Multiple sequence alignment - TraesCS5D01G481000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G481000 chr5D 100.000 2943 0 0 1 2943 519178669 519181611 0.000000e+00 5435.0
1 TraesCS5D01G481000 chr5D 78.233 464 68 25 51 495 329793836 329794285 1.740000e-67 267.0
2 TraesCS5D01G481000 chr5D 87.850 107 12 1 357 463 411634772 411634877 1.110000e-24 124.0
3 TraesCS5D01G481000 chr5D 94.545 55 3 0 1 55 329791097 329791151 5.230000e-13 86.1
4 TraesCS5D01G481000 chr5D 90.000 60 3 2 1 57 309890041 309890100 1.130000e-09 75.0
5 TraesCS5D01G481000 chr5A 89.512 1659 86 27 525 2167 645493417 645495003 0.000000e+00 2019.0
6 TraesCS5D01G481000 chr5A 90.313 351 20 7 2176 2520 645495316 645495658 5.790000e-122 448.0
7 TraesCS5D01G481000 chr5A 88.889 216 20 3 2724 2938 645496464 645496676 2.250000e-66 263.0
8 TraesCS5D01G481000 chr5A 88.496 226 10 8 2517 2731 645495921 645496141 2.910000e-65 259.0
9 TraesCS5D01G481000 chr5B 87.412 1708 113 50 527 2166 652821521 652823194 0.000000e+00 1869.0
10 TraesCS5D01G481000 chr5B 94.118 272 13 3 2413 2682 652825219 652825489 7.590000e-111 411.0
11 TraesCS5D01G481000 chr5B 91.234 308 12 7 2129 2427 652824773 652825074 3.530000e-109 405.0
12 TraesCS5D01G481000 chr5B 93.571 140 6 3 2725 2862 652826937 652827075 3.840000e-49 206.0
13 TraesCS5D01G481000 chr7D 77.899 457 72 22 51 493 491793357 491792916 1.050000e-64 257.0
14 TraesCS5D01G481000 chr7D 77.003 287 41 16 51 320 30126811 30127089 1.100000e-29 141.0
15 TraesCS5D01G481000 chr7D 82.014 139 22 3 355 493 315136011 315136146 6.670000e-22 115.0
16 TraesCS5D01G481000 chr7D 80.328 122 18 5 2800 2919 236001351 236001234 1.450000e-13 87.9
17 TraesCS5D01G481000 chr7A 76.667 450 57 21 78 495 247061715 247062148 3.840000e-49 206.0
18 TraesCS5D01G481000 chr3D 74.844 481 74 29 51 505 291755708 291756167 1.080000e-39 174.0
19 TraesCS5D01G481000 chr3D 73.731 335 65 15 160 485 5492281 5491961 3.100000e-20 110.0
20 TraesCS5D01G481000 chr7B 79.638 221 32 8 51 258 60692575 60692795 2.360000e-31 147.0
21 TraesCS5D01G481000 chr7B 82.407 108 17 2 51 157 521126021 521125915 3.120000e-15 93.5
22 TraesCS5D01G481000 chr7B 100.000 46 0 0 6 51 205641381 205641426 5.230000e-13 86.1
23 TraesCS5D01G481000 chr2B 75.000 320 55 13 182 498 693444239 693443942 1.110000e-24 124.0
24 TraesCS5D01G481000 chr2B 77.519 129 24 4 368 495 604939218 604939342 4.070000e-09 73.1
25 TraesCS5D01G481000 chr6B 78.495 186 33 7 323 505 435304204 435304385 6.670000e-22 115.0
26 TraesCS5D01G481000 chr3B 86.408 103 12 2 51 152 68662825 68662724 8.620000e-21 111.0
27 TraesCS5D01G481000 chr1B 74.062 320 51 22 53 353 308578906 308578600 5.190000e-18 102.0
28 TraesCS5D01G481000 chr4B 84.536 97 11 4 400 495 16021474 16021567 3.120000e-15 93.5
29 TraesCS5D01G481000 chr4B 86.420 81 9 2 415 495 15963068 15963146 1.450000e-13 87.9
30 TraesCS5D01G481000 chr4B 98.000 50 1 0 2 51 258691220 258691269 1.450000e-13 87.9
31 TraesCS5D01G481000 chr2D 98.039 51 1 0 1 51 640424980 640425030 4.040000e-14 89.8
32 TraesCS5D01G481000 chr1D 76.289 194 29 11 89 267 215618715 215618524 1.450000e-13 87.9
33 TraesCS5D01G481000 chr1D 97.872 47 1 0 1 47 43119108 43119062 6.760000e-12 82.4
34 TraesCS5D01G481000 chr4D 100.000 46 0 0 1 46 206124214 206124169 5.230000e-13 86.1
35 TraesCS5D01G481000 chr4D 94.118 51 3 0 1 51 304743540 304743590 8.750000e-11 78.7
36 TraesCS5D01G481000 chr4A 96.078 51 2 0 1 51 540063824 540063874 1.880000e-12 84.2
37 TraesCS5D01G481000 chr6D 76.429 140 23 9 355 494 367532794 367532923 1.890000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G481000 chr5D 519178669 519181611 2942 False 5435.00 5435 100.00000 1 2943 1 chr5D.!!$F3 2942
1 TraesCS5D01G481000 chr5A 645493417 645496676 3259 False 747.25 2019 89.30250 525 2938 4 chr5A.!!$F1 2413
2 TraesCS5D01G481000 chr5B 652821521 652827075 5554 False 722.75 1869 91.58375 527 2862 4 chr5B.!!$F1 2335

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
462 463 0.033894 TTTTAGGCCGGGAATGGGTC 60.034 55.0 2.18 0.0 0.0 4.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2381 4410 0.73288 GACATGACCGACCACGTCTG 60.733 60.0 0.0 0.0 37.88 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.449464 TCATCATGCCTTCCAAAGTGG 58.551 47.619 0.00 0.00 39.43 4.00
21 22 1.134907 CATCATGCCTTCCAAAGTGGC 60.135 52.381 0.00 0.00 46.26 5.01
25 26 1.079612 GCCTTCCAAAGTGGCATGC 60.080 57.895 9.90 9.90 45.46 4.06
26 27 1.818959 GCCTTCCAAAGTGGCATGCA 61.819 55.000 21.36 2.54 45.46 3.96
27 28 0.680618 CCTTCCAAAGTGGCATGCAA 59.319 50.000 21.36 4.92 37.47 4.08
28 29 1.337447 CCTTCCAAAGTGGCATGCAAG 60.337 52.381 21.36 11.30 37.47 4.01
29 30 0.680618 TTCCAAAGTGGCATGCAAGG 59.319 50.000 21.36 5.83 37.47 3.61
38 39 4.676444 CATGCAAGGCAATCGACG 57.324 55.556 0.00 0.00 43.62 5.12
39 40 1.584483 CATGCAAGGCAATCGACGC 60.584 57.895 0.00 0.00 43.62 5.19
45 46 4.299316 GGCAATCGACGCCGCATC 62.299 66.667 11.64 0.00 40.35 3.91
46 47 4.633596 GCAATCGACGCCGCATCG 62.634 66.667 1.65 1.65 41.00 3.84
47 48 3.254654 CAATCGACGCCGCATCGT 61.255 61.111 8.88 0.00 46.38 3.73
48 49 3.254654 AATCGACGCCGCATCGTG 61.255 61.111 8.88 0.00 43.42 4.35
55 56 4.521062 GCCGCATCGTGCTCCTCT 62.521 66.667 8.07 0.00 42.25 3.69
56 57 2.185350 CCGCATCGTGCTCCTCTT 59.815 61.111 8.07 0.00 42.25 2.85
57 58 2.169789 CCGCATCGTGCTCCTCTTG 61.170 63.158 8.07 0.00 42.25 3.02
58 59 2.806856 CGCATCGTGCTCCTCTTGC 61.807 63.158 8.07 0.00 42.25 4.01
59 60 1.449246 GCATCGTGCTCCTCTTGCT 60.449 57.895 3.20 0.00 40.96 3.91
60 61 1.703438 GCATCGTGCTCCTCTTGCTG 61.703 60.000 3.20 0.00 40.96 4.41
61 62 0.390866 CATCGTGCTCCTCTTGCTGT 60.391 55.000 0.00 0.00 0.00 4.40
62 63 0.390866 ATCGTGCTCCTCTTGCTGTG 60.391 55.000 0.00 0.00 0.00 3.66
63 64 2.675056 CGTGCTCCTCTTGCTGTGC 61.675 63.158 0.00 0.00 0.00 4.57
64 65 2.357881 TGCTCCTCTTGCTGTGCG 60.358 61.111 0.00 0.00 0.00 5.34
65 66 3.123620 GCTCCTCTTGCTGTGCGG 61.124 66.667 0.00 0.00 0.00 5.69
66 67 2.345244 CTCCTCTTGCTGTGCGGT 59.655 61.111 0.00 0.00 0.00 5.68
67 68 2.031012 TCCTCTTGCTGTGCGGTG 59.969 61.111 0.00 0.00 0.00 4.94
68 69 3.052082 CCTCTTGCTGTGCGGTGG 61.052 66.667 0.00 0.00 0.00 4.61
69 70 3.730761 CTCTTGCTGTGCGGTGGC 61.731 66.667 0.00 0.00 40.52 5.01
102 103 3.112709 GAACGCGGCTTCGAGCTT 61.113 61.111 12.47 0.00 41.99 3.74
103 104 3.354499 GAACGCGGCTTCGAGCTTG 62.354 63.158 12.47 0.00 41.99 4.01
107 108 3.414700 CGGCTTCGAGCTTGCGTT 61.415 61.111 0.00 0.00 41.99 4.84
108 109 2.476499 GGCTTCGAGCTTGCGTTC 59.524 61.111 0.00 0.00 41.99 3.95
