Multiple sequence alignment - TraesCS5D01G481100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G481100 chr5D 100.000 3507 0 0 1 3507 519195282 519198788 0.000000e+00 6477.0
1 TraesCS5D01G481100 chr5D 81.502 892 139 15 806 1686 519204581 519205457 0.000000e+00 710.0
2 TraesCS5D01G481100 chr5D 91.131 327 27 2 3181 3505 531900251 531900577 3.210000e-120 442.0
3 TraesCS5D01G481100 chr5D 89.759 332 32 2 3178 3507 54690955 54690624 1.160000e-114 424.0
4 TraesCS5D01G481100 chr5D 87.565 193 16 4 1320 1508 15545476 15545664 2.120000e-52 217.0
5 TraesCS5D01G481100 chr5D 83.654 208 27 3 2305 2507 519210680 519210885 4.620000e-44 189.0
6 TraesCS5D01G481100 chr5B 94.528 731 32 5 899 1625 653228786 653229512 0.000000e+00 1122.0
7 TraesCS5D01G481100 chr5B 87.087 666 42 26 109 744 653228063 653228714 0.000000e+00 713.0
8 TraesCS5D01G481100 chr5B 82.729 828 70 32 2290 3108 653230328 653231091 0.000000e+00 669.0
9 TraesCS5D01G481100 chr5B 92.991 428 21 2 1651 2077 653229511 653229930 1.790000e-172 616.0
10 TraesCS5D01G481100 chr5B 97.196 107 2 1 2186 2292 653230188 653230293 2.780000e-41 180.0
11 TraesCS5D01G481100 chr5B 96.552 87 3 0 2101 2187 653229987 653230073 1.010000e-30 145.0
12 TraesCS5D01G481100 chr5A 92.784 776 36 8 899 1658 645628414 645629185 0.000000e+00 1105.0
13 TraesCS5D01G481100 chr5A 88.022 743 53 10 2301 3035 645630076 645630790 0.000000e+00 846.0
14 TraesCS5D01G481100 chr5A 78.223 1249 197 48 689 1899 490587975 490589186 0.000000e+00 730.0
15 TraesCS5D01G481100 chr5A 82.538 922 62 45 1 892 645627311 645628163 0.000000e+00 719.0
16 TraesCS5D01G481100 chr5A 89.258 391 16 5 1823 2187 645629430 645629820 1.910000e-127 466.0
17 TraesCS5D01G481100 chr5A 89.453 256 18 2 1518 1772 645629182 645629429 7.310000e-82 315.0
18 TraesCS5D01G481100 chr5A 100.000 32 0 0 2362 2393 182719463 182719494 3.780000e-05 60.2
19 TraesCS5D01G481100 chr7A 80.952 1134 162 30 802 1906 678003316 678004424 0.000000e+00 848.0
20 TraesCS5D01G481100 chr7A 79.825 228 34 6 2921 3146 72813438 72813221 4.690000e-34 156.0
21 TraesCS5D01G481100 chr7A 79.825 228 34 6 2921 3146 72851022 72850805 4.690000e-34 156.0
22 TraesCS5D01G481100 chr2B 77.813 1253 205 40 689 1904 657728193 657726977 0.000000e+00 706.0
23 TraesCS5D01G481100 chr2B 92.000 50 4 0 1 50 752944402 752944353 1.750000e-08 71.3
24 TraesCS5D01G481100 chr2B 100.000 33 0 0 2362 2394 143003301 143003269 1.050000e-05 62.1
25 TraesCS5D01G481100 chr1B 79.426 1045 174 27 802 1830 553901449 553900430 0.000000e+00 701.0
26 TraesCS5D01G481100 chr3D 92.355 327 23 2 3183 3507 41428355 41428681 6.860000e-127 464.0
27 TraesCS5D01G481100 chr6D 91.159 328 26 3 3181 3507 455503915 455503590 3.210000e-120 442.0
28 TraesCS5D01G481100 chr6D 100.000 32 0 0 2362 2393 180109717 180109686 3.780000e-05 60.2
29 TraesCS5D01G481100 chr4A 90.030 331 31 2 3179 3507 622475763 622475433 9.000000e-116 427.0
30 TraesCS5D01G481100 chr4A 90.030 331 31 2 3179 3507 622509959 622509629 9.000000e-116 427.0
31 TraesCS5D01G481100 chr4A 90.000 330 32 1 3179 3507 622558524 622558195 3.240000e-115 425.0
32 TraesCS5D01G481100 chr4A 89.728 331 32 2 3179 3507 622440892 622440562 4.190000e-114 422.0
33 TraesCS5D01G481100 chr4A 90.909 44 4 0 9 52 18263389 18263346 3.780000e-05 60.2
34 TraesCS5D01G481100 chr1D 90.000 330 29 4 3181 3507 313569101 313568773 1.160000e-114 424.0
35 TraesCS5D01G481100 chr6A 83.175 422 65 3 1046 1467 485761438 485761023 7.100000e-102 381.0
36 TraesCS5D01G481100 chr6A 77.406 239 30 11 1692 1906 485760956 485760718 1.710000e-23 121.0
37 TraesCS5D01G481100 chr7D 82.759 232 36 4 2918 3146 67099276 67099506 1.650000e-48 204.0
38 TraesCS5D01G481100 chr2A 75.571 438 59 22 1499 1906 579832660 579832241 4.650000e-39 172.0
39 TraesCS5D01G481100 chr2A 87.705 122 14 1 1020 1141 579832780 579832660 1.310000e-29 141.0
40 TraesCS5D01G481100 chr4D 91.837 49 1 3 2362 2409 410795777 410795823 8.130000e-07 65.8
41 TraesCS5D01G481100 chr4D 100.000 33 0 0 2362 2394 215903038 215903070 1.050000e-05 62.1
42 TraesCS5D01G481100 chr2D 100.000 32 0 0 2361 2392 423335545 423335576 3.780000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G481100 chr5D 519195282 519198788 3506 False 6477.000000 6477 100.000000 1 3507 1 chr5D.!!$F2 3506
1 TraesCS5D01G481100 chr5D 519204581 519205457 876 False 710.000000 710 81.502000 806 1686 1 chr5D.!!$F3 880
2 TraesCS5D01G481100 chr5B 653228063 653231091 3028 False 574.166667 1122 91.847167 109 3108 6 chr5B.!!$F1 2999
3 TraesCS5D01G481100 chr5A 490587975 490589186 1211 False 730.000000 730 78.223000 689 1899 1 chr5A.!!$F2 1210
4 TraesCS5D01G481100 chr5A 645627311 645630790 3479 False 690.200000 1105 88.411000 1 3035 5 chr5A.!!$F3 3034
5 TraesCS5D01G481100 chr7A 678003316 678004424 1108 False 848.000000 848 80.952000 802 1906 1 chr7A.!!$F1 1104
6 TraesCS5D01G481100 chr2B 657726977 657728193 1216 True 706.000000 706 77.813000 689 1904 1 chr2B.!!$R2 1215
7 TraesCS5D01G481100 chr1B 553900430 553901449 1019 True 701.000000 701 79.426000 802 1830 1 chr1B.!!$R1 1028
8 TraesCS5D01G481100 chr6A 485760718 485761438 720 True 251.000000 381 80.290500 1046 1906 2 chr6A.!!$R1 860

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
501 520 0.179073 GGCGCCTCTCTATTTGCTGA 60.179 55.0 22.15 0.0 0.00 4.26 F
2109 2642 0.315251 GGGTTGCTTTTGGCTCAGTC 59.685 55.0 0.00 0.0 42.39 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2497 3189 0.811616 GGGACACCATCTAGCGCTTG 60.812 60.0 18.68 15.42 36.5 4.01 R
3292 3987 0.179111 GATCGGACCTCACGCATCAA 60.179 55.0 0.00 0.00 0.0 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 5.483685 ACTAGGACAAGTATGCAAAGTGA 57.516 39.130 0.00 0.00 0.00 3.41
54 55 1.533625 TGCAGATAGCCAAACACACC 58.466 50.000 0.00 0.00 44.83 4.16
56 57 2.162681 GCAGATAGCCAAACACACCTT 58.837 47.619 0.00 0.00 37.23 3.50
59 60 4.217550 GCAGATAGCCAAACACACCTTTAA 59.782 41.667 0.00 0.00 37.23 1.52
67 68 5.460646 CCAAACACACCTTTAATGTAGCTG 58.539 41.667 0.00 0.00 0.00 4.24
68 69 4.766404 AACACACCTTTAATGTAGCTGC 57.234 40.909 0.00 0.00 0.00 5.25
69 70 2.742053 ACACACCTTTAATGTAGCTGCG 59.258 45.455 0.00 0.00 0.00 5.18
72 73 2.747446 CACCTTTAATGTAGCTGCGGTT 59.253 45.455 0.00 0.00 0.00 4.44
73 74 3.190535 CACCTTTAATGTAGCTGCGGTTT 59.809 43.478 0.00 0.00 0.00 3.27
74 75 3.190535 ACCTTTAATGTAGCTGCGGTTTG 59.809 43.478 0.00 0.00 0.00 2.93
75 76 3.190535 CCTTTAATGTAGCTGCGGTTTGT 59.809 43.478 0.00 0.00 0.00 2.83
76 77 4.320935 CCTTTAATGTAGCTGCGGTTTGTT 60.321 41.667 0.00 0.00 0.00 2.83
77 78 4.839668 TTAATGTAGCTGCGGTTTGTTT 57.160 36.364 0.00 0.00 0.00 2.83
78 79 3.726291 AATGTAGCTGCGGTTTGTTTT 57.274 38.095 0.00 0.00 0.00 2.43
