Multiple sequence alignment - TraesCS5D01G480700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G480700 chr5D 100.000 3377 0 0 1 3377 518872247 518875623 0.000000e+00 6237.0
1 TraesCS5D01G480700 chr5B 96.239 2127 53 5 416 2532 652520419 652522528 0.000000e+00 3459.0
2 TraesCS5D01G480700 chr5B 94.321 810 40 3 2574 3377 652522678 652523487 0.000000e+00 1236.0
3 TraesCS5D01G480700 chr5B 89.167 120 11 2 203 321 652519816 652519934 7.550000e-32 148.0
4 TraesCS5D01G480700 chr5B 95.604 91 4 0 325 415 652520213 652520303 2.720000e-31 147.0
5 TraesCS5D01G480700 chr5B 100.000 33 0 0 2546 2578 652522567 652522599 1.010000e-05 62.1
6 TraesCS5D01G480700 chr5A 94.293 1174 48 5 1651 2813 645423456 645424621 0.000000e+00 1779.0
7 TraesCS5D01G480700 chr5A 92.896 366 18 5 2809 3168 645424781 645425144 2.990000e-145 525.0
8 TraesCS5D01G480700 chr5A 93.953 215 11 2 3164 3377 645426866 645427079 1.170000e-84 324.0
9 TraesCS5D01G480700 chr5A 92.053 151 11 1 1470 1620 645423314 645423463 9.490000e-51 211.0
10 TraesCS5D01G480700 chr2D 87.510 1233 105 28 362 1576 631239524 631238323 0.000000e+00 1378.0
11 TraesCS5D01G480700 chr2D 81.159 759 96 14 1720 2454 631238245 631237510 1.760000e-157 566.0
12 TraesCS5D01G480700 chr2D 87.017 362 40 6 3021 3377 631236175 631235816 5.250000e-108 401.0
13 TraesCS5D01G480700 chr2D 94.805 77 4 0 2466 2542 631237373 631237297 1.650000e-23 121.0
14 TraesCS5D01G480700 chr2A 89.245 1060 80 9 528 1575 760118864 760119901 0.000000e+00 1295.0
15 TraesCS5D01G480700 chr2A 83.237 1038 147 17 533 1563 25475206 25474189 0.000000e+00 928.0
16 TraesCS5D01G480700 chr2A 81.705 880 118 14 1688 2542 760119962 760120823 0.000000e+00 693.0
17 TraesCS5D01G480700 chr2A 88.202 356 34 7 3027 3377 760121963 760122315 5.210000e-113 418.0
18 TraesCS5D01G480700 chr2A 88.660 97 8 3 359 453 760118728 760118823 7.660000e-22 115.0
19 TraesCS5D01G480700 chr2B 86.154 1235 106 30 364 1576 744388441 744389632 0.000000e+00 1273.0
20 TraesCS5D01G480700 chr2B 84.082 1068 96 31 362 1412 774716124 774715114 0.000000e+00 963.0
21 TraesCS5D01G480700 chr2B 87.089 395 35 4 1688 2068 744389686 744390078 1.860000e-117 433.0
22 TraesCS5D01G480700 chr2B 87.989 358 34 9 3027 3377 774692186 774691831 6.740000e-112 414.0
23 TraesCS5D01G480700 chr2B 87.079 356 38 8 3027 3376 744391610 744391963 2.440000e-106 396.0
24 TraesCS5D01G480700 chr2B 93.043 115 8 0 1462 1576 774715099 774714985 5.800000e-38 169.0
25 TraesCS5D01G480700 chr2B 93.258 89 5 1 2916 3004 227276362 227276275 2.730000e-26 130.0
26 TraesCS5D01G480700 chr3D 80.424 802 138 18 639 1429 560826993 560827786 8.070000e-166 593.0
27 TraesCS5D01G480700 chr3D 78.579 929 166 25 652 1553 560640241 560641163 1.750000e-162 582.0
28 TraesCS5D01G480700 chr3D 79.315 788 138 22 652 1425 560269466 560268690 2.310000e-146 529.0
29 TraesCS5D01G480700 chr3D 83.568 213 28 3 1 206 548971691 548971903 3.440000e-45 193.0
30 TraesCS5D01G480700 chr3B 79.594 789 138 21 654 1430 744599123 744598346 8.240000e-151 544.0
31 TraesCS5D01G480700 chr3B 78.967 794 152 14 648 1432 745450336 745449549 8.300000e-146 527.0
32 TraesCS5D01G480700 chr3B 94.737 152 6 2 1 151 154929396 154929546 5.630000e-58 235.0
33 TraesCS5D01G480700 chr3B 92.258 155 7 2 1 151 40927488 40927641 7.340000e-52 215.0
34 TraesCS5D01G480700 chr1A 90.367 218 16 3 1 213 568649367 568649584 7.130000e-72 281.0
35 TraesCS5D01G480700 chr1B 94.040 151 6 3 1 151 443565963 443566110 3.390000e-55 226.0
36 TraesCS5D01G480700 chr6A 92.157 153 9 2 1 151 427428902 427428751 2.640000e-51 213.0
37 TraesCS5D01G480700 chr6A 92.308 91 6 1 2917 3007 354019334 354019423 9.840000e-26 128.0
38 TraesCS5D01G480700 chr6B 86.842 190 16 5 4 184 279809856 279809667 1.590000e-48 204.0