109 110 2.476499 GCTTCGAGCTTGCGTTCC 59.524 61.111 0.00 0.00 38.45 3.62
110 111 2.029844 GCTTCGAGCTTGCGTTCCT 61.030 57.895 0.00 0.00 38.45 3.36
111 112 1.784062 CTTCGAGCTTGCGTTCCTG 59.216 57.895 0.00 0.00 0.00 3.86
112 113 2.233007 CTTCGAGCTTGCGTTCCTGC 62.233 60.000 0.00 0.00 0.00 4.85
113 114 4.139420 CGAGCTTGCGTTCCTGCG 62.139 66.667 0.00 0.00 37.81 5.18
135 136 2.689034 CCTCCGGCCCTTCCTCTT 60.689 66.667 0.00 0.00 0.00 2.85
136 137 2.586792 CTCCGGCCCTTCCTCTTG 59.413 66.667 0.00 0.00 0.00 3.02
137 138 3.009115 TCCGGCCCTTCCTCTTGG 61.009 66.667 0.00 0.00 0.00 3.61
138 139 4.803908 CCGGCCCTTCCTCTTGGC 62.804 72.222 0.00 0.00 44.59 4.52
141 142 3.717294 GCCCTTCCTCTTGGCCGA 61.717 66.667 0.00 0.00 39.30 5.54
142 143 2.269241 CCCTTCCTCTTGGCCGAC 59.731 66.667 0.00 0.00 0.00 4.79
143 144 2.592993 CCCTTCCTCTTGGCCGACA 61.593 63.158 0.00 0.00 0.00 4.35
144 145 1.078848 CCTTCCTCTTGGCCGACAG 60.079 63.158 0.00 0.00 0.00 3.51
145 146 1.743252 CTTCCTCTTGGCCGACAGC 60.743 63.158 0.00 0.00 42.60 4.40
146 147 2.454832 CTTCCTCTTGGCCGACAGCA 62.455 60.000 0.00 0.00 46.50 4.41
147 148 2.731691 TTCCTCTTGGCCGACAGCAC 62.732 60.000 0.00 0.00 46.50 4.40
148 149 3.114616 CTCTTGGCCGACAGCACG 61.115 66.667 0.00 0.00 46.50 5.34
167 168 2.266055 CCCGCTCGGCTTCTTCTT 59.734 61.111 2.18 0.00 0.00 2.52
168 169 2.103042 CCCGCTCGGCTTCTTCTTG 61.103 63.158 2.18 0.00 0.00 3.02
169 170 2.103042 CCGCTCGGCTTCTTCTTGG 61.103 63.158 0.00 0.00 0.00 3.61
170 171 1.374758 CGCTCGGCTTCTTCTTGGT 60.375 57.895 0.00 0.00 0.00 3.67
171 172 1.355066 CGCTCGGCTTCTTCTTGGTC 61.355 60.000 0.00 0.00 0.00 4.02
172 173 1.355066 GCTCGGCTTCTTCTTGGTCG 61.355 60.000 0.00 0.00 0.00 4.79
173 174 0.737715 CTCGGCTTCTTCTTGGTCGG 60.738 60.000 0.00 0.00 0.00 4.79
174 175 2.391389 CGGCTTCTTCTTGGTCGGC 61.391 63.158 0.00 0.00 0.00 5.54
175 176 2.391389 GGCTTCTTCTTGGTCGGCG 61.391 63.158 0.00 0.00 0.00 6.46
176 177 1.668151 GCTTCTTCTTGGTCGGCGT 60.668 57.895 6.85 0.00 0.00 5.68
177 178 1.627550 GCTTCTTCTTGGTCGGCGTC 61.628 60.000 6.85 0.00 0.00 5.19
178 179 1.344942 CTTCTTCTTGGTCGGCGTCG 61.345 60.000 1.15 1.15 37.82 5.12
179 180 3.479269 CTTCTTGGTCGGCGTCGC 61.479 66.667 9.22 9.22 36.13 5.19
250 251 4.492604 CGGAGGAGGCTAGAGAGG 57.507 66.667 0.00 0.00 0.00 3.69
293 294 3.179265 CGACACGTCGTCCATGGC 61.179 66.667 6.96 0.96 46.99 4.40
294 295 2.048597 GACACGTCGTCCATGGCA 60.049 61.111 6.96 0.00 38.85 4.92
295 296 1.666553 GACACGTCGTCCATGGCAA 60.667 57.895 6.96 0.00 38.85 4.52
296 297 1.626654 GACACGTCGTCCATGGCAAG 61.627 60.000 6.96 0.27 38.85 4.01
297 298 2.742372 ACGTCGTCCATGGCAAGC 60.742 61.111 6.96 0.00 0.00 4.01
298 299 2.741985 CGTCGTCCATGGCAAGCA 60.742 61.111 6.96 0.00 0.00 3.91
299 300 2.743752 CGTCGTCCATGGCAAGCAG 61.744 63.158 6.96 0.00 0.00 4.24
300 301 2.747460 TCGTCCATGGCAAGCAGC 60.747 61.111 6.96 0.00 44.65 5.25
325 326 2.668550 GCGAGCGGGTGGAGTTTT 60.669 61.111 0.00 0.00 0.00 2.43
326 327 2.966309 GCGAGCGGGTGGAGTTTTG 61.966 63.158 0.00 0.00 0.00 2.44
327 328 1.597027 CGAGCGGGTGGAGTTTTGT 60.597 57.895 0.00 0.00 0.00 2.83
328 329 1.841663 CGAGCGGGTGGAGTTTTGTG 61.842 60.000 0.00 0.00 0.00 3.33
329 330 1.515521 GAGCGGGTGGAGTTTTGTGG 61.516 60.000 0.00 0.00 0.00 4.17
330 331 2.561037 GCGGGTGGAGTTTTGTGGG 61.561 63.158 0.00 0.00 0.00 4.61
331 332 1.149627 CGGGTGGAGTTTTGTGGGA 59.850 57.895 0.00 0.00 0.00 4.37
332 333 0.466555 CGGGTGGAGTTTTGTGGGAA 60.467 55.000 0.00 0.00 0.00 3.97
333 334 1.783071 GGGTGGAGTTTTGTGGGAAA 58.217 50.000 0.00 0.00 0.00 3.13
334 335 1.686587 GGGTGGAGTTTTGTGGGAAAG 59.313 52.381 0.00 0.00 0.00 2.62
335 336 2.661718 GGTGGAGTTTTGTGGGAAAGA 58.338 47.619 0.00 0.00 0.00 2.52
336 337 2.623416 GGTGGAGTTTTGTGGGAAAGAG 59.377 50.000 0.00 0.00 0.00 2.85
337 338 3.551846 GTGGAGTTTTGTGGGAAAGAGA 58.448 45.455 0.00 0.00 0.00 3.10
338 339 3.565902 GTGGAGTTTTGTGGGAAAGAGAG 59.434 47.826 0.00 0.00 0.00 3.20
339 340 3.149981 GGAGTTTTGTGGGAAAGAGAGG 58.850 50.000 0.00 0.00 0.00 3.69
340 341 3.181443 GGAGTTTTGTGGGAAAGAGAGGA 60.181 47.826 0.00 0.00 0.00 3.71
341 342 4.461198 GAGTTTTGTGGGAAAGAGAGGAA 58.539 43.478 0.00 0.00 0.00 3.36
342 343 4.867086 AGTTTTGTGGGAAAGAGAGGAAA 58.133 39.130 0.00 0.00 0.00 3.13
343 344 5.269189 AGTTTTGTGGGAAAGAGAGGAAAA 58.731 37.500 0.00 0.00 0.00 2.29
344 345 5.899547 AGTTTTGTGGGAAAGAGAGGAAAAT 59.100 36.000 0.00 0.00 0.00 1.82
345 346 5.789643 TTTGTGGGAAAGAGAGGAAAATG 57.210 39.130 0.00 0.00 0.00 2.32
346 347 4.722526 TGTGGGAAAGAGAGGAAAATGA 57.277 40.909 0.00 0.00 0.00 2.57
347 348 4.655963 TGTGGGAAAGAGAGGAAAATGAG 58.344 43.478 0.00 0.00 0.00 2.90
348 349 4.104738 TGTGGGAAAGAGAGGAAAATGAGT 59.895 41.667 0.00 0.00 0.00 3.41
349 350 4.457257 GTGGGAAAGAGAGGAAAATGAGTG 59.543 45.833 0.00 0.00 0.00 3.51
350 351 4.104738 TGGGAAAGAGAGGAAAATGAGTGT 59.895 41.667 0.00 0.00 0.00 3.55
351 352 4.457257 GGGAAAGAGAGGAAAATGAGTGTG 59.543 45.833 0.00 0.00 0.00 3.82
352 353 4.457257 GGAAAGAGAGGAAAATGAGTGTGG 59.543 45.833 0.00 0.00 0.00 4.17
353 354 4.713792 AAGAGAGGAAAATGAGTGTGGT 57.286 40.909 0.00 0.00 0.00 4.16
354 355 4.713792 AGAGAGGAAAATGAGTGTGGTT 57.286 40.909 0.00 0.00 0.00 3.67
355 356 4.392940 AGAGAGGAAAATGAGTGTGGTTG 58.607 43.478 0.00 0.00 0.00 3.77
356 357 4.137543 GAGAGGAAAATGAGTGTGGTTGT 58.862 43.478 0.00 0.00 0.00 3.32
357 358 3.885297 AGAGGAAAATGAGTGTGGTTGTG 59.115 43.478 0.00 0.00 0.00 3.33
358 359 2.362077 AGGAAAATGAGTGTGGTTGTGC 59.638 45.455 0.00 0.00 0.00 4.57
359 360 2.545742 GGAAAATGAGTGTGGTTGTGCC 60.546 50.000 0.00 0.00 37.90 5.01
360 361 0.667993 AAATGAGTGTGGTTGTGCCG 59.332 50.000 0.00 0.00 41.21 5.69
362 363 3.660111 GAGTGTGGTTGTGCCGCC 61.660 66.667 0.00 0.00 46.96 6.13
386 387 4.787280 CGAGCCAGGGGGAGGAGT 62.787 72.222 0.00 0.00 35.59 3.85
387 388 2.696893 GAGCCAGGGGGAGGAGTA 59.303 66.667 0.00 0.00 35.59 2.59
388 389 1.458588 GAGCCAGGGGGAGGAGTAG 60.459 68.421 0.00 0.00 35.59 2.57
389 390 2.446802 GCCAGGGGGAGGAGTAGG 60.447 72.222 0.00 0.00 35.59 3.18
390 391 2.446802 CCAGGGGGAGGAGTAGGC 60.447 72.222 0.00 0.00 35.59 3.93
391 392 2.840102 CAGGGGGAGGAGTAGGCG 60.840 72.222 0.00 0.00 0.00 5.52
392 393 4.159108 AGGGGGAGGAGTAGGCGG 62.159 72.222 0.00 0.00 0.00 6.13
397 398 3.459063 GAGGAGTAGGCGGGCGTT 61.459 66.667 0.00 0.00 0.00 4.84
398 399 3.718210 GAGGAGTAGGCGGGCGTTG 62.718 68.421 0.00 0.00 0.00 4.10
411 412 4.734920 CGTTGCGCGCGTCCATTT 62.735 61.111 32.35 0.00 0.00 2.32
412 413 2.869702 GTTGCGCGCGTCCATTTC 60.870 61.111 32.35 13.22 0.00 2.17
