Multiple sequence alignment - TraesCS5D01G480200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G480200 chr5D 100.000 4477 0 0 1 4477 517839384 517843860 0.000000e+00 8268.0
1 TraesCS5D01G480200 chr5D 90.132 152 13 2 1090 1240 238712734 238712584 3.530000e-46 196.0
2 TraesCS5D01G480200 chr5D 88.550 131 15 0 2388 2518 238711624 238711494 4.640000e-35 159.0
3 TraesCS5D01G480200 chr5D 100.000 53 0 0 3359 3411 517842698 517842750 1.020000e-16 99.0
4 TraesCS5D01G480200 chr5D 100.000 53 0 0 3315 3367 517842742 517842794 1.020000e-16 99.0
5 TraesCS5D01G480200 chr5D 96.078 51 1 1 2017 2066 517841337 517841387 1.030000e-11 82.4
6 TraesCS5D01G480200 chr5D 96.078 51 1 1 1954 2004 517841400 517841449 1.030000e-11 82.4
7 TraesCS5D01G480200 chr5B 92.792 1526 79 17 93 1598 650545192 650546706 0.000000e+00 2180.0
8 TraesCS5D01G480200 chr5B 97.076 684 18 2 2235 2916 650547554 650548237 0.000000e+00 1151.0
9 TraesCS5D01G480200 chr5B 89.744 546 22 17 3364 3888 650548390 650548922 0.000000e+00 667.0
10 TraesCS5D01G480200 chr5B 94.118 425 24 1 1581 2004 650546718 650547142 0.000000e+00 645.0
11 TraesCS5D01G480200 chr5B 94.649 299 7 3 2017 2313 650547092 650547383 5.280000e-124 455.0
12 TraesCS5D01G480200 chr5B 84.900 351 14 9 3997 4315 650548948 650549291 7.230000e-83 318.0
13 TraesCS5D01G480200 chr5B 90.503 179 8 6 3187 3363 650548259 650548430 1.250000e-55 228.0
14 TraesCS5D01G480200 chr5B 88.976 127 14 0 2389 2515 266005268 266005394 1.670000e-34 158.0
15 TraesCS5D01G480200 chr5B 93.182 88 6 0 1 88 650545056 650545143 3.630000e-26 130.0
16 TraesCS5D01G480200 chr5B 86.517 89 3 1 2235 2314 650547385 650547473 6.170000e-14 89.8
17 TraesCS5D01G480200 chr5A 95.401 1196 44 7 815 2004 645260804 645261994 0.000000e+00 1893.0
18 TraesCS5D01G480200 chr5A 96.012 677 22 3 2235 2907 645262316 645262991 0.000000e+00 1096.0
19 TraesCS5D01G480200 chr5A 87.709 838 42 23 3359 4181 645263161 645263952 0.000000e+00 920.0
20 TraesCS5D01G480200 chr5A 92.710 535 18 9 302 817 645259834 645260366 0.000000e+00 752.0
21 TraesCS5D01G480200 chr5A 92.542 295 15 1 2020 2314 645261948 645262235 2.490000e-112 416.0
22 TraesCS5D01G480200 chr5A 94.340 159 6 1 3184 3339 645263027 645263185 1.610000e-59 241.0
23 TraesCS5D01G480200 chr5A 98.507 134 2 0 4325 4458 645264236 645264369 2.080000e-58 237.0
24 TraesCS5D01G480200 chr5A 91.837 147 5 1 4184 4330 645263986 645264125 9.820000e-47 198.0
25 TraesCS5D01G480200 chr5A 86.826 167 16 2 103 263 645259671 645259837 9.890000e-42 182.0
26 TraesCS5D01G480200 chr5A 89.062 128 14 0 2388 2515 315495850 315495977 4.640000e-35 159.0
27 TraesCS5D01G480200 chr5A 92.500 80 6 0 2235 2314 645262236 645262315 1.020000e-21 115.0
28 TraesCS5D01G480200 chr4D 95.094 265 11 1 2916 3178 24775851 24775587 2.490000e-112 416.0
29 TraesCS5D01G480200 chr2D 97.166 247 6 1 2912 3158 541547286 541547531 2.490000e-112 416.0
30 TraesCS5D01G480200 chr2D 92.254 142 11 0 2380 2521 277680323 277680464 7.590000e-48 202.0
31 TraesCS5D01G480200 chr2B 97.131 244 7 0 2915 3158 135101661 135101418 3.220000e-111 412.0
32 TraesCS5D01G480200 chr1D 96.761 247 8 0 2916 3162 448103137 448103383 3.220000e-111 412.0
33 TraesCS5D01G480200 chr1D 90.854 164 15 0 1081 1244 403238768 403238605 2.100000e-53 220.0
34 TraesCS5D01G480200 chr4A 97.119 243 7 0 2916 3158 615435032 615435274 1.160000e-110 411.0
35 TraesCS5D01G480200 chr4A 93.962 265 15 1 2897 3161 360642765 360642502 2.510000e-107 399.0
36 TraesCS5D01G480200 chr7D 95.331 257 11 1 2902 3158 369463541 369463286 1.500000e-109 407.0
37 TraesCS5D01G480200 chr7D 89.796 98 9 1 4370 4466 543626237 543626140 1.690000e-24 124.0
38 TraesCS5D01G480200 chr7D 87.879 99 11 1 4370 4467 543562736 543562638 1.020000e-21 115.0
39 TraesCS5D01G480200 chr7D 87.755 98 11 1 4370 4466 543609801 543609704 3.660000e-21 113.0
40 TraesCS5D01G480200 chr3A 96.721 244 7 1 2916 3158 493129924 493129681 5.390000e-109 405.0
41 TraesCS5D01G480200 chr3A 92.073 164 13 0 1081 1244 584276534 584276697 9.680000e-57 231.0
42 TraesCS5D01G480200 chr6D 94.297 263 12 3 2898 3160 438515165 438515424 2.510000e-107 399.0
43 TraesCS5D01G480200 chr3D 92.073 164 13 0 1081 1244 443258969 443259132 9.680000e-57 231.0
44 TraesCS5D01G480200 chr3B 91.463 164 14 0 1081 1244 581026438 581026601 4.510000e-55 226.0
45 TraesCS5D01G480200 chr3B 91.473 129 11 0 2389 2517 581029962 581030090 1.280000e-40 178.0
46 TraesCS5D01G480200 chr1B 90.854 164 15 0 1081 1244 541469864 541469701 2.100000e-53 220.0
47 TraesCS5D01G480200 chr1A 90.854 164 15 0 1081 1244 498454134 498453971 2.100000e-53 220.0
48 TraesCS5D01G480200 chr2A 92.806 139 10 0 2383 2521 293936397 293936259 7.590000e-48 202.0
49 TraesCS5D01G480200 chr7B 91.837 98 7 1 4370 4466 586967933 586967836 7.810000e-28 135.0
50 TraesCS5D01G480200 chr7A 90.816 98 8 1 4370 4466 625534333 625534236 3.630000e-26 130.0
51 TraesCS5D01G480200 chr7A 90.816 98 8 1 4370 4466 625603040 625602943 3.630000e-26 130.0
52 TraesCS5D01G480200 chr7A 89.796 98 9 1 4370 4466 625538865 625538768 1.690000e-24 124.0
53 TraesCS5D01G480200 chr7A 88.776 98 10 1 4370 4466 617737640 617737543 7.870000e-23 119.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G480200 chr5D 517839384 517843860 4476 False 1726.160000 8268 98.431200 1 4477 5 chr5D.!!$F1 4476
1 TraesCS5D01G480200 chr5B 650545056 650549291 4235 False 651.533333 2180 91.497889 1 4315 9 chr5B.!!$F2 4314
2 TraesCS5D01G480200 chr5A 645259671 645264369 4698 False 605.000000 1893 92.838400 103 4458 10 chr5A.!!$F2 4355
3 TraesCS5D01G480200 chr3B 581026438 581030090 3652 False 202.000000 226 91.468000 1081 2517 2 chr3B.!!$F1 1436

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
136 187 0.580104 AACGAAGGAAGCGAAACACG 59.420 50.000 0.00 0.0 45.66 4.49 F
266 318 0.807496 GTCAGCATTTCCTGTGAGCC 59.193 55.000 0.00 0.0 34.47 4.70 F