39 TraesCS5D01G480700 chr6B 84.951 206 19 6 1 194 640350735 640350940 7.390000e-47 198.0
40 TraesCS5D01G480700 chr4B 82.018 228 24 14 4 218 73466814 73466591 9.630000e-41 178.0
41 TraesCS5D01G480700 chr6D 95.455 88 3 1 2916 3003 84938544 84938458 4.540000e-29 139.0
42 TraesCS5D01G480700 chr6D 95.402 87 3 1 2917 3003 84938458 84938543 1.630000e-28 137.0
43 TraesCS5D01G480700 chr6D 93.258 89 5 1 2916 3004 413410126 413410039 2.730000e-26 130.0
44 TraesCS5D01G480700 chr6D 91.667 96 5 3 2917 3011 413410040 413410133 2.730000e-26 130.0
45 TraesCS5D01G480700 chr7B 93.258 89 5 1 2916 3004 521143307 521143220 2.730000e-26 130.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G480700 chr5D 518872247 518875623 3376 False 6237.000000 6237 100.00000 1 3377 1 chr5D.!!$F1 3376
1 TraesCS5D01G480700 chr5B 652519816 652523487 3671 False 1010.420000 3459 95.06620 203 3377 5 chr5B.!!$F1 3174
2 TraesCS5D01G480700 chr5A 645423314 645427079 3765 False 709.750000 1779 93.29875 1470 3377 4 chr5A.!!$F1 1907
3 TraesCS5D01G480700 chr2D 631235816 631239524 3708 True 616.500000 1378 87.62275 362 3377 4 chr2D.!!$R1 3015
4 TraesCS5D01G480700 chr2A 25474189 25475206 1017 True 928.000000 928 83.23700 533 1563 1 chr2A.!!$R1 1030
5 TraesCS5D01G480700 chr2A 760118728 760122315 3587 False 630.250000 1295 86.95300 359 3377 4 chr2A.!!$F1 3018
6 TraesCS5D01G480700 chr2B 744388441 744391963 3522 False 700.666667 1273 86.77400 364 3376 3 chr2B.!!$F1 3012
7 TraesCS5D01G480700 chr2B 774714985 774716124 1139 True 566.000000 963 88.56250 362 1576 2 chr2B.!!$R3 1214
8 TraesCS5D01G480700 chr3D 560826993 560827786 793 False 593.000000 593 80.42400 639 1429 1 chr3D.!!$F3 790
9 TraesCS5D01G480700 chr3D 560640241 560641163 922 False 582.000000 582 78.57900 652 1553 1 chr3D.!!$F2 901
10 TraesCS5D01G480700 chr3D 560268690 560269466 776 True 529.000000 529 79.31500 652 1425 1 chr3D.!!$R1 773
11 TraesCS5D01G480700 chr3B 744598346 744599123 777 True 544.000000 544 79.59400 654 1430 1 chr3B.!!$R1 776
12 TraesCS5D01G480700 chr3B 745449549 745450336 787 True 527.000000 527 78.96700 648 1432 1 chr3B.!!$R2 784

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
110 111 0.109086 CTGCTAGTGGAGTGGACACG 60.109 60.0 0.00 0.0 43.41 4.49 F
113 114 0.388649 CTAGTGGAGTGGACACGCAC 60.389 60.0 8.38 5.0 43.41 5.34 F
118 119 0.531974 GGAGTGGACACGCACAGAAA 60.532 55.0 8.38 0.0 36.20 2.52 F
173 174 0.674534 AGGGAGTAATCGTGCGGATC 59.325 55.0 0.00 0.0 33.02 3.36 F
174 175 0.674534 GGGAGTAATCGTGCGGATCT 59.325 55.0 0.00 0.0 33.02 2.75 F
409 686 0.804989 CCGACCCAAGAAGAACATGC 59.195 55.0 0.00 0.0 0.00 4.06 F
1805 2313 0.846693 ACTTGGCCTTGGAACTCACT 59.153 50.0 3.32 0.0 0.00 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1532 2019 0.244721 GGTGTTGCCAATCTCCAAGC 59.755 55.000 0.00 0.0 37.17 4.01 R
1966 2496 1.021390 CGAGCCTTTTCGGACTGCAT 61.021 55.000 0.00 0.0 36.95 3.96 R
2007 2537 1.140052 TCGAGCCAAAACTTGAGACCA 59.860 47.619 0.00 0.0 0.00 4.02 R
2146 2676 5.588648 CGGACACCACAATAACCATATTCTT 59.411 40.000 0.00 0.0 29.08 2.52 R
2286 2816 1.520666 CCCATAAACCGGACGCTCT 59.479 57.895 9.46 0.0 0.00 4.09 R
2309 2839 3.326588 TGGCAAAACCTCAGAAGCTAGTA 59.673 43.478 0.00 0.0 40.22 1.82 R
3003 4398 1.333931 CACGCGAGCCTAGATAACTGA 59.666 52.381 15.93 0.0 0.00 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 9.747293 AACATTTTAAATTTTTGCATTGGGAAG 57.253 25.926 0.00 0.00 0.00 3.46
27 28 9.129532 ACATTTTAAATTTTTGCATTGGGAAGA 57.870 25.926 0.00 0.00 0.00 2.87
28 29 9.962783 CATTTTAAATTTTTGCATTGGGAAGAA 57.037 25.926 0.00 0.00 0.00 2.52
31 32 9.571816 TTTAAATTTTTGCATTGGGAAGAATCT 57.428 25.926 0.00 0.00 29.73 2.40
32 33 9.571816 TTAAATTTTTGCATTGGGAAGAATCTT 57.428 25.926 0.00 0.00 29.73 2.40