80 81 3.073144 TGTAGCTGCGGTTTGTTTTTC 57.927 42.857 0.00 0.00 0.00 2.29
82 83 2.208326 AGCTGCGGTTTGTTTTTCTG 57.792 45.000 0.00 0.00 0.00 3.02
83 84 1.202405 AGCTGCGGTTTGTTTTTCTGG 60.202 47.619 0.00 0.00 0.00 3.86
90 91 5.067936 TGCGGTTTGTTTTTCTGGAGAAATA 59.932 36.000 2.71 0.00 42.83 1.40
126 132 5.615925 AGGCGGAGAAATACTTTATCTGT 57.384 39.130 5.31 0.00 39.00 3.41
158 164 1.802508 GCGAACTTTGCCTGCAGTTTT 60.803 47.619 13.81 0.00 0.00 2.43
159 165 1.854126 CGAACTTTGCCTGCAGTTTTG 59.146 47.619 13.81 0.00 0.00 2.44
160 166 2.735126 CGAACTTTGCCTGCAGTTTTGT 60.735 45.455 13.81 1.98 0.00 2.83
161 167 3.261580 GAACTTTGCCTGCAGTTTTGTT 58.738 40.909 13.81 10.52 0.00 2.83
162 168 2.620242 ACTTTGCCTGCAGTTTTGTTG 58.380 42.857 13.81 0.00 0.00 3.33
165 171 2.007360 TGCCTGCAGTTTTGTTGTTG 57.993 45.000 13.81 0.00 0.00 3.33
168 174 2.094099 GCCTGCAGTTTTGTTGTTGTTG 59.906 45.455 13.81 0.00 0.00 3.33
171 177 4.484236 CTGCAGTTTTGTTGTTGTTGAGA 58.516 39.130 5.25 0.00 0.00 3.27
172 178 4.876125 TGCAGTTTTGTTGTTGTTGAGAA 58.124 34.783 0.00 0.00 0.00 2.87
173 179 5.477510 TGCAGTTTTGTTGTTGTTGAGAAT 58.522 33.333 0.00 0.00 0.00 2.40
282 298 0.401738 CTCCACCAATCGGCCCATAT 59.598 55.000 0.00 0.00 34.57 1.78
454 473 2.437413 GGTTCCAATCCAAGGTGAGAC 58.563 52.381 0.00 0.00 0.00 3.36
455 474 2.076863 GTTCCAATCCAAGGTGAGACG 58.923 52.381 0.00 0.00 0.00 4.18
492 511 2.604686 TCACCAAGGCGCCTCTCT 60.605 61.111 32.93 12.38 0.00 3.10
498 517 0.659957 CAAGGCGCCTCTCTATTTGC 59.340 55.000 32.93 0.00 0.00 3.68
501 520 0.179073 GGCGCCTCTCTATTTGCTGA 60.179 55.000 22.15 0.00 0.00 4.26
553 572 1.372872 GTTGGTTGGTTCATGCCGC 60.373 57.895 0.00 0.00 0.00 6.53
558 577 0.878416 GTTGGTTCATGCCGCTGTAA 59.122 50.000 0.00 0.00 0.00 2.41
559 578 1.135689 GTTGGTTCATGCCGCTGTAAG 60.136 52.381 0.00 0.00 0.00 2.34
561 580 1.271108 TGGTTCATGCCGCTGTAAGAA 60.271 47.619 0.00 0.00 34.07 2.52
562 581 1.130561 GGTTCATGCCGCTGTAAGAAC 59.869 52.381 5.92 5.92 34.07 3.01
563 582 2.076863 GTTCATGCCGCTGTAAGAACT 58.923 47.619 6.99 0.00 34.07 3.01
564 583 3.259064 GTTCATGCCGCTGTAAGAACTA 58.741 45.455 6.99 0.00 34.07 2.24
565 584 2.888594 TCATGCCGCTGTAAGAACTAC 58.111 47.619 0.00 0.00 34.07 2.73
566 585 2.496070 TCATGCCGCTGTAAGAACTACT 59.504 45.455 0.00 0.00 34.07 2.57
567 586 2.363788 TGCCGCTGTAAGAACTACTG 57.636 50.000 0.00 0.00 34.07 2.74
569 588 2.821378 TGCCGCTGTAAGAACTACTGTA 59.179 45.455 0.00 0.00 34.07 2.74
570 589 3.177487 GCCGCTGTAAGAACTACTGTAC 58.823 50.000 0.00 0.00 34.07 2.90
571 590 3.119566 GCCGCTGTAAGAACTACTGTACT 60.120 47.826 0.00 0.00 34.07 2.73
572 591 4.617762 GCCGCTGTAAGAACTACTGTACTT 60.618 45.833 0.00 0.00 34.07 2.24
573 592 5.467705 CCGCTGTAAGAACTACTGTACTTT 58.532 41.667 0.00 0.00 34.07 2.66
611 650 7.672983 TTGGTCATGTTAAAGATCAGTTCTC 57.327 36.000 0.00 0.00 31.78 2.87
612 651 7.009179 TGGTCATGTTAAAGATCAGTTCTCT 57.991 36.000 0.00 0.00 31.78 3.10
616 655 7.816995 GTCATGTTAAAGATCAGTTCTCTCTGT 59.183 37.037 0.00 0.00 36.85 3.41
621 660 2.760092 AGATCAGTTCTCTCTGTCAGCC 59.240 50.000 0.00 0.00 36.85 4.85
629 668 1.761784 CTCTCTGTCAGCCATTAGCCT 59.238 52.381 0.00 0.00 45.47 4.58
635 674 2.012673 GTCAGCCATTAGCCTCAACAG 58.987 52.381 0.00 0.00 45.47 3.16
636 675 1.630369 TCAGCCATTAGCCTCAACAGT 59.370 47.619 0.00 0.00 45.47 3.55
637 676 1.741706 CAGCCATTAGCCTCAACAGTG 59.258 52.381 0.00 0.00 45.47 3.66
638 677 1.352352 AGCCATTAGCCTCAACAGTGT 59.648 47.619 0.00 0.00 45.47 3.55
639 678 2.162681 GCCATTAGCCTCAACAGTGTT 58.837 47.619 1.64 1.64 34.35 3.32
640 679 2.095059 GCCATTAGCCTCAACAGTGTTG 60.095 50.000 26.87 26.87 34.35 3.33
641 680 3.149196 CCATTAGCCTCAACAGTGTTGT 58.851 45.455 30.05 16.75 39.87 3.32
642 681 6.055368 GCCATTAGCCTCAACAGTGTTGTT 62.055 45.833 30.05 18.39 41.25 2.83
643 682 4.037923 CCATTAGCCTCAACAGTGTTGTTT 59.962 41.667 30.05 18.11 45.01 2.83
671 710 2.158885 TGTGTGGAGAAATGTCGAACCA 60.159 45.455 0.00 0.00 0.00 3.67
676 715 1.464997 GAGAAATGTCGAACCAGTGGC 59.535 52.381 9.78 0.00 0.00 5.01
682 721 1.227823 TCGAACCAGTGGCTTGTGG 60.228 57.895 9.78 0.00 39.98 4.17
694 736 3.057946 GTGGCTTGTGGAGAAATCTCAAC 60.058 47.826 10.46 10.46 45.15 3.18
721 768 8.208903 AGTGGTACTTACTGTGTAATTCACTTT 58.791 33.333 3.11 1.00 46.27 2.66
744 792 9.199982 CTTTTGCATGAGAGTTTTTCAATGTAT 57.800 29.630 0.00 0.00 0.00 2.29
765 825 4.737855 TCCTGCTCTGTACATAAGTTCC 57.262 45.455 0.00 0.00 0.00 3.62
768 828 4.160439 CCTGCTCTGTACATAAGTTCCTGA 59.840 45.833 0.00 0.00 0.00 3.86
770 830 5.907207 TGCTCTGTACATAAGTTCCTGATC 58.093 41.667 0.00 0.00 0.00 2.92
782 842 9.346725 CATAAGTTCCTGATCTTTAAAACTTGC 57.653 33.333 15.85 0.00 37.48 4.01
783 843 7.588497 AAGTTCCTGATCTTTAAAACTTGCT 57.412 32.000 9.74 0.00 36.06 3.91
784 844 6.974965 AGTTCCTGATCTTTAAAACTTGCTG 58.025 36.000 0.00 0.00 0.00 4.41
785 845 6.547510 AGTTCCTGATCTTTAAAACTTGCTGT 59.452 34.615 0.00 0.00 0.00 4.40
786 846 6.959639 TCCTGATCTTTAAAACTTGCTGTT 57.040 33.333 0.00 0.00 41.29 3.16
855 915 9.890629 TTTGTTAGTCTCTTTGATATGCTGTAT 57.109 29.630 0.00 0.00 0.00 2.29
857 917 9.317936 TGTTAGTCTCTTTGATATGCTGTATTG 57.682 33.333 0.00 0.00 0.00 1.90
859 919 9.890629 TTAGTCTCTTTGATATGCTGTATTGTT 57.109 29.630 0.00 0.00 0.00 2.83
919 1226 2.418083 GGGGGCGATGCTTTCTTGG 61.418 63.158 0.00 0.00 0.00 3.61
928 1235 4.142600 GCGATGCTTTCTTGGTATTGACTT 60.143 41.667 0.00 0.00 0.00 3.01
1033 1344 7.331934 TCAAGTATGCTACTCTTTGATGTTGTC 59.668 37.037 0.00 0.00 38.26 3.18
1091 1416 8.286097 GCTACAATCTTACTTATTCCTGCAATC 58.714 37.037 0.00 0.00 0.00 2.67
1092 1417 7.573968 ACAATCTTACTTATTCCTGCAATCC 57.426 36.000 0.00 0.00 0.00 3.01
1514 1848 7.928706 AGTATAAGTGCAATGATCTGGTAGTTC 59.071 37.037 0.00 0.00 0.00 3.01
1545 1879 5.916318 TGCTTAAATATTTGCCCTGATTGG 58.084 37.500 11.05 0.00 0.00 3.16
1638 2113 8.825667 AATAATTTGGTTACCACATTGTCAAC 57.174 30.769 21.87 0.00 35.12 3.18
1742 2221 1.855213 GCAAGTGGATGTCTGCGCAA 61.855 55.000 13.05 0.00 0.00 4.85
1763 2242 5.686397 GCAATTCTCATCTCTGCTTAATTGC 59.314 40.000 12.39 12.39 45.71 3.56
1772 2251 6.307031 TCTCTGCTTAATTGCGTTTTAACA 57.693 33.333 0.00 0.00 35.36 2.41
1794 2277 1.562783 ACTCTGTACTCCCCTGCTTC 58.437 55.000 0.00 0.00 0.00 3.86
1795 2278 1.077993 ACTCTGTACTCCCCTGCTTCT 59.922 52.381 0.00 0.00 0.00 2.85
1983 2482 2.581354 GAGGTCCGTGATGCAGCT 59.419 61.111 2.53 0.00 0.00 4.24
2017 2516 4.013728 TCTGCGGTAATACTTTTGCCATT 58.986 39.130 0.00 0.00 0.00 3.16
2092 2610 5.305585 ACAAACATTACACTCACACTAGGG 58.694 41.667 0.00 0.00 0.00 3.53
2094 2612 5.562298 AACATTACACTCACACTAGGGTT 57.438 39.130 0.00 0.00 34.19 4.11
2098 2616 1.768870 ACACTCACACTAGGGTTGCTT 59.231 47.619 0.00 0.00 24.35 3.91
2109 2642 0.315251 GGGTTGCTTTTGGCTCAGTC 59.685 55.000 0.00 0.00 42.39 3.51