413 414 3.047280 TTGCGCGCGTCCATTTCT 61.047 55.556 32.35 0.00 0.00 2.52
414 415 2.612567 TTGCGCGCGTCCATTTCTT 61.613 52.632 32.35 0.00 0.00 2.52
415 416 2.574212 GCGCGCGTCCATTTCTTG 60.574 61.111 32.35 0.00 0.00 3.02
416 417 2.860293 CGCGCGTCCATTTCTTGT 59.140 55.556 24.19 0.00 0.00 3.16
417 418 1.225745 CGCGCGTCCATTTCTTGTC 60.226 57.895 24.19 0.00 0.00 3.18
418 419 1.134694 GCGCGTCCATTTCTTGTCC 59.865 57.895 8.43 0.00 0.00 4.02
419 420 1.419922 CGCGTCCATTTCTTGTCCG 59.580 57.895 0.00 0.00 0.00 4.79
420 421 1.289109 CGCGTCCATTTCTTGTCCGT 61.289 55.000 0.00 0.00 0.00 4.69
421 422 0.165944 GCGTCCATTTCTTGTCCGTG 59.834 55.000 0.00 0.00 0.00 4.94
422 423 0.165944 CGTCCATTTCTTGTCCGTGC 59.834 55.000 0.00 0.00 0.00 5.34
423 424 1.523758 GTCCATTTCTTGTCCGTGCT 58.476 50.000 0.00 0.00 0.00 4.40
424 425 1.197721 GTCCATTTCTTGTCCGTGCTG 59.802 52.381 0.00 0.00 0.00 4.41
425 426 1.071542 TCCATTTCTTGTCCGTGCTGA 59.928 47.619 0.00 0.00 0.00 4.26
426 427 1.197721 CCATTTCTTGTCCGTGCTGAC 59.802 52.381 0.00 0.00 35.77 3.51
427 428 1.872952 CATTTCTTGTCCGTGCTGACA 59.127 47.619 1.00 1.00 43.26 3.58
428 429 1.295792 TTTCTTGTCCGTGCTGACAC 58.704 50.000 4.18 0.00 44.55 3.67
437 438 3.780925 GTGCTGACACAAATGAGGC 57.219 52.632 0.00 0.00 46.61 4.70
438 439 1.242076 GTGCTGACACAAATGAGGCT 58.758 50.000 0.00 0.00 46.61 4.58
439 440 1.198637 GTGCTGACACAAATGAGGCTC 59.801 52.381 7.79 7.79 46.61 4.70
440 441 1.202794 TGCTGACACAAATGAGGCTCA 60.203 47.619 21.19 21.19 0.00 4.26
441 442 1.881973 GCTGACACAAATGAGGCTCAA 59.118 47.619 22.84 5.13 0.00 3.02
442 443 2.294233 GCTGACACAAATGAGGCTCAAA 59.706 45.455 22.84 0.00 0.00 2.69
443 444 3.057033 GCTGACACAAATGAGGCTCAAAT 60.057 43.478 22.84 10.89 0.00 2.32
444 445 4.560108 GCTGACACAAATGAGGCTCAAATT 60.560 41.667 22.84 16.39 0.00 1.82
445 446 5.534207 TGACACAAATGAGGCTCAAATTT 57.466 34.783 22.84 15.38 0.00 1.82
446 447 5.916318 TGACACAAATGAGGCTCAAATTTT 58.084 33.333 22.84 14.63 0.00 1.82
447 448 7.048629 TGACACAAATGAGGCTCAAATTTTA 57.951 32.000 22.84 0.00 0.00 1.52
448 449 7.147312 TGACACAAATGAGGCTCAAATTTTAG 58.853 34.615 22.84 14.56 0.00 1.85
449 450 6.458210 ACACAAATGAGGCTCAAATTTTAGG 58.542 36.000 22.84 13.97 0.00 2.69
450 451 5.349543 CACAAATGAGGCTCAAATTTTAGGC 59.650 40.000 22.84 16.04 38.50 3.93
451 452 4.743057 AATGAGGCTCAAATTTTAGGCC 57.257 40.909 22.84 16.65 42.74 5.19
452 453 2.091541 TGAGGCTCAAATTTTAGGCCG 58.908 47.619 16.28 0.00 46.44 6.13
453 454 1.405463 GAGGCTCAAATTTTAGGCCGG 59.595 52.381 19.15 0.00 46.44 6.13
454 455 0.459899 GGCTCAAATTTTAGGCCGGG 59.540 55.000 13.51 0.00 33.30 5.73
455 456 1.470051 GCTCAAATTTTAGGCCGGGA 58.530 50.000 2.18 0.00 0.00 5.14
456 457 1.822371 GCTCAAATTTTAGGCCGGGAA 59.178 47.619 2.18 0.00 0.00 3.97
457 458 2.430694 GCTCAAATTTTAGGCCGGGAAT 59.569 45.455 2.18 0.00 0.00 3.01
458 459 3.737972 GCTCAAATTTTAGGCCGGGAATG 60.738 47.826 2.18 0.00 0.00 2.67
459 460 2.763448 TCAAATTTTAGGCCGGGAATGG 59.237 45.455 2.18 0.00 0.00 3.16
460 461 1.788229 AATTTTAGGCCGGGAATGGG 58.212 50.000 2.18 0.00 0.00 4.00
461 462 0.634465 ATTTTAGGCCGGGAATGGGT 59.366 50.000 2.18 0.00 0.00 4.51
462 463 0.033894 TTTTAGGCCGGGAATGGGTC 60.034 55.000 2.18 0.00 0.00 4.46
463 464 0.917333 TTTAGGCCGGGAATGGGTCT 60.917 55.000 2.18 0.00 43.28 3.85
464 465 1.342672 TTAGGCCGGGAATGGGTCTC 61.343 60.000 2.18 0.00 39.18 3.36
465 466 4.191015 GGCCGGGAATGGGTCTCC 62.191 72.222 2.18 0.00 0.00 3.71
475 476 3.319198 GGGTCTCCCAGCGGACAA 61.319 66.667 0.00 0.00 44.65 3.18
476 477 2.747686 GGTCTCCCAGCGGACAAA 59.252 61.111 0.00 0.00 33.32 2.83
477 478 1.072505 GGTCTCCCAGCGGACAAAA 59.927 57.895 0.00 0.00 33.32 2.44
478 479 0.536460 GGTCTCCCAGCGGACAAAAA 60.536 55.000 0.00 0.00 33.32 1.94
479 480 0.875059 GTCTCCCAGCGGACAAAAAG 59.125 55.000 0.00 0.00 33.32 2.27
480 481 0.889186 TCTCCCAGCGGACAAAAAGC 60.889 55.000 0.00 0.00 33.32 3.51
481 482 2.187599 CTCCCAGCGGACAAAAAGCG 62.188 60.000 0.00 0.00 33.32 4.68
482 483 2.255252 CCAGCGGACAAAAAGCGG 59.745 61.111 0.00 0.00 35.78 5.52
483 484 2.258013 CCAGCGGACAAAAAGCGGA 61.258 57.895 0.00 0.00 35.78 5.54
484 485 1.082104 CAGCGGACAAAAAGCGGAC 60.082 57.895 0.00 0.00 35.78 4.79
485 486 2.127383 GCGGACAAAAAGCGGACG 60.127 61.111 0.00 0.00 0.00 4.79
486 487 2.127383 CGGACAAAAAGCGGACGC 60.127 61.111 8.91 8.91 42.33 5.19
498 499 2.279252 GGACGCGCATCCGTATGT 60.279 61.111 6.81 0.00 42.24 2.29
499 500 2.585869 GGACGCGCATCCGTATGTG 61.586 63.158 6.81 0.00 44.81 3.21
500 501 1.587876 GACGCGCATCCGTATGTGA 60.588 57.895 5.73 0.00 44.81 3.58
501 502 0.939577 GACGCGCATCCGTATGTGAT 60.940 55.000 5.73 0.00 44.81 3.06
502 503 1.215014 ACGCGCATCCGTATGTGATG 61.215 55.000 5.73 0.00 44.81 3.07
503 504 1.862123 GCGCATCCGTATGTGATGG 59.138 57.895 5.64 0.00 44.81 3.51
504 505 0.880278 GCGCATCCGTATGTGATGGT 60.880 55.000 5.64 0.00 44.81 3.55
505 506 1.581934 CGCATCCGTATGTGATGGTT 58.418 50.000 0.00 0.00 44.81 3.67
506 507 1.939934 CGCATCCGTATGTGATGGTTT 59.060 47.619 0.00 0.00 44.81 3.27
507 508 2.032894 CGCATCCGTATGTGATGGTTTC 60.033 50.000 0.00 0.29 44.81 2.78
508 509 2.032894 GCATCCGTATGTGATGGTTTCG 60.033 50.000 12.51 0.00 39.97 3.46
509 510 3.194861 CATCCGTATGTGATGGTTTCGT 58.805 45.455 5.82 0.00 36.74 3.85
510 511 3.322211 TCCGTATGTGATGGTTTCGTT 57.678 42.857 0.00 0.00 35.45 3.85
511 512 4.453177 TCCGTATGTGATGGTTTCGTTA 57.547 40.909 0.00 0.00 35.45 3.18
512 513 4.818642 TCCGTATGTGATGGTTTCGTTAA 58.181 39.130 0.00 0.00 35.45 2.01
513 514 5.421277 TCCGTATGTGATGGTTTCGTTAAT 58.579 37.500 0.00 0.00 35.45 1.40
514 515 5.521010 TCCGTATGTGATGGTTTCGTTAATC 59.479 40.000 0.00 0.00 35.45 1.75
515 516 5.522460 CCGTATGTGATGGTTTCGTTAATCT 59.478 40.000 0.00 0.00 0.00 2.40
516 517 6.036735 CCGTATGTGATGGTTTCGTTAATCTT 59.963 38.462 0.00 0.00 0.00 2.40
517 518 6.899771 CGTATGTGATGGTTTCGTTAATCTTG 59.100 38.462 0.00 0.00 0.00 3.02
518 519 7.201487 CGTATGTGATGGTTTCGTTAATCTTGA 60.201 37.037 0.00 0.00 0.00 3.02
519 520 6.869315 TGTGATGGTTTCGTTAATCTTGAA 57.131 33.333 0.00 0.00 0.00 2.69
520 521 6.664515 TGTGATGGTTTCGTTAATCTTGAAC 58.335 36.000 0.00 0.00 0.00 3.18
521 522 6.084277 GTGATGGTTTCGTTAATCTTGAACC 58.916 40.000 0.00 0.00 0.00 3.62
522 523 6.001460 TGATGGTTTCGTTAATCTTGAACCT 58.999 36.000 0.00 0.00 0.00 3.50
523 524 5.934935 TGGTTTCGTTAATCTTGAACCTC 57.065 39.130 0.00 0.00 0.00 3.85
536 537 8.558973 AATCTTGAACCTCAACTCTAATCTTG 57.441 34.615 0.00 0.00 32.21 3.02
612 613 4.019792 ACAATGACACACCATGCTTCTA 57.980 40.909 0.00 0.00 0.00 2.10
616 620 2.224185 TGACACACCATGCTTCTACGTT 60.224 45.455 0.00 0.00 0.00 3.99