33 34 8.467963 AAATTTTTGCATTGGGAAGAATCTTT 57.532 26.923 0.00 0.00 29.73 2.52
34 35 6.864360 TTTTTGCATTGGGAAGAATCTTTG 57.136 33.333 0.00 0.00 0.00 2.77
35 36 5.804944 TTTGCATTGGGAAGAATCTTTGA 57.195 34.783 0.00 0.00 0.00 2.69
36 37 6.363167 TTTGCATTGGGAAGAATCTTTGAT 57.637 33.333 0.00 0.00 0.00 2.57
37 38 5.333299 TGCATTGGGAAGAATCTTTGATG 57.667 39.130 0.00 1.48 0.00 3.07
38 39 5.018149 TGCATTGGGAAGAATCTTTGATGA 58.982 37.500 0.00 0.00 0.00 2.92
39 40 5.105635 TGCATTGGGAAGAATCTTTGATGAC 60.106 40.000 0.00 0.00 0.00 3.06
40 41 5.105635 GCATTGGGAAGAATCTTTGATGACA 60.106 40.000 0.00 0.00 0.00 3.58
41 42 6.406624 GCATTGGGAAGAATCTTTGATGACAT 60.407 38.462 0.00 0.00 0.00 3.06
42 43 6.764308 TTGGGAAGAATCTTTGATGACATC 57.236 37.500 8.59 8.59 0.00 3.06
43 44 5.818887 TGGGAAGAATCTTTGATGACATCA 58.181 37.500 14.24 14.24 37.55 3.07
44 45 6.429151 TGGGAAGAATCTTTGATGACATCAT 58.571 36.000 18.62 3.57 39.39 2.45
78 79 7.546778 TTTTTCTGCATGTATACGATTAGCA 57.453 32.000 0.00 3.33 0.00 3.49
79 80 7.546778 TTTTCTGCATGTATACGATTAGCAA 57.453 32.000 0.00 0.00 0.00 3.91
80 81 6.525121 TTCTGCATGTATACGATTAGCAAC 57.475 37.500 0.00 0.00 0.00 4.17
81 82 5.842907 TCTGCATGTATACGATTAGCAACT 58.157 37.500 0.00 0.00 0.00 3.16
82 83 5.691754 TCTGCATGTATACGATTAGCAACTG 59.308 40.000 0.00 0.00 0.00 3.16
83 84 4.211164 TGCATGTATACGATTAGCAACTGC 59.789 41.667 0.00 0.00 42.49 4.40
98 99 5.803020 GCAACTGCTAATTAACTGCTAGT 57.197 39.130 0.00 0.00 38.21 2.57
99 100 5.563842 GCAACTGCTAATTAACTGCTAGTG 58.436 41.667 0.00 0.00 38.21 2.74
100 101 5.447818 GCAACTGCTAATTAACTGCTAGTGG 60.448 44.000 0.00 0.00 38.21 4.00
101 102 5.677319 ACTGCTAATTAACTGCTAGTGGA 57.323 39.130 0.00 0.00 0.00 4.02
102 103 5.665459 ACTGCTAATTAACTGCTAGTGGAG 58.335 41.667 0.00 0.00 37.67 3.86
103 104 5.187967 ACTGCTAATTAACTGCTAGTGGAGT 59.812 40.000 0.00 0.00 46.96 3.85
104 105 5.419542 TGCTAATTAACTGCTAGTGGAGTG 58.580 41.667 0.00 0.00 44.18 3.51
105 106 4.811557 GCTAATTAACTGCTAGTGGAGTGG 59.188 45.833 0.00 0.00 44.18 4.00
106 107 5.395324 GCTAATTAACTGCTAGTGGAGTGGA 60.395 44.000 0.00 0.00 44.18 4.02
107 108 3.955650 TTAACTGCTAGTGGAGTGGAC 57.044 47.619 0.00 0.00 44.18 4.02
108 109 1.717032 AACTGCTAGTGGAGTGGACA 58.283 50.000 0.00 0.00 44.18 4.02
109 110 0.969894 ACTGCTAGTGGAGTGGACAC 59.030 55.000 0.00 0.00 43.30 3.67
110 111 0.109086 CTGCTAGTGGAGTGGACACG 60.109 60.000 0.00 0.00 43.41 4.49
111 112 1.446272 GCTAGTGGAGTGGACACGC 60.446 63.158 0.00 0.00 43.41 5.34
112 113 1.964448 CTAGTGGAGTGGACACGCA 59.036 57.895 8.38 0.00 43.41 5.24
113 114 0.388649 CTAGTGGAGTGGACACGCAC 60.389 60.000 8.38 5.00 43.41 5.34
114 115 1.110518 TAGTGGAGTGGACACGCACA 61.111 55.000 8.38 1.73 43.41 4.57
115 116 1.956170 GTGGAGTGGACACGCACAG 60.956 63.158 8.38 0.00 36.20 3.66
116 117 2.131067 TGGAGTGGACACGCACAGA 61.131 57.895 8.38 0.00 36.20 3.41
117 118 1.069090 GGAGTGGACACGCACAGAA 59.931 57.895 8.38 0.00 36.20 3.02
118 119 0.531974 GGAGTGGACACGCACAGAAA 60.532 55.000 8.38 0.00 36.20 2.52
119 120 1.295792 GAGTGGACACGCACAGAAAA 58.704 50.000 1.23 0.00 36.20 2.29
120 121 1.668751 GAGTGGACACGCACAGAAAAA 59.331 47.619 1.23 0.00 36.20 1.94
142 143 7.946655 AAAATAAGATGAAGATGCATGCATG 57.053 32.000 36.73 22.70 36.70 4.06
155 156 3.079960 CATGCATGCAAGCTAGGAAAG 57.920 47.619 26.68 0.96 34.99 2.62
156 157 1.466856 TGCATGCAAGCTAGGAAAGG 58.533 50.000 20.30 0.00 34.99 3.11
157 158 0.743097 GCATGCAAGCTAGGAAAGGG 59.257 55.000 14.21 0.00 0.00 3.95
158 159 1.683011 GCATGCAAGCTAGGAAAGGGA 60.683 52.381 14.21 0.00 0.00 4.20
159 160 2.295885 CATGCAAGCTAGGAAAGGGAG 58.704 52.381 0.00 0.00 0.00 4.30
160 161 1.362224 TGCAAGCTAGGAAAGGGAGT 58.638 50.000 0.00 0.00 0.00 3.85
161 162 2.546899 TGCAAGCTAGGAAAGGGAGTA 58.453 47.619 0.00 0.00 0.00 2.59
162 163 2.910319 TGCAAGCTAGGAAAGGGAGTAA 59.090 45.455 0.00 0.00 0.00 2.24
