGAGGCGCCTACGGTGAC 62.849 72.222 32.97 14.51 42.50 3.67
63 64 2.508663 GGCGCCTACGGTGACTTC 60.509 66.667 22.15 0.00 38.38 3.01
64 65 2.879462 GCGCCTACGGTGACTTCG 60.879 66.667 0.00 0.00 40.57 3.79
65 66 2.564975 CGCCTACGGTGACTTCGT 59.435 61.111 0.00 0.00 43.64 3.85
66 67 1.796151 CGCCTACGGTGACTTCGTA 59.204 57.895 0.00 0.00 41.38 3.43
67 68 0.168788 CGCCTACGGTGACTTCGTAA 59.831 55.000 0.00 0.00 41.62 3.18
68 69 1.401409 CGCCTACGGTGACTTCGTAAA 60.401 52.381 0.00 0.00 41.62 2.01
69 70 2.733227 CGCCTACGGTGACTTCGTAAAT 60.733 50.000 0.00 0.00 41.62 1.40
70 71 3.256558 GCCTACGGTGACTTCGTAAATT 58.743 45.455 0.00 0.00 41.62 1.82
71 72 3.681417 GCCTACGGTGACTTCGTAAATTT 59.319 43.478 0.00 0.00 41.62 1.82
72 73 4.435121 GCCTACGGTGACTTCGTAAATTTG 60.435 45.833 0.00 0.00 41.62 2.32
73 74 4.925054 CCTACGGTGACTTCGTAAATTTGA 59.075 41.667 0.00 0.00 41.62 2.69
74 75 5.406175 CCTACGGTGACTTCGTAAATTTGAA 59.594 40.000 0.00 0.00 41.62 2.69
75 76 5.338614 ACGGTGACTTCGTAAATTTGAAG 57.661 39.130 13.85 13.85 45.53 3.02
76 77 5.051816 ACGGTGACTTCGTAAATTTGAAGA 58.948 37.500 19.66 6.62 43.34 2.87
77 78 5.699458 ACGGTGACTTCGTAAATTTGAAGAT 59.301 36.000 19.66 8.35 43.34 2.40
78 79 6.015504 CGGTGACTTCGTAAATTTGAAGATG 58.984 40.000 19.66 11.87 43.34 2.90
79 80 6.128661 CGGTGACTTCGTAAATTTGAAGATGA 60.129 38.462 19.66 1.78 43.34 2.92
80 81 7.015877 GGTGACTTCGTAAATTTGAAGATGAC 58.984 38.462 19.66 13.44 43.34 3.06
81 82 7.307751 GGTGACTTCGTAAATTTGAAGATGACA 60.308 37.037 19.66 12.42 43.34 3.58
82 83 8.230486 GTGACTTCGTAAATTTGAAGATGACAT 58.770 33.333 19.66 0.00 43.34 3.06
83 84 8.229811 TGACTTCGTAAATTTGAAGATGACATG 58.770 33.333 19.66 0.00 43.34 3.21
84 85 7.023575 ACTTCGTAAATTTGAAGATGACATGC 58.976 34.615 19.66 0.00 43.34 4.06
85 86 5.879237 TCGTAAATTTGAAGATGACATGCC 58.121 37.500 0.00 0.00 0.00 4.40
86 87 4.730042 CGTAAATTTGAAGATGACATGCCG 59.270 41.667 0.00 0.00 0.00 5.69
87 88 3.788333 AATTTGAAGATGACATGCCGG 57.212 42.857 0.00 0.00 0.00 6.13
88 89 0.810648 TTTGAAGATGACATGCCGGC 59.189 50.000 22.73 22.73 0.00 6.13
89 90 0.035152 TTGAAGATGACATGCCGGCT 60.035 50.000 29.70 7.33 0.00 5.52
90 91 0.462581 TGAAGATGACATGCCGGCTC 60.463 55.000 29.70 17.89 0.00 4.70
91 92 0.462581 GAAGATGACATGCCGGCTCA 60.463 55.000 29.70 23.34 0.00 4.26
92 93 0.463295 AAGATGACATGCCGGCTCAG 60.463 55.000 29.70 19.20 0.00 3.35
93 94 2.515523 ATGACATGCCGGCTCAGC 60.516 61.111 29.70 15.07 0.00 4.26
94 95 4.783621 TGACATGCCGGCTCAGCC 62.784 66.667 29.70 5.22 46.75 4.85
103 104 2.124942 GGCTCAGCCTTTCGGAGG 60.125 66.667 9.09 1.83 46.69 4.30
111 112 3.558674 CCTTTCGGAGGTGCTCATT 57.441 52.632 0.00 0.00 40.95 2.57
112 113 1.089920 CCTTTCGGAGGTGCTCATTG 58.910 55.000 0.00 0.00 40.95 2.82
113 114 1.089920 CTTTCGGAGGTGCTCATTGG 58.910 55.000 0.00 0.00 31.08 3.16
114 115 0.690192 TTTCGGAGGTGCTCATTGGA 59.310 50.000 0.00 0.00 31.08 3.53
115 116 0.911769 TTCGGAGGTGCTCATTGGAT 59.088 50.000 0.00 0.00 31.08 3.41
116 117 1.788229 TCGGAGGTGCTCATTGGATA 58.212 50.000 0.00 0.00 31.08 2.59
117 118 1.688735 TCGGAGGTGCTCATTGGATAG 59.311 52.381 0.00 0.00 31.08 2.08
118 119 1.270518 CGGAGGTGCTCATTGGATAGG 60.271 57.143 0.00 0.00 31.08 2.57
119 120 1.072965 GGAGGTGCTCATTGGATAGGG 59.927 57.143 0.00 0.00 31.08 3.53
120 121 1.771255 GAGGTGCTCATTGGATAGGGT 59.229 52.381 0.00 0.00 0.00 4.34
121 122 1.492176 AGGTGCTCATTGGATAGGGTG 59.508 52.381 0.00 0.00 0.00 4.61
122 123 1.212935 GGTGCTCATTGGATAGGGTGT 59.787 52.381 0.00 0.00 0.00 4.16
123 124 2.292267 GTGCTCATTGGATAGGGTGTG 58.708 52.381 0.00 0.00 0.00 3.82
124 125 1.312815 GCTCATTGGATAGGGTGTGC 58.687 55.000 0.00 0.00 0.00 4.57
125 126 1.586422 CTCATTGGATAGGGTGTGCG 58.414 55.000 0.00 0.00 0.00 5.34
126 127 0.908910 TCATTGGATAGGGTGTGCGT 59.091 50.000 0.00 0.00 0.00 5.24
127 128 1.016627 CATTGGATAGGGTGTGCGTG 58.983 55.000 0.00 0.00 0.00 5.34
128 129 0.618458 ATTGGATAGGGTGTGCGTGT 59.382 50.000 0.00 0.00 0.00 4.49
129 130 0.321210 TTGGATAGGGTGTGCGTGTG 60.321 55.000 0.00 0.00 0.00 3.82
130 131 1.295423 GGATAGGGTGTGCGTGTGT 59.705 57.895 0.00 0.00 0.00 3.72
131 132 1.019278 GGATAGGGTGTGCGTGTGTG 61.019 60.000 0.00 0.00 0.00 3.82
132 133 0.320421 GATAGGGTGTGCGTGTGTGT 60.320 55.000 0.00 0.00 0.00 3.72
133 134 0.107831 ATAGGGTGTGCGTGTGTGTT 59.892 50.000 0.00 0.00 0.00 3.32
134 135 0.531090 TAGGGTGTGCGTGTGTGTTC 60.531 55.000 0.00 0.00 0.00 3.18
135 136 2.109739 GGGTGTGCGTGTGTGTTCA 61.110 57.895 0.00 0.00 0.00 3.18
136 137 1.444119 GGGTGTGCGTGTGTGTTCAT 61.444 55.000 0.00 0.00 0.00 2.57
137 138 1.222300 GGTGTGCGTGTGTGTTCATA 58.778 50.000 0.00 0.00 0.00 2.15
138 139 1.600013 GGTGTGCGTGTGTGTTCATAA 59.400 47.619 0.00 0.00 0.00 1.90
139 140 2.349438 GGTGTGCGTGTGTGTTCATAAG 60.349 50.000 0.00 0.00 0.00 1.73
140 141 1.870402 TGTGCGTGTGTGTTCATAAGG 59.130 47.619 0.00 0.00 0.00 2.69
141 142 2.139917 GTGCGTGTGTGTTCATAAGGA 58.860 47.619 0.00 0.00 0.00 3.36
142 143 2.742053 GTGCGTGTGTGTTCATAAGGAT 59.258 45.455 0.00 0.00 0.00 3.24
143 144 2.741517 TGCGTGTGTGTTCATAAGGATG 59.258 45.455 0.00 0.00 0.00 3.51
144 145 3.000041 GCGTGTGTGTTCATAAGGATGA 59.000 45.455 0.00 0.00 40.45 2.92
145 146 3.062639 GCGTGTGTGTTCATAAGGATGAG 59.937 47.826 0.00 0.00 43.03 2.90
146 147 4.245660 CGTGTGTGTTCATAAGGATGAGT 58.754 43.478 0.00 0.00 43.03 3.41
147 148 5.407502 CGTGTGTGTTCATAAGGATGAGTA 58.592 41.667 0.00 0.00 43.03 2.59
148 149 6.042777 CGTGTGTGTTCATAAGGATGAGTAT 58.957 40.000 0.00 0.00 43.03 2.12
149 150 7.200455 CGTGTGTGTTCATAAGGATGAGTATA 58.800 38.462 0.00 0.00 43.03 1.47
150 151 7.867909 CGTGTGTGTTCATAAGGATGAGTATAT 59.132 37.037 0.00 0.00 43.03 0.86
151 152 8.982685 GTGTGTGTTCATAAGGATGAGTATATG 58.017 37.037 0.00 0.00 43.03 1.78
152 153 7.657354 TGTGTGTTCATAAGGATGAGTATATGC 59.343 37.037 0.00 0.00 43.03 3.14
153 154 6.868339 TGTGTTCATAAGGATGAGTATATGCG 59.132 38.462 0.00 0.00 43.03 4.73
154 155 5.869344 TGTTCATAAGGATGAGTATATGCGC 59.131 40.000 0.00 0.00 43.03 6.09
155 156 4.672409 TCATAAGGATGAGTATATGCGCG 58.328 43.478 0.00 0.00 37.15 6.86