1086 1604 2.439883 ACCTACGCGGGAGGAGAC 60.440 66.667 29.59 0.0 37.53 3.36 F
2753 5989 0.323302 TAACCATGCGCAGACTTCCA 59.677 50.000 18.32 0.0 0.00 3.53 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1209 1727 0.105039 GGATGGTGGTGACGATCTCC 59.895 60.0 0.00 0.0 37.45 3.71 R
1335 1853 0.174162 GGGATCACATTGCCAAGCAC 59.826 55.0 0.00 0.0 38.71 4.40 R
3046 6285 0.027586 GTCAAGCGCTCAACACGTTT 59.972 50.0 12.06 0.0 34.13 3.60 R
3906 7165 0.250513 GGACCTTCTCGTCTTGCCAT 59.749 55.0 0.00 0.0 33.07 4.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 3.571401 GGCAAGTCCTATAGCATTTGCAT 59.429 43.478 21.34 0.00 45.16 3.96
30 31 4.543692 GCAAGTCCTATAGCATTTGCATG 58.456 43.478 16.62 0.00 45.16 4.06
88 89 1.276622 GCTTGTGGAAGGAGACCCTA 58.723 55.000 0.00 0.00 43.48 3.53
90 91 2.239907 GCTTGTGGAAGGAGACCCTATT 59.760 50.000 0.00 0.00 43.48 1.73
96 141 1.964933 GAAGGAGACCCTATTCCCGAG 59.035 57.143 0.00 0.00 43.48 4.63
99 144 1.133419 GGAGACCCTATTCCCGAGAGT 60.133 57.143 0.00 0.00 0.00 3.24
127 172 1.537202 CCAAGGCAAGAACGAAGGAAG 59.463 52.381 0.00 0.00 0.00 3.46
136 187 0.580104 AACGAAGGAAGCGAAACACG 59.420 50.000 0.00 0.00 45.66 4.49
142 193 1.161563 GGAAGCGAAACACGTTGGGA 61.162 55.000 0.00 0.00 44.60 4.37
152 203 2.280524 CGTTGGGAAGTGGCGACA 60.281 61.111 0.45 0.00 38.70 4.35
198 250 1.245732 CTAATACGGGCTCGCCTAGT 58.754 55.000 5.51 10.69 40.63 2.57
247 299 2.105128 GTCGCGATGGACCAGGAG 59.895 66.667 14.06 0.00 0.00 3.69
263 315 1.980765 AGGAGTCAGCATTTCCTGTGA 59.019 47.619 0.00 0.00 39.80 3.58
266 318 0.807496 GTCAGCATTTCCTGTGAGCC 59.193 55.000 0.00 0.00 34.47 4.70
315 373 4.809426 ACGGTACTTTGTGTCTTTCTGAAG 59.191 41.667 0.00 0.00 0.00 3.02
435 497 3.139077 GGAAAAGAAAAGGTGAGCGAGA 58.861 45.455 0.00 0.00 0.00 4.04
439 509 6.072673 GGAAAAGAAAAGGTGAGCGAGAATTA 60.073 38.462 0.00 0.00 0.00 1.40
444 514 7.886338 AGAAAAGGTGAGCGAGAATTATTTTT 58.114 30.769 0.00 0.00 0.00 1.94
786 864 2.799371 GCGAGATCCGTCCGTTCT 59.201 61.111 5.66 0.00 41.15 3.01
854 1372 4.873810 TCCATGGCCATTCCCGCG 62.874 66.667 17.92 3.10 0.00 6.46
1086 1604 2.439883 ACCTACGCGGGAGGAGAC 60.440 66.667 29.59 0.00 37.53 3.36
1288 1806 5.853282 GTGATGCGTGCCTATTTATTCATTC 59.147 40.000 0.00 0.00 0.00 2.67
1289 1807 4.466567 TGCGTGCCTATTTATTCATTCG 57.533 40.909 0.00 0.00 0.00 3.34
1290 1808 3.874543 TGCGTGCCTATTTATTCATTCGT 59.125 39.130 0.00 0.00 0.00 3.85
1299 1817 7.855904 GCCTATTTATTCATTCGTACCAAGTTG 59.144 37.037 0.00 0.00 0.00 3.16
1307 1825 5.703592 TCATTCGTACCAAGTTGTTGCTTAT 59.296 36.000 1.45 0.00 31.64 1.73
1335 1853 1.725641 TCTGTAGCGGAACATGCAAG 58.274 50.000 0.00 0.00 33.85 4.01
1481 2331 9.178758 AGGTAGTTTTTGTTCATTAGGATCATC 57.821 33.333 0.00 0.00 0.00 2.92
1707 2589 8.271458 TGCCAATAGGAAGTCATTGATAGTAAA 58.729 33.333 0.00 0.00 34.69 2.01
1804 2688 2.474410 AAGCCACTACAACCAGCTAC 57.526 50.000 0.00 0.00 32.39 3.58
1871 2755 3.398406 TGTAAATCGACTGCTTGCTTCA 58.602 40.909 0.00 0.00 0.00 3.02
1922 2806 7.817478 CCAGTATAATATCCTCGTGTGCATTTA 59.183 37.037 0.00 0.00 0.00 1.40
1998 2882 8.701908 TTATACTATAGGTCAGATTTGGACGT 57.298 34.615 4.43 0.00 36.12 4.34
1999 2883 5.934402 ACTATAGGTCAGATTTGGACGTT 57.066 39.130 4.43 0.00 36.12 3.99
2000 2884 6.295719 ACTATAGGTCAGATTTGGACGTTT 57.704 37.500 4.43 0.00 36.12 3.60
2003 2887 3.551846 AGGTCAGATTTGGACGTTTGTT 58.448 40.909 0.00 0.00 36.12 2.83
2004 2888 3.564225 AGGTCAGATTTGGACGTTTGTTC 59.436 43.478 0.00 0.00 36.12 3.18
2005 2889 3.314080 GGTCAGATTTGGACGTTTGTTCA 59.686 43.478 0.00 0.00 36.12 3.18
2006 2890 4.023193 GGTCAGATTTGGACGTTTGTTCAT 60.023 41.667 0.00 0.00 32.29 2.57
2007 2891 4.911610 GTCAGATTTGGACGTTTGTTCATG 59.088 41.667 0.00 0.00 32.29 3.07
2008 2892 4.578516 TCAGATTTGGACGTTTGTTCATGT 59.421 37.500 0.00 0.00 32.29 3.21
2009 2893 5.067153 TCAGATTTGGACGTTTGTTCATGTT 59.933 36.000 0.00 0.00 32.29 2.71
2010 2894 5.399301 CAGATTTGGACGTTTGTTCATGTTC 59.601 40.000 0.00 0.00 32.29 3.18
2011 2895 4.974368 TTTGGACGTTTGTTCATGTTCT 57.026 36.364 0.00 0.00 32.29 3.01
2012 2896 4.545823 TTGGACGTTTGTTCATGTTCTC 57.454 40.909 0.00 0.00 32.29 2.87
2013 2897 3.804036 TGGACGTTTGTTCATGTTCTCT 58.196 40.909 0.00 0.00 0.00 3.10
2014 2898 3.807622 TGGACGTTTGTTCATGTTCTCTC 59.192 43.478 0.00 0.00 0.00 3.20
2016 2900 2.800544 ACGTTTGTTCATGTTCTCTCCG 59.199 45.455 0.00 0.00 0.00 4.63
2020 2904 5.578776 GTTTGTTCATGTTCTCTCCGTTTT 58.421 37.500 0.00 0.00 0.00 2.43
2021 2905 5.828299 TTGTTCATGTTCTCTCCGTTTTT 57.172 34.783 0.00 0.00 0.00 1.94
2022 2906 5.418310 TGTTCATGTTCTCTCCGTTTTTC 57.582 39.130 0.00 0.00 0.00 2.29
2023 2907 4.878971 TGTTCATGTTCTCTCCGTTTTTCA 59.121 37.500 0.00 0.00 0.00 2.69
2024 2908 5.530915 TGTTCATGTTCTCTCCGTTTTTCAT 59.469 36.000 0.00 0.00 0.00 2.57
2028 5012 3.629855 TGTTCTCTCCGTTTTTCATGCAA 59.370 39.130 0.00 0.00 0.00 4.08
2029 5013 4.097135 TGTTCTCTCCGTTTTTCATGCAAA 59.903 37.500 0.00 0.00 0.00 3.68
2032 5016 6.567687 TCTCTCCGTTTTTCATGCAAATTA 57.432 33.333 0.00 0.00 0.00 1.40
2033 5017 7.156876 TCTCTCCGTTTTTCATGCAAATTAT 57.843 32.000 0.00 0.00 0.00 1.28
2034 5018 8.275015 TCTCTCCGTTTTTCATGCAAATTATA 57.725 30.769 0.00 0.00 0.00 0.98
2099 5084 4.752101 ACATGTTCTCTCCGTTTTTCTCAG 59.248 41.667 0.00 0.00 0.00 3.35
2222 5207 9.845740 ACATAAATAACATACTATGCACCTTGA 57.154 29.630 0.00 0.00 0.00 3.02
2229 5214 5.415701 ACATACTATGCACCTTGAAAGTTGG 59.584 40.000 0.00 0.00 0.00 3.77
2366 5602 7.753132 GTCACGCATCTTTTGTAAAATGGATTA 59.247 33.333 0.00 0.00 0.00 1.75
2526 5762 7.500559 GGATGCTGAATGAGGTAAATTCTTACT 59.499 37.037 0.00 0.00 38.01 2.24
2535 5771 7.553334 TGAGGTAAATTCTTACTCTACGCAAT 58.447 34.615 0.00 0.00 38.01 3.56
2542 5778 2.154567 TACTCTACGCAATGGGTCCT 57.845 50.000 6.13 0.00 0.00 3.85
2753 5989 0.323302 TAACCATGCGCAGACTTCCA 59.677 50.000 18.32 0.00 0.00 3.53
2911 6150 7.175347 TGGCTTGGTAATGCATATTGTTTAA 57.825 32.000 0.00 0.00 0.00 1.52
2932 6171 9.185192 GTTTAAGTAACTAGTCAATGTGTACGT 57.815 33.333 0.00 0.00 33.79 3.57