163 164 3.523564 TGCAAGCTAGGAAAGGGAGTAAT 59.476 43.478 0.00 0.00 0.00 1.89
164 165 4.130857 GCAAGCTAGGAAAGGGAGTAATC 58.869 47.826 0.00 0.00 0.00 1.75
165 166 4.372656 CAAGCTAGGAAAGGGAGTAATCG 58.627 47.826 0.00 0.00 0.00 3.34
166 167 3.644335 AGCTAGGAAAGGGAGTAATCGT 58.356 45.455 0.00 0.00 0.00 3.73
167 168 3.385111 AGCTAGGAAAGGGAGTAATCGTG 59.615 47.826 0.00 0.00 0.00 4.35
168 169 2.693267 AGGAAAGGGAGTAATCGTGC 57.307 50.000 0.00 0.00 0.00 5.34
169 170 1.134788 AGGAAAGGGAGTAATCGTGCG 60.135 52.381 0.00 0.00 0.00 5.34
170 171 1.287425 GAAAGGGAGTAATCGTGCGG 58.713 55.000 0.00 0.00 0.00 5.69
171 172 0.899720 AAAGGGAGTAATCGTGCGGA 59.100 50.000 0.00 0.00 0.00 5.54
172 173 1.120530 AAGGGAGTAATCGTGCGGAT 58.879 50.000 0.00 0.00 36.78 4.18
173 174 0.674534 AGGGAGTAATCGTGCGGATC 59.325 55.000 0.00 0.00 33.02 3.36
174 175 0.674534 GGGAGTAATCGTGCGGATCT 59.325 55.000 0.00 0.00 33.02 2.75
175 176 1.884579 GGGAGTAATCGTGCGGATCTA 59.115 52.381 0.00 0.00 33.02 1.98
176 177 2.492484 GGGAGTAATCGTGCGGATCTAT 59.508 50.000 0.00 0.00 33.02 1.98
177 178 3.056749 GGGAGTAATCGTGCGGATCTATT 60.057 47.826 0.00 0.00 33.02 1.73
178 179 3.921021 GGAGTAATCGTGCGGATCTATTG 59.079 47.826 0.00 0.00 33.02 1.90
179 180 3.318017 AGTAATCGTGCGGATCTATTGC 58.682 45.455 0.00 0.00 33.02 3.56
180 181 2.533266 AATCGTGCGGATCTATTGCT 57.467 45.000 0.00 0.00 33.02 3.91
181 182 2.533266 ATCGTGCGGATCTATTGCTT 57.467 45.000 0.00 0.00 0.00 3.91
182 183 3.660501 ATCGTGCGGATCTATTGCTTA 57.339 42.857 0.00 0.00 0.00 3.09
183 184 3.446310 TCGTGCGGATCTATTGCTTAA 57.554 42.857 0.00 0.00 0.00 1.85
184 185 3.990092 TCGTGCGGATCTATTGCTTAAT 58.010 40.909 0.00 0.00 0.00 1.40
185 186 3.740832 TCGTGCGGATCTATTGCTTAATG 59.259 43.478 0.00 0.00 0.00 1.90
186 187 3.494626 CGTGCGGATCTATTGCTTAATGT 59.505 43.478 0.00 0.00 0.00 2.71
187 188 4.376413 CGTGCGGATCTATTGCTTAATGTC 60.376 45.833 0.00 0.00 0.00 3.06
188 189 4.065088 TGCGGATCTATTGCTTAATGTCC 58.935 43.478 0.00 0.00 0.00 4.02
189 190 4.910746 CGGATCTATTGCTTAATGTCCG 57.089 45.455 0.00 0.00 40.93 4.79
191 192 5.847670 GGATCTATTGCTTAATGTCCGAC 57.152 43.478 0.00 0.00 0.00 4.79
192 193 5.542779 GGATCTATTGCTTAATGTCCGACT 58.457 41.667 0.00 0.00 0.00 4.18
193 194 5.406780 GGATCTATTGCTTAATGTCCGACTG 59.593 44.000 0.00 0.00 0.00 3.51
194 195 5.592104 TCTATTGCTTAATGTCCGACTGA 57.408 39.130 0.00 0.00 0.00 3.41
195 196 6.161855 TCTATTGCTTAATGTCCGACTGAT 57.838 37.500 0.00 0.00 0.00 2.90
196 197 7.284919 TCTATTGCTTAATGTCCGACTGATA 57.715 36.000 0.00 0.00 0.00 2.15
197 198 7.371159 TCTATTGCTTAATGTCCGACTGATAG 58.629 38.462 0.00 0.00 0.00 2.08
198 199 4.322080 TGCTTAATGTCCGACTGATAGG 57.678 45.455 0.00 0.00 0.00 2.57
199 200 3.958147 TGCTTAATGTCCGACTGATAGGA 59.042 43.478 0.00 0.00 0.00 2.94
205 206 3.605743 GTCCGACTGATAGGACGTTAG 57.394 52.381 0.00 0.00 46.08 2.34
206 207 2.941720 GTCCGACTGATAGGACGTTAGT 59.058 50.000 0.00 0.00 46.08 2.24
207 208 3.002144 GTCCGACTGATAGGACGTTAGTC 59.998 52.174 0.00 0.00 46.08 2.59
261 262 2.363306 TTGGTGTTGCAGAGGTTGAT 57.637 45.000 0.00 0.00 0.00 2.57
263 264 0.883833 GGTGTTGCAGAGGTTGATGG 59.116 55.000 0.00 0.00 0.00 3.51
273 274 4.336713 GCAGAGGTTGATGGGTTTTCTATC 59.663 45.833 0.00 0.00 0.00 2.08
280 281 7.235399 AGGTTGATGGGTTTTCTATCAATGTTT 59.765 33.333 7.77 0.00 41.31 2.83
284 285 6.019779 TGGGTTTTCTATCAATGTTTTCCG 57.980 37.500 0.00 0.00 0.00 4.30
288 289 6.581166 GGTTTTCTATCAATGTTTTCCGTGTC 59.419 38.462 0.00 0.00 0.00 3.67
292 293 6.841119 TCTATCAATGTTTTCCGTGTCAATG 58.159 36.000 0.00 0.00 0.00 2.82
409 686 0.804989 CCGACCCAAGAAGAACATGC 59.195 55.000 0.00 0.00 0.00 4.06
456 862 2.315155 ACTCCCCACTAGTCACTACCAT 59.685 50.000 0.00 0.00 0.00 3.55
1382 1843 1.419387 GCTCTGCTATTCCATCCTGGT 59.581 52.381 0.00 0.00 39.03 4.00