156 157 4.157840 TCATAAGGATGAGTATATGCGCGT 59.842 41.667 8.43 7.55 37.15 6.01
157 158 5.355910 TCATAAGGATGAGTATATGCGCGTA 59.644 40.000 12.53 12.53 37.15 4.42
158 159 4.720649 AAGGATGAGTATATGCGCGTAT 57.279 40.909 24.52 24.52 0.00 3.06
159 160 4.033990 AGGATGAGTATATGCGCGTATG 57.966 45.455 28.29 0.00 0.00 2.39
160 161 3.444034 AGGATGAGTATATGCGCGTATGT 59.556 43.478 28.29 15.87 0.00 2.29
161 162 4.638865 AGGATGAGTATATGCGCGTATGTA 59.361 41.667 28.29 14.73 0.00 2.29
162 163 5.299531 AGGATGAGTATATGCGCGTATGTAT 59.700 40.000 28.29 17.24 0.00 2.29
163 164 5.399596 GGATGAGTATATGCGCGTATGTATG 59.600 44.000 28.29 0.00 0.00 2.39
164 165 5.554822 TGAGTATATGCGCGTATGTATGA 57.445 39.130 28.29 8.51 0.00 2.15
165 166 5.569413 TGAGTATATGCGCGTATGTATGAG 58.431 41.667 28.29 0.00 0.00 2.90
166 167 4.352039 AGTATATGCGCGTATGTATGAGC 58.648 43.478 28.29 5.65 38.31 4.26
169 170 4.228451 CGCGTATGTATGAGCGCT 57.772 55.556 11.27 11.27 46.56 5.92
170 171 2.506544 CGCGTATGTATGAGCGCTT 58.493 52.632 13.26 0.00 46.56 4.68
171 172 0.159554 CGCGTATGTATGAGCGCTTG 59.840 55.000 13.26 0.00 46.56 4.01
172 173 0.111089 GCGTATGTATGAGCGCTTGC 60.111 55.000 13.26 0.00 45.48 4.01
173 174 0.159554 CGTATGTATGAGCGCTTGCG 59.840 55.000 13.26 10.90 45.69 4.85
174 175 1.209128 GTATGTATGAGCGCTTGCGT 58.791 50.000 13.26 3.97 45.69 5.24
175 176 1.190323 GTATGTATGAGCGCTTGCGTC 59.810 52.381 13.26 12.36 45.69 5.19
176 177 0.179100 ATGTATGAGCGCTTGCGTCT 60.179 50.000 13.26 13.17 45.69 4.18
177 178 0.454196 TGTATGAGCGCTTGCGTCTA 59.546 50.000 13.26 3.62 45.69 2.59
178 179 1.067060 TGTATGAGCGCTTGCGTCTAT 59.933 47.619 13.26 10.15 45.69 1.98
179 180 2.292292 TGTATGAGCGCTTGCGTCTATA 59.708 45.455 13.26 9.29 45.69 1.31
180 181 1.772182 ATGAGCGCTTGCGTCTATAC 58.228 50.000 13.26 0.00 45.69 1.47
181 182 0.738975 TGAGCGCTTGCGTCTATACT 59.261 50.000 13.26 3.73 45.69 2.12
182 183 1.124462 GAGCGCTTGCGTCTATACTG 58.876 55.000 13.26 0.00 45.69 2.74
183 184 0.738975 AGCGCTTGCGTCTATACTGA 59.261 50.000 16.38 0.00 45.69 3.41
184 185 1.338337 AGCGCTTGCGTCTATACTGAT 59.662 47.619 16.38 0.00 45.69 2.90
185 186 1.453524 GCGCTTGCGTCTATACTGATG 59.546 52.381 16.38 0.00 0.00 3.07
186 187 2.732366 CGCTTGCGTCTATACTGATGT 58.268 47.619 6.86 0.00 0.00 3.06
187 188 3.116300 CGCTTGCGTCTATACTGATGTT 58.884 45.455 6.86 0.00 0.00 2.71
188 189 4.287720 CGCTTGCGTCTATACTGATGTTA 58.712 43.478 6.86 0.00 0.00 2.41
189 190 4.738252 CGCTTGCGTCTATACTGATGTTAA 59.262 41.667 6.86 0.00 0.00 2.01
190 191 5.231357 CGCTTGCGTCTATACTGATGTTAAA 59.769 40.000 6.86 0.00 0.00 1.52
191 192 6.237728 CGCTTGCGTCTATACTGATGTTAAAA 60.238 38.462 6.86 0.00 0.00 1.52
192 193 7.461107 GCTTGCGTCTATACTGATGTTAAAAA 58.539 34.615 0.00 0.00 0.00 1.94
215 216 7.639113 AAAATTGCCCGATAAGTAAATCAGA 57.361 32.000 0.00 0.00 0.00 3.27
216 217 7.639113 AAATTGCCCGATAAGTAAATCAGAA 57.361 32.000 0.00 0.00 0.00 3.02
217 218 6.867662 ATTGCCCGATAAGTAAATCAGAAG 57.132 37.500 0.00 0.00 0.00 2.85
218 219 5.607939 TGCCCGATAAGTAAATCAGAAGA 57.392 39.130 0.00 0.00 0.00 2.87
219 220 5.984725 TGCCCGATAAGTAAATCAGAAGAA 58.015 37.500 0.00 0.00 0.00 2.52
220 221 6.411376 TGCCCGATAAGTAAATCAGAAGAAA 58.589 36.000 0.00 0.00 0.00 2.52
221 222 6.882140 TGCCCGATAAGTAAATCAGAAGAAAA 59.118 34.615 0.00 0.00 0.00 2.29
222 223 7.148306 TGCCCGATAAGTAAATCAGAAGAAAAC 60.148 37.037 0.00 0.00 0.00 2.43
223 224 7.399523 CCCGATAAGTAAATCAGAAGAAAACG 58.600 38.462 0.00 0.00 0.00 3.60
224 225 7.277098 CCCGATAAGTAAATCAGAAGAAAACGA 59.723 37.037 0.00 0.00 0.00 3.85
225 226 8.818057 CCGATAAGTAAATCAGAAGAAAACGAT 58.182 33.333 0.00 0.00 0.00 3.73
226 227 9.625009 CGATAAGTAAATCAGAAGAAAACGATG 57.375 33.333 0.00 0.00 0.00 3.84
227 228 9.922305 GATAAGTAAATCAGAAGAAAACGATGG 57.078 33.333 0.00 0.00 0.00 3.51
228 229 7.745620 AAGTAAATCAGAAGAAAACGATGGT 57.254 32.000 0.00 0.00 0.00 3.55
233 234 7.687941 AATCAGAAGAAAACGATGGTGTAAT 57.312 32.000 0.00 0.00 0.00 1.89
236 237 6.072728 TCAGAAGAAAACGATGGTGTAATTGG 60.073 38.462 0.00 0.00 0.00 3.16
270 271 7.743520 TTTTCTCACAATTTTGGTTTCGTAC 57.256 32.000 0.00 0.00 0.00 3.67
276 277 7.457868 TCACAATTTTGGTTTCGTACGATATC 58.542 34.615 20.27 15.40 0.00 1.63
277 278 6.685403 CACAATTTTGGTTTCGTACGATATCC 59.315 38.462 20.27 19.95 0.00 2.59
279 280 4.468765 TTTGGTTTCGTACGATATCCCA 57.531 40.909 20.27 18.11 0.00 4.37
280 281 4.675976 TTGGTTTCGTACGATATCCCAT 57.324 40.909 20.27 0.00 0.00 4.00
281 282 5.787953 TTGGTTTCGTACGATATCCCATA 57.212 39.130 20.27 10.12 0.00 2.74
282 283 5.787953 TGGTTTCGTACGATATCCCATAA 57.212 39.130 20.27 4.65 0.00 1.90
294 295 8.099364 ACGATATCCCATAAATAAAACAGCTG 57.901 34.615 13.48 13.48 0.00 4.24
304 311 2.063541 AAAACAGCTGCTGCCACGAC 62.064 55.000 28.39 0.00 40.80 4.34
496 508 3.124921 CCATGACGCAACCCCGAC 61.125 66.667 0.00 0.00 0.00 4.79
497 509 3.124921 CATGACGCAACCCCGACC 61.125 66.667 0.00 0.00 0.00 4.79
500 512 3.384532 GACGCAACCCCGACCCTA 61.385 66.667 0.00 0.00 0.00 3.53
503 515 4.105553 GCAACCCCGACCCTACCC 62.106 72.222 0.00 0.00 0.00 3.69
504 516 3.405318 CAACCCCGACCCTACCCC 61.405 72.222 0.00 0.00 0.00 4.95
1046 1079 1.742761 ACAGCCATCGGAATCAACAG 58.257 50.000 0.00 0.00 0.00 3.16
1047 1080 0.379669 CAGCCATCGGAATCAACAGC 59.620 55.000 0.00 0.00 0.00 4.40
1048 1081 0.035152 AGCCATCGGAATCAACAGCA 60.035 50.000 0.00 0.00 0.00 4.41
1083 1116 4.647424 GATCTCATCGACCAACTCTCTT 57.353 45.455 0.00 0.00 0.00 2.85
1085 1118 2.755655 TCTCATCGACCAACTCTCTTCC 59.244 50.000 0.00 0.00 0.00 3.46
1086 1119 2.493675 CTCATCGACCAACTCTCTTCCA 59.506 50.000 0.00 0.00 0.00 3.53
1087 1120 2.897326 TCATCGACCAACTCTCTTCCAA 59.103 45.455 0.00 0.00 0.00 3.53
1088 1121 3.056536 TCATCGACCAACTCTCTTCCAAG 60.057 47.826 0.00 0.00 0.00 3.61
1089 1122 2.317040 TCGACCAACTCTCTTCCAAGT 58.683 47.619 0.00 0.00 0.00 3.16
1090 1123 2.698797 TCGACCAACTCTCTTCCAAGTT 59.301 45.455 0.00 0.00 36.16 2.66
1091 1124 3.134081 TCGACCAACTCTCTTCCAAGTTT 59.866 43.478 0.00 0.00 33.53 2.66