2933 6172 8.732413 TTAAGTAACTAGTCAATGTGTACGTG 57.268 34.615 0.00 0.00 0.00 4.49
2934 6173 5.159209 AGTAACTAGTCAATGTGTACGTGC 58.841 41.667 0.00 0.00 0.00 5.34
2935 6174 3.653539 ACTAGTCAATGTGTACGTGCA 57.346 42.857 0.82 0.82 0.00 4.57
2937 6176 4.566004 ACTAGTCAATGTGTACGTGCAAT 58.434 39.130 8.25 1.77 0.00 3.56
2938 6177 3.811722 AGTCAATGTGTACGTGCAATG 57.188 42.857 8.25 8.35 0.00 2.82
2939 6178 2.095768 AGTCAATGTGTACGTGCAATGC 60.096 45.455 8.25 0.00 0.00 3.56
2952 6191 3.377346 TGCAATGCACGTTAATTTGGT 57.623 38.095 2.72 0.00 31.71 3.67
2953 6192 4.505313 TGCAATGCACGTTAATTTGGTA 57.495 36.364 2.72 0.00 31.71 3.25
2954 6193 4.480541 TGCAATGCACGTTAATTTGGTAG 58.519 39.130 2.72 0.00 31.71 3.18
2955 6194 4.022762 TGCAATGCACGTTAATTTGGTAGT 60.023 37.500 2.72 0.00 31.71 2.73
2956 6195 5.181433 TGCAATGCACGTTAATTTGGTAGTA 59.819 36.000 2.72 0.00 31.71 1.82
2957 6196 6.127869 TGCAATGCACGTTAATTTGGTAGTAT 60.128 34.615 2.72 0.00 31.71 2.12
2958 6197 7.065923 TGCAATGCACGTTAATTTGGTAGTATA 59.934 33.333 2.72 0.00 31.71 1.47
2959 6198 8.073768 GCAATGCACGTTAATTTGGTAGTATAT 58.926 33.333 0.00 0.00 0.00 0.86
2960 6199 9.944663 CAATGCACGTTAATTTGGTAGTATATT 57.055 29.630 0.00 0.00 0.00 1.28
2971 6210 6.779115 TTGGTAGTATATTAAGTGCATGCG 57.221 37.500 14.09 0.00 0.00 4.73
2972 6211 5.234752 TGGTAGTATATTAAGTGCATGCGG 58.765 41.667 14.09 0.00 0.00 5.69
2973 6212 5.011227 TGGTAGTATATTAAGTGCATGCGGA 59.989 40.000 14.09 0.00 0.00 5.54
2974 6213 6.106673 GGTAGTATATTAAGTGCATGCGGAT 58.893 40.000 14.09 3.59 0.00 4.18
2975 6214 7.093684 TGGTAGTATATTAAGTGCATGCGGATA 60.094 37.037 14.09 6.94 0.00 2.59
2976 6215 7.926555 GGTAGTATATTAAGTGCATGCGGATAT 59.073 37.037 14.09 13.06 0.00 1.63
2977 6216 9.314321 GTAGTATATTAAGTGCATGCGGATATT 57.686 33.333 14.09 5.62 0.00 1.28
2979 6218 9.884636 AGTATATTAAGTGCATGCGGATATTAA 57.115 29.630 14.09 12.83 0.00 1.40
2981 6220 8.792830 ATATTAAGTGCATGCGGATATTAAGT 57.207 30.769 14.09 4.58 0.00 2.24
2982 6221 9.884636 ATATTAAGTGCATGCGGATATTAAGTA 57.115 29.630 14.09 8.17 0.00 2.24
2983 6222 7.652300 TTAAGTGCATGCGGATATTAAGTAG 57.348 36.000 14.09 0.00 0.00 2.57
2984 6223 4.569943 AGTGCATGCGGATATTAAGTAGG 58.430 43.478 14.09 0.00 0.00 3.18
2985 6224 4.283467 AGTGCATGCGGATATTAAGTAGGA 59.717 41.667 14.09 0.00 0.00 2.94
2986 6225 5.046304 AGTGCATGCGGATATTAAGTAGGAT 60.046 40.000 14.09 0.00 0.00 3.24
2987 6226 6.154534 AGTGCATGCGGATATTAAGTAGGATA 59.845 38.462 14.09 0.00 0.00 2.59
2988 6227 6.986817 GTGCATGCGGATATTAAGTAGGATAT 59.013 38.462 14.09 0.00 0.00 1.63
2989 6228 7.495934 GTGCATGCGGATATTAAGTAGGATATT 59.504 37.037 14.09 0.00 0.00 1.28
2990 6229 8.700973 TGCATGCGGATATTAAGTAGGATATTA 58.299 33.333 14.09 0.00 0.00 0.98
2991 6230 9.712305 GCATGCGGATATTAAGTAGGATATTAT 57.288 33.333 0.00 0.00 0.00 1.28
3017 6256 8.936070 TTGCGTGTTATTATGTGATTAGTACT 57.064 30.769 0.00 0.00 0.00 2.73
3041 6280 8.694540 ACTATATTTGGCATGAAATTAACTGCA 58.305 29.630 0.00 0.00 36.34 4.41
3042 6281 7.775397 ATATTTGGCATGAAATTAACTGCAC 57.225 32.000 0.00 0.53 36.34 4.57
3043 6282 3.214697 TGGCATGAAATTAACTGCACG 57.785 42.857 0.00 0.00 36.34 5.34
3044 6283 1.919918 GGCATGAAATTAACTGCACGC 59.080 47.619 0.00 0.00 36.34 5.34
3045 6284 2.415893 GGCATGAAATTAACTGCACGCT 60.416 45.455 0.00 0.00 36.34 5.07
3046 6285 3.181501 GGCATGAAATTAACTGCACGCTA 60.182 43.478 0.00 0.00 36.34 4.26
3047 6286 4.411327 GCATGAAATTAACTGCACGCTAA 58.589 39.130 0.00 0.00 34.77 3.09
3048 6287 4.856487 GCATGAAATTAACTGCACGCTAAA 59.144 37.500 0.00 0.00 34.77 1.85
3049 6288 5.220024 GCATGAAATTAACTGCACGCTAAAC 60.220 40.000 0.00 0.00 34.77 2.01
3060 6299 4.417240 GCTAAACGTGTTGAGCGC 57.583 55.556 6.34 0.00 37.32 5.92
3061 6300 1.860078 GCTAAACGTGTTGAGCGCT 59.140 52.632 11.27 11.27 37.32 5.92
3062 6301 0.234884 GCTAAACGTGTTGAGCGCTT 59.765 50.000 13.26 0.00 37.32 4.68
3063 6302 1.937359 CTAAACGTGTTGAGCGCTTG 58.063 50.000 13.26 0.00 0.00 4.01
3064 6303 1.525197 CTAAACGTGTTGAGCGCTTGA 59.475 47.619 13.26 0.00 0.00 3.02
3065 6304 0.027586 AAACGTGTTGAGCGCTTGAC 59.972 50.000 13.26 14.30 0.00 3.18
3066 6305 1.087202 AACGTGTTGAGCGCTTGACA 61.087 50.000 13.26 16.97 0.00 3.58
3067 6306 0.880278 ACGTGTTGAGCGCTTGACAT 60.880 50.000 23.66 10.87 0.00 3.06
3068 6307 0.235665 CGTGTTGAGCGCTTGACATT 59.764 50.000 23.66 0.00 0.00 2.71
3069 6308 1.678360 GTGTTGAGCGCTTGACATTG 58.322 50.000 23.66 0.00 0.00 2.82
3070 6309 1.264020 GTGTTGAGCGCTTGACATTGA 59.736 47.619 23.66 4.46 0.00 2.57
3071 6310 1.946081 TGTTGAGCGCTTGACATTGAA 59.054 42.857 13.26 0.00 0.00 2.69
3072 6311 2.031769 TGTTGAGCGCTTGACATTGAAG 60.032 45.455 13.26 0.00 0.00 3.02
3073 6312 0.518636 TGAGCGCTTGACATTGAAGC 59.481 50.000 13.26 0.00 42.08 3.86
3074 6313 0.518636 GAGCGCTTGACATTGAAGCA 59.481 50.000 13.26 0.00 45.15 3.91
3075 6314 0.520404 AGCGCTTGACATTGAAGCAG 59.480 50.000 2.64 4.96 45.15 4.24
3076 6315 0.239347 GCGCTTGACATTGAAGCAGT 59.761 50.000 0.00 0.00 45.15 4.40
3077 6316 1.727213 GCGCTTGACATTGAAGCAGTC 60.727 52.381 0.00 0.00 45.15 3.51
3078 6317 1.802960 CGCTTGACATTGAAGCAGTCT 59.197 47.619 9.84 0.00 45.15 3.24
3079 6318 2.995939 CGCTTGACATTGAAGCAGTCTA 59.004 45.455 9.84 0.00 45.15 2.59
3080 6319 3.061831 CGCTTGACATTGAAGCAGTCTAG 59.938 47.826 9.84 0.00 45.15 2.43
3081 6320 3.373439 GCTTGACATTGAAGCAGTCTAGG 59.627 47.826 0.00 0.00 44.43 3.02
3082 6321 4.573900 CTTGACATTGAAGCAGTCTAGGT 58.426 43.478 0.00 0.00 33.50 3.08
3083 6322 4.193826 TGACATTGAAGCAGTCTAGGTC 57.806 45.455 8.81 8.81 41.32 3.85
3084 6323 3.182967 GACATTGAAGCAGTCTAGGTCG 58.817 50.000 0.00 0.00 34.13 4.79
3085 6324 2.563179 ACATTGAAGCAGTCTAGGTCGT 59.437 45.455 0.00 0.00 0.00 4.34
3086 6325 3.006967 ACATTGAAGCAGTCTAGGTCGTT 59.993 43.478 0.00 0.00 0.00 3.85
3087 6326 2.724977 TGAAGCAGTCTAGGTCGTTG 57.275 50.000 0.00 0.00 0.00 4.10
3088 6327 1.272490 TGAAGCAGTCTAGGTCGTTGG 59.728 52.381 0.00 0.00 0.00 3.77
3089 6328 1.544691 GAAGCAGTCTAGGTCGTTGGA 59.455 52.381 0.00 0.00 0.00 3.53
3090 6329 1.853963 AGCAGTCTAGGTCGTTGGAT 58.146 50.000 0.00 0.00 0.00 3.41