2120 2653 3.334583 TGGCTCAGTCAGTATTGAACC 57.665 47.619 0.00 0.00 34.49 3.62
2283 2934 2.862541 TCCATGTAATATGCACCTGCC 58.137 47.619 0.00 0.00 41.18 4.85
2284 2935 2.174424 TCCATGTAATATGCACCTGCCA 59.826 45.455 0.00 0.00 41.18 4.92
2285 2936 3.159472 CCATGTAATATGCACCTGCCAT 58.841 45.455 0.00 0.00 41.18 4.40
2286 2937 4.042684 TCCATGTAATATGCACCTGCCATA 59.957 41.667 0.00 0.00 41.18 2.74
2289 2940 6.071221 CCATGTAATATGCACCTGCCATATTT 60.071 38.462 10.71 0.00 41.18 1.40
2290 2941 6.573664 TGTAATATGCACCTGCCATATTTC 57.426 37.500 10.71 7.52 41.18 2.17
2291 2942 6.306199 TGTAATATGCACCTGCCATATTTCT 58.694 36.000 10.71 0.00 41.18 2.52
2293 2944 5.717078 ATATGCACCTGCCATATTTCTTG 57.283 39.130 0.00 0.00 41.18 3.02
2294 2945 3.084536 TGCACCTGCCATATTTCTTGA 57.915 42.857 0.00 0.00 41.18 3.02
2296 2947 2.754552 GCACCTGCCATATTTCTTGACA 59.245 45.455 0.00 0.00 34.31 3.58
2297 2948 3.382546 GCACCTGCCATATTTCTTGACAT 59.617 43.478 0.00 0.00 34.31 3.06
2298 2949 4.498682 GCACCTGCCATATTTCTTGACATC 60.499 45.833 0.00 0.00 34.31 3.06
2299 2950 4.641541 CACCTGCCATATTTCTTGACATCA 59.358 41.667 0.00 0.00 0.00 3.07
2351 3040 3.853207 AGGTCCTTACTGTGGTAACTGA 58.147 45.455 0.00 0.00 34.61 3.41
2435 3127 1.978580 AGGTGACGAAATCCCAGAAGT 59.021 47.619 0.00 0.00 0.00 3.01
2511 3203 2.202932 CGGCAAGCGCTAGATGGT 60.203 61.111 12.05 0.00 38.60 3.55
2520 3212 1.227380 GCTAGATGGTGTCCCTGCG 60.227 63.158 0.00 0.00 0.00 5.18
2617 3309 0.034756 TGTTGCTGTCGGTATGCAGT 59.965 50.000 0.00 0.00 38.01 4.40
2695 3387 8.851960 CTCATCAATGTGAGATTGTTTTATGG 57.148 34.615 2.11 0.00 46.77 2.74
2716 3408 5.441500 TGGTTATCTGGTTGTTGTTTCAGA 58.558 37.500 0.00 0.00 40.04 3.27
2744 3436 1.757682 AGTTGGTGTTTCTTCCGCAA 58.242 45.000 0.00 0.00 0.00 4.85
2815 3508 5.293569 CCTTGTAACTGGGTGTTAATCGATC 59.706 44.000 0.00 0.00 42.12 3.69
2818 3511 2.906354 ACTGGGTGTTAATCGATCTGC 58.094 47.619 0.00 0.00 0.00 4.26
2839 3532 1.444212 CACGGCCTTCAAAATGCGG 60.444 57.895 0.00 0.00 0.00 5.69
2860 3553 4.498009 CGGCCTTGAGCTGGTTATTAATTG 60.498 45.833 0.00 0.00 44.85 2.32
2895 3588 3.311322 CGCCAATCGTGCCTTTAAGATTA 59.689 43.478 0.00 0.00 32.70 1.75
2908 3601 5.425577 TTTAAGATTACAACACGCAAGCA 57.574 34.783 0.00 0.00 45.62 3.91
2909 3602 2.969443 AGATTACAACACGCAAGCAC 57.031 45.000 0.00 0.00 45.62 4.40
2912 3605 3.253188 AGATTACAACACGCAAGCACATT 59.747 39.130 0.00 0.00 45.62 2.71
2920 3613 1.001378 ACGCAAGCACATTCTGGAAAC 60.001 47.619 0.00 0.00 45.62 2.78
2932 3625 7.031372 CACATTCTGGAAACGATCAATTGAAT 58.969 34.615 13.09 1.06 0.00 2.57
3010 3705 8.512138 GCAACCACAACTCTAATAATTAACTGT 58.488 33.333 0.00 0.00 0.00 3.55
3108 3803 9.859427 TTATGCTTAAATTTGTTGGATTCTCTG 57.141 29.630 0.00 0.00 0.00 3.35
3109 3804 6.690530 TGCTTAAATTTGTTGGATTCTCTGG 58.309 36.000 0.00 0.00 0.00 3.86
3110 3805 6.101997 GCTTAAATTTGTTGGATTCTCTGGG 58.898 40.000 0.00 0.00 0.00 4.45
3111 3806 6.295292 GCTTAAATTTGTTGGATTCTCTGGGT 60.295 38.462 0.00 0.00 0.00 4.51
3112 3807 7.610580 TTAAATTTGTTGGATTCTCTGGGTT 57.389 32.000 0.00 0.00 0.00 4.11
3113 3808 5.473066 AATTTGTTGGATTCTCTGGGTTG 57.527 39.130 0.00 0.00 0.00 3.77
3114 3809 3.874383 TTGTTGGATTCTCTGGGTTGA 57.126 42.857 0.00 0.00 0.00 3.18
3115 3810 4.387026 TTGTTGGATTCTCTGGGTTGAT 57.613 40.909 0.00 0.00 0.00 2.57
3116 3811 4.387026 TGTTGGATTCTCTGGGTTGATT 57.613 40.909 0.00 0.00 0.00 2.57
3117 3812 4.739793 TGTTGGATTCTCTGGGTTGATTT 58.260 39.130 0.00 0.00 0.00 2.17
3118 3813 5.147032 TGTTGGATTCTCTGGGTTGATTTT 58.853 37.500 0.00 0.00 0.00 1.82
3119 3814 5.243730 TGTTGGATTCTCTGGGTTGATTTTC 59.756 40.000 0.00 0.00 0.00 2.29
3120 3815 5.261040 TGGATTCTCTGGGTTGATTTTCT 57.739 39.130 0.00 0.00 0.00 2.52
3121 3816 5.644188 TGGATTCTCTGGGTTGATTTTCTT 58.356 37.500 0.00 0.00 0.00 2.52
3122 3817 6.077322 TGGATTCTCTGGGTTGATTTTCTTT 58.923 36.000 0.00 0.00 0.00 2.52
3123 3818 6.209391 TGGATTCTCTGGGTTGATTTTCTTTC 59.791 38.462 0.00 0.00 0.00 2.62
3124 3819 6.435591 GGATTCTCTGGGTTGATTTTCTTTCT 59.564 38.462 0.00 0.00 0.00 2.52
3125 3820 7.039434 GGATTCTCTGGGTTGATTTTCTTTCTT 60.039 37.037 0.00 0.00 0.00 2.52
3126 3821 7.660030 TTCTCTGGGTTGATTTTCTTTCTTT 57.340 32.000 0.00 0.00 0.00 2.52
3127 3822 7.660030 TCTCTGGGTTGATTTTCTTTCTTTT 57.340 32.000 0.00 0.00 0.00 2.27
3128 3823 8.760980 TCTCTGGGTTGATTTTCTTTCTTTTA 57.239 30.769 0.00 0.00 0.00 1.52
3129 3824 9.367160 TCTCTGGGTTGATTTTCTTTCTTTTAT 57.633 29.630 0.00 0.00 0.00 1.40
3130 3825 9.631452 CTCTGGGTTGATTTTCTTTCTTTTATC 57.369 33.333 0.00 0.00 0.00 1.75
3131 3826 9.142014 TCTGGGTTGATTTTCTTTCTTTTATCA 57.858 29.630 0.00 0.00 0.00 2.15
3132 3827 9.762933 CTGGGTTGATTTTCTTTCTTTTATCAA 57.237 29.630 0.00 0.00 31.63 2.57
3133 3828 9.541143 TGGGTTGATTTTCTTTCTTTTATCAAC 57.459 29.630 14.23 14.23 45.41 3.18
3134 3829 9.541143 GGGTTGATTTTCTTTCTTTTATCAACA 57.459 29.630 20.64 0.00 46.77 3.33
3188 3883 7.992180 AATCAATACATTTCAGCGAAAATCC 57.008 32.000 7.59 0.00 35.11 3.01
3189 3884 6.507958 TCAATACATTTCAGCGAAAATCCA 57.492 33.333 7.59 0.00 35.11 3.41
3190 3885 7.099266 TCAATACATTTCAGCGAAAATCCAT 57.901 32.000 7.59 0.00 35.11 3.41
3191 3886 7.546358 TCAATACATTTCAGCGAAAATCCATT 58.454 30.769 7.59 3.52 35.11 3.16
3192 3887 8.034215 TCAATACATTTCAGCGAAAATCCATTT 58.966 29.630 7.59 0.00 35.11 2.32
3193 3888 7.992180 ATACATTTCAGCGAAAATCCATTTC 57.008 32.000 7.59 0.00 43.32 2.17
3194 3889 6.029346 ACATTTCAGCGAAAATCCATTTCT 57.971 33.333 7.59 0.00 44.35 2.52
3195 3890 5.865552 ACATTTCAGCGAAAATCCATTTCTG 59.134 36.000 7.59 2.48 44.35 3.02
3196 3891 3.492421 TCAGCGAAAATCCATTTCTGC 57.508 42.857 0.00 8.58 44.35 4.26
3197 3892 2.819019 TCAGCGAAAATCCATTTCTGCA 59.181 40.909 14.91 0.00 44.35 4.41
3198 3893 2.919229 CAGCGAAAATCCATTTCTGCAC 59.081 45.455 14.91 0.00 44.35 4.57
3199 3894 2.094545 AGCGAAAATCCATTTCTGCACC 60.095 45.455 14.91 0.00 44.35 5.01
3200 3895 2.879826 CGAAAATCCATTTCTGCACCC 58.120 47.619 0.00 0.00 44.35 4.61
3201 3896 2.230992 CGAAAATCCATTTCTGCACCCA 59.769 45.455 0.00 0.00 44.35 4.51
3202 3897 3.119029 CGAAAATCCATTTCTGCACCCAT 60.119 43.478 0.00 0.00 44.35 4.00
3203 3898 3.899052 AAATCCATTTCTGCACCCATG 57.101 42.857 0.00 0.00 0.00 3.66
3204 3899 5.449135 GAAAATCCATTTCTGCACCCATGC 61.449 45.833 0.00 0.00 43.86 4.06
3205 3900 7.593899 GAAAATCCATTTCTGCACCCATGCT 62.594 44.000 0.41 0.00 44.71 3.79
3214 3909 2.104267 CACCCATGCTCATCTGCAC 58.896 57.895 0.00 0.00 46.33 4.57
3215 3910 1.077212 ACCCATGCTCATCTGCACC 60.077 57.895 0.00 0.00 46.33 5.01
3216 3911 2.184830 CCCATGCTCATCTGCACCG 61.185 63.158 0.00 0.00 46.33 4.94
3217 3912 2.184830 CCATGCTCATCTGCACCGG 61.185 63.158 0.00 0.00 46.33 5.28
3218 3913 2.515523 ATGCTCATCTGCACCGGC 60.516 61.111 0.00 0.00 46.33 6.13
3292 3987 6.800072 TTTTTCTTTGTGGGGTAGACAATT 57.200 33.333 0.00 0.00 33.41 2.32