1092 1125 3.495001 CGACCAACTCTCTTCCAAGTTTC 59.505 47.826 0.00 0.00 33.53 2.78
1093 1126 3.467803 ACCAACTCTCTTCCAAGTTTCG 58.532 45.455 0.00 0.00 33.53 3.46
1094 1127 3.134081 ACCAACTCTCTTCCAAGTTTCGA 59.866 43.478 0.00 0.00 33.53 3.71
1095 1128 4.202367 ACCAACTCTCTTCCAAGTTTCGAT 60.202 41.667 0.00 0.00 33.53 3.59
1593 1771 1.471153 GGCTCGCTCAGGGTAAGTTAC 60.471 57.143 4.32 4.32 0.00 2.50
1595 1773 2.686915 GCTCGCTCAGGGTAAGTTACTA 59.313 50.000 12.65 0.00 0.00 1.82
1596 1774 3.318557 GCTCGCTCAGGGTAAGTTACTAT 59.681 47.826 12.65 0.00 0.00 2.12
1598 1781 5.258456 TCGCTCAGGGTAAGTTACTATTG 57.742 43.478 12.65 8.74 0.00 1.90
1602 1785 5.585047 GCTCAGGGTAAGTTACTATTGGTTG 59.415 44.000 12.65 2.51 0.00 3.77
1680 1887 5.125900 TGATTGATTGATTCGGTGCTGATTT 59.874 36.000 0.00 0.00 0.00 2.17
1685 1892 4.359971 TGATTCGGTGCTGATTTTGATG 57.640 40.909 0.00 0.00 0.00 3.07
1686 1893 4.009002 TGATTCGGTGCTGATTTTGATGA 58.991 39.130 0.00 0.00 0.00 2.92
1687 1894 4.641541 TGATTCGGTGCTGATTTTGATGAT 59.358 37.500 0.00 0.00 0.00 2.45
1688 1895 5.125900 TGATTCGGTGCTGATTTTGATGATT 59.874 36.000 0.00 0.00 0.00 2.57
1815 2022 0.920763 ATGATGGTGGAGCCCAAGGA 60.921 55.000 0.00 0.00 38.20 3.36
1820 2027 3.011517 TGGAGCCCAAGGAGGAGC 61.012 66.667 0.00 0.00 41.22 4.70
1823 2030 3.672295 GAGCCCAAGGAGGAGCACG 62.672 68.421 0.00 0.00 41.22 5.34
1825 2032 4.785453 CCCAAGGAGGAGCACGCC 62.785 72.222 0.00 0.00 41.22 5.68
1885 2092 2.807045 CAGTCGCACTCGCACTCC 60.807 66.667 0.00 0.00 38.40 3.85
2125 2338 2.202919 CTCGACATGATGCCGCCA 60.203 61.111 0.00 0.00 0.00 5.69
2146 2359 0.589223 GGGACGATCTGCTCTACTCG 59.411 60.000 0.00 0.00 37.17 4.18
2164 2377 4.005978 TCCCTCTTCGCCTCCCCA 62.006 66.667 0.00 0.00 0.00 4.96
2165 2378 3.009115 CCCTCTTCGCCTCCCCAA 61.009 66.667 0.00 0.00 0.00 4.12
2230 2443 2.739379 GTTCTAAGCAGAGCCAAGACAC 59.261 50.000 0.00 0.00 30.73 3.67
2242 2455 1.273606 CCAAGACACAGACCGTCAGAT 59.726 52.381 0.40 0.00 35.77 2.90
2338 2553 0.342313 ATAGGAAACGGGAGGGAGGT 59.658 55.000 0.00 0.00 0.00 3.85
2339 2554 0.325016 TAGGAAACGGGAGGGAGGTC 60.325 60.000 0.00 0.00 0.00 3.85
2583 2812 4.142988 CCAAATTTTGCTGTTATGCTGCTG 60.143 41.667 3.50 0.00 41.79 4.41
2584 2813 2.068837 TTTTGCTGTTATGCTGCTGC 57.931 45.000 8.89 8.89 41.79 5.25
2585 2814 1.250328 TTTGCTGTTATGCTGCTGCT 58.750 45.000 17.00 5.09 41.79 4.24
2586 2815 0.806868 TTGCTGTTATGCTGCTGCTC 59.193 50.000 17.00 5.60 41.79 4.26
2587 2816 0.035725 TGCTGTTATGCTGCTGCTCT 60.036 50.000 17.00 6.78 41.79 4.09
2588 2817 1.207811 TGCTGTTATGCTGCTGCTCTA 59.792 47.619 17.00 5.82 41.79 2.43
2589 2818 1.596727 GCTGTTATGCTGCTGCTCTAC 59.403 52.381 17.00 11.32 40.48 2.59
2595 2824 2.276732 TGCTGCTGCTCTACCTTTTT 57.723 45.000 17.00 0.00 40.48 1.94
2615 2844 0.535335 TGTAGTCGGGCAGGATGAAC 59.465 55.000 0.00 0.00 39.69 3.18
2654 2886 4.220821 TCAGTCTGATCTAATAATCCGCCC 59.779 45.833 0.00 0.00 0.00 6.13
2660 2892 3.547054 TCTAATAATCCGCCCGTGTTT 57.453 42.857 0.00 0.00 0.00 2.83
2748 2989 1.676635 CCGGACCGTCCACTCACTA 60.677 63.158 17.87 0.00 35.91 2.74
2764 3005 3.369175 TCACTATGATCTCACAGGCAGT 58.631 45.455 0.00 0.00 0.00 4.40
2801 4398 0.801067 GCGGCAGTGACCTTACTACG 60.801 60.000 0.00 0.00 35.01 3.51
2824 4430 5.343593 CGAACAGCAACAAACACAACTTAAA 59.656 36.000 0.00 0.00 0.00 1.52
2830 4436 5.569823 GCAACAAACACAACTTAAACTTCGA 59.430 36.000 0.00 0.00 0.00 3.71
2838 4444 7.987649 ACACAACTTAAACTTCGACCAAAATA 58.012 30.769 0.00 0.00 0.00 1.40
2849 4455 4.312443 TCGACCAAAATAGAACCAGTGAC 58.688 43.478 0.00 0.00 0.00 3.67
2915 4523 2.573009 TCATCCTGCCTGACATCAGAAA 59.427 45.455 10.55 0.00 46.59 2.52
2916 4524 3.201487 TCATCCTGCCTGACATCAGAAAT 59.799 43.478 10.55 0.00 46.59 2.17
2967 4583 0.163788 CGCGTACAAGAAGTGCAAGG 59.836 55.000 0.00 0.00 32.52 3.61
2968 4584 0.517316 GCGTACAAGAAGTGCAAGGG 59.483 55.000 0.00 0.00 32.52 3.95
2969 4585 1.878953 CGTACAAGAAGTGCAAGGGT 58.121 50.000 0.00 0.00 32.52 4.34
2970 4586 2.868839 GCGTACAAGAAGTGCAAGGGTA 60.869 50.000 0.00 0.00 32.52 3.69
2971 4587 2.993899 CGTACAAGAAGTGCAAGGGTAG 59.006 50.000 0.00 0.00 32.52 3.18
2972 4588 3.554337 CGTACAAGAAGTGCAAGGGTAGT 60.554 47.826 0.00 0.00 32.52 2.73
2973 4589 2.851195 ACAAGAAGTGCAAGGGTAGTG 58.149 47.619 0.00 0.00 0.00 2.74
2974 4590 2.438021 ACAAGAAGTGCAAGGGTAGTGA 59.562 45.455 0.00 0.00 0.00 3.41
2975 4591 2.808543 CAAGAAGTGCAAGGGTAGTGAC 59.191 50.000 0.00 0.00 0.00 3.67
2976 4592 2.047061 AGAAGTGCAAGGGTAGTGACA 58.953 47.619 0.00 0.00 0.00 3.58
2977 4593 2.143925 GAAGTGCAAGGGTAGTGACAC 58.856 52.381 0.00 0.00 0.00 3.67
2978 4594 0.033504 AGTGCAAGGGTAGTGACACG 59.966 55.000 0.00 0.00 32.50 4.49
2979 4595 0.032952 GTGCAAGGGTAGTGACACGA 59.967 55.000 0.00 0.00 32.50 4.35
2993 4609 3.122613 GTGACACGAGAGCTCAAATCTTG 59.877 47.826 17.77 11.07 34.79 3.02
3032 4648 6.662414 TTTGGATAAATCGACACAGATCAC 57.338 37.500 0.00 0.00 0.00 3.06
3050 4666 9.307121 ACAGATCACGAAAAATTAGACTGATAG 57.693 33.333 0.00 0.00 0.00 2.08
3062 4678 9.520515 AAATTAGACTGATAGCAGGAAGAAAAA 57.479 29.630 13.45 0.00 46.60 1.94
3063 4679 9.692325 AATTAGACTGATAGCAGGAAGAAAAAT 57.308 29.630 13.45 0.00 46.60 1.82
3064 4680 8.723942 TTAGACTGATAGCAGGAAGAAAAATC 57.276 34.615 13.45 0.00 46.60 2.17
3065 4681 6.715280 AGACTGATAGCAGGAAGAAAAATCA 58.285 36.000 13.45 0.00 46.60 2.57
3094 4712 0.175073 GTCGGAGGTGGCGAACTTAT 59.825 55.000 0.00 0.00 0.00 1.73
3139 4762 9.234827 TGAATATAGAGATAATGTGCATTTGGG 57.765 33.333 2.56 0.00 32.50 4.12
3175 4798 2.111384 TGGTCTGCCCAAGATCTAGTC 58.889 52.381 0.00 0.00 41.50 2.59
3176 4799 2.292521 TGGTCTGCCCAAGATCTAGTCT 60.293 50.000 0.00 0.00 41.50 3.24
3179 4802 3.068024 GTCTGCCCAAGATCTAGTCTCTG 59.932 52.174 0.00 0.00 37.23 3.35
3183 4806 3.894427 GCCCAAGATCTAGTCTCTGATGA 59.106 47.826 0.00 0.00 35.67 2.92
3184 4807 4.343526 GCCCAAGATCTAGTCTCTGATGAA 59.656 45.833 0.00 0.00 35.67 2.57
3207 4830 6.641169 AGAGAACTTGAATCTCCAAAAACC 57.359 37.500 0.17 0.00 43.52 3.27
3241 4864 3.261643 GCCATCATGGGGTCTTTCTTTTT 59.738 43.478 5.62 0.00 38.19 1.94