3091 6330 2.180276 AGCAGTCTAGGTCGTTGGATT 58.820 47.619 0.00 0.00 0.00 3.01
3092 6331 2.093973 AGCAGTCTAGGTCGTTGGATTG 60.094 50.000 0.00 0.00 0.00 2.67
3093 6332 2.094182 GCAGTCTAGGTCGTTGGATTGA 60.094 50.000 0.00 0.00 0.00 2.57
3094 6333 3.512680 CAGTCTAGGTCGTTGGATTGAC 58.487 50.000 0.00 0.00 0.00 3.18
3095 6334 3.056821 CAGTCTAGGTCGTTGGATTGACA 60.057 47.826 0.00 0.00 36.83 3.58
3096 6335 3.769844 AGTCTAGGTCGTTGGATTGACAT 59.230 43.478 0.00 0.00 36.83 3.06
3097 6336 3.865745 GTCTAGGTCGTTGGATTGACATG 59.134 47.826 0.00 0.00 36.83 3.21
3098 6337 3.767131 TCTAGGTCGTTGGATTGACATGA 59.233 43.478 0.00 0.00 36.83 3.07
3099 6338 3.634397 AGGTCGTTGGATTGACATGAT 57.366 42.857 0.00 0.00 36.83 2.45
3100 6339 3.955471 AGGTCGTTGGATTGACATGATT 58.045 40.909 0.00 0.00 36.83 2.57
3101 6340 4.335416 AGGTCGTTGGATTGACATGATTT 58.665 39.130 0.00 0.00 36.83 2.17
3102 6341 4.156556 AGGTCGTTGGATTGACATGATTTG 59.843 41.667 0.00 0.00 36.83 2.32
3103 6342 4.155826 GGTCGTTGGATTGACATGATTTGA 59.844 41.667 0.00 0.00 36.83 2.69
3104 6343 5.335583 GGTCGTTGGATTGACATGATTTGAA 60.336 40.000 0.00 0.00 36.83 2.69
3105 6344 5.796935 GTCGTTGGATTGACATGATTTGAAG 59.203 40.000 0.00 0.00 35.20 3.02
3106 6345 5.097529 CGTTGGATTGACATGATTTGAAGG 58.902 41.667 0.00 0.00 0.00 3.46
3107 6346 4.724074 TGGATTGACATGATTTGAAGGC 57.276 40.909 0.00 0.00 0.00 4.35
3108 6347 3.448301 TGGATTGACATGATTTGAAGGCC 59.552 43.478 0.00 0.00 0.00 5.19
3109 6348 3.489738 GGATTGACATGATTTGAAGGCCG 60.490 47.826 0.00 0.00 0.00 6.13
3110 6349 2.488204 TGACATGATTTGAAGGCCGA 57.512 45.000 0.00 0.00 0.00 5.54
3111 6350 2.358957 TGACATGATTTGAAGGCCGAG 58.641 47.619 0.00 0.00 0.00 4.63
3112 6351 2.027285 TGACATGATTTGAAGGCCGAGA 60.027 45.455 0.00 0.00 0.00 4.04
3113 6352 3.209410 GACATGATTTGAAGGCCGAGAT 58.791 45.455 0.00 0.00 0.00 2.75
3114 6353 3.624777 ACATGATTTGAAGGCCGAGATT 58.375 40.909 0.00 0.00 0.00 2.40
3115 6354 4.780815 ACATGATTTGAAGGCCGAGATTA 58.219 39.130 0.00 0.00 0.00 1.75
3116 6355 5.192927 ACATGATTTGAAGGCCGAGATTAA 58.807 37.500 0.00 0.00 0.00 1.40
3117 6356 5.829924 ACATGATTTGAAGGCCGAGATTAAT 59.170 36.000 0.00 0.00 0.00 1.40
3118 6357 6.322201 ACATGATTTGAAGGCCGAGATTAATT 59.678 34.615 0.00 0.00 0.00 1.40
3119 6358 6.135290 TGATTTGAAGGCCGAGATTAATTG 57.865 37.500 0.00 0.00 0.00 2.32
3120 6359 4.981806 TTTGAAGGCCGAGATTAATTGG 57.018 40.909 0.00 0.00 0.00 3.16
3121 6360 3.924114 TGAAGGCCGAGATTAATTGGA 57.076 42.857 0.00 0.00 0.00 3.53
3122 6361 4.437682 TGAAGGCCGAGATTAATTGGAT 57.562 40.909 0.00 0.00 0.00 3.41
3123 6362 4.389374 TGAAGGCCGAGATTAATTGGATC 58.611 43.478 0.00 0.00 0.00 3.36
3124 6363 4.103153 TGAAGGCCGAGATTAATTGGATCT 59.897 41.667 0.00 6.01 36.60 2.75
3125 6364 4.013267 AGGCCGAGATTAATTGGATCTG 57.987 45.455 9.96 4.52 34.13 2.90
3126 6365 2.485814 GGCCGAGATTAATTGGATCTGC 59.514 50.000 9.96 8.37 34.13 4.26
3127 6366 2.485814 GCCGAGATTAATTGGATCTGCC 59.514 50.000 9.96 0.00 34.13 4.85
3128 6367 3.077359 CCGAGATTAATTGGATCTGCCC 58.923 50.000 9.96 0.00 34.13 5.36
3129 6368 3.077359 CGAGATTAATTGGATCTGCCCC 58.923 50.000 9.96 0.00 34.13 5.80
3130 6369 3.244700 CGAGATTAATTGGATCTGCCCCT 60.245 47.826 9.96 0.00 34.13 4.79
3131 6370 4.734266 GAGATTAATTGGATCTGCCCCTT 58.266 43.478 9.96 0.00 34.13 3.95
3132 6371 5.143369 GAGATTAATTGGATCTGCCCCTTT 58.857 41.667 9.96 0.00 34.13 3.11
3133 6372 4.897670 AGATTAATTGGATCTGCCCCTTTG 59.102 41.667 5.62 0.00 32.79 2.77
3134 6373 1.870064 AATTGGATCTGCCCCTTTGG 58.130 50.000 0.00 0.00 34.97 3.28
3150 6389 6.867519 CCCTTTGGGTCTTTTTATATTGGT 57.132 37.500 0.00 0.00 38.25 3.67
3151 6390 7.964666 CCCTTTGGGTCTTTTTATATTGGTA 57.035 36.000 0.00 0.00 38.25 3.25
3152 6391 8.547481 CCCTTTGGGTCTTTTTATATTGGTAT 57.453 34.615 0.00 0.00 38.25 2.73
3153 6392 9.649316 CCCTTTGGGTCTTTTTATATTGGTATA 57.351 33.333 0.00 0.00 38.25 1.47
3309 6551 5.191722 AGGTATGCATAAACTTCCCTTCTCA 59.808 40.000 8.28 0.00 0.00 3.27
3317 6559 3.760580 ACTTCCCTTCTCAGTTGTCTG 57.239 47.619 0.00 0.00 42.54 3.51
3335 6577 5.680619 TGTCTGCAAAACTTCCTTCTCTAA 58.319 37.500 0.00 0.00 0.00 2.10
3339 6581 6.263168 TCTGCAAAACTTCCTTCTCTAAAAGG 59.737 38.462 0.00 0.00 46.11 3.11
3340 6582 5.221244 TGCAAAACTTCCTTCTCTAAAAGGC 60.221 40.000 0.00 0.00 44.66 4.35
3341 6583 5.221244 GCAAAACTTCCTTCTCTAAAAGGCA 60.221 40.000 0.00 0.00 44.66 4.75
3343 6585 7.436933 CAAAACTTCCTTCTCTAAAAGGCAAT 58.563 34.615 0.00 0.00 44.66 3.56
3344 6586 8.576442 CAAAACTTCCTTCTCTAAAAGGCAATA 58.424 33.333 0.00 0.00 44.66 1.90
3345 6587 8.885693 AAACTTCCTTCTCTAAAAGGCAATAT 57.114 30.769 0.00 0.00 44.66 1.28
3346 6588 7.872113 ACTTCCTTCTCTAAAAGGCAATATG 57.128 36.000 0.00 0.00 44.66 1.78
3347 6589 7.633789 ACTTCCTTCTCTAAAAGGCAATATGA 58.366 34.615 0.00 0.00 44.66 2.15
3351 6593 6.319658 CCTTCTCTAAAAGGCAATATGAGCAA 59.680 38.462 3.20 0.00 39.47 3.91
3363 6606 4.635699 ATATGAGCAATCTCCATCTGCA 57.364 40.909 0.00 0.00 38.58 4.41
3367 6610 3.192001 TGAGCAATCTCCATCTGCAAAAC 59.808 43.478 0.00 0.00 38.58 2.43
3370 6613 4.082354 AGCAATCTCCATCTGCAAAACTTC 60.082 41.667 0.00 0.00 38.58 3.01
3371 6614 4.741342 CAATCTCCATCTGCAAAACTTCC 58.259 43.478 0.00 0.00 0.00 3.46
3374 6617 4.074970 TCTCCATCTGCAAAACTTCCTTC 58.925 43.478 0.00 0.00 0.00 3.46
3375 6618 4.077822 CTCCATCTGCAAAACTTCCTTCT 58.922 43.478 0.00 0.00 0.00 2.85
3376 6619 4.074970 TCCATCTGCAAAACTTCCTTCTC 58.925 43.478 0.00 0.00 0.00 2.87
3377 6620 4.077822 CCATCTGCAAAACTTCCTTCTCT 58.922 43.478 0.00 0.00 0.00 3.10
3378 6621 5.013079 TCCATCTGCAAAACTTCCTTCTCTA 59.987 40.000 0.00 0.00 0.00 2.43
3379 6622 5.707298 CCATCTGCAAAACTTCCTTCTCTAA 59.293 40.000 0.00 0.00 0.00 2.10
3380 6623 6.207417 CCATCTGCAAAACTTCCTTCTCTAAA 59.793 38.462 0.00 0.00 0.00 1.85
3381 6624 7.255590 CCATCTGCAAAACTTCCTTCTCTAAAA 60.256 37.037 0.00 0.00 0.00 1.52
3382 6625 7.264373 TCTGCAAAACTTCCTTCTCTAAAAG 57.736 36.000 0.00 0.00 0.00 2.27
3383 6626 6.263168 TCTGCAAAACTTCCTTCTCTAAAAGG 59.737 38.462 0.00 0.00 46.11 3.11