619 623 2.157668 CACACCATGCTTCTACGTTGTC 59.842 50.000 0.00 0.00 0.00 3.18
645 649 4.464244 TGGTGTTTCTCTTCTCGATGAGAT 59.536 41.667 11.75 0.00 40.06 2.75
662 675 9.214957 TCGATGAGATTTAAAAGTAAGCTTTCA 57.785 29.630 3.20 0.00 43.52 2.69
671 684 5.751243 AAAGTAAGCTTTCACAATGACGT 57.249 34.783 3.20 0.00 40.65 4.34
672 685 6.854496 AAAGTAAGCTTTCACAATGACGTA 57.146 33.333 3.20 0.00 40.65 3.57
693 708 5.175673 CGTACCATGCATCTACATTGTACTG 59.824 44.000 13.61 6.75 42.60 2.74
694 709 5.102953 ACCATGCATCTACATTGTACTGT 57.897 39.130 0.00 0.00 0.00 3.55
695 710 6.233905 ACCATGCATCTACATTGTACTGTA 57.766 37.500 0.00 0.00 0.00 2.74
696 711 6.049149 ACCATGCATCTACATTGTACTGTAC 58.951 40.000 10.98 10.98 0.00 2.90
697 712 6.127054 ACCATGCATCTACATTGTACTGTACT 60.127 38.462 17.98 1.53 0.00 2.73
698 713 6.422100 CCATGCATCTACATTGTACTGTACTC 59.578 42.308 17.98 0.00 0.00 2.59
699 714 6.524101 TGCATCTACATTGTACTGTACTCA 57.476 37.500 17.98 6.25 0.00 3.41
700 715 7.112452 TGCATCTACATTGTACTGTACTCAT 57.888 36.000 17.98 8.15 0.00 2.90
701 716 7.203218 TGCATCTACATTGTACTGTACTCATC 58.797 38.462 17.98 0.00 0.00 2.92
702 717 7.147915 TGCATCTACATTGTACTGTACTCATCA 60.148 37.037 17.98 0.00 0.00 3.07
703 718 7.380870 GCATCTACATTGTACTGTACTCATCAG 59.619 40.741 17.98 10.18 38.68 2.90
704 719 7.939784 TCTACATTGTACTGTACTCATCAGT 57.060 36.000 17.98 10.49 46.10 3.41
705 720 7.762382 TCTACATTGTACTGTACTCATCAGTG 58.238 38.462 17.98 7.67 44.41 3.66
706 721 6.346477 ACATTGTACTGTACTCATCAGTGT 57.654 37.500 17.98 8.23 44.41 3.55
707 722 6.759272 ACATTGTACTGTACTCATCAGTGTT 58.241 36.000 17.98 0.00 44.41 3.32
708 723 7.217200 ACATTGTACTGTACTCATCAGTGTTT 58.783 34.615 17.98 0.00 44.41 2.83
709 724 7.385205 ACATTGTACTGTACTCATCAGTGTTTC 59.615 37.037 17.98 0.00 44.41 2.78
710 725 6.650427 TGTACTGTACTCATCAGTGTTTCT 57.350 37.500 17.98 0.00 44.41 2.52
761 790 1.528586 CGACTCAACTGTGCTTTCAGG 59.471 52.381 8.44 0.00 39.48 3.86
864 899 2.880890 GTCTGAAAGTCATGCACAAGGT 59.119 45.455 0.00 0.00 33.76 3.50
887 927 5.294060 GTCAGTAAGTGGGTTAAAACAACGA 59.706 40.000 0.00 0.00 0.00 3.85
953 993 4.072088 CGCGAACTTCCACCACGC 62.072 66.667 0.00 0.00 44.64 5.34
1014 1060 6.266558 CCTGTCTCCCTATATATATGCAGTCC 59.733 46.154 5.44 0.00 0.00 3.85
1034 1080 3.309961 CATCGTCCATGGATGTAGGAG 57.690 52.381 29.10 14.21 37.18 3.69
1035 1081 2.454336 TCGTCCATGGATGTAGGAGT 57.546 50.000 29.10 0.00 33.21 3.85
1036 1082 3.588210 TCGTCCATGGATGTAGGAGTA 57.412 47.619 29.10 9.23 33.21 2.59
1083 1130 1.374252 AACGCCATCTCCACGTGTC 60.374 57.895 15.65 0.00 40.44 3.67
1084 1131 2.880879 CGCCATCTCCACGTGTCG 60.881 66.667 15.65 4.85 0.00 4.35
1085 1132 2.261671 GCCATCTCCACGTGTCGT 59.738 61.111 15.65 0.00 42.36 4.34
1086 1133 1.805945 GCCATCTCCACGTGTCGTC 60.806 63.158 15.65 0.00 38.32 4.20
1087 1134 1.153823 CCATCTCCACGTGTCGTCC 60.154 63.158 15.65 0.00 38.32 4.79
1117 1164 7.555306 TCTGCATAGTACTGTAACTCTGTAG 57.445 40.000 5.39 10.94 37.52 2.74
1123 1170 2.890814 ACTGTAACTCTGTAGGTGCCT 58.109 47.619 0.00 0.00 0.00 4.75
1208 1255 1.066071 TGTCGTCTCTCCTGATCTCGT 60.066 52.381 0.00 0.00 0.00 4.18
1462 1521 2.597217 ATGGTTGTGTGTGGCGGG 60.597 61.111 0.00 0.00 0.00 6.13
1774 1835 9.874205 AAGTACAGTACGTATAATTGGCTAAAA 57.126 29.630 5.02 0.00 31.20 1.52
1790 1851 0.381801 AAAAAGTGGTGCACTGCGAG 59.618 50.000 17.98 0.00 44.62 5.03
1820 1881 3.121030 AAGTCGCGTGGCTCATGC 61.121 61.111 2.31 8.77 42.31 4.06
1869 1931 0.035458 AGCTTCGGGTTGTTCCTCAG 59.965 55.000 0.00 0.00 36.25 3.35
1971 2062 6.576662 TTAATTACTTGACCGGAAATGCAA 57.423 33.333 9.46 3.38 0.00 4.08
1972 2063 3.907894 TTACTTGACCGGAAATGCAAC 57.092 42.857 9.46 0.00 0.00 4.17
1973 2064 1.981256 ACTTGACCGGAAATGCAACT 58.019 45.000 9.46 0.00 0.00 3.16
1974 2065 3.134574 ACTTGACCGGAAATGCAACTA 57.865 42.857 9.46 0.00 0.00 2.24
1976 2067 3.440173 ACTTGACCGGAAATGCAACTATG 59.560 43.478 9.46 0.00 0.00 2.23
2129 2233 3.450578 ACAAGGTACACAACACACGTAG 58.549 45.455 0.00 0.00 0.00 3.51
2131 2235 4.097741 ACAAGGTACACAACACACGTAGTA 59.902 41.667 0.00 0.00 41.61 1.82
2167 3886 0.804989 CGTGCAATTCTCCCTTCCAC 59.195 55.000 0.00 0.00 0.00 4.02
2168 3887 1.177401 GTGCAATTCTCCCTTCCACC 58.823 55.000 0.00 0.00 0.00 4.61
2169 3888 0.776810 TGCAATTCTCCCTTCCACCA 59.223 50.000 0.00 0.00 0.00 4.17
2171 3890 1.753073 GCAATTCTCCCTTCCACCATG 59.247 52.381 0.00 0.00 0.00 3.66
2172 3891 2.885554 GCAATTCTCCCTTCCACCATGT 60.886 50.000 0.00 0.00 0.00 3.21
2173 3892 3.624707 GCAATTCTCCCTTCCACCATGTA 60.625 47.826 0.00 0.00 0.00 2.29
2185 4208 0.978151 ACCATGTACGTACTGGCCAA 59.022 50.000 28.89 12.19 33.12 4.52
2195 4218 3.381908 ACGTACTGGCCAAAACAAAATGA 59.618 39.130 7.01 0.00 0.00 2.57
2506 4694 2.046023 CTCGTCAGGGGCATTGCA 60.046 61.111 11.39 0.00 0.00 4.08
2624 5081 2.447443 TGTCTATCTTCCGACAGCACT 58.553 47.619 0.00 0.00 35.40 4.40
2640 5097 6.034150 CGACAGCACTACACGTTGATATTTTA 59.966 38.462 0.00 0.00 0.00 1.52
2735 6756 0.790814 CACCGCTCGTCTTCTTTTCC 59.209 55.000 0.00 0.00 0.00 3.13
2822 6843 7.581814 TCATAAAAATGATACATCAGGGTCCA 58.418 34.615 0.00 0.00 40.64 4.02
2863 6884 1.873903 GCCATCATCATAACGAGCCGT 60.874 52.381 0.00 0.00 43.97 5.68
2893 6915 0.251634 TGTCACCGCTGCCATATTGA 59.748 50.000 0.00 0.00 0.00 2.57
2902 6924 0.546122 TGCCATATTGAAGCCGACCT 59.454 50.000 0.00 0.00 0.00 3.85
2909 6931 0.250295 TTGAAGCCGACCTGACCTTG 60.250 55.000 0.00 0.00 0.00 3.61
2938 6960 5.066375 TGACACCTGACAAGTCTTTTTCATG 59.934 40.000 1.53 0.00 33.56 3.07
2939 6961 4.202050 ACACCTGACAAGTCTTTTTCATGC 60.202 41.667 1.53 0.00 0.00 4.06
2940 6962 3.953612 ACCTGACAAGTCTTTTTCATGCA 59.046 39.130 1.53 0.00 0.00 3.96
2941 6963 4.202050 ACCTGACAAGTCTTTTTCATGCAC 60.202 41.667 0.00 0.00 0.00 4.57
2942 6964 3.951306 TGACAAGTCTTTTTCATGCACG 58.049 40.909 0.00 0.00 0.00 5.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.449464 CCACTTTGGAAGGCATGATGA 58.551 47.619 0.00 0.00 40.96 2.92
1 2 2.953466 CCACTTTGGAAGGCATGATG 57.047 50.000 0.00 0.00 40.96 3.07
7 8 1.079612 GCATGCCACTTTGGAAGGC 60.080 57.895 6.36 0.00 46.61 4.35
8 9 0.680618 TTGCATGCCACTTTGGAAGG 59.319 50.000 16.68 0.00 40.96 3.46
9 10 1.337447 CCTTGCATGCCACTTTGGAAG 60.337 52.381 16.68 9.11 40.96 3.46
10 11 0.680618 CCTTGCATGCCACTTTGGAA 59.319 50.000 16.68 0.00 40.96 3.53
11 12 1.818959 GCCTTGCATGCCACTTTGGA 61.819 55.000 16.68 0.00 40.96 3.53
12 13 1.375013 GCCTTGCATGCCACTTTGG 60.375 57.895 16.68 9.04 41.55 3.28
13 14 0.249953 TTGCCTTGCATGCCACTTTG 60.250 50.000 16.68 0.00 38.76 2.77
14 15 0.688487 ATTGCCTTGCATGCCACTTT 59.312 45.000 16.68 0.00 38.76 2.66