3268 4891 6.443849 ACTGGAGATTTTGGAGTAGAATGGTA 59.556 38.462 0.00 0.00 0.00 3.25
3269 4892 6.889198 TGGAGATTTTGGAGTAGAATGGTAG 58.111 40.000 0.00 0.00 0.00 3.18
3271 4894 7.622081 TGGAGATTTTGGAGTAGAATGGTAGTA 59.378 37.037 0.00 0.00 0.00 1.82
3272 4895 7.927092 GGAGATTTTGGAGTAGAATGGTAGTAC 59.073 40.741 0.00 0.00 0.00 2.73
3273 4896 7.490000 AGATTTTGGAGTAGAATGGTAGTACG 58.510 38.462 0.00 0.00 0.00 3.67
3280 4903 6.461231 GGAGTAGAATGGTAGTACGCTTCATT 60.461 42.308 13.06 8.51 33.40 2.57
3283 4906 6.663944 AGAATGGTAGTACGCTTCATTTTC 57.336 37.500 13.06 1.56 32.02 2.29
3288 4911 5.761234 TGGTAGTACGCTTCATTTTCTTTGT 59.239 36.000 0.00 0.00 0.00 2.83
3331 4954 3.771577 TTTGAGAACTTGGTCCTCTCC 57.228 47.619 3.96 0.00 35.70 3.71
3332 4955 2.704190 TGAGAACTTGGTCCTCTCCT 57.296 50.000 3.96 0.00 35.70 3.69
3333 4956 3.827817 TGAGAACTTGGTCCTCTCCTA 57.172 47.619 3.96 0.00 35.70 2.94
3334 4957 3.432378 TGAGAACTTGGTCCTCTCCTAC 58.568 50.000 3.96 0.00 35.70 3.18
3335 4958 2.761767 GAGAACTTGGTCCTCTCCTACC 59.238 54.545 0.00 0.00 36.24 3.18
3345 4979 4.381398 GGTCCTCTCCTACCGACTTTAAAC 60.381 50.000 0.00 0.00 0.00 2.01
3365 4999 5.526010 AACTAAAATGAACTAAGCGTCCG 57.474 39.130 0.00 0.00 0.00 4.79
3385 5019 4.404507 CGAAGGGTGTTACACAATCTTG 57.595 45.455 17.67 8.43 35.86 3.02
3386 5020 3.364964 CGAAGGGTGTTACACAATCTTGC 60.365 47.826 17.67 9.86 35.86 4.01
3387 5021 3.508845 AGGGTGTTACACAATCTTGCT 57.491 42.857 17.67 0.00 35.86 3.91
3388 5022 3.412386 AGGGTGTTACACAATCTTGCTC 58.588 45.455 17.67 0.00 35.86 4.26
3389 5023 2.159627 GGGTGTTACACAATCTTGCTCG 59.840 50.000 17.67 0.00 35.86 5.03
3390 5024 3.064207 GGTGTTACACAATCTTGCTCGA 58.936 45.455 17.67 0.00 35.86 4.04
3391 5025 3.684788 GGTGTTACACAATCTTGCTCGAT 59.315 43.478 17.67 0.00 35.86 3.59
3392 5026 4.201724 GGTGTTACACAATCTTGCTCGATC 60.202 45.833 17.67 0.00 35.86 3.69
3393 5027 4.388773 GTGTTACACAATCTTGCTCGATCA 59.611 41.667 10.96 0.00 34.08 2.92
3394 5028 5.063944 GTGTTACACAATCTTGCTCGATCAT 59.936 40.000 10.96 0.00 34.08 2.45
3395 5029 5.291858 TGTTACACAATCTTGCTCGATCATC 59.708 40.000 0.00 0.00 0.00 2.92
3396 5030 2.862536 ACACAATCTTGCTCGATCATCG 59.137 45.455 0.00 0.00 42.10 3.84
3397 5031 2.220363 CACAATCTTGCTCGATCATCGG 59.780 50.000 7.33 0.00 40.88 4.18
3398 5032 2.101415 ACAATCTTGCTCGATCATCGGA 59.899 45.455 7.33 0.00 40.88 4.55
3399 5033 3.244009 ACAATCTTGCTCGATCATCGGAT 60.244 43.478 7.33 0.00 40.88 4.18
3400 5034 3.674528 ATCTTGCTCGATCATCGGATT 57.325 42.857 7.33 0.00 40.88 3.01
3401 5035 3.459232 TCTTGCTCGATCATCGGATTT 57.541 42.857 7.33 0.00 40.88 2.17
3402 5036 3.384668 TCTTGCTCGATCATCGGATTTC 58.615 45.455 7.33 0.00 40.88 2.17
3403 5037 3.068732 TCTTGCTCGATCATCGGATTTCT 59.931 43.478 7.33 0.00 40.88 2.52
3404 5038 3.459232 TGCTCGATCATCGGATTTCTT 57.541 42.857 7.33 0.00 40.88 2.52
3405 5039 3.797039 TGCTCGATCATCGGATTTCTTT 58.203 40.909 7.33 0.00 40.88 2.52
3406 5040 4.191544 TGCTCGATCATCGGATTTCTTTT 58.808 39.130 7.33 0.00 40.88 2.27
3407 5041 4.635765 TGCTCGATCATCGGATTTCTTTTT 59.364 37.500 7.33 0.00 40.88 1.94
3408 5042 5.815222 TGCTCGATCATCGGATTTCTTTTTA 59.185 36.000 7.33 0.00 40.88 1.52
3409 5043 6.483307 TGCTCGATCATCGGATTTCTTTTTAT 59.517 34.615 7.33 0.00 40.88 1.40
3410 5044 7.012358 GCTCGATCATCGGATTTCTTTTTATC 58.988 38.462 7.33 0.00 40.88 1.75
3411 5045 7.307396 GCTCGATCATCGGATTTCTTTTTATCA 60.307 37.037 7.33 0.00 40.88 2.15
3412 5046 7.851508 TCGATCATCGGATTTCTTTTTATCAC 58.148 34.615 7.33 0.00 40.88 3.06
3413 5047 7.494298 TCGATCATCGGATTTCTTTTTATCACA 59.506 33.333 7.33 0.00 40.88 3.58
3414 5048 8.285394 CGATCATCGGATTTCTTTTTATCACAT 58.715 33.333 0.00 0.00 36.00 3.21
3417 5051 9.613428 TCATCGGATTTCTTTTTATCACATAGT 57.387 29.630 0.00 0.00 0.00 2.12
3427 5061 9.120538 TCTTTTTATCACATAGTAAGAATGGCC 57.879 33.333 0.00 0.00 0.00 5.36
3428 5062 7.490962 TTTTATCACATAGTAAGAATGGCCG 57.509 36.000 0.00 0.00 0.00 6.13
3429 5063 4.689612 ATCACATAGTAAGAATGGCCGT 57.310 40.909 0.00 0.00 0.00 5.68
3430 5064 3.792401 TCACATAGTAAGAATGGCCGTG 58.208 45.455 0.00 0.00 0.00 4.94
3431 5065 2.872245 CACATAGTAAGAATGGCCGTGG 59.128 50.000 0.00 0.00 0.00 4.94
3432 5066 2.769663 ACATAGTAAGAATGGCCGTGGA 59.230 45.455 0.00 0.00 0.00 4.02
3433 5067 2.973694 TAGTAAGAATGGCCGTGGAC 57.026 50.000 0.00 0.00 0.00 4.02
3434 5068 1.276622 AGTAAGAATGGCCGTGGACT 58.723 50.000 0.00 0.00 0.00 3.85
3435 5069 1.207329 AGTAAGAATGGCCGTGGACTC 59.793 52.381 0.00 0.00 0.00 3.36
3436 5070 1.207329 GTAAGAATGGCCGTGGACTCT 59.793 52.381 0.00 0.00 0.00 3.24
3437 5071 0.250513 AAGAATGGCCGTGGACTCTC 59.749 55.000 0.00 0.00 0.00 3.20
3438 5072 1.519455 GAATGGCCGTGGACTCTCG 60.519 63.158 0.00 0.00 0.00 4.04
3439 5073 2.227089 GAATGGCCGTGGACTCTCGT 62.227 60.000 0.00 0.00 0.00 4.18
3440 5074 2.227089 AATGGCCGTGGACTCTCGTC 62.227 60.000 0.00 0.00 39.49 4.20
3441 5075 3.371063 GGCCGTGGACTCTCGTCA 61.371 66.667 0.00 0.00 42.05 4.35
3442 5076 2.649034 GCCGTGGACTCTCGTCAA 59.351 61.111 0.00 0.00 42.05 3.18
3443 5077 1.444553 GCCGTGGACTCTCGTCAAG 60.445 63.158 0.00 0.00 42.05 3.02
3444 5078 1.957562 CCGTGGACTCTCGTCAAGT 59.042 57.895 0.00 0.00 42.05 3.16
3445 5079 1.162698 CCGTGGACTCTCGTCAAGTA 58.837 55.000 0.00 0.00 42.05 2.24
3446 5080 1.538512 CCGTGGACTCTCGTCAAGTAA 59.461 52.381 0.00 0.00 42.05 2.24
3447 5081 2.414293 CCGTGGACTCTCGTCAAGTAAG 60.414 54.545 0.00 0.00 42.05 2.34
3448 5082 2.414293 CGTGGACTCTCGTCAAGTAAGG 60.414 54.545 0.00 0.00 42.05 2.69
3449 5083 2.818432 GTGGACTCTCGTCAAGTAAGGA 59.182 50.000 0.00 0.00 42.05 3.36
3450 5084 3.255149 GTGGACTCTCGTCAAGTAAGGAA 59.745 47.826 0.00 0.00 42.05 3.36
3451 5085 3.506455 TGGACTCTCGTCAAGTAAGGAAG 59.494 47.826 0.00 0.00 42.05 3.46
3452 5086 3.506844 GGACTCTCGTCAAGTAAGGAAGT 59.493 47.826 0.00 0.00 42.05 3.01
3453 5087 4.022155 GGACTCTCGTCAAGTAAGGAAGTT 60.022 45.833 0.00 0.00 42.05 2.66
3454 5088 4.872664 ACTCTCGTCAAGTAAGGAAGTTG 58.127 43.478 0.00 0.00 39.51 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.034879 ACTGAAAGCACATCGCCGG 61.035 57.895 0.00 0.00 44.04 6.13