3384 6627 5.221244 TGCAAAACTTCCTTCTCTAAAAGGC 60.221 40.000 0.00 0.00 44.66 4.35
3385 6628 5.221244 GCAAAACTTCCTTCTCTAAAAGGCA 60.221 40.000 0.00 0.00 44.66 4.75
3386 6629 6.682861 GCAAAACTTCCTTCTCTAAAAGGCAA 60.683 38.462 0.00 0.00 44.66 4.52
3387 6630 7.436933 CAAAACTTCCTTCTCTAAAAGGCAAT 58.563 34.615 0.00 0.00 44.66 3.56
3388 6631 8.576442 CAAAACTTCCTTCTCTAAAAGGCAATA 58.424 33.333 0.00 0.00 44.66 1.90
3389 6632 8.885693 AAACTTCCTTCTCTAAAAGGCAATAT 57.114 30.769 0.00 0.00 44.66 1.28
3390 6633 7.872113 ACTTCCTTCTCTAAAAGGCAATATG 57.128 36.000 0.00 0.00 44.66 1.78
3391 6634 7.633789 ACTTCCTTCTCTAAAAGGCAATATGA 58.366 34.615 0.00 0.00 44.66 2.15
3392 6635 7.772757 ACTTCCTTCTCTAAAAGGCAATATGAG 59.227 37.037 0.00 0.00 44.66 2.90
3393 6636 6.058183 TCCTTCTCTAAAAGGCAATATGAGC 58.942 40.000 0.00 0.00 44.66 4.26
3394 6637 5.824624 CCTTCTCTAAAAGGCAATATGAGCA 59.175 40.000 3.20 0.00 39.47 4.26
3395 6638 6.319658 CCTTCTCTAAAAGGCAATATGAGCAA 59.680 38.462 3.20 0.00 39.47 3.91
3396 6639 7.014038 CCTTCTCTAAAAGGCAATATGAGCAAT 59.986 37.037 3.20 0.00 39.47 3.56
3397 6640 7.502120 TCTCTAAAAGGCAATATGAGCAATC 57.498 36.000 3.20 0.00 0.00 2.67
3398 6641 7.285566 TCTCTAAAAGGCAATATGAGCAATCT 58.714 34.615 3.20 0.00 0.00 2.40
3399 6642 7.443575 TCTCTAAAAGGCAATATGAGCAATCTC 59.556 37.037 3.20 0.00 39.78 2.75
3400 6643 5.526506 AAAAGGCAATATGAGCAATCTCC 57.473 39.130 3.20 0.00 38.58 3.71
3401 6644 3.870538 AGGCAATATGAGCAATCTCCA 57.129 42.857 3.20 0.00 38.58 3.86
3402 6645 4.383931 AGGCAATATGAGCAATCTCCAT 57.616 40.909 3.20 0.00 38.58 3.41
3403 6646 4.333690 AGGCAATATGAGCAATCTCCATC 58.666 43.478 3.20 0.00 38.58 3.51
3404 6647 4.043059 AGGCAATATGAGCAATCTCCATCT 59.957 41.667 3.20 0.00 38.58 2.90
3405 6648 4.156190 GGCAATATGAGCAATCTCCATCTG 59.844 45.833 3.20 0.00 38.58 2.90
3406 6649 4.379603 GCAATATGAGCAATCTCCATCTGC 60.380 45.833 0.00 0.00 38.58 4.26
3407 6650 4.635699 ATATGAGCAATCTCCATCTGCA 57.364 40.909 0.00 0.00 38.58 4.41
3408 6651 2.793288 TGAGCAATCTCCATCTGCAA 57.207 45.000 0.00 0.00 38.58 4.08
3409 6652 3.076079 TGAGCAATCTCCATCTGCAAA 57.924 42.857 0.00 0.00 38.58 3.68
3410 6653 3.423749 TGAGCAATCTCCATCTGCAAAA 58.576 40.909 0.00 0.00 38.58 2.44
3411 6654 4.021229 TGAGCAATCTCCATCTGCAAAAT 58.979 39.130 0.00 0.00 38.58 1.82
3412 6655 4.097437 TGAGCAATCTCCATCTGCAAAATC 59.903 41.667 0.00 0.00 38.58 2.17
3413 6656 4.279145 AGCAATCTCCATCTGCAAAATCT 58.721 39.130 0.00 0.00 38.58 2.40
3414 6657 5.443283 AGCAATCTCCATCTGCAAAATCTA 58.557 37.500 0.00 0.00 38.58 1.98
3415 6658 5.889853 AGCAATCTCCATCTGCAAAATCTAA 59.110 36.000 0.00 0.00 38.58 2.10
3416 6659 6.039493 AGCAATCTCCATCTGCAAAATCTAAG 59.961 38.462 0.00 0.00 38.58 2.18
3417 6660 6.039047 GCAATCTCCATCTGCAAAATCTAAGA 59.961 38.462 0.00 0.00 36.09 2.10
3418 6661 7.255520 GCAATCTCCATCTGCAAAATCTAAGAT 60.256 37.037 0.00 0.00 36.09 2.40
3419 6662 9.281371 CAATCTCCATCTGCAAAATCTAAGATA 57.719 33.333 0.00 0.00 0.00 1.98
3463 6706 2.030363 TGCCATCCATTTTGAACGTGTC 60.030 45.455 0.00 0.00 0.00 3.67
3742 6988 9.128107 CAATTTCGTAATAAGTGTTCAAGCATT 57.872 29.630 0.00 0.00 0.00 3.56
3743 6989 9.691362 AATTTCGTAATAAGTGTTCAAGCATTT 57.309 25.926 0.00 0.00 0.00 2.32
3746 6992 9.982291 TTCGTAATAAGTGTTCAAGCATTTATC 57.018 29.630 0.00 0.00 32.52 1.75
3747 6993 9.378551 TCGTAATAAGTGTTCAAGCATTTATCT 57.621 29.630 0.00 0.00 32.52 1.98
3812 7059 5.176590 TCCACTTTTATTTGCGCATTTGTTC 59.823 36.000 12.75 0.00 0.00 3.18
3833 7080 3.070446 TCGTAGCACTTGGGAAAGAAGAA 59.930 43.478 0.00 0.00 0.00 2.52
3838 7088 5.066593 AGCACTTGGGAAAGAAGAAAGTAG 58.933 41.667 0.00 0.00 30.20 2.57
3898 7157 0.036022 AGGCACACCTCAGAAAGAGC 59.964 55.000 0.00 0.00 46.34 4.09
3899 7158 0.250467 GGCACACCTCAGAAAGAGCA 60.250 55.000 0.00 0.00 43.31 4.26
3900 7159 1.155042 GCACACCTCAGAAAGAGCAG 58.845 55.000 0.00 0.00 43.31 4.24
3901 7160 1.270518 GCACACCTCAGAAAGAGCAGA 60.271 52.381 0.00 0.00 43.31 4.26
3902 7161 2.614987 GCACACCTCAGAAAGAGCAGAT 60.615 50.000 0.00 0.00 43.31 2.90
3903 7162 3.260740 CACACCTCAGAAAGAGCAGATC 58.739 50.000 0.00 0.00 43.31 2.75
3904 7163 2.902486 ACACCTCAGAAAGAGCAGATCA 59.098 45.455 0.00 0.00 43.31 2.92
3905 7164 3.055963 ACACCTCAGAAAGAGCAGATCAG 60.056 47.826 0.00 0.00 43.31 2.90
3906 7165 3.195182 CACCTCAGAAAGAGCAGATCAGA 59.805 47.826 0.00 0.00 43.31 3.27
3907 7166 4.032310 ACCTCAGAAAGAGCAGATCAGAT 58.968 43.478 0.00 0.00 43.31 2.90
3908 7167 4.141892 ACCTCAGAAAGAGCAGATCAGATG 60.142 45.833 0.00 0.00 43.31 2.90
3909 7168 4.373527 CTCAGAAAGAGCAGATCAGATGG 58.626 47.826 0.00 0.00 37.59 3.51
3910 7169 2.873472 CAGAAAGAGCAGATCAGATGGC 59.127 50.000 0.00 0.00 0.00 4.40
3935 7194 0.250513 GAGAAGGTCCCTTGTGCGAT 59.749 55.000 2.65 0.00 36.26 4.58
3939 7198 0.321653 AGGTCCCTTGTGCGATCAAC 60.322 55.000 0.00 0.00 0.00 3.18
3940 7199 0.605319 GGTCCCTTGTGCGATCAACA 60.605 55.000 0.00 0.00 0.00 3.33
3941 7200 1.453155 GTCCCTTGTGCGATCAACAT 58.547 50.000 0.00 0.00 0.00 2.71
3942 7201 1.131126 GTCCCTTGTGCGATCAACATG 59.869 52.381 0.00 0.00 0.00 3.21
3943 7202 1.003003 TCCCTTGTGCGATCAACATGA 59.997 47.619 0.00 2.62 0.00 3.07
3944 7203 1.131126 CCCTTGTGCGATCAACATGAC 59.869 52.381 0.00 0.00 0.00 3.06
3945 7204 1.131126 CCTTGTGCGATCAACATGACC 59.869 52.381 0.00 0.00 0.00 4.02
3946 7205 0.795698 TTGTGCGATCAACATGACCG 59.204 50.000 0.00 0.00 36.22 4.79
3963 7222 1.661821 CGACTATACAGCGCCTGCC 60.662 63.158 2.29 0.00 44.31 4.85
3966 7225 1.958205 CTATACAGCGCCTGCCTGC 60.958 63.158 2.29 0.00 44.31 4.85
3985 7244 2.676471 ATTGCGACACCCAAGGGC 60.676 61.111 4.70 0.00 39.32 5.19
3989 7248 2.113139 CGACACCCAAGGGCTTGT 59.887 61.111 4.70 2.81 38.85 3.16
4054 7313 3.910627 TGGAAGGAGAAAGTTAGGAGCTT 59.089 43.478 0.00 0.00 0.00 3.74
4071 7330 4.082517 GGAGCTTGATCTGGAAAAAGAACC 60.083 45.833 0.00 0.00 0.00 3.62
4112 7371 2.234143 TCATTGGATGTGGCGAAACAA 58.766 42.857 0.00 0.00 32.81 2.83
4125 7384 0.442699 GAAACAACATCCCTCGCGTC 59.557 55.000 5.77 0.00 0.00 5.19