1591 2078 7.094508 ACATCGTACATTTGCATTTGGATAA 57.905 32.000 0.00 0.00 0.00 1.75
1598 2085 6.996509 ACATTTGCATTTGGATAACTTCAGT 58.003 32.000 0.00 0.00 0.00 3.41
1609 2096 7.406031 TGGATAACTTCAGTCAGTAGTTAGG 57.594 40.000 0.00 0.00 41.46 2.69
1635 2125 7.761704 GTCATATGTATACATTCAGCCAGTAGG 59.238 40.741 22.90 4.46 37.76 3.18
1712 2214 5.364446 TGCCAGCCAAAATATGATCTTCATT 59.636 36.000 0.00 0.00 38.26 2.57
1713 2215 6.550481 TGCCAGCCAAAATATGATCTTCATTA 59.450 34.615 0.00 0.00 38.26 1.90
1714 2216 7.088905 GCCAGCCAAAATATGATCTTCATTAG 58.911 38.462 0.00 0.00 38.26 1.73
1715 2217 7.088905 CCAGCCAAAATATGATCTTCATTAGC 58.911 38.462 0.00 0.00 38.26 3.09
1716 2218 7.255695 CCAGCCAAAATATGATCTTCATTAGCA 60.256 37.037 0.00 0.00 38.26 3.49
1717 2219 8.304596 CAGCCAAAATATGATCTTCATTAGCAT 58.695 33.333 0.00 0.00 38.26 3.79
1718 2220 9.524496 AGCCAAAATATGATCTTCATTAGCATA 57.476 29.630 0.00 0.00 38.26 3.14
1805 2313 0.846693 ACTTGGCCTTGGAACTCACT 59.153 50.000 3.32 0.00 0.00 3.41
1849 2357 2.912956 AGAAGGTGCATAACTTCCTCCA 59.087 45.455 18.99 0.00 43.10 3.86
2007 2537 0.984995 GGGAGTCTACTGGCAAGGTT 59.015 55.000 0.00 0.00 0.00 3.50
2146 2676 1.219124 GAGAATGCTCGGGTGCTGA 59.781 57.895 0.00 0.00 0.00 4.26
2286 2816 2.768527 CAAGAGCATACTCAGGGAAGGA 59.231 50.000 0.00 0.00 46.09 3.36
2309 2839 1.619807 CGTCCGGTTTATGGGGTCCT 61.620 60.000 0.00 0.00 0.00 3.85
2600 3363 2.169832 TTGCTGCTCTTGTACCTGAC 57.830 50.000 0.00 0.00 0.00 3.51
2654 3871 4.082625 TGTTGAGCAGCAAATCAGTTATGG 60.083 41.667 0.00 0.00 38.44 2.74
2663 3884 5.300286 AGCAAATCAGTTATGGTAGCCATTC 59.700 40.000 5.94 1.29 42.23 2.67
2741 3962 3.118261 TGGCAGGTACAATCCTCTGAATC 60.118 47.826 0.00 0.00 35.37 2.52
2748 3970 3.973425 ACAATCCTCTGAATCCCTTTGG 58.027 45.455 0.00 0.00 0.00 3.28
2750 3972 4.044571 ACAATCCTCTGAATCCCTTTGGAA 59.955 41.667 0.00 0.00 45.98 3.53
2862 4249 5.164022 GCTGTTGCATTTTACATGAAGAAGC 60.164 40.000 0.00 0.00 39.41 3.86
2945 4335 3.742369 TCCGTTCCAAAATACTTGTCGTC 59.258 43.478 0.00 0.00 0.00 4.20
3003 4398 6.718294 AGTATTTTTGGAACGAAGGGAGTAT 58.282 36.000 0.00 0.00 0.00 2.12
3219 6632 7.554835 TCTTTGTATATATTTGCCCTTTCGTGT 59.445 33.333 0.00 0.00 0.00 4.49
3268 6683 1.668151 GCTTCGCTTTCCTCACGGT 60.668 57.895 0.00 0.00 0.00 4.83
3287 6702 2.350388 GGTTGATTAGTGGTGCACGTTG 60.350 50.000 11.45 0.00 39.64 4.10
3303 6718 4.032786 GCACGTTGTTCTTCTTGCATTTTT 59.967 37.500 0.00 0.00 0.00 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 9.747293 CTTCCCAATGCAAAAATTTAAAATGTT 57.253 25.926 0.00 0.00 0.00 2.71
1 2 9.129532 TCTTCCCAATGCAAAAATTTAAAATGT 57.870 25.926 0.00 0.00 0.00 2.71
6 7 9.571816 AAGATTCTTCCCAATGCAAAAATTTAA 57.428 25.926 0.00 0.00 0.00 1.52
7 8 9.571816 AAAGATTCTTCCCAATGCAAAAATTTA 57.428 25.926 0.00 0.00 0.00 1.40
9 10 7.720515 TCAAAGATTCTTCCCAATGCAAAAATT 59.279 29.630 0.00 0.00 0.00 1.82
10 11 7.225725 TCAAAGATTCTTCCCAATGCAAAAAT 58.774 30.769 0.00 0.00 0.00 1.82
11 12 6.590068 TCAAAGATTCTTCCCAATGCAAAAA 58.410 32.000 0.00 0.00 0.00 1.94
12 13 6.172136 TCAAAGATTCTTCCCAATGCAAAA 57.828 33.333 0.00 0.00 0.00 2.44
13 14 5.804944 TCAAAGATTCTTCCCAATGCAAA 57.195 34.783 0.00 0.00 0.00 3.68
14 15 5.481122 TCATCAAAGATTCTTCCCAATGCAA 59.519 36.000 0.00 0.00 0.00 4.08
15 16 5.018149 TCATCAAAGATTCTTCCCAATGCA 58.982 37.500 0.00 0.00 0.00 3.96
16 17 5.105635 TGTCATCAAAGATTCTTCCCAATGC 60.106 40.000 0.00 0.79 0.00 3.56
17 18 6.519679 TGTCATCAAAGATTCTTCCCAATG 57.480 37.500 0.00 2.51 0.00 2.82
18 19 6.893554 TGATGTCATCAAAGATTCTTCCCAAT 59.106 34.615 13.25 0.00 36.11 3.16
19 20 6.247676 TGATGTCATCAAAGATTCTTCCCAA 58.752 36.000 13.25 0.00 36.11 4.12
20 21 5.818887 TGATGTCATCAAAGATTCTTCCCA 58.181 37.500 13.25 0.00 36.11 4.37
21 22 6.956202 ATGATGTCATCAAAGATTCTTCCC 57.044 37.500 19.17 0.00 43.50 3.97