1 2 1.133253 CACTGAAAGCACATCGCCG 59.867 57.895 0.00 0.00 44.04 6.46
2 3 1.503542 CCACTGAAAGCACATCGCC 59.496 57.895 0.00 0.00 44.04 5.54
3 4 0.955428 TCCCACTGAAAGCACATCGC 60.955 55.000 0.00 0.00 37.60 4.58
4 5 1.081892 CTCCCACTGAAAGCACATCG 58.918 55.000 0.00 0.00 37.60 3.84
5 6 1.003580 TCCTCCCACTGAAAGCACATC 59.996 52.381 0.00 0.00 37.60 3.06
6 7 1.004044 CTCCTCCCACTGAAAGCACAT 59.996 52.381 0.00 0.00 37.60 3.21
7 8 0.397941 CTCCTCCCACTGAAAGCACA 59.602 55.000 0.00 0.00 37.60 4.57
8 9 0.687354 TCTCCTCCCACTGAAAGCAC 59.313 55.000 0.00 0.00 37.60 4.40
9 10 0.687354 GTCTCCTCCCACTGAAAGCA 59.313 55.000 0.00 0.00 37.60 3.91
10 11 0.390472 CGTCTCCTCCCACTGAAAGC 60.390 60.000 0.00 0.00 37.60 3.51
11 12 0.969894 ACGTCTCCTCCCACTGAAAG 59.030 55.000 0.00 0.00 42.29 2.62
12 13 1.343465 GAACGTCTCCTCCCACTGAAA 59.657 52.381 0.00 0.00 0.00 2.69
13 14 0.966920 GAACGTCTCCTCCCACTGAA 59.033 55.000 0.00 0.00 0.00 3.02
14 15 0.898789 GGAACGTCTCCTCCCACTGA 60.899 60.000 8.87 0.00 41.61 3.41
15 16 1.592223 GGAACGTCTCCTCCCACTG 59.408 63.158 8.87 0.00 41.61 3.66
16 17 4.115270 GGAACGTCTCCTCCCACT 57.885 61.111 8.87 0.00 41.61 4.00
37 38 4.883300 GTAGGCGCCTCGTCGTCG 62.883 72.222 36.73 0.00 39.34 5.12
38 39 4.883300 CGTAGGCGCCTCGTCGTC 62.883 72.222 36.73 15.88 36.23 4.20
51 52 6.364165 TCTTCAAATTTACGAAGTCACCGTAG 59.636 38.462 14.55 0.00 43.93 3.51
52 53 6.215121 TCTTCAAATTTACGAAGTCACCGTA 58.785 36.000 14.55 0.00 43.93 4.02
53 54 5.051816 TCTTCAAATTTACGAAGTCACCGT 58.948 37.500 14.55 0.00 43.93 4.83
54 55 5.585500 TCTTCAAATTTACGAAGTCACCG 57.415 39.130 14.55 0.00 43.93 4.94
55 56 7.015877 GTCATCTTCAAATTTACGAAGTCACC 58.984 38.462 14.55 3.35 43.93 4.02
56 57 7.572759 TGTCATCTTCAAATTTACGAAGTCAC 58.427 34.615 14.55 11.11 43.93 3.67
57 58 7.722795 TGTCATCTTCAAATTTACGAAGTCA 57.277 32.000 14.55 9.32 43.93 3.41
58 59 7.217070 GCATGTCATCTTCAAATTTACGAAGTC 59.783 37.037 14.55 7.66 43.93 3.01
60 61 6.470235 GGCATGTCATCTTCAAATTTACGAAG 59.530 38.462 10.57 10.57 40.02 3.79
61 62 6.321717 GGCATGTCATCTTCAAATTTACGAA 58.678 36.000 0.00 0.00 0.00 3.85
62 63 5.447144 CGGCATGTCATCTTCAAATTTACGA 60.447 40.000 0.00 0.00 0.00 3.43
63 64 4.730042 CGGCATGTCATCTTCAAATTTACG 59.270 41.667 0.00 0.00 0.00 3.18
64 65 5.036737 CCGGCATGTCATCTTCAAATTTAC 58.963 41.667 0.00 0.00 0.00 2.01
65 66 4.439974 GCCGGCATGTCATCTTCAAATTTA 60.440 41.667 24.80 0.00 0.00 1.40
66 67 3.676873 GCCGGCATGTCATCTTCAAATTT 60.677 43.478 24.80 0.00 0.00 1.82
67 68 2.159198 GCCGGCATGTCATCTTCAAATT 60.159 45.455 24.80 0.00 0.00 1.82
68 69 1.406539 GCCGGCATGTCATCTTCAAAT 59.593 47.619 24.80 0.00 0.00 2.32
69 70 0.810648 GCCGGCATGTCATCTTCAAA 59.189 50.000 24.80 0.00 0.00 2.69
70 71 0.035152 AGCCGGCATGTCATCTTCAA 60.035 50.000 31.54 0.00 0.00 2.69
71 72 0.462581 GAGCCGGCATGTCATCTTCA 60.463 55.000 31.54 0.00 0.00 3.02
72 73 0.462581 TGAGCCGGCATGTCATCTTC 60.463 55.000 31.54 14.56 0.00 2.87
73 74 0.463295 CTGAGCCGGCATGTCATCTT 60.463 55.000 31.54 3.33 0.00 2.40
74 75 1.145598 CTGAGCCGGCATGTCATCT 59.854 57.895 31.54 4.27 0.00 2.90
75 76 2.541120 GCTGAGCCGGCATGTCATC 61.541 63.158 31.54 16.99 35.55 2.92
76 77 2.515523 GCTGAGCCGGCATGTCAT 60.516 61.111 31.54 6.18 35.55 3.06
77 78 4.783621 GGCTGAGCCGGCATGTCA 62.784 66.667 31.54 22.44 39.62 3.58
94 95 1.089920 CCAATGAGCACCTCCGAAAG 58.910 55.000 0.00 0.00 0.00 2.62
95 96 0.690192 TCCAATGAGCACCTCCGAAA 59.310 50.000 0.00 0.00 0.00 3.46
96 97 0.911769 ATCCAATGAGCACCTCCGAA 59.088 50.000 0.00 0.00 0.00 4.30
97 98 1.688735 CTATCCAATGAGCACCTCCGA 59.311 52.381 0.00 0.00 0.00 4.55
98 99 1.270518 CCTATCCAATGAGCACCTCCG 60.271 57.143 0.00 0.00 0.00 4.63
99 100 1.072965 CCCTATCCAATGAGCACCTCC 59.927 57.143 0.00 0.00 0.00 4.30
100 101 1.771255 ACCCTATCCAATGAGCACCTC 59.229 52.381 0.00 0.00 0.00 3.85
101 102 1.492176 CACCCTATCCAATGAGCACCT 59.508 52.381 0.00 0.00 0.00 4.00
102 103 1.212935 ACACCCTATCCAATGAGCACC 59.787 52.381 0.00 0.00 0.00 5.01
103 104 2.292267 CACACCCTATCCAATGAGCAC 58.708 52.381 0.00 0.00 0.00 4.40
104 105 1.408683 GCACACCCTATCCAATGAGCA 60.409 52.381 0.00 0.00 0.00 4.26
105 106 1.312815 GCACACCCTATCCAATGAGC 58.687 55.000 0.00 0.00 0.00 4.26
106 107 1.134401 ACGCACACCCTATCCAATGAG 60.134 52.381 0.00 0.00 0.00 2.90
107 108 0.908910 ACGCACACCCTATCCAATGA 59.091 50.000 0.00 0.00 0.00 2.57
108 109 1.016627 CACGCACACCCTATCCAATG 58.983 55.000 0.00 0.00 0.00 2.82
109 110 0.618458 ACACGCACACCCTATCCAAT 59.382 50.000 0.00 0.00 0.00 3.16
110 111 0.321210 CACACGCACACCCTATCCAA 60.321 55.000 0.00 0.00 0.00 3.53
111 112 1.295101 CACACGCACACCCTATCCA 59.705 57.895 0.00 0.00 0.00 3.41
112 113 1.019278 CACACACGCACACCCTATCC 61.019 60.000 0.00 0.00 0.00 2.59
113 114 0.320421 ACACACACGCACACCCTATC 60.320 55.000 0.00 0.00 0.00 2.08
114 115 0.107831 AACACACACGCACACCCTAT 59.892 50.000 0.00 0.00 0.00 2.57
115 116 0.531090 GAACACACACGCACACCCTA 60.531 55.000 0.00 0.00 0.00 3.53
116 117 1.817941 GAACACACACGCACACCCT 60.818 57.895 0.00 0.00 0.00 4.34
117 118 1.444119 ATGAACACACACGCACACCC 61.444 55.000 0.00 0.00 0.00 4.61
118 119 1.222300 TATGAACACACACGCACACC 58.778 50.000 0.00 0.00 0.00 4.16
119 120 2.349438 CCTTATGAACACACACGCACAC 60.349 50.000 0.00 0.00 0.00 3.82
120 121 1.870402 CCTTATGAACACACACGCACA 59.130 47.619 0.00 0.00 0.00 4.57
121 122 2.139917 TCCTTATGAACACACACGCAC 58.860 47.619 0.00 0.00 0.00 5.34
122 123 2.535012 TCCTTATGAACACACACGCA 57.465 45.000 0.00 0.00 0.00 5.24
123 124 3.000041 TCATCCTTATGAACACACACGC 59.000 45.455 0.00 0.00 39.20 5.34
124 125 4.245660 ACTCATCCTTATGAACACACACG 58.754 43.478 0.00 0.00 41.57 4.49
125 126 8.982685 CATATACTCATCCTTATGAACACACAC 58.017 37.037 0.00 0.00 41.57 3.82
126 127 7.657354 GCATATACTCATCCTTATGAACACACA 59.343 37.037 0.00 0.00 41.57 3.72
127 128 7.148738 CGCATATACTCATCCTTATGAACACAC 60.149 40.741 0.00 0.00 41.57 3.82
128 129 6.868339 CGCATATACTCATCCTTATGAACACA 59.132 38.462 0.00 0.00 41.57 3.72