4127 7386 3.554692 CAACATCCCTCGCGTCGC 61.555 66.667 7.29 7.29 0.00 5.19
4256 7554 2.383527 GGACTGAGCGGAACAAGCG 61.384 63.158 0.00 0.00 40.04 4.68
4373 7787 4.946160 AGATTTTGGAATGGGTAGTGGA 57.054 40.909 0.00 0.00 0.00 4.02
4404 7818 7.710044 TCACAATTTGCAATGATAACACACTTT 59.290 29.630 7.04 0.00 0.00 2.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 3.498774 AATGCTATAGGACTTGCCAGG 57.501 47.619 1.04 0.00 40.02 4.45
12 13 4.694509 CCTCTCATGCAAATGCTATAGGAC 59.305 45.833 6.97 0.00 42.66 3.85
19 20 1.822990 CAACCCTCTCATGCAAATGCT 59.177 47.619 6.97 0.00 42.66 3.79
29 30 0.764890 CCACCAACTCAACCCTCTCA 59.235 55.000 0.00 0.00 0.00 3.27
30 31 1.002544 CTCCACCAACTCAACCCTCTC 59.997 57.143 0.00 0.00 0.00 3.20
64 65 0.033504 TCTCCTTCCACAAGCGTCAC 59.966 55.000 0.00 0.00 0.00 3.67
88 89 2.024273 TGGTCTCCTTACTCTCGGGAAT 60.024 50.000 0.00 0.00 0.00 3.01
90 91 0.997363 TGGTCTCCTTACTCTCGGGA 59.003 55.000 0.00 0.00 0.00 5.14
96 141 2.567615 TCTTGCCTTGGTCTCCTTACTC 59.432 50.000 0.00 0.00 0.00 2.59
99 144 2.289444 CGTTCTTGCCTTGGTCTCCTTA 60.289 50.000 0.00 0.00 0.00 2.69
127 172 0.316689 CACTTCCCAACGTGTTTCGC 60.317 55.000 0.00 0.00 44.19 4.70
136 187 0.240945 CATTGTCGCCACTTCCCAAC 59.759 55.000 0.00 0.00 0.00 3.77
142 193 0.400213 TCCCTTCATTGTCGCCACTT 59.600 50.000 0.00 0.00 0.00 3.16
152 203 3.541242 TGGTTTGGATGTCCCTTCATT 57.459 42.857 0.00 0.00 35.38 2.57
198 250 0.040058 TTGAGCCCGGTGTCTACCTA 59.960 55.000 0.00 0.00 45.22 3.08
247 299 0.807496 GGCTCACAGGAAATGCTGAC 59.193 55.000 9.02 0.00 0.00 3.51
251 303 2.093235 ACTCTAGGCTCACAGGAAATGC 60.093 50.000 0.00 0.00 0.00 3.56
288 346 7.833786 TCAGAAAGACACAAAGTACCGTATAT 58.166 34.615 0.00 0.00 0.00 0.86
298 356 6.620678 TGTTTTCCTTCAGAAAGACACAAAG 58.379 36.000 0.00 0.00 45.11 2.77
300 358 6.582677 TTGTTTTCCTTCAGAAAGACACAA 57.417 33.333 3.10 3.10 45.11 3.33
444 514 8.017418 ACAATAATTTCCTCACCAGTTCAAAA 57.983 30.769 0.00 0.00 0.00 2.44
591 661 3.194025 AAGGGGGAGAGAGTGGCCA 62.194 63.158 0.00 0.00 0.00 5.36
1020 1538 0.175760 ACACAGAATCACGATCCCCG 59.824 55.000 0.00 0.00 45.44 5.73
1086 1604 1.519455 GAACGTGAGCCCCATCTCG 60.519 63.158 0.00 0.00 40.87 4.04
1209 1727 0.105039 GGATGGTGGTGACGATCTCC 59.895 60.000 0.00 0.00 37.45 3.71
1288 1806 6.255215 CCAATATAAGCAACAACTTGGTACG 58.745 40.000 0.00 0.00 37.11 3.67
1289 1807 6.376018 TCCCAATATAAGCAACAACTTGGTAC 59.624 38.462 0.00 0.00 37.11 3.34
1290 1808 6.486056 TCCCAATATAAGCAACAACTTGGTA 58.514 36.000 0.00 0.00 37.11 3.25
1299 1817 6.347725 CGCTACAGATTCCCAATATAAGCAAC 60.348 42.308 0.00 0.00 0.00 4.17
1307 1825 3.452990 TGTTCCGCTACAGATTCCCAATA 59.547 43.478 0.00 0.00 0.00 1.90
1335 1853 0.174162 GGGATCACATTGCCAAGCAC 59.826 55.000 0.00 0.00 38.71 4.40
1592 2445 4.553330 AGCTCAGGACCGATTTTCTTAA 57.447 40.909 0.00 0.00 0.00 1.85
1721 2603 3.084039 TCAATGACTTCCTGTTGGCATC 58.916 45.455 0.00 0.00 0.00 3.91
1804 2688 5.892119 TCAGTGTACTTTGAGATAGGGTAGG 59.108 44.000 0.00 0.00 0.00 3.18
1871 2755 9.128404 GGCACATAATATCATCCAATGACATAT 57.872 33.333 0.00 0.00 43.01 1.78
1922 2806 4.527816 TCTTGCCTTTTAGCACAATCCATT 59.472 37.500 0.00 0.00 43.97 3.16
1992 2876 3.804036 AGAGAACATGAACAAACGTCCA 58.196 40.909 0.00 0.00 0.00 4.02
1995 2879 2.800544 CGGAGAGAACATGAACAAACGT 59.199 45.455 0.00 0.00 0.00 3.99
1997 2881 4.813296 AACGGAGAGAACATGAACAAAC 57.187 40.909 0.00 0.00 0.00 2.93
1998 2882 5.828299 AAAACGGAGAGAACATGAACAAA 57.172 34.783 0.00 0.00 0.00 2.83
1999 2883 5.355630 TGAAAAACGGAGAGAACATGAACAA 59.644 36.000 0.00 0.00 0.00 2.83
2000 2884 4.878971 TGAAAAACGGAGAGAACATGAACA 59.121 37.500 0.00 0.00 0.00 3.18
2003 2887 4.083324 GCATGAAAAACGGAGAGAACATGA 60.083 41.667 0.00 0.00 36.87 3.07
2004 2888 4.161333 GCATGAAAAACGGAGAGAACATG 58.839 43.478 0.00 0.00 37.50 3.21
2005 2889 3.820467 TGCATGAAAAACGGAGAGAACAT 59.180 39.130 0.00 0.00 0.00 2.71
2006 2890 3.210227 TGCATGAAAAACGGAGAGAACA 58.790 40.909 0.00 0.00 0.00 3.18
2007 2891 3.896648 TGCATGAAAAACGGAGAGAAC 57.103 42.857 0.00 0.00 0.00 3.01
2008 2892 4.909696 TTTGCATGAAAAACGGAGAGAA 57.090 36.364 0.00 0.00 0.00 2.87
2009 2893 5.452078 AATTTGCATGAAAAACGGAGAGA 57.548 34.783 2.14 0.00 0.00 3.10
2010 2894 9.520204 AATATAATTTGCATGAAAAACGGAGAG 57.480 29.630 2.14 0.00 0.00 3.20
2040 5024 8.511604 AACAAATGTCCAAATCTGACCTATAG 57.488 34.615 0.00 0.00 31.60 1.31
2041 5025 9.967451 TTAACAAATGTCCAAATCTGACCTATA 57.033 29.630 0.00 0.00 31.60 1.31
2044 5028 7.671398 AGATTAACAAATGTCCAAATCTGACCT 59.329 33.333 13.51 0.00 34.01 3.85
2045 5029 7.756722 CAGATTAACAAATGTCCAAATCTGACC 59.243 37.037 24.37 3.88 43.36 4.02
2047 5031 7.039853 TGCAGATTAACAAATGTCCAAATCTGA 60.040 33.333 28.29 19.06 43.36 3.27
2049 5033 7.230849 TGCAGATTAACAAATGTCCAAATCT 57.769 32.000 10.53 10.53 34.80 2.40
2050 5034 7.384660 TGTTGCAGATTAACAAATGTCCAAATC 59.615 33.333 0.00 7.57 35.29 2.17
2099 5084 5.294552 CCTGTATTCGGAGGAAAGACAATTC 59.705 44.000 0.00 0.00 33.95 2.17
2216 5201 5.422012 ACAATTCAGTTCCAACTTTCAAGGT 59.578 36.000 0.00 0.00 37.08 3.50
2220 5205 9.883142 ATAAAAACAATTCAGTTCCAACTTTCA 57.117 25.926 0.00 0.00 37.08 2.69
2229 5214 9.556030 GCAGGTACTATAAAAACAATTCAGTTC 57.444 33.333 0.00 0.00 36.02 3.01
2526 5762 2.628178 CAGATAGGACCCATTGCGTAGA 59.372 50.000 0.00 0.00 0.00 2.59
2535 5771 3.780294 ACAAGTAATGCAGATAGGACCCA 59.220 43.478 0.00 0.00 0.00 4.51
2542 5778 9.109393 GATAAAGTCCAACAAGTAATGCAGATA 57.891 33.333 0.00 0.00 0.00 1.98
2571 5807 1.014044 TGTGAGCACTCGAAATCGCC 61.014 55.000 1.99 0.00 39.60 5.54
2736 5972 0.322816 AATGGAAGTCTGCGCATGGT 60.323 50.000 12.24 0.00 0.00 3.55
2789 6025 5.466728 CCAGTTATAATGACAAGGATGACGG 59.533 44.000 0.00 0.00 0.00 4.79
2911 6150 5.159209 GCACGTACACATTGACTAGTTACT 58.841 41.667 0.00 0.00 0.00 2.24
2916 6155 4.724885 GCATTGCACGTACACATTGACTAG 60.725 45.833 3.15 0.00 0.00 2.57
2918 6157 2.095768 GCATTGCACGTACACATTGACT 60.096 45.455 3.15 0.00 0.00 3.41