15 16 0.248289 GATTGCCTTGCATGCCACTT 59.752 50.000 16.68 0.00 38.76 3.16
16 17 1.895238 GATTGCCTTGCATGCCACT 59.105 52.632 16.68 0.00 38.76 4.00
17 18 1.517694 CGATTGCCTTGCATGCCAC 60.518 57.895 16.68 2.14 38.76 5.01
18 19 1.678300 TCGATTGCCTTGCATGCCA 60.678 52.632 16.68 2.49 38.76 4.92
19 20 1.226773 GTCGATTGCCTTGCATGCC 60.227 57.895 16.68 0.00 38.76 4.40
20 21 1.584483 CGTCGATTGCCTTGCATGC 60.584 57.895 11.82 11.82 38.76 4.06
21 22 1.584483 GCGTCGATTGCCTTGCATG 60.584 57.895 0.00 0.00 38.76 4.06
22 23 2.793946 GCGTCGATTGCCTTGCAT 59.206 55.556 0.00 0.00 38.76 3.96
29 30 4.633596 CGATGCGGCGTCGATTGC 62.634 66.667 34.31 2.50 44.49 3.56
30 31 3.254654 ACGATGCGGCGTCGATTG 61.255 61.111 41.08 19.61 44.49 2.67
31 32 3.254654 CACGATGCGGCGTCGATT 61.255 61.111 41.08 23.39 44.49 3.34
41 42 1.449246 AGCAAGAGGAGCACGATGC 60.449 57.895 0.00 0.00 45.46 3.91
42 43 0.390866 ACAGCAAGAGGAGCACGATG 60.391 55.000 0.00 0.00 0.00 3.84
43 44 0.390866 CACAGCAAGAGGAGCACGAT 60.391 55.000 0.00 0.00 0.00 3.73
44 45 1.005748 CACAGCAAGAGGAGCACGA 60.006 57.895 0.00 0.00 0.00 4.35
45 46 2.675056 GCACAGCAAGAGGAGCACG 61.675 63.158 0.00 0.00 0.00 5.34
46 47 2.675056 CGCACAGCAAGAGGAGCAC 61.675 63.158 0.00 0.00 0.00 4.40
47 48 2.357881 CGCACAGCAAGAGGAGCA 60.358 61.111 0.00 0.00 0.00 4.26
48 49 3.123620 CCGCACAGCAAGAGGAGC 61.124 66.667 0.00 0.00 0.00 4.70
49 50 2.031516 CACCGCACAGCAAGAGGAG 61.032 63.158 0.26 0.00 0.00 3.69
50 51 2.031012 CACCGCACAGCAAGAGGA 59.969 61.111 0.26 0.00 0.00 3.71
51 52 3.052082 CCACCGCACAGCAAGAGG 61.052 66.667 0.00 0.00 0.00 3.69
52 53 3.730761 GCCACCGCACAGCAAGAG 61.731 66.667 0.00 0.00 34.03 2.85
85 86 3.112709 AAGCTCGAAGCCGCGTTC 61.113 61.111 4.92 1.83 43.77 3.95
86 87 3.414700 CAAGCTCGAAGCCGCGTT 61.415 61.111 4.92 0.00 43.77 4.84
90 91 3.354499 GAACGCAAGCTCGAAGCCG 62.354 63.158 1.33 3.72 43.77 5.52
91 92 2.476499 GAACGCAAGCTCGAAGCC 59.524 61.111 1.33 0.00 43.77 4.35
92 93 2.029844 AGGAACGCAAGCTCGAAGC 61.030 57.895 1.33 0.00 42.84 3.86
93 94 1.784062 CAGGAACGCAAGCTCGAAG 59.216 57.895 1.33 0.00 45.62 3.79
94 95 2.317609 GCAGGAACGCAAGCTCGAA 61.318 57.895 1.33 0.00 45.62 3.71
95 96 2.738521 GCAGGAACGCAAGCTCGA 60.739 61.111 1.33 0.00 45.62 4.04
96 97 4.139420 CGCAGGAACGCAAGCTCG 62.139 66.667 0.00 0.00 45.62 5.03
119 120 2.586792 CAAGAGGAAGGGCCGGAG 59.413 66.667 5.05 0.00 43.43 4.63
120 121 3.009115 CCAAGAGGAAGGGCCGGA 61.009 66.667 5.05 0.00 43.43 5.14
121 122 4.803908 GCCAAGAGGAAGGGCCGG 62.804 72.222 0.00 0.00 41.90 6.13
124 125 3.717294 TCGGCCAAGAGGAAGGGC 61.717 66.667 2.24 0.00 46.99 5.19
125 126 2.269241 GTCGGCCAAGAGGAAGGG 59.731 66.667 2.24 0.00 36.89 3.95
126 127 1.078848 CTGTCGGCCAAGAGGAAGG 60.079 63.158 2.24 0.00 36.89 3.46
127 128 1.743252 GCTGTCGGCCAAGAGGAAG 60.743 63.158 2.24 0.00 36.89 3.46
128 129 2.347490 GCTGTCGGCCAAGAGGAA 59.653 61.111 2.24 0.00 36.89 3.36
129 130 2.922503 TGCTGTCGGCCAAGAGGA 60.923 61.111 2.24 0.00 40.92 3.71
130 131 2.743928 GTGCTGTCGGCCAAGAGG 60.744 66.667 2.24 0.00 40.92 3.69
131 132 3.114616 CGTGCTGTCGGCCAAGAG 61.115 66.667 2.24 0.00 40.92 2.85
132 133 4.680237 CCGTGCTGTCGGCCAAGA 62.680 66.667 2.24 0.00 43.96 3.02
150 151 2.103042 CAAGAAGAAGCCGAGCGGG 61.103 63.158 11.30 0.00 39.58 6.13
151 152 2.103042 CCAAGAAGAAGCCGAGCGG 61.103 63.158 4.20 4.20 38.57 5.52
152 153 1.355066 GACCAAGAAGAAGCCGAGCG 61.355 60.000 0.00 0.00 0.00 5.03
153 154 1.355066 CGACCAAGAAGAAGCCGAGC 61.355 60.000 0.00 0.00 0.00 5.03
154 155 0.737715 CCGACCAAGAAGAAGCCGAG 60.738 60.000 0.00 0.00 0.00 4.63
155 156 1.292223 CCGACCAAGAAGAAGCCGA 59.708 57.895 0.00 0.00 0.00 5.54
156 157 2.391389 GCCGACCAAGAAGAAGCCG 61.391 63.158 0.00 0.00 0.00 5.52
157 158 2.391389 CGCCGACCAAGAAGAAGCC 61.391 63.158 0.00 0.00 0.00 4.35
158 159 1.627550 GACGCCGACCAAGAAGAAGC 61.628 60.000 0.00 0.00 0.00 3.86
159 160 1.344942 CGACGCCGACCAAGAAGAAG 61.345 60.000 0.00 0.00 38.22 2.85
160 161 1.372499 CGACGCCGACCAAGAAGAA 60.372 57.895 0.00 0.00 38.22 2.52
161 162 2.257371 CGACGCCGACCAAGAAGA 59.743 61.111 0.00 0.00 38.22 2.87
162 163 3.479269 GCGACGCCGACCAAGAAG 61.479 66.667 9.14 0.00 38.22 2.85
232 233 1.228429 CCTCTCTAGCCTCCTCCGG 60.228 68.421 0.00 0.00 0.00 5.14
233 234 1.901464 GCCTCTCTAGCCTCCTCCG 60.901 68.421 0.00 0.00 0.00 4.63
234 235 1.901464 CGCCTCTCTAGCCTCCTCC 60.901 68.421 0.00 0.00 0.00 4.30
235 236 0.889186 CTCGCCTCTCTAGCCTCCTC 60.889 65.000 0.00 0.00 0.00 3.71
236 237 1.150536 CTCGCCTCTCTAGCCTCCT 59.849 63.158 0.00 0.00 0.00 3.69
237 238 1.901464 CCTCGCCTCTCTAGCCTCC 60.901 68.421 0.00 0.00 0.00 4.30
238 239 2.561037 GCCTCGCCTCTCTAGCCTC 61.561 68.421 0.00 0.00 0.00 4.70
239 240 2.520741 GCCTCGCCTCTCTAGCCT 60.521 66.667 0.00 0.00 0.00 4.58
240 241 3.611674 GGCCTCGCCTCTCTAGCC 61.612 72.222 0.00 0.00 46.69 3.93
266 267 4.175489 ACGTGTCGATCCTCGCCG 62.175 66.667 0.00 0.00 40.21 6.46
267 268 2.278013 GACGTGTCGATCCTCGCC 60.278 66.667 0.00 0.00 40.21 5.54
278 279 1.667830 CTTGCCATGGACGACGTGT 60.668 57.895 18.40 0.00 34.14 4.49
279 280 3.027170 GCTTGCCATGGACGACGTG 62.027 63.158 18.40 0.00 35.80 4.49
280 281 2.742372 GCTTGCCATGGACGACGT 60.742 61.111 18.40 0.00 0.00 4.34
281 282 2.741985 TGCTTGCCATGGACGACG 60.742 61.111 18.40 0.00 0.00 5.12
282 283 3.044059 GCTGCTTGCCATGGACGAC 62.044 63.158 18.40 1.72 35.15 4.34
283 284 2.747460 GCTGCTTGCCATGGACGA 60.747 61.111 18.40 5.92 35.15 4.20
308 309 2.668550 AAAACTCCACCCGCTCGC 60.669 61.111 0.00 0.00 0.00 5.03
309 310 1.597027 ACAAAACTCCACCCGCTCG 60.597 57.895 0.00 0.00 0.00 5.03
310 311 1.515521 CCACAAAACTCCACCCGCTC 61.516 60.000 0.00 0.00 0.00 5.03
311 312 1.528309 CCACAAAACTCCACCCGCT 60.528 57.895 0.00 0.00 0.00 5.52
312 313 2.561037 CCCACAAAACTCCACCCGC 61.561 63.158 0.00 0.00 0.00 6.13
313 314 0.466555 TTCCCACAAAACTCCACCCG 60.467 55.000 0.00 0.00 0.00 5.28
314 315 1.686587 CTTTCCCACAAAACTCCACCC 59.313 52.381 0.00 0.00 0.00 4.61
315 316 2.623416 CTCTTTCCCACAAAACTCCACC 59.377 50.000 0.00 0.00 0.00 4.61
316 317 3.551846 TCTCTTTCCCACAAAACTCCAC 58.448 45.455 0.00 0.00 0.00 4.02
317 318 3.435026 CCTCTCTTTCCCACAAAACTCCA 60.435 47.826 0.00 0.00 0.00 3.86
318 319 3.149981 CCTCTCTTTCCCACAAAACTCC 58.850 50.000 0.00 0.00 0.00 3.85
319 320 4.086706 TCCTCTCTTTCCCACAAAACTC 57.913 45.455 0.00 0.00 0.00 3.01
320 321 4.519906 TTCCTCTCTTTCCCACAAAACT 57.480 40.909 0.00 0.00 0.00 2.66
321 322 5.592104 TTTTCCTCTCTTTCCCACAAAAC 57.408 39.130 0.00 0.00 0.00 2.43
322 323 5.896678 TCATTTTCCTCTCTTTCCCACAAAA 59.103 36.000 0.00 0.00 0.00 2.44