3293 3988 6.800072 TTTTCTTTGTGGGGTAGACAATTT 57.200 33.333 0.00 0.00 33.41 1.82
3294 3989 5.782893 TTCTTTGTGGGGTAGACAATTTG 57.217 39.130 0.00 0.00 33.41 2.32
3295 3990 5.055265 TCTTTGTGGGGTAGACAATTTGA 57.945 39.130 2.79 0.00 33.41 2.69
3296 3991 5.640147 TCTTTGTGGGGTAGACAATTTGAT 58.360 37.500 2.79 0.00 33.41 2.57
3297 3992 5.476599 TCTTTGTGGGGTAGACAATTTGATG 59.523 40.000 2.79 0.00 33.41 3.07
3298 3993 3.088532 TGTGGGGTAGACAATTTGATGC 58.911 45.455 2.79 0.00 0.00 3.91
3299 3994 2.097466 GTGGGGTAGACAATTTGATGCG 59.903 50.000 2.79 0.00 0.00 4.73
3300 3995 2.290641 TGGGGTAGACAATTTGATGCGT 60.291 45.455 2.79 0.00 0.00 5.24
3301 3996 2.097466 GGGGTAGACAATTTGATGCGTG 59.903 50.000 2.79 0.00 0.00 5.34
3302 3997 3.006940 GGGTAGACAATTTGATGCGTGA 58.993 45.455 2.79 0.00 0.00 4.35
3303 3998 3.063997 GGGTAGACAATTTGATGCGTGAG 59.936 47.826 2.79 0.00 0.00 3.51
3304 3999 3.063997 GGTAGACAATTTGATGCGTGAGG 59.936 47.826 2.79 0.00 0.00 3.86
3305 4000 2.783135 AGACAATTTGATGCGTGAGGT 58.217 42.857 2.79 0.00 0.00 3.85
3306 4001 2.744202 AGACAATTTGATGCGTGAGGTC 59.256 45.455 2.79 0.00 0.00 3.85
3307 4002 1.812571 ACAATTTGATGCGTGAGGTCC 59.187 47.619 2.79 0.00 0.00 4.46
3308 4003 1.086696 AATTTGATGCGTGAGGTCCG 58.913 50.000 0.00 0.00 0.00 4.79
3309 4004 0.249120 ATTTGATGCGTGAGGTCCGA 59.751 50.000 0.00 0.00 0.00 4.55
3310 4005 0.249120 TTTGATGCGTGAGGTCCGAT 59.751 50.000 0.00 0.00 0.00 4.18
3311 4006 0.179111 TTGATGCGTGAGGTCCGATC 60.179 55.000 0.00 0.00 0.00 3.69
3312 4007 1.300233 GATGCGTGAGGTCCGATCC 60.300 63.158 0.00 0.00 0.00 3.36
3313 4008 2.016393 GATGCGTGAGGTCCGATCCA 62.016 60.000 0.00 0.00 0.00 3.41
3314 4009 1.613317 ATGCGTGAGGTCCGATCCAA 61.613 55.000 0.00 0.00 0.00 3.53
3315 4010 1.144057 GCGTGAGGTCCGATCCAAT 59.856 57.895 0.00 0.00 0.00 3.16
3316 4011 0.462047 GCGTGAGGTCCGATCCAATT 60.462 55.000 0.00 0.00 0.00 2.32
3317 4012 2.012051 GCGTGAGGTCCGATCCAATTT 61.012 52.381 0.00 0.00 0.00 1.82
3318 4013 2.356135 CGTGAGGTCCGATCCAATTTT 58.644 47.619 0.00 0.00 0.00 1.82
3319 4014 2.351726 CGTGAGGTCCGATCCAATTTTC 59.648 50.000 0.00 0.00 0.00 2.29
3320 4015 3.343617 GTGAGGTCCGATCCAATTTTCA 58.656 45.455 0.00 0.00 0.00 2.69
3321 4016 3.756434 GTGAGGTCCGATCCAATTTTCAA 59.244 43.478 0.00 0.00 0.00 2.69
3322 4017 4.217550 GTGAGGTCCGATCCAATTTTCAAA 59.782 41.667 0.00 0.00 0.00 2.69
3323 4018 5.016173 TGAGGTCCGATCCAATTTTCAAAT 58.984 37.500 0.00 0.00 0.00 2.32
3324 4019 5.125417 TGAGGTCCGATCCAATTTTCAAATC 59.875 40.000 0.00 0.00 0.00 2.17
3325 4020 5.016173 AGGTCCGATCCAATTTTCAAATCA 58.984 37.500 0.00 0.00 0.00 2.57
3326 4021 5.658190 AGGTCCGATCCAATTTTCAAATCAT 59.342 36.000 0.00 0.00 0.00 2.45
3327 4022 6.155049 AGGTCCGATCCAATTTTCAAATCATT 59.845 34.615 0.00 0.00 0.00 2.57
3328 4023 6.818142 GGTCCGATCCAATTTTCAAATCATTT 59.182 34.615 0.00 0.00 0.00 2.32
3329 4024 7.201548 GGTCCGATCCAATTTTCAAATCATTTG 60.202 37.037 3.46 3.46 41.96 2.32
3330 4025 6.817641 TCCGATCCAATTTTCAAATCATTTGG 59.182 34.615 10.30 0.00 40.98 3.28
3331 4026 6.817641 CCGATCCAATTTTCAAATCATTTGGA 59.182 34.615 10.30 0.00 40.98 3.53
3332 4027 7.201548 CCGATCCAATTTTCAAATCATTTGGAC 60.202 37.037 10.30 0.00 40.98 4.02
3333 4028 7.331440 CGATCCAATTTTCAAATCATTTGGACA 59.669 33.333 10.30 0.00 40.98 4.02
3334 4029 9.169592 GATCCAATTTTCAAATCATTTGGACAT 57.830 29.630 10.30 0.00 40.98 3.06
3335 4030 8.550710 TCCAATTTTCAAATCATTTGGACATC 57.449 30.769 10.30 0.00 40.98 3.06
3336 4031 8.377034 TCCAATTTTCAAATCATTTGGACATCT 58.623 29.630 10.30 0.00 40.98 2.90
3337 4032 8.447833 CCAATTTTCAAATCATTTGGACATCTG 58.552 33.333 10.30 2.60 40.98 2.90
3338 4033 9.210329 CAATTTTCAAATCATTTGGACATCTGA 57.790 29.630 10.30 0.00 40.98 3.27
3339 4034 8.997621 ATTTTCAAATCATTTGGACATCTGAG 57.002 30.769 10.30 0.00 40.98 3.35
3340 4035 6.519679 TTCAAATCATTTGGACATCTGAGG 57.480 37.500 10.30 0.00 40.98 3.86
3341 4036 5.818887 TCAAATCATTTGGACATCTGAGGA 58.181 37.500 10.30 0.00 40.98 3.71
3342 4037 5.884232 TCAAATCATTTGGACATCTGAGGAG 59.116 40.000 10.30 0.00 40.98 3.69
3343 4038 3.272574 TCATTTGGACATCTGAGGAGC 57.727 47.619 0.00 0.00 0.00 4.70
3344 4039 2.842496 TCATTTGGACATCTGAGGAGCT 59.158 45.455 0.00 0.00 0.00 4.09
3345 4040 3.118482 TCATTTGGACATCTGAGGAGCTC 60.118 47.826 4.71 4.71 0.00 4.09
3346 4041 2.244486 TTGGACATCTGAGGAGCTCT 57.756 50.000 14.64 0.00 0.00 4.09
3347 4042 1.774110 TGGACATCTGAGGAGCTCTC 58.226 55.000 14.64 9.73 42.74 3.20
3379 4074 7.815840 AAAAATTTGGGGGTCTGTAAAAATG 57.184 32.000 0.00 0.00 0.00 2.32
3380 4075 6.508030 AAATTTGGGGGTCTGTAAAAATGT 57.492 33.333 0.00 0.00 0.00 2.71
3381 4076 6.508030 AATTTGGGGGTCTGTAAAAATGTT 57.492 33.333 0.00 0.00 0.00 2.71
3382 4077 5.959583 TTTGGGGGTCTGTAAAAATGTTT 57.040 34.783 0.00 0.00 0.00 2.83
3383 4078 7.619512 ATTTGGGGGTCTGTAAAAATGTTTA 57.380 32.000 0.00 0.00 0.00 2.01
3384 4079 6.408107 TTGGGGGTCTGTAAAAATGTTTAC 57.592 37.500 11.06 11.06 46.31 2.01
3385 4080 5.707495 TGGGGGTCTGTAAAAATGTTTACT 58.293 37.500 17.45 0.00 46.29 2.24
3386 4081 5.536916 TGGGGGTCTGTAAAAATGTTTACTG 59.463 40.000 17.45 16.56 46.29 2.74
3387 4082 5.537295 GGGGGTCTGTAAAAATGTTTACTGT 59.463 40.000 17.45 0.00 46.29 3.55
3388 4083 6.041182 GGGGGTCTGTAAAAATGTTTACTGTT 59.959 38.462 17.45 0.00 46.29 3.16
3389 4084 7.143340 GGGGTCTGTAAAAATGTTTACTGTTC 58.857 38.462 17.45 13.68 46.29 3.18
3390 4085 7.201839 GGGGTCTGTAAAAATGTTTACTGTTCA 60.202 37.037 17.45 1.80 46.29 3.18
3391 4086 8.357402 GGGTCTGTAAAAATGTTTACTGTTCAT 58.643 33.333 17.45 0.00 46.29 2.57
3392 4087 9.180678 GGTCTGTAAAAATGTTTACTGTTCATG 57.819 33.333 17.45 0.00 46.29 3.07
3393 4088 9.730420 GTCTGTAAAAATGTTTACTGTTCATGT 57.270 29.630 17.45 0.00 46.29 3.21
3402 4097 9.515020 AATGTTTACTGTTCATGTACTGTTTTG 57.485 29.630 17.65 0.00 33.15 2.44
3403 4098 7.476667 TGTTTACTGTTCATGTACTGTTTTGG 58.523 34.615 17.65 0.00 33.15 3.28
3404 4099 7.121463 TGTTTACTGTTCATGTACTGTTTTGGT 59.879 33.333 17.65 0.00 33.15 3.67
3405 4100 5.751243 ACTGTTCATGTACTGTTTTGGTC 57.249 39.130 8.82 0.00 0.00 4.02
3406 4101 5.437060 ACTGTTCATGTACTGTTTTGGTCT 58.563 37.500 8.82 0.00 0.00 3.85
3407 4102 6.588204 ACTGTTCATGTACTGTTTTGGTCTA 58.412 36.000 8.82 0.00 0.00 2.59
3408 4103 7.051623 ACTGTTCATGTACTGTTTTGGTCTAA 58.948 34.615 8.82 0.00 0.00 2.10
3409 4104 7.719633 ACTGTTCATGTACTGTTTTGGTCTAAT 59.280 33.333 8.82 0.00 0.00 1.73
3410 4105 8.458573 TGTTCATGTACTGTTTTGGTCTAATT 57.541 30.769 4.01 0.00 0.00 1.40
3411 4106 8.908903 TGTTCATGTACTGTTTTGGTCTAATTT 58.091 29.630 4.01 0.00 0.00 1.82
3412 4107 9.180678 GTTCATGTACTGTTTTGGTCTAATTTG 57.819 33.333 0.00 0.00 0.00 2.32
3413 4108 8.458573 TCATGTACTGTTTTGGTCTAATTTGT 57.541 30.769 0.00 0.00 0.00 2.83
3414 4109 8.564574 TCATGTACTGTTTTGGTCTAATTTGTC 58.435 33.333 0.00 0.00 0.00 3.18