129 130 6.183360 GCGCATATACTCATCCTTATGAACAC 60.183 42.308 0.30 0.00 41.57 3.32
130 131 5.869344 GCGCATATACTCATCCTTATGAACA 59.131 40.000 0.30 0.00 41.57 3.18
131 132 5.004821 CGCGCATATACTCATCCTTATGAAC 59.995 44.000 8.75 0.00 41.57 3.18
132 133 5.102313 CGCGCATATACTCATCCTTATGAA 58.898 41.667 8.75 0.00 41.57 2.57
133 134 4.157840 ACGCGCATATACTCATCCTTATGA 59.842 41.667 5.73 0.00 39.87 2.15
134 135 4.424626 ACGCGCATATACTCATCCTTATG 58.575 43.478 5.73 0.00 0.00 1.90
135 136 4.720649 ACGCGCATATACTCATCCTTAT 57.279 40.909 5.73 0.00 0.00 1.73
136 137 5.124936 ACATACGCGCATATACTCATCCTTA 59.875 40.000 5.73 0.00 0.00 2.69
137 138 4.082190 ACATACGCGCATATACTCATCCTT 60.082 41.667 5.73 0.00 0.00 3.36
138 139 3.444034 ACATACGCGCATATACTCATCCT 59.556 43.478 5.73 0.00 0.00 3.24
139 140 3.770666 ACATACGCGCATATACTCATCC 58.229 45.455 5.73 0.00 0.00 3.51
140 141 6.199393 TCATACATACGCGCATATACTCATC 58.801 40.000 5.73 0.00 0.00 2.92
141 142 6.131544 TCATACATACGCGCATATACTCAT 57.868 37.500 5.73 0.00 0.00 2.90
142 143 5.554822 TCATACATACGCGCATATACTCA 57.445 39.130 5.73 0.00 0.00 3.41
143 144 4.438145 GCTCATACATACGCGCATATACTC 59.562 45.833 5.73 0.00 0.00 2.59
144 145 4.352039 GCTCATACATACGCGCATATACT 58.648 43.478 5.73 0.00 0.00 2.12
145 146 3.177838 CGCTCATACATACGCGCATATAC 59.822 47.826 5.73 0.00 39.11 1.47
146 147 3.359654 CGCTCATACATACGCGCATATA 58.640 45.455 5.73 0.00 39.11 0.86
147 148 2.185262 CGCTCATACATACGCGCATAT 58.815 47.619 5.73 0.00 39.11 1.78
148 149 1.613270 CGCTCATACATACGCGCATA 58.387 50.000 5.73 0.00 39.11 3.14
149 150 2.434688 CGCTCATACATACGCGCAT 58.565 52.632 5.73 0.00 39.11 4.73
150 151 3.916439 CGCTCATACATACGCGCA 58.084 55.556 5.73 0.00 39.11 6.09
154 155 0.159554 CGCAAGCGCTCATACATACG 59.840 55.000 12.06 0.00 35.30 3.06
155 156 1.190323 GACGCAAGCGCTCATACATAC 59.810 52.381 12.06 0.00 44.19 2.39
156 157 1.067060 AGACGCAAGCGCTCATACATA 59.933 47.619 12.06 0.00 44.19 2.29
157 158 0.179100 AGACGCAAGCGCTCATACAT 60.179 50.000 12.06 0.00 44.19 2.29
158 159 0.454196 TAGACGCAAGCGCTCATACA 59.546 50.000 12.06 0.00 44.19 2.29
159 160 1.772182 ATAGACGCAAGCGCTCATAC 58.228 50.000 12.06 1.58 44.19 2.39
160 161 2.552743 AGTATAGACGCAAGCGCTCATA 59.447 45.455 12.06 6.40 44.19 2.15
161 162 1.338337 AGTATAGACGCAAGCGCTCAT 59.662 47.619 12.06 7.35 44.19 2.90
162 163 0.738975 AGTATAGACGCAAGCGCTCA 59.261 50.000 12.06 0.00 44.19 4.26
163 164 1.124462 CAGTATAGACGCAAGCGCTC 58.876 55.000 12.06 11.06 44.19 5.03
164 165 0.738975 TCAGTATAGACGCAAGCGCT 59.261 50.000 15.09 2.64 44.19 5.92
165 166 1.453524 CATCAGTATAGACGCAAGCGC 59.546 52.381 15.09 0.00 44.19 5.92
166 167 2.732366 ACATCAGTATAGACGCAAGCG 58.268 47.619 13.50 13.50 46.03 4.68
167 168 6.583912 TTTAACATCAGTATAGACGCAAGC 57.416 37.500 0.00 0.00 45.62 4.01
190 191 8.062065 TCTGATTTACTTATCGGGCAATTTTT 57.938 30.769 0.00 0.00 32.77 1.94
191 192 7.639113 TCTGATTTACTTATCGGGCAATTTT 57.361 32.000 0.00 0.00 32.77 1.82
192 193 7.556275 TCTTCTGATTTACTTATCGGGCAATTT 59.444 33.333 0.00 0.00 32.77 1.82
193 194 7.054124 TCTTCTGATTTACTTATCGGGCAATT 58.946 34.615 0.00 0.00 32.77 2.32
194 195 6.591935 TCTTCTGATTTACTTATCGGGCAAT 58.408 36.000 0.00 0.00 32.77 3.56
195 196 5.984725 TCTTCTGATTTACTTATCGGGCAA 58.015 37.500 0.00 0.00 32.77 4.52
196 197 5.607939 TCTTCTGATTTACTTATCGGGCA 57.392 39.130 0.00 0.00 32.77 5.36
197 198 6.920569 TTTCTTCTGATTTACTTATCGGGC 57.079 37.500 0.00 0.00 32.77 6.13
198 199 7.277098 TCGTTTTCTTCTGATTTACTTATCGGG 59.723 37.037 0.00 0.00 32.77 5.14
199 200 8.181487 TCGTTTTCTTCTGATTTACTTATCGG 57.819 34.615 0.00 0.00 33.12 4.18
200 201 9.625009 CATCGTTTTCTTCTGATTTACTTATCG 57.375 33.333 0.00 0.00 0.00 2.92
201 202 9.922305 CCATCGTTTTCTTCTGATTTACTTATC 57.078 33.333 0.00 0.00 0.00 1.75
202 203 9.449719 ACCATCGTTTTCTTCTGATTTACTTAT 57.550 29.630 0.00 0.00 0.00 1.73
203 204 8.717821 CACCATCGTTTTCTTCTGATTTACTTA 58.282 33.333 0.00 0.00 0.00 2.24
204 205 7.228706 ACACCATCGTTTTCTTCTGATTTACTT 59.771 33.333 0.00 0.00 0.00 2.24
205 206 6.710744 ACACCATCGTTTTCTTCTGATTTACT 59.289 34.615 0.00 0.00 0.00 2.24
206 207 6.899114 ACACCATCGTTTTCTTCTGATTTAC 58.101 36.000 0.00 0.00 0.00 2.01
207 208 8.610248 TTACACCATCGTTTTCTTCTGATTTA 57.390 30.769 0.00 0.00 0.00 1.40
208 209 7.504924 TTACACCATCGTTTTCTTCTGATTT 57.495 32.000 0.00 0.00 0.00 2.17
209 210 7.687941 ATTACACCATCGTTTTCTTCTGATT 57.312 32.000 0.00 0.00 0.00 2.57
210 211 7.362056 CCAATTACACCATCGTTTTCTTCTGAT 60.362 37.037 0.00 0.00 0.00 2.90
211 212 6.072728 CCAATTACACCATCGTTTTCTTCTGA 60.073 38.462 0.00 0.00 0.00 3.27
212 213 6.086222 CCAATTACACCATCGTTTTCTTCTG 58.914 40.000 0.00 0.00 0.00 3.02
213 214 5.335661 GCCAATTACACCATCGTTTTCTTCT 60.336 40.000 0.00 0.00 0.00 2.85
214 215 4.857037 GCCAATTACACCATCGTTTTCTTC 59.143 41.667 0.00 0.00 0.00 2.87
215 216 4.321675 GGCCAATTACACCATCGTTTTCTT 60.322 41.667 0.00 0.00 0.00 2.52
216 217 3.192633 GGCCAATTACACCATCGTTTTCT 59.807 43.478 0.00 0.00 0.00 2.52
217 218 3.057174 TGGCCAATTACACCATCGTTTTC 60.057 43.478 0.61 0.00 0.00 2.29
218 219 2.894126 TGGCCAATTACACCATCGTTTT 59.106 40.909 0.61 0.00 0.00 2.43
219 220 2.230266 GTGGCCAATTACACCATCGTTT 59.770 45.455 7.24 0.00 35.53 3.60
220 221 1.816224 GTGGCCAATTACACCATCGTT 59.184 47.619 7.24 0.00 35.53 3.85
221 222 1.271652 TGTGGCCAATTACACCATCGT 60.272 47.619 7.24 0.00 36.80 3.73
222 223 1.458398 TGTGGCCAATTACACCATCG 58.542 50.000 7.24 0.00 36.80 3.84
223 224 4.470334 AAATGTGGCCAATTACACCATC 57.530 40.909 7.24 0.00 36.80 3.51
224 225 6.558488 AATAAATGTGGCCAATTACACCAT 57.442 33.333 7.24 1.01 36.80 3.55
225 226 6.365970 AAATAAATGTGGCCAATTACACCA 57.634 33.333 7.24 0.00 36.80 4.17
226 227 7.102993 AGAAAATAAATGTGGCCAATTACACC 58.897 34.615 7.24 0.00 36.80 4.16
227 228 7.816995 TGAGAAAATAAATGTGGCCAATTACAC 59.183 33.333 7.24 0.00 38.08 2.90
228 229 7.816995 GTGAGAAAATAAATGTGGCCAATTACA 59.183 33.333 7.24 0.08 0.00 2.41
233 234 5.798125 TGTGAGAAAATAAATGTGGCCAA 57.202 34.783 7.24 0.00 0.00 4.52