2919 6158 2.241722 GCATTGCACGTACACATTGAC 58.758 47.619 3.15 1.49 0.00 3.18
2932 6171 3.377346 ACCAAATTAACGTGCATTGCA 57.623 38.095 7.38 7.38 35.60 4.08
2933 6172 4.481463 ACTACCAAATTAACGTGCATTGC 58.519 39.130 0.46 0.46 0.00 3.56
2934 6173 9.944663 AATATACTACCAAATTAACGTGCATTG 57.055 29.630 0.00 0.00 0.00 2.82
2945 6184 8.289618 CGCATGCACTTAATATACTACCAAATT 58.710 33.333 19.57 0.00 0.00 1.82
2946 6185 7.094805 CCGCATGCACTTAATATACTACCAAAT 60.095 37.037 19.57 0.00 0.00 2.32
2947 6186 6.203915 CCGCATGCACTTAATATACTACCAAA 59.796 38.462 19.57 0.00 0.00 3.28
2948 6187 5.699001 CCGCATGCACTTAATATACTACCAA 59.301 40.000 19.57 0.00 0.00 3.67
2949 6188 5.011227 TCCGCATGCACTTAATATACTACCA 59.989 40.000 19.57 0.00 0.00 3.25
2950 6189 5.475719 TCCGCATGCACTTAATATACTACC 58.524 41.667 19.57 0.00 0.00 3.18
2951 6190 8.873215 ATATCCGCATGCACTTAATATACTAC 57.127 34.615 19.57 0.00 0.00 2.73
2953 6192 9.884636 TTAATATCCGCATGCACTTAATATACT 57.115 29.630 19.57 2.37 0.00 2.12
2955 6194 9.884636 ACTTAATATCCGCATGCACTTAATATA 57.115 29.630 19.57 4.53 0.00 0.86
2956 6195 8.792830 ACTTAATATCCGCATGCACTTAATAT 57.207 30.769 19.57 9.48 0.00 1.28
2957 6196 9.366216 CTACTTAATATCCGCATGCACTTAATA 57.634 33.333 19.57 7.60 0.00 0.98
2958 6197 7.334421 CCTACTTAATATCCGCATGCACTTAAT 59.666 37.037 19.57 5.58 0.00 1.40
2959 6198 6.649141 CCTACTTAATATCCGCATGCACTTAA 59.351 38.462 19.57 11.55 0.00 1.85
2960 6199 6.014925 TCCTACTTAATATCCGCATGCACTTA 60.015 38.462 19.57 5.72 0.00 2.24
2961 6200 4.997395 CCTACTTAATATCCGCATGCACTT 59.003 41.667 19.57 3.39 0.00 3.16
2962 6201 4.283467 TCCTACTTAATATCCGCATGCACT 59.717 41.667 19.57 3.59 0.00 4.40
2963 6202 4.566004 TCCTACTTAATATCCGCATGCAC 58.434 43.478 19.57 0.00 0.00 4.57
2964 6203 4.882842 TCCTACTTAATATCCGCATGCA 57.117 40.909 19.57 0.00 0.00 3.96
2965 6204 9.712305 ATAATATCCTACTTAATATCCGCATGC 57.288 33.333 7.91 7.91 0.00 4.06
2991 6230 9.373603 AGTACTAATCACATAATAACACGCAAA 57.626 29.630 0.00 0.00 0.00 3.68
2992 6231 8.936070 AGTACTAATCACATAATAACACGCAA 57.064 30.769 0.00 0.00 0.00 4.85
3015 6254 8.694540 TGCAGTTAATTTCATGCCAAATATAGT 58.305 29.630 6.13 0.00 37.89 2.12
3016 6255 8.971321 GTGCAGTTAATTTCATGCCAAATATAG 58.029 33.333 0.00 0.00 37.89 1.31
3017 6256 7.647318 CGTGCAGTTAATTTCATGCCAAATATA 59.353 33.333 0.00 0.00 37.89 0.86
3018 6257 6.476380 CGTGCAGTTAATTTCATGCCAAATAT 59.524 34.615 0.00 0.00 37.89 1.28
3019 6258 5.804473 CGTGCAGTTAATTTCATGCCAAATA 59.196 36.000 0.00 0.00 37.89 1.40
3020 6259 4.626604 CGTGCAGTTAATTTCATGCCAAAT 59.373 37.500 0.00 0.00 37.89 2.32
3021 6260 3.986572 CGTGCAGTTAATTTCATGCCAAA 59.013 39.130 0.00 0.00 37.89 3.28
3022 6261 3.573598 CGTGCAGTTAATTTCATGCCAA 58.426 40.909 0.00 0.00 37.89 4.52
3023 6262 2.670789 GCGTGCAGTTAATTTCATGCCA 60.671 45.455 3.91 0.00 37.89 4.92
3024 6263 1.919918 GCGTGCAGTTAATTTCATGCC 59.080 47.619 3.91 0.00 37.89 4.40
3025 6264 2.867429 AGCGTGCAGTTAATTTCATGC 58.133 42.857 6.69 6.69 40.63 4.06
3026 6265 5.002468 CGTTTAGCGTGCAGTTAATTTCATG 59.998 40.000 0.00 0.00 35.54 3.07
3027 6266 5.086058 CGTTTAGCGTGCAGTTAATTTCAT 58.914 37.500 0.00 0.00 35.54 2.57
3028 6267 4.459606 CGTTTAGCGTGCAGTTAATTTCA 58.540 39.130 0.00 0.00 35.54 2.69
3043 6282 0.234884 AAGCGCTCAACACGTTTAGC 59.765 50.000 12.06 6.11 36.68 3.09
3044 6283 1.525197 TCAAGCGCTCAACACGTTTAG 59.475 47.619 12.06 0.00 32.54 1.85
3045 6284 1.259507 GTCAAGCGCTCAACACGTTTA 59.740 47.619 12.06 0.00 32.54 2.01
3046 6285 0.027586 GTCAAGCGCTCAACACGTTT 59.972 50.000 12.06 0.00 34.13 3.60
3047 6286 1.087202 TGTCAAGCGCTCAACACGTT 61.087 50.000 12.06 0.00 0.00 3.99
3048 6287 0.880278 ATGTCAAGCGCTCAACACGT 60.880 50.000 22.50 10.87 0.00 4.49
3049 6288 0.235665 AATGTCAAGCGCTCAACACG 59.764 50.000 22.50 4.19 0.00 4.49
3050 6289 1.264020 TCAATGTCAAGCGCTCAACAC 59.736 47.619 22.50 12.53 0.00 3.32
3051 6290 1.592064 TCAATGTCAAGCGCTCAACA 58.408 45.000 22.35 22.35 0.00 3.33
3052 6291 2.578495 CTTCAATGTCAAGCGCTCAAC 58.422 47.619 12.06 13.04 0.00 3.18
3053 6292 1.069022 GCTTCAATGTCAAGCGCTCAA 60.069 47.619 12.06 0.00 37.14 3.02
3054 6293 0.518636 GCTTCAATGTCAAGCGCTCA 59.481 50.000 12.06 4.70 37.14 4.26
3055 6294 3.302968 GCTTCAATGTCAAGCGCTC 57.697 52.632 12.06 0.00 37.14 5.03
3059 6298 3.373439 CCTAGACTGCTTCAATGTCAAGC 59.627 47.826 0.33 0.33 45.59 4.01
3060 6299 4.573900 ACCTAGACTGCTTCAATGTCAAG 58.426 43.478 0.00 0.00 33.56 3.02
3061 6300 4.569943 GACCTAGACTGCTTCAATGTCAA 58.430 43.478 0.00 0.00 33.56 3.18
3062 6301 3.367395 CGACCTAGACTGCTTCAATGTCA 60.367 47.826 0.00 0.00 33.56 3.58
3063 6302 3.182967 CGACCTAGACTGCTTCAATGTC 58.817 50.000 0.00 0.00 0.00 3.06
3064 6303 2.563179 ACGACCTAGACTGCTTCAATGT 59.437 45.455 0.00 0.00 0.00 2.71
3065 6304 3.238108 ACGACCTAGACTGCTTCAATG 57.762 47.619 0.00 0.00 0.00 2.82
3066 6305 3.589988 CAACGACCTAGACTGCTTCAAT 58.410 45.455 0.00 0.00 0.00 2.57
3067 6306 2.288825 CCAACGACCTAGACTGCTTCAA 60.289 50.000 0.00 0.00 0.00 2.69
3068 6307 1.272490 CCAACGACCTAGACTGCTTCA 59.728 52.381 0.00 0.00 0.00 3.02
3069 6308 1.544691 TCCAACGACCTAGACTGCTTC 59.455 52.381 0.00 0.00 0.00 3.86
3070 6309 1.629043 TCCAACGACCTAGACTGCTT 58.371 50.000 0.00 0.00 0.00 3.91
3071 6310 1.853963 ATCCAACGACCTAGACTGCT 58.146 50.000 0.00 0.00 0.00 4.24
3072 6311 2.094182 TCAATCCAACGACCTAGACTGC 60.094 50.000 0.00 0.00 0.00 4.40
3073 6312 3.056821 TGTCAATCCAACGACCTAGACTG 60.057 47.826 0.00 0.00 0.00 3.51
3074 6313 3.162666 TGTCAATCCAACGACCTAGACT 58.837 45.455 0.00 0.00 0.00 3.24
3075 6314 3.587797 TGTCAATCCAACGACCTAGAC 57.412 47.619 0.00 0.00 0.00 2.59
3076 6315 3.767131 TCATGTCAATCCAACGACCTAGA 59.233 43.478 0.00 0.00 0.00 2.43
3077 6316 4.123497 TCATGTCAATCCAACGACCTAG 57.877 45.455 0.00 0.00 0.00 3.02
3078 6317 4.753516 ATCATGTCAATCCAACGACCTA 57.246 40.909 0.00 0.00 0.00 3.08
3079 6318 3.634397 ATCATGTCAATCCAACGACCT 57.366 42.857 0.00 0.00 0.00 3.85
3080 6319 4.155826 TCAAATCATGTCAATCCAACGACC 59.844 41.667 0.00 0.00 0.00 4.79
3081 6320 5.295431 TCAAATCATGTCAATCCAACGAC 57.705 39.130 0.00 0.00 0.00 4.34