54 55 7.546778 TGCTAATCGTATACATGCAGAAAAA 57.453 32.000 3.32 0.00 0.00 1.94
55 56 7.279981 AGTTGCTAATCGTATACATGCAGAAAA 59.720 33.333 3.32 0.00 0.00 2.29
56 57 6.761242 AGTTGCTAATCGTATACATGCAGAAA 59.239 34.615 3.32 0.00 0.00 2.52
57 58 6.200854 CAGTTGCTAATCGTATACATGCAGAA 59.799 38.462 3.32 0.00 0.00 3.02
58 59 5.691754 CAGTTGCTAATCGTATACATGCAGA 59.308 40.000 3.32 0.00 0.00 4.26
59 60 5.613360 GCAGTTGCTAATCGTATACATGCAG 60.613 44.000 3.32 0.00 38.21 4.41
60 61 4.211164 GCAGTTGCTAATCGTATACATGCA 59.789 41.667 3.32 0.00 38.21 3.96
61 62 4.702392 GCAGTTGCTAATCGTATACATGC 58.298 43.478 3.32 0.32 38.21 4.06
76 77 5.447818 CCACTAGCAGTTAATTAGCAGTTGC 60.448 44.000 1.97 3.40 42.49 4.17
77 78 5.874810 TCCACTAGCAGTTAATTAGCAGTTG 59.125 40.000 1.97 0.00 0.00 3.16
78 79 6.049955 TCCACTAGCAGTTAATTAGCAGTT 57.950 37.500 1.97 0.00 0.00 3.16
79 80 5.187967 ACTCCACTAGCAGTTAATTAGCAGT 59.812 40.000 1.97 0.00 0.00 4.40
80 81 5.521735 CACTCCACTAGCAGTTAATTAGCAG 59.478 44.000 1.97 0.00 0.00 4.24
81 82 5.419542 CACTCCACTAGCAGTTAATTAGCA 58.580 41.667 1.97 0.00 0.00 3.49
82 83 4.811557 CCACTCCACTAGCAGTTAATTAGC 59.188 45.833 0.00 0.00 0.00 3.09
83 84 6.043411 GTCCACTCCACTAGCAGTTAATTAG 58.957 44.000 0.00 0.00 0.00 1.73
84 85 5.482526 TGTCCACTCCACTAGCAGTTAATTA 59.517 40.000 0.00 0.00 0.00 1.40
85 86 4.286032 TGTCCACTCCACTAGCAGTTAATT 59.714 41.667 0.00 0.00 0.00 1.40
86 87 3.838317 TGTCCACTCCACTAGCAGTTAAT 59.162 43.478 0.00 0.00 0.00 1.40
87 88 3.006537 GTGTCCACTCCACTAGCAGTTAA 59.993 47.826 0.00 0.00 0.00 2.01
88 89 2.561419 GTGTCCACTCCACTAGCAGTTA 59.439 50.000 0.00 0.00 0.00 2.24
89 90 1.344763 GTGTCCACTCCACTAGCAGTT 59.655 52.381 0.00 0.00 0.00 3.16
90 91 0.969894 GTGTCCACTCCACTAGCAGT 59.030 55.000 0.00 0.00 0.00 4.40
91 92 0.109086 CGTGTCCACTCCACTAGCAG 60.109 60.000 0.00 0.00 0.00 4.24
92 93 1.964448 CGTGTCCACTCCACTAGCA 59.036 57.895 0.00 0.00 0.00 3.49
93 94 1.446272 GCGTGTCCACTCCACTAGC 60.446 63.158 0.00 0.00 0.00 3.42
94 95 0.388649 GTGCGTGTCCACTCCACTAG 60.389 60.000 9.45 0.00 32.33 2.57
95 96 1.110518 TGTGCGTGTCCACTCCACTA 61.111 55.000 14.72 4.30 36.68 2.74
96 97 2.369257 CTGTGCGTGTCCACTCCACT 62.369 60.000 14.72 0.00 36.68 4.00
97 98 1.956170 CTGTGCGTGTCCACTCCAC 60.956 63.158 9.67 9.67 36.68 4.02
98 99 1.681486 TTCTGTGCGTGTCCACTCCA 61.681 55.000 0.00 0.00 36.68 3.86
99 100 0.531974 TTTCTGTGCGTGTCCACTCC 60.532 55.000 0.00 0.00 36.68 3.85
100 101 1.295792 TTTTCTGTGCGTGTCCACTC 58.704 50.000 0.00 0.00 36.68 3.51
101 102 1.745232 TTTTTCTGTGCGTGTCCACT 58.255 45.000 0.00 0.00 36.68 4.00
117 118 8.365399 CATGCATGCATCTTCATCTTATTTTT 57.635 30.769 30.07 1.00 33.90 1.94
118 119 7.946655 CATGCATGCATCTTCATCTTATTTT 57.053 32.000 30.07 1.43 33.90 1.82
135 136 2.223735 CCTTTCCTAGCTTGCATGCATG 60.224 50.000 23.37 24.36 34.99 4.06
136 137 2.029623 CCTTTCCTAGCTTGCATGCAT 58.970 47.619 23.37 9.62 34.99 3.96
137 138 1.466856 CCTTTCCTAGCTTGCATGCA 58.533 50.000 24.65 18.46 34.99 3.96
138 139 0.743097 CCCTTTCCTAGCTTGCATGC 59.257 55.000 16.37 16.37 0.00 4.06
139 140 2.295885 CTCCCTTTCCTAGCTTGCATG 58.704 52.381 0.00 0.00 0.00 4.06
140 141 1.918957 ACTCCCTTTCCTAGCTTGCAT 59.081 47.619 0.00 0.00 0.00 3.96
141 142 1.362224 ACTCCCTTTCCTAGCTTGCA 58.638 50.000 0.00 0.00 0.00 4.08
142 143 3.629142 TTACTCCCTTTCCTAGCTTGC 57.371 47.619 0.00 0.00 0.00 4.01
143 144 4.141914 ACGATTACTCCCTTTCCTAGCTTG 60.142 45.833 0.00 0.00 0.00 4.01
144 145 4.031611 ACGATTACTCCCTTTCCTAGCTT 58.968 43.478 0.00 0.00 0.00 3.74
145 146 3.385111 CACGATTACTCCCTTTCCTAGCT 59.615 47.826 0.00 0.00 0.00 3.32
146 147 3.718815 CACGATTACTCCCTTTCCTAGC 58.281 50.000 0.00 0.00 0.00 3.42
147 148 3.718815 GCACGATTACTCCCTTTCCTAG 58.281 50.000 0.00 0.00 0.00 3.02
148 149 2.100252 CGCACGATTACTCCCTTTCCTA 59.900 50.000 0.00 0.00 0.00 2.94