323 324 5.454062 TCATTTTCCTCTCTTTCCCACAAA 58.546 37.500 0.00 0.00 0.00 2.83
324 325 5.060427 TCATTTTCCTCTCTTTCCCACAA 57.940 39.130 0.00 0.00 0.00 3.33
325 326 4.104738 ACTCATTTTCCTCTCTTTCCCACA 59.895 41.667 0.00 0.00 0.00 4.17
326 327 4.457257 CACTCATTTTCCTCTCTTTCCCAC 59.543 45.833 0.00 0.00 0.00 4.61
327 328 4.104738 ACACTCATTTTCCTCTCTTTCCCA 59.895 41.667 0.00 0.00 0.00 4.37
328 329 4.457257 CACACTCATTTTCCTCTCTTTCCC 59.543 45.833 0.00 0.00 0.00 3.97
329 330 4.457257 CCACACTCATTTTCCTCTCTTTCC 59.543 45.833 0.00 0.00 0.00 3.13
330 331 5.066593 ACCACACTCATTTTCCTCTCTTTC 58.933 41.667 0.00 0.00 0.00 2.62
331 332 5.053978 ACCACACTCATTTTCCTCTCTTT 57.946 39.130 0.00 0.00 0.00 2.52
332 333 4.713792 ACCACACTCATTTTCCTCTCTT 57.286 40.909 0.00 0.00 0.00 2.85
333 334 4.141390 ACAACCACACTCATTTTCCTCTCT 60.141 41.667 0.00 0.00 0.00 3.10
334 335 4.023707 CACAACCACACTCATTTTCCTCTC 60.024 45.833 0.00 0.00 0.00 3.20
335 336 3.885297 CACAACCACACTCATTTTCCTCT 59.115 43.478 0.00 0.00 0.00 3.69
336 337 3.550842 GCACAACCACACTCATTTTCCTC 60.551 47.826 0.00 0.00 0.00 3.71
337 338 2.362077 GCACAACCACACTCATTTTCCT 59.638 45.455 0.00 0.00 0.00 3.36
338 339 2.545742 GGCACAACCACACTCATTTTCC 60.546 50.000 0.00 0.00 38.86 3.13
339 340 2.742774 GGCACAACCACACTCATTTTC 58.257 47.619 0.00 0.00 38.86 2.29
340 341 1.066908 CGGCACAACCACACTCATTTT 59.933 47.619 0.00 0.00 39.03 1.82
341 342 0.667993 CGGCACAACCACACTCATTT 59.332 50.000 0.00 0.00 39.03 2.32
342 343 1.795170 GCGGCACAACCACACTCATT 61.795 55.000 0.00 0.00 39.03 2.57
343 344 2.260869 GCGGCACAACCACACTCAT 61.261 57.895 0.00 0.00 39.03 2.90
344 345 2.899838 GCGGCACAACCACACTCA 60.900 61.111 0.00 0.00 39.03 3.41
345 346 3.660111 GGCGGCACAACCACACTC 61.660 66.667 3.07 0.00 39.03 3.51
369 370 3.375443 TACTCCTCCCCCTGGCTCG 62.375 68.421 0.00 0.00 0.00 5.03
370 371 1.458588 CTACTCCTCCCCCTGGCTC 60.459 68.421 0.00 0.00 0.00 4.70
371 372 2.699496 CTACTCCTCCCCCTGGCT 59.301 66.667 0.00 0.00 0.00 4.75
372 373 2.446802 CCTACTCCTCCCCCTGGC 60.447 72.222 0.00 0.00 0.00 4.85
373 374 2.446802 GCCTACTCCTCCCCCTGG 60.447 72.222 0.00 0.00 0.00 4.45
374 375 2.840102 CGCCTACTCCTCCCCCTG 60.840 72.222 0.00 0.00 0.00 4.45
375 376 4.159108 CCGCCTACTCCTCCCCCT 62.159 72.222 0.00 0.00 0.00 4.79
380 381 3.459063 AACGCCCGCCTACTCCTC 61.459 66.667 0.00 0.00 0.00 3.71
381 382 3.771160 CAACGCCCGCCTACTCCT 61.771 66.667 0.00 0.00 0.00 3.69
395 396 2.780149 AAGAAATGGACGCGCGCAAC 62.780 55.000 32.58 22.79 0.00 4.17
396 397 2.612567 AAGAAATGGACGCGCGCAA 61.613 52.632 32.58 17.14 0.00 4.85
397 398 3.047280 AAGAAATGGACGCGCGCA 61.047 55.556 32.58 21.73 0.00 6.09
398 399 2.574212 CAAGAAATGGACGCGCGC 60.574 61.111 32.58 23.91 0.00 6.86
399 400 1.225745 GACAAGAAATGGACGCGCG 60.226 57.895 30.96 30.96 0.00 6.86
400 401 1.134694 GGACAAGAAATGGACGCGC 59.865 57.895 5.73 0.00 0.00 6.86
401 402 1.289109 ACGGACAAGAAATGGACGCG 61.289 55.000 3.53 3.53 36.23 6.01
402 403 0.165944 CACGGACAAGAAATGGACGC 59.834 55.000 0.00 0.00 36.23 5.19
403 404 0.165944 GCACGGACAAGAAATGGACG 59.834 55.000 0.00 0.00 37.98 4.79
404 405 1.197721 CAGCACGGACAAGAAATGGAC 59.802 52.381 0.00 0.00 0.00 4.02
405 406 1.071542 TCAGCACGGACAAGAAATGGA 59.928 47.619 0.00 0.00 0.00 3.41
406 407 1.197721 GTCAGCACGGACAAGAAATGG 59.802 52.381 0.00 0.00 37.73 3.16
407 408 1.872952 TGTCAGCACGGACAAGAAATG 59.127 47.619 0.95 0.00 44.34 2.32
408 409 2.254546 TGTCAGCACGGACAAGAAAT 57.745 45.000 0.95 0.00 44.34 2.17
409 410 3.770625 TGTCAGCACGGACAAGAAA 57.229 47.368 0.95 0.00 44.34 2.52
419 420 1.198637 GAGCCTCATTTGTGTCAGCAC 59.801 52.381 0.00 0.00 45.44 4.40
420 421 1.202794 TGAGCCTCATTTGTGTCAGCA 60.203 47.619 0.00 0.00 0.00 4.41
421 422 1.527034 TGAGCCTCATTTGTGTCAGC 58.473 50.000 0.00 0.00 0.00 4.26
422 423 4.778534 ATTTGAGCCTCATTTGTGTCAG 57.221 40.909 0.00 0.00 0.00 3.51
423 424 5.534207 AAATTTGAGCCTCATTTGTGTCA 57.466 34.783 0.00 0.00 0.00 3.58
424 425 6.587608 CCTAAAATTTGAGCCTCATTTGTGTC 59.412 38.462 0.00 0.00 0.00 3.67
425 426 6.458210 CCTAAAATTTGAGCCTCATTTGTGT 58.542 36.000 0.00 0.00 0.00 3.72
426 427 5.349543 GCCTAAAATTTGAGCCTCATTTGTG 59.650 40.000 0.00 0.00 0.00 3.33
427 428 5.482006 GCCTAAAATTTGAGCCTCATTTGT 58.518 37.500 0.00 0.00 0.00 2.83
428 429 4.872124 GGCCTAAAATTTGAGCCTCATTTG 59.128 41.667 15.61 0.00 40.57 2.32
429 430 4.381932 CGGCCTAAAATTTGAGCCTCATTT 60.382 41.667 18.81 0.00 41.60 2.32
430 431 3.131046 CGGCCTAAAATTTGAGCCTCATT 59.869 43.478 18.81 0.00 41.60 2.57
431 432 2.689983 CGGCCTAAAATTTGAGCCTCAT 59.310 45.455 18.81 0.00 41.60 2.90
432 433 2.091541 CGGCCTAAAATTTGAGCCTCA 58.908 47.619 18.81 0.00 41.60 3.86
433 434 1.405463 CCGGCCTAAAATTTGAGCCTC 59.595 52.381 18.81 0.00 41.60 4.70
434 435 1.474330 CCGGCCTAAAATTTGAGCCT 58.526 50.000 18.81 0.00 41.60 4.58
435 436 0.459899 CCCGGCCTAAAATTTGAGCC 59.540 55.000 13.72 13.72 40.33 4.70
436 437 1.470051 TCCCGGCCTAAAATTTGAGC 58.530 50.000 0.00 0.00 0.00 4.26
437 438 3.181476 CCATTCCCGGCCTAAAATTTGAG 60.181 47.826 0.00 0.00 0.00 3.02
438 439 2.763448 CCATTCCCGGCCTAAAATTTGA 59.237 45.455 0.00 0.00 0.00 2.69
439 440 2.158971 CCCATTCCCGGCCTAAAATTTG 60.159 50.000 0.00 0.00 0.00 2.32
440 441 2.115427 CCCATTCCCGGCCTAAAATTT 58.885 47.619 0.00 0.00 0.00 1.82
441 442 1.007842 ACCCATTCCCGGCCTAAAATT 59.992 47.619 0.00 0.00 0.00 1.82
442 443 0.634465 ACCCATTCCCGGCCTAAAAT 59.366 50.000 0.00 0.00 0.00 1.82
443 444 0.033894 GACCCATTCCCGGCCTAAAA 60.034 55.000 0.00 0.00 0.00 1.52
444 445 0.917333 AGACCCATTCCCGGCCTAAA 60.917 55.000 0.00 0.00 0.00 1.85
445 446 1.307517 AGACCCATTCCCGGCCTAA 60.308 57.895 0.00 0.00 0.00 2.69
446 447 1.764854 GAGACCCATTCCCGGCCTA 60.765 63.158 0.00 0.00 0.00 3.93
447 448 3.090532 GAGACCCATTCCCGGCCT 61.091 66.667 0.00 0.00 0.00 5.19
448 449 4.191015 GGAGACCCATTCCCGGCC 62.191 72.222 0.00 0.00 0.00 6.13
460 461 0.875059 CTTTTTGTCCGCTGGGAGAC 59.125 55.000 0.00 0.15 44.97 3.36
461 462 0.889186 GCTTTTTGTCCGCTGGGAGA 60.889 55.000 0.00 0.00 44.97 3.71
462 463 1.581447 GCTTTTTGTCCGCTGGGAG 59.419 57.895 0.00 0.00 44.97 4.30
463 464 2.258013 CGCTTTTTGTCCGCTGGGA 61.258 57.895 0.00 0.00 41.08 4.37
464 465 2.255252 CGCTTTTTGTCCGCTGGG 59.745 61.111 0.00 0.00 0.00 4.45
465 466 2.255252 CCGCTTTTTGTCCGCTGG 59.745 61.111 0.00 0.00 0.00 4.85
466 467 1.082104 GTCCGCTTTTTGTCCGCTG 60.082 57.895 0.00 0.00 0.00 5.18
467 468 2.604174 CGTCCGCTTTTTGTCCGCT 61.604 57.895 0.00 0.00 0.00 5.52
468 469 2.127383 CGTCCGCTTTTTGTCCGC 60.127 61.111 0.00 0.00 0.00 5.54
469 470 2.127383 GCGTCCGCTTTTTGTCCG 60.127 61.111 4.10 0.00 38.26 4.79