3415 4110 8.567948 CATGTACTGTTTTGGTCTAATTTGTCT 58.432 33.333 0.00 0.00 0.00 3.41
3416 4111 8.514330 TGTACTGTTTTGGTCTAATTTGTCTT 57.486 30.769 0.00 0.00 0.00 3.01
3417 4112 8.962679 TGTACTGTTTTGGTCTAATTTGTCTTT 58.037 29.630 0.00 0.00 0.00 2.52
3418 4113 9.797556 GTACTGTTTTGGTCTAATTTGTCTTTT 57.202 29.630 0.00 0.00 0.00 2.27
3442 4137 3.665544 GAGAGCTGCTCAGATGTCC 57.334 57.895 29.49 2.47 43.38 4.02
3443 4138 0.822811 GAGAGCTGCTCAGATGTCCA 59.177 55.000 29.49 0.00 43.38 4.02
3444 4139 1.206610 GAGAGCTGCTCAGATGTCCAA 59.793 52.381 29.49 0.00 43.38 3.53
3445 4140 1.627329 AGAGCTGCTCAGATGTCCAAA 59.373 47.619 29.49 0.00 32.06 3.28
3446 4141 2.239150 AGAGCTGCTCAGATGTCCAAAT 59.761 45.455 29.49 3.19 32.06 2.32
3447 4142 2.355132 GAGCTGCTCAGATGTCCAAATG 59.645 50.000 24.02 0.00 0.00 2.32
3448 4143 2.026542 AGCTGCTCAGATGTCCAAATGA 60.027 45.455 0.00 0.00 0.00 2.57
3449 4144 2.097142 GCTGCTCAGATGTCCAAATGAC 59.903 50.000 0.29 0.00 44.72 3.06
3450 4145 3.607741 CTGCTCAGATGTCCAAATGACT 58.392 45.455 0.00 0.00 44.75 3.41
3451 4146 4.008330 CTGCTCAGATGTCCAAATGACTT 58.992 43.478 0.00 0.00 44.75 3.01
3452 4147 3.754850 TGCTCAGATGTCCAAATGACTTG 59.245 43.478 0.00 0.00 44.75 3.16
3453 4148 4.005650 GCTCAGATGTCCAAATGACTTGA 58.994 43.478 0.00 0.00 44.75 3.02
3454 4149 4.456911 GCTCAGATGTCCAAATGACTTGAA 59.543 41.667 0.00 0.00 44.75 2.69
3455 4150 5.048504 GCTCAGATGTCCAAATGACTTGAAA 60.049 40.000 0.00 0.00 44.75 2.69
3456 4151 6.349944 GCTCAGATGTCCAAATGACTTGAAAT 60.350 38.462 0.00 0.00 44.75 2.17
3457 4152 7.528996 TCAGATGTCCAAATGACTTGAAATT 57.471 32.000 0.00 0.00 44.75 1.82
3458 4153 7.954835 TCAGATGTCCAAATGACTTGAAATTT 58.045 30.769 0.00 0.00 44.75 1.82
3459 4154 7.868922 TCAGATGTCCAAATGACTTGAAATTTG 59.131 33.333 0.00 0.00 44.75 2.32
3460 4155 7.654520 CAGATGTCCAAATGACTTGAAATTTGT 59.345 33.333 0.00 0.00 44.75 2.83
3461 4156 8.859090 AGATGTCCAAATGACTTGAAATTTGTA 58.141 29.630 0.00 0.00 44.75 2.41
3462 4157 9.132521 GATGTCCAAATGACTTGAAATTTGTAG 57.867 33.333 0.00 0.00 44.75 2.74
3463 4158 6.922957 TGTCCAAATGACTTGAAATTTGTAGC 59.077 34.615 0.00 0.00 44.75 3.58
3464 4159 6.088085 GTCCAAATGACTTGAAATTTGTAGCG 59.912 38.462 0.00 0.00 40.57 4.26
3465 4160 5.345741 CCAAATGACTTGAAATTTGTAGCGG 59.654 40.000 0.00 0.00 40.57 5.52
3466 4161 5.957842 AATGACTTGAAATTTGTAGCGGA 57.042 34.783 0.00 0.00 0.00 5.54
3467 4162 4.742438 TGACTTGAAATTTGTAGCGGAC 57.258 40.909 0.00 0.00 0.00 4.79
3468 4163 3.500680 TGACTTGAAATTTGTAGCGGACC 59.499 43.478 0.00 0.00 0.00 4.46
3469 4164 3.751518 ACTTGAAATTTGTAGCGGACCT 58.248 40.909 0.00 0.00 0.00 3.85
3470 4165 3.751698 ACTTGAAATTTGTAGCGGACCTC 59.248 43.478 0.00 0.00 0.00 3.85
3471 4166 3.410631 TGAAATTTGTAGCGGACCTCA 57.589 42.857 0.00 0.00 0.00 3.86
3472 4167 3.071479 TGAAATTTGTAGCGGACCTCAC 58.929 45.455 0.00 0.00 0.00 3.51
3473 4168 2.851263 AATTTGTAGCGGACCTCACA 57.149 45.000 0.00 0.00 0.00 3.58
3474 4169 2.094762 ATTTGTAGCGGACCTCACAC 57.905 50.000 0.00 0.00 0.00 3.82
3475 4170 0.753867 TTTGTAGCGGACCTCACACA 59.246 50.000 0.00 0.00 0.00 3.72
3476 4171 0.973632 TTGTAGCGGACCTCACACAT 59.026 50.000 0.00 0.00 0.00 3.21
3477 4172 0.530744 TGTAGCGGACCTCACACATC 59.469 55.000 0.00 0.00 0.00 3.06
3478 4173 0.530744 GTAGCGGACCTCACACATCA 59.469 55.000 0.00 0.00 0.00 3.07
3479 4174 1.067142 GTAGCGGACCTCACACATCAA 60.067 52.381 0.00 0.00 0.00 2.57
3480 4175 0.396435 AGCGGACCTCACACATCAAA 59.604 50.000 0.00 0.00 0.00 2.69
3481 4176 1.003580 AGCGGACCTCACACATCAAAT 59.996 47.619 0.00 0.00 0.00 2.32
3482 4177 1.812571 GCGGACCTCACACATCAAATT 59.187 47.619 0.00 0.00 0.00 1.82
3483 4178 2.414559 GCGGACCTCACACATCAAATTG 60.415 50.000 0.00 0.00 0.00 2.32
3484 4179 2.813754 CGGACCTCACACATCAAATTGT 59.186 45.455 0.00 0.00 0.00 2.71
3485 4180 3.120199 CGGACCTCACACATCAAATTGTC 60.120 47.826 0.00 0.00 0.00 3.18
3486 4181 4.074970 GGACCTCACACATCAAATTGTCT 58.925 43.478 0.00 0.00 0.00 3.41
3487 4182 5.245531 GGACCTCACACATCAAATTGTCTA 58.754 41.667 0.00 0.00 0.00 2.59
3488 4183 5.122396 GGACCTCACACATCAAATTGTCTAC 59.878 44.000 0.00 0.00 0.00 2.59
3489 4184 5.003804 ACCTCACACATCAAATTGTCTACC 58.996 41.667 0.00 0.00 0.00 3.18
3490 4185 5.003160 CCTCACACATCAAATTGTCTACCA 58.997 41.667 0.00 0.00 0.00 3.25
3491 4186 5.106555 CCTCACACATCAAATTGTCTACCAC 60.107 44.000 0.00 0.00 0.00 4.16
3492 4187 5.372373 TCACACATCAAATTGTCTACCACA 58.628 37.500 0.00 0.00 0.00 4.17
3493 4188 5.238432 TCACACATCAAATTGTCTACCACAC 59.762 40.000 0.00 0.00 33.41 3.82
3494 4189 5.008514 CACACATCAAATTGTCTACCACACA 59.991 40.000 0.00 0.00 33.41 3.72
3495 4190 5.592282 ACACATCAAATTGTCTACCACACAA 59.408 36.000 0.00 0.00 38.12 3.33
3496 4191 6.096141 ACACATCAAATTGTCTACCACACAAA 59.904 34.615 0.00 0.00 37.30 2.83
3497 4192 7.147312 CACATCAAATTGTCTACCACACAAAT 58.853 34.615 0.00 0.00 37.30 2.32
3498 4193 7.652909 CACATCAAATTGTCTACCACACAAATT 59.347 33.333 0.00 0.00 37.30 1.82
3499 4194 8.203485 ACATCAAATTGTCTACCACACAAATTT 58.797 29.630 0.00 0.00 37.30 1.82
3500 4195 9.044150 CATCAAATTGTCTACCACACAAATTTT 57.956 29.630 0.00 0.00 37.30 1.82
3506 4201 8.879342 TTGTCTACCACACAAATTTTATTTGG 57.121 30.769 14.55 0.00 33.41 3.28
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 4.829064 TTGTCACTTTGCATACTTGTCC 57.171 40.909 0.00 0.00 0.00 4.02
32 33 3.012518 GTGTGTTTGGCTATCTGCATCT 58.987 45.455 0.00 0.00 45.15 2.90
37 38 5.957842 TTAAAGGTGTGTTTGGCTATCTG 57.042 39.130 0.00 0.00 0.00 2.90
40 41 6.127730 GCTACATTAAAGGTGTGTTTGGCTAT 60.128 38.462 0.00 0.00 0.00 2.97
43 44 4.022329 AGCTACATTAAAGGTGTGTTTGGC 60.022 41.667 0.00 0.00 0.00 4.52
54 55 4.419522 ACAAACCGCAGCTACATTAAAG 57.580 40.909 0.00 0.00 0.00 1.85
56 57 4.839668 AAACAAACCGCAGCTACATTAA 57.160 36.364 0.00 0.00 0.00 1.40
59 60 3.317993 AGAAAAACAAACCGCAGCTACAT 59.682 39.130 0.00 0.00 0.00 2.29
67 68 3.430333 TTCTCCAGAAAAACAAACCGC 57.570 42.857 0.00 0.00 0.00 5.68
68 69 6.735130 AGTATTTCTCCAGAAAAACAAACCG 58.265 36.000 5.86 0.00 45.81 4.44
69 70 8.942338 AAAGTATTTCTCCAGAAAAACAAACC 57.058 30.769 5.86 0.00 45.81 3.27
72 73 9.416284 AGGTAAAGTATTTCTCCAGAAAAACAA 57.584 29.630 5.86 0.00 45.81 2.83
73 74 8.990163 AGGTAAAGTATTTCTCCAGAAAAACA 57.010 30.769 5.86 0.00 45.81 2.83
104 105 5.615925 ACAGATAAAGTATTTCTCCGCCT 57.384 39.130 0.00 0.00 40.09 5.52
105 106 6.514063 ACTACAGATAAAGTATTTCTCCGCC 58.486 40.000 0.00 0.00 40.09 6.13
106 107 8.421673 AAACTACAGATAAAGTATTTCTCCGC 57.578 34.615 0.00 0.00 40.09 5.54
147 153 2.008752 ACAACAACAAAACTGCAGGC 57.991 45.000 19.93 0.00 0.00 4.85
148 154 3.583806 TCAACAACAACAAAACTGCAGG 58.416 40.909 19.93 1.96 0.00 4.85
149 155 4.484236 TCTCAACAACAACAAAACTGCAG 58.516 39.130 13.48 13.48 0.00 4.41
158 164 8.402472 CAGGTAAAGTTATTCTCAACAACAACA 58.598 33.333 0.00 0.00 0.00 3.33