236 237 8.016801 CCAAAATTGTGAGAAAATAAATGTGGC 58.983 33.333 0.00 0.00 0.00 5.01
270 271 7.023575 GCAGCTGTTTTATTTATGGGATATCG 58.976 38.462 16.64 0.00 0.00 2.92
276 277 4.114794 GCAGCAGCTGTTTTATTTATGGG 58.885 43.478 23.60 0.00 37.91 4.00
277 278 4.114794 GGCAGCAGCTGTTTTATTTATGG 58.885 43.478 23.60 0.00 41.70 2.74
279 280 4.675146 CGTGGCAGCAGCTGTTTTATTTAT 60.675 41.667 23.60 0.00 41.70 1.40
280 281 3.365868 CGTGGCAGCAGCTGTTTTATTTA 60.366 43.478 23.60 0.00 41.70 1.40
281 282 2.607771 CGTGGCAGCAGCTGTTTTATTT 60.608 45.455 23.60 0.00 41.70 1.40
282 283 1.068333 CGTGGCAGCAGCTGTTTTATT 60.068 47.619 23.60 0.00 41.70 1.40
304 311 3.855630 TTTTTGAACCGGACGCATG 57.144 47.368 9.46 0.00 0.00 4.06
370 382 4.035102 GGTGGGGAGGACTGTGGC 62.035 72.222 0.00 0.00 0.00 5.01
497 509 4.096003 CACAGCCCACGGGGTAGG 62.096 72.222 6.48 0.00 46.51 3.18
509 521 2.649129 GGGATTGGTTGGCCACAGC 61.649 63.158 3.88 7.60 46.01 4.40
510 522 2.342650 CGGGATTGGTTGGCCACAG 61.343 63.158 3.88 0.00 46.01 3.66
511 523 2.282816 CGGGATTGGTTGGCCACA 60.283 61.111 3.88 0.00 46.01 4.17
955 978 1.773541 GGATGGGGGAGGGGATAAAT 58.226 55.000 0.00 0.00 0.00 1.40
956 979 0.404346 GGGATGGGGGAGGGGATAAA 60.404 60.000 0.00 0.00 0.00 1.40
957 980 1.244963 GGGATGGGGGAGGGGATAA 59.755 63.158 0.00 0.00 0.00 1.75
958 981 2.824856 GGGGATGGGGGAGGGGATA 61.825 68.421 0.00 0.00 0.00 2.59
959 982 4.223426 GGGGATGGGGGAGGGGAT 62.223 72.222 0.00 0.00 0.00 3.85
962 985 4.556898 ATGGGGGATGGGGGAGGG 62.557 72.222 0.00 0.00 0.00 4.30
963 986 2.371528 AATGGGGGATGGGGGAGG 60.372 66.667 0.00 0.00 0.00 4.30
964 987 1.701024 TGAATGGGGGATGGGGGAG 60.701 63.158 0.00 0.00 0.00 4.30
965 988 2.012210 GTGAATGGGGGATGGGGGA 61.012 63.158 0.00 0.00 0.00 4.81
966 989 2.608759 GTGAATGGGGGATGGGGG 59.391 66.667 0.00 0.00 0.00 5.40
967 990 2.323758 TGGTGAATGGGGGATGGGG 61.324 63.158 0.00 0.00 0.00 4.96
971 994 1.697297 GTGGTGGTGAATGGGGGAT 59.303 57.895 0.00 0.00 0.00 3.85
1048 1081 4.887987 GATCGCTCCGCTGCTGCT 62.888 66.667 14.03 0.00 36.97 4.24
1065 1098 2.493675 TGGAAGAGAGTTGGTCGATGAG 59.506 50.000 0.00 0.00 0.00 2.90
1079 1112 4.377431 CCGTTGAATCGAAACTTGGAAGAG 60.377 45.833 0.00 0.00 0.00 2.85
1083 1116 2.803956 GTCCGTTGAATCGAAACTTGGA 59.196 45.455 0.00 0.00 0.00 3.53
1085 1118 3.870723 TGTCCGTTGAATCGAAACTTG 57.129 42.857 0.00 0.00 0.00 3.16
1086 1119 3.188460 CCATGTCCGTTGAATCGAAACTT 59.812 43.478 0.00 0.00 0.00 2.66
1087 1120 2.742053 CCATGTCCGTTGAATCGAAACT 59.258 45.455 0.00 0.00 0.00 2.66
1088 1121 2.159572 CCCATGTCCGTTGAATCGAAAC 60.160 50.000 0.00 0.00 0.00 2.78
1089 1122 2.080693 CCCATGTCCGTTGAATCGAAA 58.919 47.619 0.00 0.00 0.00 3.46
1090 1123 1.677518 CCCCATGTCCGTTGAATCGAA 60.678 52.381 0.00 0.00 0.00 3.71
1091 1124 0.107897 CCCCATGTCCGTTGAATCGA 60.108 55.000 0.00 0.00 0.00 3.59
1092 1125 0.107897 TCCCCATGTCCGTTGAATCG 60.108 55.000 0.00 0.00 0.00 3.34
1093 1126 1.949525 CATCCCCATGTCCGTTGAATC 59.050 52.381 0.00 0.00 0.00 2.52
1094 1127 2.023788 GCATCCCCATGTCCGTTGAAT 61.024 52.381 0.00 0.00 31.86 2.57
1095 1128 0.679640 GCATCCCCATGTCCGTTGAA 60.680 55.000 0.00 0.00 31.86 2.69
1398 1570 3.043999 GCCGGTGGCCTTCCAGTAT 62.044 63.158 3.32 0.00 44.48 2.12
1596 1774 9.226606 CCAAATCAACTACTAGTAATCAACCAA 57.773 33.333 3.76 0.00 0.00 3.67
1598 1781 8.788325 ACCAAATCAACTACTAGTAATCAACC 57.212 34.615 3.76 0.00 0.00 3.77
1602 1785 8.044908 TCCCAACCAAATCAACTACTAGTAATC 58.955 37.037 3.76 0.00 0.00 1.75
1610 1797 6.208599 TCTGAAATCCCAACCAAATCAACTAC 59.791 38.462 0.00 0.00 0.00 2.73
1612 1799 5.147032 TCTGAAATCCCAACCAAATCAACT 58.853 37.500 0.00 0.00 0.00 3.16
1680 1887 7.395190 AACAAATTCAGATCGGAATCATCAA 57.605 32.000 19.44 0.00 36.51 2.57
1685 1892 7.530010 TGAAGAAACAAATTCAGATCGGAATC 58.470 34.615 19.44 8.62 40.72 2.52
1686 1893 7.452880 TGAAGAAACAAATTCAGATCGGAAT 57.547 32.000 14.44 14.44 40.72 3.01
1687 1894 6.875948 TGAAGAAACAAATTCAGATCGGAA 57.124 33.333 10.79 10.79 40.72 4.30
1688 1895 7.242800 AGCTGAAGAAACAAATTCAGATCGGA 61.243 38.462 16.80 0.00 46.20 4.55
1825 2032 4.735132 ACCACCATGTCCGACGCG 62.735 66.667 3.53 3.53 0.00 6.01
1906 2113 3.702253 TCGACGATCTCCGACTCG 58.298 61.111 0.00 0.00 41.76 4.18
2125 2338 0.553819 AGTAGAGCAGATCGTCCCCT 59.446 55.000 0.00 0.00 0.00 4.79
2134 2347 0.913205 AGAGGGACGAGTAGAGCAGA 59.087 55.000 0.00 0.00 0.00 4.26
2146 2359 3.471806 GGGGAGGCGAAGAGGGAC 61.472 72.222 0.00 0.00 0.00 4.46
2230 2443 1.664873 TCTCGGTATCTGACGGTCTG 58.335 55.000 9.88 9.18 0.00 3.51
2242 2455 2.014857 CCACTTCTGTCGATCTCGGTA 58.985 52.381 0.00 0.00 40.29 4.02
2302 2517 4.368315 TCCTATGCTGTATTTACACTGCG 58.632 43.478 0.00 0.00 43.89 5.18
2338 2553 4.419957 CTCGACACGACGACGCGA 62.420 66.667 15.93 7.69 43.96 5.87
2339 2554 4.419957 TCTCGACACGACGACGCG 62.420 66.667 3.53 3.53 43.96 6.01
2595 2824 1.066430 GTTCATCCTGCCCGACTACAA 60.066 52.381 0.00 0.00 0.00 2.41
2598 2827 0.824109 CAGTTCATCCTGCCCGACTA 59.176 55.000 0.00 0.00 0.00 2.59
2599 2828 1.599047 CAGTTCATCCTGCCCGACT 59.401 57.895 0.00 0.00 0.00 4.18
2615 2844 2.229784 GACTGACTGAAAAATGGGGCAG 59.770 50.000 0.00 0.00 34.65 4.85
2650 2882 2.234335 GGCAAACAAAACACGGGCG 61.234 57.895 0.00 0.00 0.00 6.13
2654 2886 0.179113 AGGCAGGCAAACAAAACACG 60.179 50.000 0.00 0.00 0.00 4.49
2660 2892 1.442567 CAAGCAGGCAGGCAAACAA 59.557 52.632 0.00 0.00 35.83 2.83
2732 2968 1.471119 TCATAGTGAGTGGACGGTCC 58.529 55.000 20.36 20.36 36.96 4.46
2748 2989 4.833478 AAAGTACTGCCTGTGAGATCAT 57.167 40.909 0.00 0.00 0.00 2.45
2764 3005 3.129988 GCCGCCTAGTCTCAGTAAAAGTA 59.870 47.826 0.00 0.00 0.00 2.24
2801 4398 6.364976 AGTTTAAGTTGTGTTTGTTGCTGTTC 59.635 34.615 0.00 0.00 0.00 3.18
2824 4430 4.755123 CACTGGTTCTATTTTGGTCGAAGT 59.245 41.667 0.00 0.00 0.00 3.01
2830 4436 4.278419 GCTTGTCACTGGTTCTATTTTGGT 59.722 41.667 0.00 0.00 0.00 3.67
2838 4444 0.109342 CCTGGCTTGTCACTGGTTCT 59.891 55.000 0.00 0.00 0.00 3.01
2849 4455 4.437587 CCTCCTGGGCCTGGCTTG 62.438 72.222 23.72 15.24 0.00 4.01