470 471 2.127383 CGCGTCCGCTTTTTGTCC 60.127 61.111 10.21 0.00 39.32 4.02
481 482 2.279252 ACATACGGATGCGCGTCC 60.279 61.111 34.37 34.37 36.43 4.79
482 483 0.939577 ATCACATACGGATGCGCGTC 60.940 55.000 21.53 21.53 36.43 5.19
483 484 1.067416 ATCACATACGGATGCGCGT 59.933 52.632 7.78 0.00 36.43 6.01
484 485 1.488525 CATCACATACGGATGCGCG 59.511 57.895 7.78 0.00 36.12 6.86
485 486 0.880278 ACCATCACATACGGATGCGC 60.880 55.000 7.78 0.00 40.60 6.09
486 487 1.581934 AACCATCACATACGGATGCG 58.418 50.000 7.78 4.58 40.60 4.73
487 488 2.032894 CGAAACCATCACATACGGATGC 60.033 50.000 7.78 0.00 40.60 3.91
488 489 3.194861 ACGAAACCATCACATACGGATG 58.805 45.455 5.94 5.94 41.39 3.51
489 490 3.536956 ACGAAACCATCACATACGGAT 57.463 42.857 0.00 0.00 0.00 4.18
490 491 3.322211 AACGAAACCATCACATACGGA 57.678 42.857 0.00 0.00 0.00 4.69
491 492 5.522460 AGATTAACGAAACCATCACATACGG 59.478 40.000 0.00 0.00 0.00 4.02
492 493 6.583912 AGATTAACGAAACCATCACATACG 57.416 37.500 0.00 0.00 0.00 3.06
493 494 7.970384 TCAAGATTAACGAAACCATCACATAC 58.030 34.615 0.00 0.00 0.00 2.39
494 495 8.447833 GTTCAAGATTAACGAAACCATCACATA 58.552 33.333 0.00 0.00 0.00 2.29
495 496 7.305474 GTTCAAGATTAACGAAACCATCACAT 58.695 34.615 0.00 0.00 0.00 3.21
496 497 6.293735 GGTTCAAGATTAACGAAACCATCACA 60.294 38.462 0.00 0.00 0.00 3.58
497 498 6.072673 AGGTTCAAGATTAACGAAACCATCAC 60.073 38.462 5.03 0.00 0.00 3.06
498 499 6.001460 AGGTTCAAGATTAACGAAACCATCA 58.999 36.000 5.03 0.00 0.00 3.07
499 500 6.148811 TGAGGTTCAAGATTAACGAAACCATC 59.851 38.462 5.03 1.31 0.00 3.51
500 501 6.001460 TGAGGTTCAAGATTAACGAAACCAT 58.999 36.000 5.03 0.00 0.00 3.55
501 502 5.369833 TGAGGTTCAAGATTAACGAAACCA 58.630 37.500 5.03 0.00 0.00 3.67
502 503 5.934935 TGAGGTTCAAGATTAACGAAACC 57.065 39.130 0.00 0.00 0.00 3.27
503 504 6.956047 AGTTGAGGTTCAAGATTAACGAAAC 58.044 36.000 0.00 0.00 37.00 2.78
504 505 6.990349 AGAGTTGAGGTTCAAGATTAACGAAA 59.010 34.615 0.00 0.00 37.00 3.46
505 506 6.522054 AGAGTTGAGGTTCAAGATTAACGAA 58.478 36.000 0.00 0.00 37.00 3.85
506 507 6.097915 AGAGTTGAGGTTCAAGATTAACGA 57.902 37.500 0.00 0.00 37.00 3.85
507 508 7.884816 TTAGAGTTGAGGTTCAAGATTAACG 57.115 36.000 0.00 0.00 37.00 3.18
508 509 9.660180 AGATTAGAGTTGAGGTTCAAGATTAAC 57.340 33.333 0.00 0.00 37.00 2.01
510 511 9.658799 CAAGATTAGAGTTGAGGTTCAAGATTA 57.341 33.333 0.00 0.00 37.00 1.75
511 512 8.378565 TCAAGATTAGAGTTGAGGTTCAAGATT 58.621 33.333 0.00 0.00 37.00 2.40
512 513 7.911651 TCAAGATTAGAGTTGAGGTTCAAGAT 58.088 34.615 0.00 0.00 37.00 2.40
513 514 7.303182 TCAAGATTAGAGTTGAGGTTCAAGA 57.697 36.000 0.00 0.00 37.00 3.02
514 515 6.091986 GCTCAAGATTAGAGTTGAGGTTCAAG 59.908 42.308 12.66 0.00 46.59 3.02
515 516 5.934625 GCTCAAGATTAGAGTTGAGGTTCAA 59.065 40.000 12.66 0.00 46.59 2.69
516 517 5.482908 GCTCAAGATTAGAGTTGAGGTTCA 58.517 41.667 12.66 0.00 46.59 3.18
520 521 6.463995 ACTAGCTCAAGATTAGAGTTGAGG 57.536 41.667 12.66 1.19 46.59 3.86
522 523 7.011576 CGTCTACTAGCTCAAGATTAGAGTTGA 59.988 40.741 0.00 0.00 35.55 3.18
523 524 7.129622 CGTCTACTAGCTCAAGATTAGAGTTG 58.870 42.308 0.00 0.00 35.55 3.16
535 536 3.688185 CAGGTACAACGTCTACTAGCTCA 59.312 47.826 0.00 0.00 0.00 4.26
536 537 3.065095 CCAGGTACAACGTCTACTAGCTC 59.935 52.174 0.00 0.00 0.00 4.09
593 594 3.002791 CGTAGAAGCATGGTGTGTCATT 58.997 45.455 0.00 0.00 0.00 2.57
599 600 2.413837 GACAACGTAGAAGCATGGTGT 58.586 47.619 0.00 0.00 38.07 4.16
601 602 1.623811 AGGACAACGTAGAAGCATGGT 59.376 47.619 0.00 0.00 0.00 3.55
612 613 2.093128 AGAGAAACACCAAGGACAACGT 60.093 45.455 0.00 0.00 0.00 3.99
616 620 3.492656 CGAGAAGAGAAACACCAAGGACA 60.493 47.826 0.00 0.00 0.00 4.02
619 623 3.386768 TCGAGAAGAGAAACACCAAGG 57.613 47.619 0.00 0.00 0.00 3.61
645 649 8.185505 ACGTCATTGTGAAAGCTTACTTTTAAA 58.814 29.630 0.00 0.00 46.20 1.52
656 669 3.747193 CATGGTACGTCATTGTGAAAGC 58.253 45.455 0.00 0.00 0.00 3.51
662 675 3.266510 AGATGCATGGTACGTCATTGT 57.733 42.857 2.46 0.00 0.00 2.71
671 684 6.233905 ACAGTACAATGTAGATGCATGGTA 57.766 37.500 2.46 0.00 34.97 3.25
672 685 5.102953 ACAGTACAATGTAGATGCATGGT 57.897 39.130 2.46 0.00 36.94 3.55
693 708 7.224753 TGTTCTTTGAGAAACACTGATGAGTAC 59.775 37.037 0.00 0.00 35.75 2.73
694 709 7.272244 TGTTCTTTGAGAAACACTGATGAGTA 58.728 34.615 0.00 0.00 35.75 2.59
695 710 6.115446 TGTTCTTTGAGAAACACTGATGAGT 58.885 36.000 0.00 0.00 35.75 3.41
696 711 6.609237 TGTTCTTTGAGAAACACTGATGAG 57.391 37.500 0.00 0.00 35.75 2.90
697 712 7.572523 ATTGTTCTTTGAGAAACACTGATGA 57.427 32.000 0.00 0.00 35.75 2.92
698 713 9.734620 TTAATTGTTCTTTGAGAAACACTGATG 57.265 29.630 0.00 0.00 35.75 3.07
699 714 9.956720 CTTAATTGTTCTTTGAGAAACACTGAT 57.043 29.630 0.00 0.00 35.75 2.90
700 715 8.405531 CCTTAATTGTTCTTTGAGAAACACTGA 58.594 33.333 0.00 0.00 35.75 3.41
701 716 7.168135 GCCTTAATTGTTCTTTGAGAAACACTG 59.832 37.037 0.00 0.00 35.75 3.66
702 717 7.203218 GCCTTAATTGTTCTTTGAGAAACACT 58.797 34.615 0.00 0.00 35.75 3.55
703 718 6.142320 CGCCTTAATTGTTCTTTGAGAAACAC 59.858 38.462 0.00 0.00 35.75 3.32
704 719 6.038825 TCGCCTTAATTGTTCTTTGAGAAACA 59.961 34.615 0.00 0.00 35.75 2.83
705 720 6.435428 TCGCCTTAATTGTTCTTTGAGAAAC 58.565 36.000 0.00 0.00 35.75 2.78
706 721 6.627395 TCGCCTTAATTGTTCTTTGAGAAA 57.373 33.333 0.00 0.00 35.75 2.52
707 722 6.627395 TTCGCCTTAATTGTTCTTTGAGAA 57.373 33.333 0.00 0.00 0.00 2.87
708 723 6.262273 AGTTTCGCCTTAATTGTTCTTTGAGA 59.738 34.615 0.00 0.00 0.00 3.27
709 724 6.438763 AGTTTCGCCTTAATTGTTCTTTGAG 58.561 36.000 0.00 0.00 0.00 3.02
710 725 6.385649 AGTTTCGCCTTAATTGTTCTTTGA 57.614 33.333 0.00 0.00 0.00 2.69
761 790 2.738846 CTGTTCATGTGAGTGGTACAGC 59.261 50.000 0.00 0.00 41.80 4.40
791 826 8.247562 ACTAGCTAGTCTACATGTCTCAAAAAG 58.752 37.037 20.95 0.00 0.00 2.27
792 827 8.123639 ACTAGCTAGTCTACATGTCTCAAAAA 57.876 34.615 20.95 0.00 0.00 1.94
793 828 7.704578 ACTAGCTAGTCTACATGTCTCAAAA 57.295 36.000 20.95 0.00 0.00 2.44
794 829 7.499563 CCTACTAGCTAGTCTACATGTCTCAAA 59.500 40.741 29.28 6.38 37.73 2.69
795 830 6.993308 CCTACTAGCTAGTCTACATGTCTCAA 59.007 42.308 29.28 6.81 37.73 3.02
796 831 6.326843 TCCTACTAGCTAGTCTACATGTCTCA 59.673 42.308 29.28 7.02 37.73 3.27
797 832 6.761312 TCCTACTAGCTAGTCTACATGTCTC 58.239 44.000 29.28 0.00 37.73 3.36
864 899 5.426504 TCGTTGTTTTAACCCACTTACTGA 58.573 37.500 0.00 0.00 0.00 3.41
908 948 8.456471 CAAGTCGTTATAGGAATATGATACGGA 58.544 37.037 0.00 0.00 0.00 4.69
919 959 1.799917 CGCGGCAAGTCGTTATAGGAA 60.800 52.381 0.00 0.00 0.00 3.36
924 964 0.389426 AGTTCGCGGCAAGTCGTTAT 60.389 50.000 6.13 0.00 0.00 1.89