159 165 7.378728 GCAGGTAAAGTTATTCTCAACAACAAC 59.621 37.037 0.00 0.00 0.00 3.32
160 166 7.067615 TGCAGGTAAAGTTATTCTCAACAACAA 59.932 33.333 0.00 0.00 0.00 2.83
161 167 6.544197 TGCAGGTAAAGTTATTCTCAACAACA 59.456 34.615 0.00 0.00 0.00 3.33
162 168 6.966021 TGCAGGTAAAGTTATTCTCAACAAC 58.034 36.000 0.00 0.00 0.00 3.32
165 171 5.412904 AGCTGCAGGTAAAGTTATTCTCAAC 59.587 40.000 18.63 0.00 0.00 3.18
168 174 7.334671 AGTTTAGCTGCAGGTAAAGTTATTCTC 59.665 37.037 38.16 26.98 44.49 2.87
435 454 2.076863 CGTCTCACCTTGGATTGGAAC 58.923 52.381 0.00 0.00 0.00 3.62
454 473 1.741770 CGACTGGGGAAAAGAGCCG 60.742 63.158 0.00 0.00 0.00 5.52
455 474 0.673956 GTCGACTGGGGAAAAGAGCC 60.674 60.000 8.70 0.00 0.00 4.70
492 511 7.413328 GCATATGACGCAATCTATCAGCAAATA 60.413 37.037 6.97 0.00 0.00 1.40
498 517 4.496121 CGCATATGACGCAATCTATCAG 57.504 45.455 6.97 0.00 0.00 2.90
553 572 9.095065 ACAAACAAAGTACAGTAGTTCTTACAG 57.905 33.333 0.88 0.00 34.74 2.74
558 577 9.257651 GATACACAAACAAAGTACAGTAGTTCT 57.742 33.333 0.88 0.00 0.00 3.01
559 578 9.037737 TGATACACAAACAAAGTACAGTAGTTC 57.962 33.333 0.88 0.00 0.00 3.01
561 580 9.555727 AATGATACACAAACAAAGTACAGTAGT 57.444 29.630 0.00 0.00 0.00 2.73
564 583 8.134895 CCAAATGATACACAAACAAAGTACAGT 58.865 33.333 0.00 0.00 0.00 3.55
565 584 8.134895 ACCAAATGATACACAAACAAAGTACAG 58.865 33.333 0.00 0.00 0.00 2.74
566 585 8.001881 ACCAAATGATACACAAACAAAGTACA 57.998 30.769 0.00 0.00 0.00 2.90
567 586 8.132362 TGACCAAATGATACACAAACAAAGTAC 58.868 33.333 0.00 0.00 0.00 2.73
569 588 7.106439 TGACCAAATGATACACAAACAAAGT 57.894 32.000 0.00 0.00 0.00 2.66
570 589 7.652909 ACATGACCAAATGATACACAAACAAAG 59.347 33.333 0.00 0.00 0.00 2.77
571 590 7.495901 ACATGACCAAATGATACACAAACAAA 58.504 30.769 0.00 0.00 0.00 2.83
572 591 7.048629 ACATGACCAAATGATACACAAACAA 57.951 32.000 0.00 0.00 0.00 2.83
573 592 6.647334 ACATGACCAAATGATACACAAACA 57.353 33.333 0.00 0.00 0.00 2.83
621 660 4.836125 AACAACACTGTTGAGGCTAATG 57.164 40.909 25.50 0.00 44.28 1.90
642 681 5.398603 ACATTTCTCCACACACACAAAAA 57.601 34.783 0.00 0.00 0.00 1.94
643 682 4.438065 CGACATTTCTCCACACACACAAAA 60.438 41.667 0.00 0.00 0.00 2.44
647 686 2.479837 TCGACATTTCTCCACACACAC 58.520 47.619 0.00 0.00 0.00 3.82
671 710 2.373169 TGAGATTTCTCCACAAGCCACT 59.627 45.455 5.17 0.00 42.20 4.00
676 715 4.214971 CCACTGTTGAGATTTCTCCACAAG 59.785 45.833 13.54 9.86 44.59 3.16
682 721 7.329717 CAGTAAGTACCACTGTTGAGATTTCTC 59.670 40.741 14.32 0.46 39.71 2.87
721 768 7.177216 AGGATACATTGAAAAACTCTCATGCAA 59.823 33.333 0.00 0.00 41.41 4.08
744 792 4.160439 CAGGAACTTATGTACAGAGCAGGA 59.840 45.833 0.33 0.00 34.60 3.86
797 857 9.203421 CCGAACTACAGTGCATCATTATATTAA 57.797 33.333 0.00 0.00 0.00 1.40
798 858 8.364894 ACCGAACTACAGTGCATCATTATATTA 58.635 33.333 0.00 0.00 0.00 0.98
799 859 7.217200 ACCGAACTACAGTGCATCATTATATT 58.783 34.615 0.00 0.00 0.00 1.28
800 860 6.759272 ACCGAACTACAGTGCATCATTATAT 58.241 36.000 0.00 0.00 0.00 0.86
822 882 6.445357 TCAAAGAGACTAACAAACCAAACC 57.555 37.500 0.00 0.00 0.00 3.27
855 915 1.606668 CCTTGCTGCCTCGTTAAACAA 59.393 47.619 0.00 0.00 0.00 2.83
857 917 1.235724 ACCTTGCTGCCTCGTTAAAC 58.764 50.000 0.00 0.00 0.00 2.01
859 919 1.877443 GAAACCTTGCTGCCTCGTTAA 59.123 47.619 0.00 0.00 0.00 2.01
919 1226 6.765989 TCAGCACCCACAATATAAGTCAATAC 59.234 38.462 0.00 0.00 0.00 1.89
928 1235 6.475504 CAAGGATATCAGCACCCACAATATA 58.524 40.000 4.83 0.00 0.00 0.86
1033 1344 9.203421 GTTTTACAAATCTTTTAACATCCCCAG 57.797 33.333 0.00 0.00 0.00 4.45
1092 1417 4.677514 CAGAGCTCTGTCCTGTATGAACAG 60.678 50.000 31.71 3.97 44.06 3.16
1514 1848 4.512571 GGCAAATATTTAAGCAGGCCAATG 59.487 41.667 16.20 0.00 39.88 2.82
1545 1879 7.095313 GCCACTAACTACCAGAAAAGAAACTAC 60.095 40.741 0.00 0.00 0.00 2.73
1685 2160 9.466497 AGGAATGAAAACTACACATGAATACAT 57.534 29.630 0.00 0.00 37.19 2.29
1686 2161 8.862325 AGGAATGAAAACTACACATGAATACA 57.138 30.769 0.00 0.00 0.00 2.29
1689 2164 9.480053 CAAAAGGAATGAAAACTACACATGAAT 57.520 29.630 0.00 0.00 0.00 2.57
1690 2165 7.437862 GCAAAAGGAATGAAAACTACACATGAA 59.562 33.333 0.00 0.00 0.00 2.57
1742 2221 5.121811 ACGCAATTAAGCAGAGATGAGAAT 58.878 37.500 0.00 0.00 0.00 2.40
1772 2251 2.339769 AGCAGGGGAGTACAGAGTTTT 58.660 47.619 0.00 0.00 0.00 2.43
2011 2510 1.999648 AGGAGTCAAAAGCAATGGCA 58.000 45.000 0.00 0.00 44.61 4.92
2017 2516 6.946340 TCACAATATCTAGGAGTCAAAAGCA 58.054 36.000 0.00 0.00 0.00 3.91
2066 2566 5.403897 AGTGTGAGTGTAATGTTTGTTCG 57.596 39.130 0.00 0.00 0.00 3.95
2098 2616 4.072131 GGTTCAATACTGACTGAGCCAAA 58.928 43.478 0.66 0.00 41.27 3.28
2120 2653 4.400251 AGTCAGGCATTAAATCACCACATG 59.600 41.667 0.00 0.00 0.00 3.21
2187 2720 8.752005 AATTAGAGCAACCTTCTATAATGCAA 57.248 30.769 0.00 0.00 39.42 4.08
2342 3031 8.768501 ATCTCACTGTTATAGATCAGTTACCA 57.231 34.615 0.00 0.00 42.05 3.25
2351 3040 6.294453 CGCTCCTTGATCTCACTGTTATAGAT 60.294 42.308 0.00 0.00 32.70 1.98
2497 3189 0.811616 GGGACACCATCTAGCGCTTG 60.812 60.000 18.68 15.42 36.50 4.01
2520 3212 7.029563 ACTAGTTCAAAATTTCGCATTGATCC 58.970 34.615 0.00 0.00 33.45 3.36
2585 3277 0.183492 AGCAACAGGAGGTTTGAGCA 59.817 50.000 0.00 0.00 37.72 4.26
2596 3288 0.673333 TGCATACCGACAGCAACAGG 60.673 55.000 0.00 0.00 34.97 4.00
2617 3309 0.322098 CCGGTTTGTGCACCCAGATA 60.322 55.000 15.69 0.00 32.48 1.98
2695 3387 8.755018 CAAAATCTGAAACAACAACCAGATAAC 58.245 33.333 0.00 0.00 43.29 1.89
2716 3408 6.238648 CGGAAGAAACACCAACTAGACAAAAT 60.239 38.462 0.00 0.00 0.00 1.82
2744 3436 2.618241 ACAGACAAACATCGCAATGTGT 59.382 40.909 0.00 0.00 45.48 3.72
2752 3444 1.986378 GGAGACGACAGACAAACATCG 59.014 52.381 0.00 0.00 40.39 3.84
2818 3511 1.444212 CATTTTGAAGGCCGTGCGG 60.444 57.895 6.22 6.22 38.57 5.69
2828 3521 0.038343 GCTCAAGGCCGCATTTTGAA 60.038 50.000 5.92 0.00 31.11 2.69
2832 3525 2.345760 CCAGCTCAAGGCCGCATTT 61.346 57.895 0.00 0.00 43.05 2.32
2839 3532 5.835113 TCAATTAATAACCAGCTCAAGGC 57.165 39.130 0.00 0.00 42.19 4.35
2877 3570 6.608610 GTGTTGTAATCTTAAAGGCACGATT 58.391 36.000 0.00 0.00 0.00 3.34
2895 3588 1.024271 AGAATGTGCTTGCGTGTTGT 58.976 45.000 0.00 0.00 0.00 3.32
2908 3601 6.573664 TTCAATTGATCGTTTCCAGAATGT 57.426 33.333 9.40 0.00 0.00 2.71
2909 3602 7.756272 TCAATTCAATTGATCGTTTCCAGAATG 59.244 33.333 8.85 0.00 43.84 2.67
2912 3605 6.816134 TCAATTCAATTGATCGTTTCCAGA 57.184 33.333 8.85 0.00 43.84 3.86
2932 3625 1.064611 TCCACGGGGTCAAACTTTCAA 60.065 47.619 2.12 0.00 34.93 2.69
2976 3671 2.158623 AGAGTTGTGGTTGCTGATGGAA 60.159 45.455 0.00 0.00 0.00 3.53
3096 3791 5.478332 AGAAAATCAACCCAGAGAATCCAAC 59.522 40.000 0.00 0.00 33.66 3.77
3099 3794 6.435591 AGAAAGAAAATCAACCCAGAGAATCC 59.564 38.462 0.00 0.00 33.66 3.01
3101 3796 7.846101 AAGAAAGAAAATCAACCCAGAGAAT 57.154 32.000 0.00 0.00 0.00 2.40