149 150 1.134788 CGCACGATTACTCCCTTTCCT 60.135 52.381 0.00 0.00 0.00 3.36
150 151 1.287425 CGCACGATTACTCCCTTTCC 58.713 55.000 0.00 0.00 0.00 3.13
151 152 1.134907 TCCGCACGATTACTCCCTTTC 60.135 52.381 0.00 0.00 0.00 2.62
152 153 0.899720 TCCGCACGATTACTCCCTTT 59.100 50.000 0.00 0.00 0.00 3.11
153 154 1.068741 GATCCGCACGATTACTCCCTT 59.931 52.381 0.00 0.00 0.00 3.95
154 155 0.674534 GATCCGCACGATTACTCCCT 59.325 55.000 0.00 0.00 0.00 4.20
155 156 0.674534 AGATCCGCACGATTACTCCC 59.325 55.000 0.00 0.00 0.00 4.30
156 157 3.851976 ATAGATCCGCACGATTACTCC 57.148 47.619 0.00 0.00 0.00 3.85
157 158 3.365220 GCAATAGATCCGCACGATTACTC 59.635 47.826 0.00 0.00 0.00 2.59
158 159 3.005897 AGCAATAGATCCGCACGATTACT 59.994 43.478 0.00 0.00 0.00 2.24
159 160 3.318017 AGCAATAGATCCGCACGATTAC 58.682 45.455 0.00 0.00 0.00 1.89
160 161 3.660501 AGCAATAGATCCGCACGATTA 57.339 42.857 0.00 0.00 0.00 1.75
161 162 2.533266 AGCAATAGATCCGCACGATT 57.467 45.000 0.00 0.00 0.00 3.34
162 163 2.533266 AAGCAATAGATCCGCACGAT 57.467 45.000 0.00 0.00 0.00 3.73
163 164 3.446310 TTAAGCAATAGATCCGCACGA 57.554 42.857 0.00 0.00 0.00 4.35
164 165 3.494626 ACATTAAGCAATAGATCCGCACG 59.505 43.478 0.00 0.00 0.00 5.34
165 166 4.083802 GGACATTAAGCAATAGATCCGCAC 60.084 45.833 0.00 0.00 0.00 5.34
166 167 4.065088 GGACATTAAGCAATAGATCCGCA 58.935 43.478 0.00 0.00 0.00 5.69
167 168 3.123621 CGGACATTAAGCAATAGATCCGC 59.876 47.826 0.00 0.00 41.13 5.54
168 169 4.910746 CGGACATTAAGCAATAGATCCG 57.089 45.455 0.00 0.00 41.58 4.18
169 170 5.406780 CAGTCGGACATTAAGCAATAGATCC 59.593 44.000 11.27 0.00 0.00 3.36
170 171 6.216569 TCAGTCGGACATTAAGCAATAGATC 58.783 40.000 11.27 0.00 0.00 2.75
171 172 6.161855 TCAGTCGGACATTAAGCAATAGAT 57.838 37.500 11.27 0.00 0.00 1.98
172 173 5.592104 TCAGTCGGACATTAAGCAATAGA 57.408 39.130 11.27 0.00 0.00 1.98
173 174 6.587990 CCTATCAGTCGGACATTAAGCAATAG 59.412 42.308 11.27 5.40 0.00 1.73
174 175 6.266786 TCCTATCAGTCGGACATTAAGCAATA 59.733 38.462 11.27 0.00 0.00 1.90
175 176 5.070446 TCCTATCAGTCGGACATTAAGCAAT 59.930 40.000 11.27 0.00 0.00 3.56
176 177 4.404394 TCCTATCAGTCGGACATTAAGCAA 59.596 41.667 11.27 0.00 0.00 3.91
177 178 3.958147 TCCTATCAGTCGGACATTAAGCA 59.042 43.478 11.27 0.00 0.00 3.91
178 179 4.299978 GTCCTATCAGTCGGACATTAAGC 58.700 47.826 11.27 0.00 46.98 3.09
185 186 2.941720 ACTAACGTCCTATCAGTCGGAC 59.058 50.000 0.00 0.00 44.88 4.79
186 187 3.201290 GACTAACGTCCTATCAGTCGGA 58.799 50.000 0.00 0.00 33.98 4.55
187 188 3.605743 GACTAACGTCCTATCAGTCGG 57.394 52.381 0.00 0.00 33.98 4.79
189 190 2.599377 CGCGACTAACGTCCTATCAGTC 60.599 54.545 0.00 0.00 44.60 3.51
190 191 1.329906 CGCGACTAACGTCCTATCAGT 59.670 52.381 0.00 0.00 44.60 3.41
191 192 1.329906 ACGCGACTAACGTCCTATCAG 59.670 52.381 15.93 0.00 40.28 2.90
192 193 1.372582 ACGCGACTAACGTCCTATCA 58.627 50.000 15.93 0.00 40.28 2.15
200 201 9.495929 GAATAAATTTTATAGACGCGACTAACG 57.504 33.333 21.28 0.00 45.66 3.18
203 204 9.955208 TGAGAATAAATTTTATAGACGCGACTA 57.045 29.630 19.88 19.88 0.00 2.59
204 205 8.867112 TGAGAATAAATTTTATAGACGCGACT 57.133 30.769 15.93 16.24 0.00 4.18
231 232 5.549347 TCTGCAACACCAAATAAATGCAAT 58.451 33.333 0.00 0.00 42.53 3.56
235 236 5.138125 ACCTCTGCAACACCAAATAAATG 57.862 39.130 0.00 0.00 0.00 2.32
261 262 5.536916 ACGGAAAACATTGATAGAAAACCCA 59.463 36.000 0.00 0.00 0.00 4.51
263 264 6.443792 ACACGGAAAACATTGATAGAAAACC 58.556 36.000 0.00 0.00 0.00 3.27
273 274 7.636259 AAATACATTGACACGGAAAACATTG 57.364 32.000 0.00 0.00 0.00 2.82
321 322 6.206634 GCCCCATCTATTTCAAAATACATCGA 59.793 38.462 0.00 0.00 0.00 3.59
323 324 7.014615 AGTGCCCCATCTATTTCAAAATACATC 59.985 37.037 0.00 0.00 0.00 3.06
392 668 1.177401 GGGCATGTTCTTCTTGGGTC 58.823 55.000 0.00 0.00 0.00 4.46
409 686 2.043953 GCCTGCTTAGGGTTGGGG 60.044 66.667 0.00 0.00 0.00 4.96