925 965 0.598158 AAGTTCGCGGCAAGTCGTTA 60.598 50.000 6.13 0.00 0.00 3.18
926 966 1.828331 GAAGTTCGCGGCAAGTCGTT 61.828 55.000 6.13 0.00 0.00 3.85
927 967 2.279918 AAGTTCGCGGCAAGTCGT 60.280 55.556 6.13 0.00 0.00 4.34
953 993 3.902162 ATGCACGCAAGCGCCAAAG 62.902 57.895 15.09 0.00 46.92 2.77
1014 1060 2.630098 ACTCCTACATCCATGGACGATG 59.370 50.000 18.99 14.62 42.37 3.84
1028 1074 4.177026 CTGTGCTGTTGATGTACTCCTAC 58.823 47.826 0.00 0.00 0.00 3.18
1031 1077 1.734465 GCTGTGCTGTTGATGTACTCC 59.266 52.381 0.00 0.00 0.00 3.85
1032 1078 2.693069 AGCTGTGCTGTTGATGTACTC 58.307 47.619 0.00 0.00 37.57 2.59
1033 1079 2.847327 AGCTGTGCTGTTGATGTACT 57.153 45.000 0.00 0.00 37.57 2.73
1034 1080 2.807967 TGAAGCTGTGCTGTTGATGTAC 59.192 45.455 0.00 0.00 39.62 2.90
1035 1081 3.069289 CTGAAGCTGTGCTGTTGATGTA 58.931 45.455 0.00 0.00 39.62 2.29
1036 1082 1.878088 CTGAAGCTGTGCTGTTGATGT 59.122 47.619 0.00 0.00 39.62 3.06
1083 1130 0.308068 ACTATGCAGATCGACGGACG 59.692 55.000 0.00 0.00 44.09 4.79
1084 1131 2.548904 AGTACTATGCAGATCGACGGAC 59.451 50.000 0.00 0.00 0.00 4.79
1085 1132 2.548480 CAGTACTATGCAGATCGACGGA 59.452 50.000 0.00 0.00 0.00 4.69
1086 1133 2.290916 ACAGTACTATGCAGATCGACGG 59.709 50.000 0.00 0.00 0.00 4.79
1087 1134 3.610786 ACAGTACTATGCAGATCGACG 57.389 47.619 0.00 0.00 0.00 5.12
1129 1176 2.807631 CTTGGCACATGCTTGCGGTC 62.808 60.000 3.48 0.00 44.00 4.79
1192 1239 2.011222 ACGAACGAGATCAGGAGAGAC 58.989 52.381 0.14 0.00 0.00 3.36
1208 1255 1.299648 CCAGGGGCTTGATGACGAA 59.700 57.895 0.00 0.00 0.00 3.85
1414 1467 4.400109 TCGTCGTCACTGCCTCGC 62.400 66.667 0.00 0.00 0.00 5.03
1754 1813 7.825761 ACCACTTTTTAGCCAATTATACGTACT 59.174 33.333 0.00 0.00 0.00 2.73
1755 1814 7.906527 CACCACTTTTTAGCCAATTATACGTAC 59.093 37.037 0.00 0.00 0.00 3.67
1756 1815 7.414319 GCACCACTTTTTAGCCAATTATACGTA 60.414 37.037 0.00 0.00 0.00 3.57
1757 1816 6.624204 GCACCACTTTTTAGCCAATTATACGT 60.624 38.462 0.00 0.00 0.00 3.57
1758 1817 5.741982 GCACCACTTTTTAGCCAATTATACG 59.258 40.000 0.00 0.00 0.00 3.06
1759 1818 6.530181 GTGCACCACTTTTTAGCCAATTATAC 59.470 38.462 5.22 0.00 0.00 1.47
1760 1819 6.435904 AGTGCACCACTTTTTAGCCAATTATA 59.564 34.615 14.63 0.00 42.59 0.98
1761 1820 5.245977 AGTGCACCACTTTTTAGCCAATTAT 59.754 36.000 14.63 0.00 42.59 1.28
1774 1835 2.281070 CCTCGCAGTGCACCACTT 60.281 61.111 16.83 0.00 42.59 3.16
1820 1881 6.648725 ACCAACGAAACAATGAAAAATATGGG 59.351 34.615 0.00 0.00 0.00 4.00
1886 1948 8.948853 ATTCAACAACACTGATAAAACATACG 57.051 30.769 0.00 0.00 0.00 3.06
1955 2046 4.019919 CATAGTTGCATTTCCGGTCAAG 57.980 45.455 0.00 0.00 0.00 3.02
1971 2062 3.828451 ACACATTTTGAGCCTTGCATAGT 59.172 39.130 0.00 0.00 0.00 2.12
1972 2063 4.171005 CACACATTTTGAGCCTTGCATAG 58.829 43.478 0.00 0.00 0.00 2.23
1973 2064 3.614630 GCACACATTTTGAGCCTTGCATA 60.615 43.478 0.00 0.00 35.89 3.14
1974 2065 2.868839 GCACACATTTTGAGCCTTGCAT 60.869 45.455 0.00 0.00 35.89 3.96
1976 2067 1.142474 GCACACATTTTGAGCCTTGC 58.858 50.000 0.00 0.00 35.89 4.01
1981 2072 2.397549 GTCAAGGCACACATTTTGAGC 58.602 47.619 0.00 0.00 40.84 4.26
1982 2073 2.361757 TGGTCAAGGCACACATTTTGAG 59.638 45.455 0.00 0.00 30.86 3.02
1983 2074 2.382882 TGGTCAAGGCACACATTTTGA 58.617 42.857 0.00 0.00 0.00 2.69
1984 2075 2.886862 TGGTCAAGGCACACATTTTG 57.113 45.000 0.00 0.00 0.00 2.44
1985 2076 2.765699 ACTTGGTCAAGGCACACATTTT 59.234 40.909 14.29 0.00 42.53 1.82
2089 2193 3.942829 TGTCTGCTAAGGAAGACCATTG 58.057 45.455 2.16 0.00 45.35 2.82
2091 2195 3.054802 CCTTGTCTGCTAAGGAAGACCAT 60.055 47.826 0.00 0.00 45.35 3.55
2167 3886 2.102070 TTTGGCCAGTACGTACATGG 57.898 50.000 26.55 26.63 37.15 3.66
2168 3887 2.809119 TGTTTTGGCCAGTACGTACATG 59.191 45.455 26.55 19.64 0.00 3.21
2169 3888 3.128852 TGTTTTGGCCAGTACGTACAT 57.871 42.857 26.55 9.84 0.00 2.29
2171 3890 3.967203 TTTGTTTTGGCCAGTACGTAC 57.033 42.857 18.10 18.10 0.00 3.67
2172 3891 4.579340 TCATTTTGTTTTGGCCAGTACGTA 59.421 37.500 5.11 0.00 0.00 3.57
2173 3892 3.381908 TCATTTTGTTTTGGCCAGTACGT 59.618 39.130 5.11 0.00 0.00 3.57
2344 4373 5.351233 TGCAAAGAACAAACGAACGATAT 57.649 34.783 0.14 0.00 0.00 1.63
2378 4407 2.430921 GACCGACCACGTCTGCAG 60.431 66.667 7.63 7.63 37.88 4.41
2379 4408 2.570284 ATGACCGACCACGTCTGCA 61.570 57.895 0.00 0.00 37.88 4.41
2380 4409 2.094659 CATGACCGACCACGTCTGC 61.095 63.158 0.00 0.00 37.88 4.26
2381 4410 0.732880 GACATGACCGACCACGTCTG 60.733 60.000 0.00 0.00 37.88 3.51
2382 4411 1.585006 GACATGACCGACCACGTCT 59.415 57.895 0.00 0.00 37.88 4.18
2383 4412 1.800315 CGACATGACCGACCACGTC 60.800 63.158 0.00 0.00 37.88 4.34
2476 4664 2.034812 CCTGACGAGGCTTCCTACATAC 59.965 54.545 0.00 0.00 31.76 2.39
2595 5052 4.098044 GTCGGAAGATAGACATCAGGTTCA 59.902 45.833 0.00 0.00 45.19 3.18
2640 5097 7.205515 AGGTGTATCTCCATTTCTGAAGAAT 57.794 36.000 0.00 0.00 33.54 2.40
2652 5109 3.774766 ACAGTGCATAAGGTGTATCTCCA 59.225 43.478 0.00 0.00 0.00 3.86
2653 5110 4.408182 ACAGTGCATAAGGTGTATCTCC 57.592 45.455 0.00 0.00 0.00 3.71
2654 5111 5.874810 TGAAACAGTGCATAAGGTGTATCTC 59.125 40.000 0.00 0.00 0.00 2.75
2655 5112 5.643777 GTGAAACAGTGCATAAGGTGTATCT 59.356 40.000 0.00 0.00 36.32 1.98
2692 5194 9.439500 GTGGTACTACATCTGTTTTGGTATTTA 57.561 33.333 4.23 0.00 0.00 1.40
2695 5197 6.412214 GGTGGTACTACATCTGTTTTGGTAT 58.588 40.000 11.80 0.00 0.00 2.73
2696 5198 5.567224 CGGTGGTACTACATCTGTTTTGGTA 60.567 44.000 11.80 0.00 0.00 3.25
2697 5199 4.648651 GGTGGTACTACATCTGTTTTGGT 58.351 43.478 11.80 0.00 0.00 3.67
2698 5200 3.682858 CGGTGGTACTACATCTGTTTTGG 59.317 47.826 11.80 0.00 0.00 3.28
2699 5201 3.124636 GCGGTGGTACTACATCTGTTTTG 59.875 47.826 11.80 0.00 0.00 2.44
2700 5202 3.007614 AGCGGTGGTACTACATCTGTTTT 59.992 43.478 11.80 0.00 0.00 2.43
2701 5203 2.565834 AGCGGTGGTACTACATCTGTTT 59.434 45.455 11.80 0.00 0.00 2.83
2717 5219 0.680061 AGGAAAAGAAGACGAGCGGT 59.320 50.000 0.00 0.00 0.00 5.68
2776 6797 9.585099 TTATGATTTGGATGTTGCTTTGTAATC 57.415 29.630 0.00 0.00 0.00 1.75
2816 6837 1.272425 TGTTTGGTGATCCATGGACCC 60.272 52.381 18.99 17.48 43.91 4.46
2822 6843 2.892852 CAGTGGTTGTTTGGTGATCCAT 59.107 45.455 0.00 0.00 43.91 3.41
2832 6853 2.596346 TGATGATGGCAGTGGTTGTTT 58.404 42.857 0.00 0.00 0.00 2.83
2882 6904 0.947244 GGTCGGCTTCAATATGGCAG 59.053 55.000 0.00 0.00 0.00 4.85
2893 6915 1.371558 GACAAGGTCAGGTCGGCTT 59.628 57.895 0.00 0.00 32.09 4.35
2902 6924 1.000843 CAGGTGTCATCGACAAGGTCA 59.999 52.381 0.00 0.00 44.49 4.02
2909 6931 2.029828 AGACTTGTCAGGTGTCATCGAC 60.030 50.000 3.49 2.36 33.56 4.20


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.