3102 3797 7.660030 AAAGAAAGAAAATCAACCCAGAGAA 57.340 32.000 0.00 0.00 0.00 2.87
3104 3799 9.631452 GATAAAAGAAAGAAAATCAACCCAGAG 57.369 33.333 0.00 0.00 0.00 3.35
3105 3800 9.142014 TGATAAAAGAAAGAAAATCAACCCAGA 57.858 29.630 0.00 0.00 0.00 3.86
3106 3801 9.762933 TTGATAAAAGAAAGAAAATCAACCCAG 57.237 29.630 0.00 0.00 30.59 4.45
3107 3802 9.541143 GTTGATAAAAGAAAGAAAATCAACCCA 57.459 29.630 12.67 0.00 43.53 4.51
3108 3803 9.541143 TGTTGATAAAAGAAAGAAAATCAACCC 57.459 29.630 18.23 1.70 46.38 4.11
3162 3857 8.872845 GGATTTTCGCTGAAATGTATTGATTTT 58.127 29.630 4.91 0.00 31.34 1.82
3163 3858 8.034215 TGGATTTTCGCTGAAATGTATTGATTT 58.966 29.630 4.91 0.00 31.34 2.17
3164 3859 7.546358 TGGATTTTCGCTGAAATGTATTGATT 58.454 30.769 4.91 0.00 31.34 2.57
3165 3860 7.099266 TGGATTTTCGCTGAAATGTATTGAT 57.901 32.000 4.91 0.00 31.34 2.57
3166 3861 6.507958 TGGATTTTCGCTGAAATGTATTGA 57.492 33.333 4.91 0.00 31.34 2.57
3167 3862 7.760131 AATGGATTTTCGCTGAAATGTATTG 57.240 32.000 4.91 0.00 31.34 1.90
3168 3863 8.253113 AGAAATGGATTTTCGCTGAAATGTATT 58.747 29.630 4.91 1.54 46.89 1.89
3169 3864 7.703621 CAGAAATGGATTTTCGCTGAAATGTAT 59.296 33.333 4.91 0.00 46.89 2.29
3170 3865 7.028962 CAGAAATGGATTTTCGCTGAAATGTA 58.971 34.615 4.91 0.00 46.89 2.29
3171 3866 5.865552 CAGAAATGGATTTTCGCTGAAATGT 59.134 36.000 4.91 0.00 46.89 2.71
3172 3867 5.220340 GCAGAAATGGATTTTCGCTGAAATG 60.220 40.000 0.00 0.19 46.89 2.32
3173 3868 4.866486 GCAGAAATGGATTTTCGCTGAAAT 59.134 37.500 0.00 0.14 46.89 2.17
3174 3869 4.236935 GCAGAAATGGATTTTCGCTGAAA 58.763 39.130 0.00 0.55 46.89 2.69
3175 3870 3.255395 TGCAGAAATGGATTTTCGCTGAA 59.745 39.130 0.00 0.00 46.89 3.02
3176 3871 2.819019 TGCAGAAATGGATTTTCGCTGA 59.181 40.909 0.00 0.00 46.89 4.26
3177 3872 2.919229 GTGCAGAAATGGATTTTCGCTG 59.081 45.455 0.00 0.00 46.89 5.18
3178 3873 2.094545 GGTGCAGAAATGGATTTTCGCT 60.095 45.455 0.00 0.00 46.89 4.93
3179 3874 2.262211 GGTGCAGAAATGGATTTTCGC 58.738 47.619 0.00 0.00 46.89 4.70
3180 3875 2.230992 TGGGTGCAGAAATGGATTTTCG 59.769 45.455 0.00 0.00 46.89 3.46
3181 3876 3.959535 TGGGTGCAGAAATGGATTTTC 57.040 42.857 0.00 0.00 43.45 2.29
3182 3877 4.210724 CATGGGTGCAGAAATGGATTTT 57.789 40.909 0.00 0.00 0.00 1.82
3183 3878 3.899052 CATGGGTGCAGAAATGGATTT 57.101 42.857 0.00 0.00 0.00 2.17
3196 3891 4.649845 TGCAGATGAGCATGGGTG 57.350 55.556 0.00 0.00 40.11 4.61
3212 3907 2.899044 TTTTTCTTCGGCGCCGGTG 61.899 57.895 44.95 35.21 40.25 4.94
3213 3908 2.592287 TTTTTCTTCGGCGCCGGT 60.592 55.556 44.95 0.00 40.25 5.28
3269 3964 6.800072 AATTGTCTACCCCACAAAGAAAAA 57.200 33.333 0.00 0.00 37.30 1.94
3270 3965 6.381420 TCAAATTGTCTACCCCACAAAGAAAA 59.619 34.615 0.00 0.00 37.30 2.29
3271 3966 5.894393 TCAAATTGTCTACCCCACAAAGAAA 59.106 36.000 0.00 0.00 37.30 2.52
3272 3967 5.450453 TCAAATTGTCTACCCCACAAAGAA 58.550 37.500 0.00 0.00 37.30 2.52
3273 3968 5.055265 TCAAATTGTCTACCCCACAAAGA 57.945 39.130 0.00 0.00 37.30 2.52
3274 3969 5.713025 CATCAAATTGTCTACCCCACAAAG 58.287 41.667 0.00 0.00 37.30 2.77
3275 3970 4.021544 GCATCAAATTGTCTACCCCACAAA 60.022 41.667 0.00 0.00 37.30 2.83
3276 3971 3.509575 GCATCAAATTGTCTACCCCACAA 59.490 43.478 0.00 0.00 38.12 3.33
3277 3972 3.088532 GCATCAAATTGTCTACCCCACA 58.911 45.455 0.00 0.00 0.00 4.17
3278 3973 2.097466 CGCATCAAATTGTCTACCCCAC 59.903 50.000 0.00 0.00 0.00 4.61
3279 3974 2.290641 ACGCATCAAATTGTCTACCCCA 60.291 45.455 0.00 0.00 0.00 4.96
3280 3975 2.097466 CACGCATCAAATTGTCTACCCC 59.903 50.000 0.00 0.00 0.00 4.95
3281 3976 3.006940 TCACGCATCAAATTGTCTACCC 58.993 45.455 0.00 0.00 0.00 3.69
3282 3977 3.063997 CCTCACGCATCAAATTGTCTACC 59.936 47.826 0.00 0.00 0.00 3.18
3283 3978 3.684788 ACCTCACGCATCAAATTGTCTAC 59.315 43.478 0.00 0.00 0.00 2.59
3284 3979 3.932710 GACCTCACGCATCAAATTGTCTA 59.067 43.478 0.00 0.00 0.00 2.59
3285 3980 2.744202 GACCTCACGCATCAAATTGTCT 59.256 45.455 0.00 0.00 0.00 3.41
3286 3981 2.159517 GGACCTCACGCATCAAATTGTC 60.160 50.000 0.00 0.00 0.00 3.18
3287 3982 1.812571 GGACCTCACGCATCAAATTGT 59.187 47.619 0.00 0.00 0.00 2.71
3288 3983 1.202065 CGGACCTCACGCATCAAATTG 60.202 52.381 0.00 0.00 0.00 2.32
3289 3984 1.086696 CGGACCTCACGCATCAAATT 58.913 50.000 0.00 0.00 0.00 1.82
3290 3985 0.249120 TCGGACCTCACGCATCAAAT 59.751 50.000 0.00 0.00 0.00 2.32
3291 3986 0.249120 ATCGGACCTCACGCATCAAA 59.751 50.000 0.00 0.00 0.00 2.69
3292 3987 0.179111 GATCGGACCTCACGCATCAA 60.179 55.000 0.00 0.00 0.00 2.57
3293 3988 1.437573 GATCGGACCTCACGCATCA 59.562 57.895 0.00 0.00 0.00 3.07
3294 3989 1.300233 GGATCGGACCTCACGCATC 60.300 63.158 0.00 0.00 0.00 3.91
3295 3990 1.613317 TTGGATCGGACCTCACGCAT 61.613 55.000 0.00 0.00 0.00 4.73
3296 3991 1.613317 ATTGGATCGGACCTCACGCA 61.613 55.000 0.00 0.00 0.00 5.24
3297 3992 0.462047 AATTGGATCGGACCTCACGC 60.462 55.000 0.00 0.00 0.00 5.34
3298 3993 2.024176 AAATTGGATCGGACCTCACG 57.976 50.000 0.00 0.00 0.00 4.35
3299 3994 3.343617 TGAAAATTGGATCGGACCTCAC 58.656 45.455 0.00 0.00 0.00 3.51
3300 3995 3.712016 TGAAAATTGGATCGGACCTCA 57.288 42.857 0.00 0.00 0.00 3.86
3301 3996 5.125417 TGATTTGAAAATTGGATCGGACCTC 59.875 40.000 0.00 0.00 0.00 3.85
3302 3997 5.016173 TGATTTGAAAATTGGATCGGACCT 58.984 37.500 0.00 0.00 0.00 3.85
3303 3998 5.323371 TGATTTGAAAATTGGATCGGACC 57.677 39.130 0.00 0.00 0.00 4.46
3304 3999 7.201548 CCAAATGATTTGAAAATTGGATCGGAC 60.202 37.037 18.82 0.00 43.26 4.79
3305 4000 6.817641 CCAAATGATTTGAAAATTGGATCGGA 59.182 34.615 18.82 0.00 43.26 4.55
3306 4001 6.817641 TCCAAATGATTTGAAAATTGGATCGG 59.182 34.615 18.82 0.00 43.26 4.18
3307 4002 7.331440 TGTCCAAATGATTTGAAAATTGGATCG 59.669 33.333 18.82 0.00 43.26 3.69
3308 4003 8.550710 TGTCCAAATGATTTGAAAATTGGATC 57.449 30.769 18.82 11.83 43.26 3.36
3309 4004 9.169592 GATGTCCAAATGATTTGAAAATTGGAT 57.830 29.630 18.82 6.24 43.26 3.41
3310 4005 8.377034 AGATGTCCAAATGATTTGAAAATTGGA 58.623 29.630 18.82 4.03 43.26 3.53
3311 4006 8.447833 CAGATGTCCAAATGATTTGAAAATTGG 58.552 33.333 18.82 1.54 43.26 3.16
3312 4007 9.210329 TCAGATGTCCAAATGATTTGAAAATTG 57.790 29.630 18.82 9.76 43.26 2.32
3313 4008 9.431887 CTCAGATGTCCAAATGATTTGAAAATT 57.568 29.630 18.82 0.50 43.26 1.82
3314 4009 8.038944 CCTCAGATGTCCAAATGATTTGAAAAT 58.961 33.333 18.82 0.00 43.26 1.82
3315 4010 7.233144 TCCTCAGATGTCCAAATGATTTGAAAA 59.767 33.333 18.82 0.00 43.26 2.29
3316 4011 6.720748 TCCTCAGATGTCCAAATGATTTGAAA 59.279 34.615 18.82 4.37 43.26 2.69
3317 4012 6.247676 TCCTCAGATGTCCAAATGATTTGAA 58.752 36.000 18.82 0.00 43.26 2.69
3318 4013 5.818887 TCCTCAGATGTCCAAATGATTTGA 58.181 37.500 18.82 0.00 43.26 2.69
3319 4014 5.450137 GCTCCTCAGATGTCCAAATGATTTG 60.450 44.000 10.84 10.84 40.32 2.32
3320 4015 4.643784 GCTCCTCAGATGTCCAAATGATTT 59.356 41.667 0.00 0.00 0.00 2.17