466 872 4.373116 GGCGAACTGGCGAGTGGA 62.373 66.667 0.71 0.00 30.61 4.02
477 889 3.407967 TCCCTGGGATGGGCGAAC 61.408 66.667 12.53 0.00 46.67 3.95
601 1013 3.866582 CCGACCCCCAGCATCTCC 61.867 72.222 0.00 0.00 0.00 3.71
977 1417 3.697747 TGCGGGTTAGGTGGACGG 61.698 66.667 0.00 0.00 0.00 4.79
1382 1843 0.400213 GTCCACCACCAAGATGTCCA 59.600 55.000 0.00 0.00 0.00 4.02
1532 2019 0.244721 GGTGTTGCCAATCTCCAAGC 59.755 55.000 0.00 0.00 37.17 4.01
1591 2078 7.616150 ACATATGACCTAACTACTGACTGAAGT 59.384 37.037 10.38 0.00 0.00 3.01
1609 2096 7.761704 CCTACTGGCTGAATGTATACATATGAC 59.238 40.741 18.56 13.55 35.10 3.06
1658 2148 9.162764 GTTGTTATTGACAGGACAACAGTATAT 57.837 33.333 18.22 0.00 46.72 0.86
1660 2150 7.435068 GTTGTTATTGACAGGACAACAGTAT 57.565 36.000 18.22 0.00 46.72 2.12
1662 2152 5.751243 GTTGTTATTGACAGGACAACAGT 57.249 39.130 18.22 0.00 46.72 3.55
1665 2155 4.806342 ACGTTGTTATTGACAGGACAAC 57.194 40.909 15.30 15.30 45.04 3.32
1666 2156 5.106869 GCATACGTTGTTATTGACAGGACAA 60.107 40.000 0.00 0.00 39.94 3.18
1667 2157 4.390603 GCATACGTTGTTATTGACAGGACA 59.609 41.667 0.00 0.00 39.94 4.02
1668 2158 4.201783 GGCATACGTTGTTATTGACAGGAC 60.202 45.833 0.00 0.00 39.94 3.85
1669 2159 3.936453 GGCATACGTTGTTATTGACAGGA 59.064 43.478 0.00 0.00 39.94 3.86
1670 2160 3.687212 TGGCATACGTTGTTATTGACAGG 59.313 43.478 0.00 0.00 39.94 4.00
1671 2161 4.727734 GCTGGCATACGTTGTTATTGACAG 60.728 45.833 0.00 1.56 39.94 3.51
1712 2214 6.736519 GCAATGCAAATGTGGAAGATATGCTA 60.737 38.462 0.00 0.00 33.66 3.49
1713 2215 5.597806 CAATGCAAATGTGGAAGATATGCT 58.402 37.500 0.00 0.00 33.66 3.79
1714 2216 4.210537 GCAATGCAAATGTGGAAGATATGC 59.789 41.667 0.00 0.00 0.00 3.14
1715 2217 5.353111 TGCAATGCAAATGTGGAAGATATG 58.647 37.500 5.01 0.00 34.76 1.78
1716 2218 5.452776 CCTGCAATGCAAATGTGGAAGATAT 60.453 40.000 9.92 0.00 38.41 1.63
1717 2219 4.142116 CCTGCAATGCAAATGTGGAAGATA 60.142 41.667 9.92 0.00 38.41 1.98
1718 2220 3.369052 CCTGCAATGCAAATGTGGAAGAT 60.369 43.478 9.92 0.00 38.41 2.40
1719 2221 2.028839 CCTGCAATGCAAATGTGGAAGA 60.029 45.455 9.92 0.00 38.41 2.87
1805 2313 1.202879 AGGTCATTGCGGACTTGGAAA 60.203 47.619 3.47 0.00 37.91 3.13
1849 2357 2.546789 GTCTCGACGTTGGGAAAACATT 59.453 45.455 7.03 0.00 0.00 2.71
1966 2496 1.021390 CGAGCCTTTTCGGACTGCAT 61.021 55.000 0.00 0.00 36.95 3.96
2007 2537 1.140052 TCGAGCCAAAACTTGAGACCA 59.860 47.619 0.00 0.00 0.00 4.02
2146 2676 5.588648 CGGACACCACAATAACCATATTCTT 59.411 40.000 0.00 0.00 29.08 2.52
2286 2816 1.520666 CCCATAAACCGGACGCTCT 59.479 57.895 9.46 0.00 0.00 4.09
2309 2839 3.326588 TGGCAAAACCTCAGAAGCTAGTA 59.673 43.478 0.00 0.00 40.22 1.82
2600 3363 9.253832 AGAATGACCATACTAGATAATCAGGAG 57.746 37.037 0.00 0.00 0.00 3.69
2654 3871 4.846779 TCAAACCAACTTGAATGGCTAC 57.153 40.909 0.00 0.00 41.89 3.58
2663 3884 3.631686 TGTCCACAGATCAAACCAACTTG 59.368 43.478 0.00 0.00 0.00 3.16
2748 3970 6.097412 AGGCCTTGTATGAAATTGGAGAATTC 59.903 38.462 0.00 0.00 30.02 2.17
2750 3972 5.522641 AGGCCTTGTATGAAATTGGAGAAT 58.477 37.500 0.00 0.00 0.00 2.40
2862 4249 7.070074 ACCTCACTGGAATACAATAACTCCTAG 59.930 40.741 0.00 0.00 39.71 3.02
2972 4366 2.977169 CGTTCCAAAAATACTTGCCGTG 59.023 45.455 0.00 0.00 0.00 4.94
2976 4370 4.022676 TCCCTTCGTTCCAAAAATACTTGC 60.023 41.667 0.00 0.00 0.00 4.01
3003 4398 1.333931 CACGCGAGCCTAGATAACTGA 59.666 52.381 15.93 0.00 0.00 3.41
3201 6614 7.633193 AATAACACACGAAAGGGCAAATATA 57.367 32.000 0.00 0.00 38.93 0.86
3215 6628 7.302524 AGTAGCAAATTACCAAATAACACACG 58.697 34.615 0.00 0.00 0.00 4.49
3219 6632 7.820386 TCTCGAGTAGCAAATTACCAAATAACA 59.180 33.333 13.13 0.00 0.00 2.41
3268 6683 2.566913 ACAACGTGCACCACTAATCAA 58.433 42.857 12.15 0.00 31.34 2.57
3303 6718 5.597806 ACAGATGTTCGTTTACACAGAGAA 58.402 37.500 0.00 0.00 0.00 2.87


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.