2915 4523 1.443407 CCTGGCTACGCTGCTACAT 59.557 57.895 0.00 0.00 0.00 2.29
2916 4524 2.892640 CCTGGCTACGCTGCTACA 59.107 61.111 0.00 0.00 0.00 2.74
2967 4583 1.166129 TGAGCTCTCGTGTCACTACC 58.834 55.000 16.19 0.00 0.00 3.18
2968 4584 2.991434 TTGAGCTCTCGTGTCACTAC 57.009 50.000 16.19 0.00 0.00 2.73
2969 4585 3.759086 AGATTTGAGCTCTCGTGTCACTA 59.241 43.478 16.19 0.00 0.00 2.74
2970 4586 2.560542 AGATTTGAGCTCTCGTGTCACT 59.439 45.455 16.19 1.20 0.00 3.41
2971 4587 2.953020 AGATTTGAGCTCTCGTGTCAC 58.047 47.619 16.19 0.00 0.00 3.67
2972 4588 3.005791 TCAAGATTTGAGCTCTCGTGTCA 59.994 43.478 16.19 0.00 34.08 3.58
2973 4589 3.579709 TCAAGATTTGAGCTCTCGTGTC 58.420 45.455 16.19 6.21 34.08 3.67
2974 4590 3.667497 TCAAGATTTGAGCTCTCGTGT 57.333 42.857 16.19 0.00 34.08 4.49
3032 4648 7.492669 TCTTCCTGCTATCAGTCTAATTTTTCG 59.507 37.037 0.00 0.00 38.66 3.46
3050 4666 8.897752 ACATCTTAGTATGATTTTTCTTCCTGC 58.102 33.333 0.00 0.00 0.00 4.85
3062 4678 4.524714 CCACCTCCGACATCTTAGTATGAT 59.475 45.833 0.00 0.00 0.00 2.45
3063 4679 3.889538 CCACCTCCGACATCTTAGTATGA 59.110 47.826 0.00 0.00 0.00 2.15
3064 4680 3.553096 GCCACCTCCGACATCTTAGTATG 60.553 52.174 0.00 0.00 0.00 2.39
3065 4681 2.628657 GCCACCTCCGACATCTTAGTAT 59.371 50.000 0.00 0.00 0.00 2.12
3077 4695 2.589798 TTATAAGTTCGCCACCTCCG 57.410 50.000 0.00 0.00 0.00 4.63
3122 4745 3.451902 CCCAACCCAAATGCACATTATCT 59.548 43.478 0.00 0.00 0.00 1.98
3135 4758 3.226777 CACAAATCACTACCCAACCCAA 58.773 45.455 0.00 0.00 0.00 4.12
3136 4759 2.489985 CCACAAATCACTACCCAACCCA 60.490 50.000 0.00 0.00 0.00 4.51
3137 4760 2.167662 CCACAAATCACTACCCAACCC 58.832 52.381 0.00 0.00 0.00 4.11
3138 4761 2.817844 GACCACAAATCACTACCCAACC 59.182 50.000 0.00 0.00 0.00 3.77
3139 4762 3.502211 CAGACCACAAATCACTACCCAAC 59.498 47.826 0.00 0.00 0.00 3.77
3176 4799 6.212187 TGGAGATTCAAGTTCTCTTCATCAGA 59.788 38.462 1.19 0.00 39.65 3.27
3179 4802 7.678947 TTTGGAGATTCAAGTTCTCTTCATC 57.321 36.000 1.19 0.00 39.65 2.92
3183 4806 6.836007 AGGTTTTTGGAGATTCAAGTTCTCTT 59.164 34.615 1.19 0.00 39.65 2.85
3184 4807 6.368805 AGGTTTTTGGAGATTCAAGTTCTCT 58.631 36.000 1.19 0.00 39.65 3.10
3207 4830 2.426024 CCATGATGGCACTTGGAGAAAG 59.574 50.000 0.00 0.00 42.07 2.62
3241 4864 7.037586 ACCATTCTACTCCAAAATCTCCAGTAA 60.038 37.037 0.00 0.00 0.00 2.24
3244 4867 5.749462 ACCATTCTACTCCAAAATCTCCAG 58.251 41.667 0.00 0.00 0.00 3.86
3246 4869 6.890293 ACTACCATTCTACTCCAAAATCTCC 58.110 40.000 0.00 0.00 0.00 3.71
3268 4891 6.619801 AAGACAAAGAAAATGAAGCGTACT 57.380 33.333 0.00 0.00 0.00 2.73
3269 4892 8.950403 ATTAAGACAAAGAAAATGAAGCGTAC 57.050 30.769 0.00 0.00 0.00 3.67
3271 4894 8.871686 AAATTAAGACAAAGAAAATGAAGCGT 57.128 26.923 0.00 0.00 0.00 5.07
3272 4895 9.185192 AGAAATTAAGACAAAGAAAATGAAGCG 57.815 29.630 0.00 0.00 0.00 4.68
3325 4948 6.521151 TTAGTTTAAAGTCGGTAGGAGAGG 57.479 41.667 0.00 0.00 0.00 3.69
3326 4949 8.870879 CATTTTAGTTTAAAGTCGGTAGGAGAG 58.129 37.037 0.00 0.00 0.00 3.20
3327 4950 8.587608 TCATTTTAGTTTAAAGTCGGTAGGAGA 58.412 33.333 0.00 0.00 0.00 3.71
3328 4951 8.767478 TCATTTTAGTTTAAAGTCGGTAGGAG 57.233 34.615 0.00 0.00 0.00 3.69
3329 4952 8.992073 GTTCATTTTAGTTTAAAGTCGGTAGGA 58.008 33.333 0.00 0.00 0.00 2.94
3330 4953 8.996271 AGTTCATTTTAGTTTAAAGTCGGTAGG 58.004 33.333 0.00 0.00 0.00 3.18
3334 4957 9.326339 GCTTAGTTCATTTTAGTTTAAAGTCGG 57.674 33.333 0.00 0.00 0.00 4.79
3335 4958 9.037417 CGCTTAGTTCATTTTAGTTTAAAGTCG 57.963 33.333 0.00 0.00 0.00 4.18
3345 4979 5.220416 CCTTCGGACGCTTAGTTCATTTTAG 60.220 44.000 0.00 0.00 0.00 1.85
3382 5016 3.388308 AGAAATCCGATGATCGAGCAAG 58.612 45.455 17.52 4.87 43.74 4.01
3383 5017 3.459232 AGAAATCCGATGATCGAGCAA 57.541 42.857 17.52 0.00 43.74 3.91
3384 5018 3.459232 AAGAAATCCGATGATCGAGCA 57.541 42.857 17.52 5.53 43.74 4.26
3385 5019 4.802876 AAAAGAAATCCGATGATCGAGC 57.197 40.909 17.52 0.00 43.74 5.03
3386 5020 8.006590 GTGATAAAAAGAAATCCGATGATCGAG 58.993 37.037 17.52 6.69 43.74 4.04
3387 5021 7.494298 TGTGATAAAAAGAAATCCGATGATCGA 59.506 33.333 17.52 2.86 43.74 3.59
3388 5022 7.630026 TGTGATAAAAAGAAATCCGATGATCG 58.370 34.615 8.05 8.05 40.07 3.69
3391 5025 9.613428 ACTATGTGATAAAAAGAAATCCGATGA 57.387 29.630 0.00 0.00 0.00 2.92
3401 5035 9.120538 GGCCATTCTTACTATGTGATAAAAAGA 57.879 33.333 0.00 0.00 0.00 2.52
3402 5036 8.070171 CGGCCATTCTTACTATGTGATAAAAAG 58.930 37.037 2.24 0.00 0.00 2.27
3403 5037 7.554835 ACGGCCATTCTTACTATGTGATAAAAA 59.445 33.333 2.24 0.00 0.00 1.94
3404 5038 7.011950 CACGGCCATTCTTACTATGTGATAAAA 59.988 37.037 2.24 0.00 0.00 1.52
3405 5039 6.481976 CACGGCCATTCTTACTATGTGATAAA 59.518 38.462 2.24 0.00 0.00 1.40
3406 5040 5.989168 CACGGCCATTCTTACTATGTGATAA 59.011 40.000 2.24 0.00 0.00 1.75
3407 5041 5.510690 CCACGGCCATTCTTACTATGTGATA 60.511 44.000 2.24 0.00 0.00 2.15
3408 5042 4.380531 CACGGCCATTCTTACTATGTGAT 58.619 43.478 2.24 0.00 0.00 3.06
3409 5043 3.431626 CCACGGCCATTCTTACTATGTGA 60.432 47.826 2.24 0.00 0.00 3.58
3410 5044 2.872245 CCACGGCCATTCTTACTATGTG 59.128 50.000 2.24 0.00 0.00 3.21
3411 5045 2.769663 TCCACGGCCATTCTTACTATGT 59.230 45.455 2.24 0.00 0.00 2.29
3412 5046 3.131396 GTCCACGGCCATTCTTACTATG 58.869 50.000 2.24 0.00 0.00 2.23
3413 5047 3.039011 AGTCCACGGCCATTCTTACTAT 58.961 45.455 2.24 0.00 0.00 2.12
3414 5048 2.429610 GAGTCCACGGCCATTCTTACTA 59.570 50.000 2.24 0.00 0.00 1.82
3415 5049 1.207329 GAGTCCACGGCCATTCTTACT 59.793 52.381 2.24 0.00 0.00 2.24
3416 5050 1.207329 AGAGTCCACGGCCATTCTTAC 59.793 52.381 2.24 0.00 0.00 2.34
3417 5051 1.480954 GAGAGTCCACGGCCATTCTTA 59.519 52.381 2.24 0.00 0.00 2.10
3418 5052 0.250513 GAGAGTCCACGGCCATTCTT 59.749 55.000 2.24 0.00 0.00 2.52
3419 5053 1.901085 GAGAGTCCACGGCCATTCT 59.099 57.895 2.24 0.00 0.00 2.40
3420 5054 1.519455 CGAGAGTCCACGGCCATTC 60.519 63.158 2.24 0.00 0.00 2.67
3421 5055 2.283529 ACGAGAGTCCACGGCCATT 61.284 57.895 2.24 0.00 44.19 3.16
3422 5056 2.680352 ACGAGAGTCCACGGCCAT 60.680 61.111 2.24 0.00 44.19 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.