3321 4016 4.079901 AGCTCCTCAGATGTCCAAATGATT 60.080 41.667 0.00 0.00 0.00 2.57
3322 4017 3.458857 AGCTCCTCAGATGTCCAAATGAT 59.541 43.478 0.00 0.00 0.00 2.45
3323 4018 2.842496 AGCTCCTCAGATGTCCAAATGA 59.158 45.455 0.00 0.00 0.00 2.57
3324 4019 3.118334 AGAGCTCCTCAGATGTCCAAATG 60.118 47.826 10.93 0.00 32.06 2.32
3325 4020 3.113824 AGAGCTCCTCAGATGTCCAAAT 58.886 45.455 10.93 0.00 32.06 2.32
3326 4021 2.499289 GAGAGCTCCTCAGATGTCCAAA 59.501 50.000 10.93 0.00 41.58 3.28
3327 4022 2.106566 GAGAGCTCCTCAGATGTCCAA 58.893 52.381 10.93 0.00 41.58 3.53
3328 4023 1.006400 TGAGAGCTCCTCAGATGTCCA 59.994 52.381 10.93 0.00 46.38 4.02
3329 4024 1.774110 TGAGAGCTCCTCAGATGTCC 58.226 55.000 10.93 0.00 46.38 4.02
3355 4050 7.350382 ACATTTTTACAGACCCCCAAATTTTT 58.650 30.769 0.00 0.00 0.00 1.94
3356 4051 6.905736 ACATTTTTACAGACCCCCAAATTTT 58.094 32.000 0.00 0.00 0.00 1.82
3357 4052 6.508030 ACATTTTTACAGACCCCCAAATTT 57.492 33.333 0.00 0.00 0.00 1.82
3358 4053 6.508030 AACATTTTTACAGACCCCCAAATT 57.492 33.333 0.00 0.00 0.00 1.82
3359 4054 6.508030 AAACATTTTTACAGACCCCCAAAT 57.492 33.333 0.00 0.00 0.00 2.32
3360 4055 5.959583 AAACATTTTTACAGACCCCCAAA 57.040 34.783 0.00 0.00 0.00 3.28
3361 4056 6.041069 CAGTAAACATTTTTACAGACCCCCAA 59.959 38.462 15.08 0.00 46.66 4.12
3362 4057 5.536916 CAGTAAACATTTTTACAGACCCCCA 59.463 40.000 15.08 0.00 46.66 4.96
3363 4058 5.537295 ACAGTAAACATTTTTACAGACCCCC 59.463 40.000 15.08 0.00 46.66 5.40
3364 4059 6.644248 ACAGTAAACATTTTTACAGACCCC 57.356 37.500 15.08 0.00 46.66 4.95
3365 4060 7.708998 TGAACAGTAAACATTTTTACAGACCC 58.291 34.615 15.08 4.91 46.66 4.46
3366 4061 9.180678 CATGAACAGTAAACATTTTTACAGACC 57.819 33.333 15.08 6.74 46.66 3.85
3367 4062 9.730420 ACATGAACAGTAAACATTTTTACAGAC 57.270 29.630 15.08 8.61 46.66 3.51
3376 4071 9.515020 CAAAACAGTACATGAACAGTAAACATT 57.485 29.630 0.00 0.00 0.00 2.71
3377 4072 8.134895 CCAAAACAGTACATGAACAGTAAACAT 58.865 33.333 0.00 0.00 0.00 2.71
3378 4073 7.121463 ACCAAAACAGTACATGAACAGTAAACA 59.879 33.333 0.00 0.00 0.00 2.83
3379 4074 7.477494 ACCAAAACAGTACATGAACAGTAAAC 58.523 34.615 0.00 0.00 0.00 2.01
3380 4075 7.554835 AGACCAAAACAGTACATGAACAGTAAA 59.445 33.333 0.00 0.00 0.00 2.01
3381 4076 7.051623 AGACCAAAACAGTACATGAACAGTAA 58.948 34.615 0.00 0.00 0.00 2.24
3382 4077 6.588204 AGACCAAAACAGTACATGAACAGTA 58.412 36.000 0.00 0.00 0.00 2.74
3383 4078 5.437060 AGACCAAAACAGTACATGAACAGT 58.563 37.500 0.00 0.00 0.00 3.55
3384 4079 7.490962 TTAGACCAAAACAGTACATGAACAG 57.509 36.000 0.00 0.00 0.00 3.16
3385 4080 8.458573 AATTAGACCAAAACAGTACATGAACA 57.541 30.769 0.00 0.00 0.00 3.18
3386 4081 9.180678 CAAATTAGACCAAAACAGTACATGAAC 57.819 33.333 0.00 0.00 0.00 3.18
3387 4082 8.908903 ACAAATTAGACCAAAACAGTACATGAA 58.091 29.630 0.00 0.00 0.00 2.57
3388 4083 8.458573 ACAAATTAGACCAAAACAGTACATGA 57.541 30.769 0.00 0.00 0.00 3.07
3389 4084 8.567948 AGACAAATTAGACCAAAACAGTACATG 58.432 33.333 0.00 0.00 0.00 3.21
3390 4085 8.691661 AGACAAATTAGACCAAAACAGTACAT 57.308 30.769 0.00 0.00 0.00 2.29
3391 4086 8.514330 AAGACAAATTAGACCAAAACAGTACA 57.486 30.769 0.00 0.00 0.00 2.90
3392 4087 9.797556 AAAAGACAAATTAGACCAAAACAGTAC 57.202 29.630 0.00 0.00 0.00 2.73
3416 4111 1.971481 TGAGCAGCTCTCAGCAAAAA 58.029 45.000 23.15 0.00 46.34 1.94
3417 4112 3.711937 TGAGCAGCTCTCAGCAAAA 57.288 47.368 23.15 0.00 46.34 2.44
3424 4119 0.822811 TGGACATCTGAGCAGCTCTC 59.177 55.000 23.15 11.57 42.23 3.20
3425 4120 1.273759 TTGGACATCTGAGCAGCTCT 58.726 50.000 23.15 2.04 0.00 4.09
3426 4121 2.105006 TTTGGACATCTGAGCAGCTC 57.895 50.000 16.21 16.21 0.00 4.09
3427 4122 2.026542 TCATTTGGACATCTGAGCAGCT 60.027 45.455 0.00 0.00 0.00 4.24
3428 4123 2.097142 GTCATTTGGACATCTGAGCAGC 59.903 50.000 0.00 0.00 46.19 5.25
3440 4135 6.148948 CGCTACAAATTTCAAGTCATTTGGA 58.851 36.000 8.94 0.47 42.40 3.53
3441 4136 5.345741 CCGCTACAAATTTCAAGTCATTTGG 59.654 40.000 8.94 0.00 42.40 3.28
3442 4137 6.088085 GTCCGCTACAAATTTCAAGTCATTTG 59.912 38.462 3.60 3.60 43.31 2.32
3443 4138 6.149633 GTCCGCTACAAATTTCAAGTCATTT 58.850 36.000 0.00 0.00 0.00 2.32
3444 4139 5.335661 GGTCCGCTACAAATTTCAAGTCATT 60.336 40.000 0.00 0.00 0.00 2.57
3445 4140 4.156008 GGTCCGCTACAAATTTCAAGTCAT 59.844 41.667 0.00 0.00 0.00 3.06
3446 4141 3.500680 GGTCCGCTACAAATTTCAAGTCA 59.499 43.478 0.00 0.00 0.00 3.41
3447 4142 3.751698 AGGTCCGCTACAAATTTCAAGTC 59.248 43.478 0.00 0.00 0.00 3.01
3448 4143 3.751518 AGGTCCGCTACAAATTTCAAGT 58.248 40.909 0.00 0.00 0.00 3.16
3449 4144 3.751175 TGAGGTCCGCTACAAATTTCAAG 59.249 43.478 0.00 0.00 0.00 3.02
3450 4145 3.500680 GTGAGGTCCGCTACAAATTTCAA 59.499 43.478 0.00 0.00 0.00 2.69
3451 4146 3.071479 GTGAGGTCCGCTACAAATTTCA 58.929 45.455 0.00 0.00 0.00 2.69
3452 4147 3.071479 TGTGAGGTCCGCTACAAATTTC 58.929 45.455 0.00 0.00 0.00 2.17
3453 4148 2.812011 GTGTGAGGTCCGCTACAAATTT 59.188 45.455 0.00 0.00 0.00 1.82
3454 4149 2.224426 TGTGTGAGGTCCGCTACAAATT 60.224 45.455 0.00 0.00 0.00 1.82
3455 4150 1.346395 TGTGTGAGGTCCGCTACAAAT 59.654 47.619 0.00 0.00 0.00 2.32
3456 4151 0.753867 TGTGTGAGGTCCGCTACAAA 59.246 50.000 0.00 0.00 0.00 2.83
3457 4152 0.973632 ATGTGTGAGGTCCGCTACAA 59.026 50.000 7.19 0.00 0.00 2.41
3458 4153 0.530744 GATGTGTGAGGTCCGCTACA 59.469 55.000 5.93 5.93 0.00 2.74
3459 4154 0.530744 TGATGTGTGAGGTCCGCTAC 59.469 55.000 0.00 0.00 0.00 3.58
3460 4155 1.262417 TTGATGTGTGAGGTCCGCTA 58.738 50.000 0.00 0.00 0.00 4.26
3461 4156 0.396435 TTTGATGTGTGAGGTCCGCT 59.604 50.000 0.00 0.00 0.00 5.52
3462 4157 1.453155 ATTTGATGTGTGAGGTCCGC 58.547 50.000 0.00 0.00 0.00 5.54
3463 4158 2.813754 ACAATTTGATGTGTGAGGTCCG 59.186 45.455 2.79 0.00 30.82 4.79
3464 4159 4.074970 AGACAATTTGATGTGTGAGGTCC 58.925 43.478 2.79 0.00 32.57 4.46
3465 4160 5.122396 GGTAGACAATTTGATGTGTGAGGTC 59.878 44.000 2.79 0.00 32.57 3.85
3466 4161 5.003804 GGTAGACAATTTGATGTGTGAGGT 58.996 41.667 2.79 0.00 32.57 3.85
3467 4162 5.003160 TGGTAGACAATTTGATGTGTGAGG 58.997 41.667 2.79 0.00 32.57 3.86
3468 4163 5.469760 TGTGGTAGACAATTTGATGTGTGAG 59.530 40.000 2.79 0.00 32.57 3.51
3469 4164 5.238432 GTGTGGTAGACAATTTGATGTGTGA 59.762 40.000 2.79 0.00 35.91 3.58
3470 4165 5.008514 TGTGTGGTAGACAATTTGATGTGTG 59.991 40.000 2.79 0.00 35.91 3.82
3471 4166 5.129634 TGTGTGGTAGACAATTTGATGTGT 58.870 37.500 2.79 0.00 35.91 3.72
3472 4167 5.687770 TGTGTGGTAGACAATTTGATGTG 57.312 39.130 2.79 0.00 35.91 3.21
3473 4168 6.707440 TTTGTGTGGTAGACAATTTGATGT 57.293 33.333 2.79 0.00 35.91 3.06
3474 4169 8.592105 AAATTTGTGTGGTAGACAATTTGATG 57.408 30.769 2.79 0.00 35.91 3.07
3480 4175 9.487790 CCAAATAAAATTTGTGTGGTAGACAAT 57.512 29.630 3.77 0.00 35.91 2.71
3481 4176 8.879342 CCAAATAAAATTTGTGTGGTAGACAA 57.121 30.769 3.77 0.00 35.91 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.