3082 6321 5.106197 CCTTCAAATCATGTCAATCCAACGA 60.106 40.000 0.00 0.00 0.00 3.85
3083 6322 5.097529 CCTTCAAATCATGTCAATCCAACG 58.902 41.667 0.00 0.00 0.00 4.10
3084 6323 4.866486 GCCTTCAAATCATGTCAATCCAAC 59.134 41.667 0.00 0.00 0.00 3.77
3085 6324 4.081531 GGCCTTCAAATCATGTCAATCCAA 60.082 41.667 0.00 0.00 0.00 3.53
3086 6325 3.448301 GGCCTTCAAATCATGTCAATCCA 59.552 43.478 0.00 0.00 0.00 3.41
3087 6326 3.489738 CGGCCTTCAAATCATGTCAATCC 60.490 47.826 0.00 0.00 0.00 3.01
3088 6327 3.378112 TCGGCCTTCAAATCATGTCAATC 59.622 43.478 0.00 0.00 0.00 2.67
3089 6328 3.355378 TCGGCCTTCAAATCATGTCAAT 58.645 40.909 0.00 0.00 0.00 2.57
3090 6329 2.749076 CTCGGCCTTCAAATCATGTCAA 59.251 45.455 0.00 0.00 0.00 3.18
3091 6330 2.027285 TCTCGGCCTTCAAATCATGTCA 60.027 45.455 0.00 0.00 0.00 3.58
3092 6331 2.632377 TCTCGGCCTTCAAATCATGTC 58.368 47.619 0.00 0.00 0.00 3.06
3093 6332 2.787473 TCTCGGCCTTCAAATCATGT 57.213 45.000 0.00 0.00 0.00 3.21
3094 6333 5.756195 TTAATCTCGGCCTTCAAATCATG 57.244 39.130 0.00 0.00 0.00 3.07
3095 6334 6.239120 CCAATTAATCTCGGCCTTCAAATCAT 60.239 38.462 0.00 0.00 0.00 2.45
3096 6335 5.067674 CCAATTAATCTCGGCCTTCAAATCA 59.932 40.000 0.00 0.00 0.00 2.57
3097 6336 5.299279 TCCAATTAATCTCGGCCTTCAAATC 59.701 40.000 0.00 0.00 0.00 2.17
3098 6337 5.200483 TCCAATTAATCTCGGCCTTCAAAT 58.800 37.500 0.00 0.00 0.00 2.32
3099 6338 4.594970 TCCAATTAATCTCGGCCTTCAAA 58.405 39.130 0.00 0.00 0.00 2.69
3100 6339 4.229304 TCCAATTAATCTCGGCCTTCAA 57.771 40.909 0.00 0.00 0.00 2.69
3101 6340 3.924114 TCCAATTAATCTCGGCCTTCA 57.076 42.857 0.00 0.00 0.00 3.02
3102 6341 4.453819 CAGATCCAATTAATCTCGGCCTTC 59.546 45.833 0.00 0.00 31.05 3.46
3103 6342 4.392940 CAGATCCAATTAATCTCGGCCTT 58.607 43.478 0.00 0.00 31.05 4.35
3104 6343 3.808618 GCAGATCCAATTAATCTCGGCCT 60.809 47.826 0.00 0.00 31.05 5.19
3105 6344 2.485814 GCAGATCCAATTAATCTCGGCC 59.514 50.000 0.00 0.00 31.05 6.13
3106 6345 2.485814 GGCAGATCCAATTAATCTCGGC 59.514 50.000 0.62 2.99 31.05 5.54
3107 6346 3.077359 GGGCAGATCCAATTAATCTCGG 58.923 50.000 0.62 0.00 36.21 4.63
3108 6347 3.077359 GGGGCAGATCCAATTAATCTCG 58.923 50.000 0.62 0.00 36.21 4.04
3109 6348 4.379302 AGGGGCAGATCCAATTAATCTC 57.621 45.455 0.62 0.00 36.21 2.75
3110 6349 4.821532 AAGGGGCAGATCCAATTAATCT 57.178 40.909 0.00 0.00 36.21 2.40
3111 6350 4.039609 CCAAAGGGGCAGATCCAATTAATC 59.960 45.833 0.00 0.00 36.21 1.75
3112 6351 3.969312 CCAAAGGGGCAGATCCAATTAAT 59.031 43.478 0.00 0.00 36.21 1.40
3113 6352 3.373830 CCAAAGGGGCAGATCCAATTAA 58.626 45.455 0.00 0.00 36.21 1.40
3114 6353 3.030873 CCAAAGGGGCAGATCCAATTA 57.969 47.619 0.00 0.00 36.21 1.40
3115 6354 1.870064 CCAAAGGGGCAGATCCAATT 58.130 50.000 0.00 0.00 36.21 2.32
3116 6355 3.621419 CCAAAGGGGCAGATCCAAT 57.379 52.632 0.00 0.00 36.21 3.16
3143 6382 9.094578 AGTTGTCTGCTGTATCTATACCAATAT 57.905 33.333 0.00 0.00 32.33 1.28
3144 6383 8.478775 AGTTGTCTGCTGTATCTATACCAATA 57.521 34.615 0.00 0.00 32.33 1.90
3145 6384 7.366847 AGTTGTCTGCTGTATCTATACCAAT 57.633 36.000 0.00 0.00 32.33 3.16
3146 6385 6.791867 AGTTGTCTGCTGTATCTATACCAA 57.208 37.500 0.00 0.00 32.33 3.67
3147 6386 6.791867 AAGTTGTCTGCTGTATCTATACCA 57.208 37.500 0.00 0.00 32.33 3.25
3156 6395 9.891828 CAACAATTTATTAAGTTGTCTGCTGTA 57.108 29.630 15.14 0.00 37.25 2.74
3157 6396 8.801715 CAACAATTTATTAAGTTGTCTGCTGT 57.198 30.769 15.14 0.00 37.25 4.40
3296 6535 3.745797 GCAGACAACTGAGAAGGGAAGTT 60.746 47.826 0.00 0.00 46.03 2.66
3309 6551 4.273318 AGAAGGAAGTTTTGCAGACAACT 58.727 39.130 5.28 4.08 34.87 3.16
3335 6577 4.539726 TGGAGATTGCTCATATTGCCTTT 58.460 39.130 0.00 0.00 43.14 3.11
3339 6581 4.379603 GCAGATGGAGATTGCTCATATTGC 60.380 45.833 0.00 0.00 43.14 3.56
3340 6582 4.760204 TGCAGATGGAGATTGCTCATATTG 59.240 41.667 0.00 0.00 43.14 1.90
3341 6583 4.981812 TGCAGATGGAGATTGCTCATATT 58.018 39.130 0.00 0.00 43.14 1.28
3343 6585 4.426736 TTGCAGATGGAGATTGCTCATA 57.573 40.909 0.00 0.00 43.14 2.15
3344 6586 3.292492 TTGCAGATGGAGATTGCTCAT 57.708 42.857 0.00 0.00 43.14 2.90
3345 6587 2.793288 TTGCAGATGGAGATTGCTCA 57.207 45.000 0.00 0.00 43.14 4.26
3346 6588 3.442977 AGTTTTGCAGATGGAGATTGCTC 59.557 43.478 0.00 0.00 38.60 4.26
3347 6589 3.428532 AGTTTTGCAGATGGAGATTGCT 58.571 40.909 0.00 0.00 38.60 3.91
3351 6593 4.313020 AGGAAGTTTTGCAGATGGAGAT 57.687 40.909 0.00 0.00 0.00 2.75
3371 6614 6.932356 TGCTCATATTGCCTTTTAGAGAAG 57.068 37.500 0.00 0.00 0.00 2.85
3374 6617 7.308469 GGAGATTGCTCATATTGCCTTTTAGAG 60.308 40.741 0.00 0.00 43.14 2.43
3375 6618 6.488006 GGAGATTGCTCATATTGCCTTTTAGA 59.512 38.462 0.00 0.00 43.14 2.10
3376 6619 6.263842 TGGAGATTGCTCATATTGCCTTTTAG 59.736 38.462 0.00 0.00 43.14 1.85
3377 6620 6.128486 TGGAGATTGCTCATATTGCCTTTTA 58.872 36.000 0.00 0.00 43.14 1.52
3378 6621 4.957954 TGGAGATTGCTCATATTGCCTTTT 59.042 37.500 0.00 0.00 43.14 2.27
3379 6622 4.539726 TGGAGATTGCTCATATTGCCTTT 58.460 39.130 0.00 0.00 43.14 3.11
3380 6623 4.174704 TGGAGATTGCTCATATTGCCTT 57.825 40.909 0.00 0.00 43.14 4.35
3381 6624 3.870538 TGGAGATTGCTCATATTGCCT 57.129 42.857 0.00 0.00 43.14 4.75
3382 6625 4.156190 CAGATGGAGATTGCTCATATTGCC 59.844 45.833 0.00 0.00 43.14 4.52
3383 6626 4.379603 GCAGATGGAGATTGCTCATATTGC 60.380 45.833 0.00 0.00 43.14 3.56
3384 6627 4.760204 TGCAGATGGAGATTGCTCATATTG 59.240 41.667 0.00 0.00 43.14 1.90
3385 6628 4.981812 TGCAGATGGAGATTGCTCATATT 58.018 39.130 0.00 0.00 43.14 1.28
3386 6629 4.635699 TGCAGATGGAGATTGCTCATAT 57.364 40.909 0.00 0.00 43.14 1.78
3387 6630 4.426736 TTGCAGATGGAGATTGCTCATA 57.573 40.909 0.00 0.00 43.14 2.15
3388 6631 3.292492 TTGCAGATGGAGATTGCTCAT 57.708 42.857 0.00 0.00 43.14 2.90
3389 6632 2.793288 TTGCAGATGGAGATTGCTCA 57.207 45.000 0.00 0.00 43.14 4.26
3390 6633 4.338682 AGATTTTGCAGATGGAGATTGCTC 59.661 41.667 0.00 0.00 38.60 4.26
3391 6634 4.279145 AGATTTTGCAGATGGAGATTGCT 58.721 39.130 0.00 0.00 38.60 3.91
3392 6635 4.650754 AGATTTTGCAGATGGAGATTGC 57.349 40.909 0.00 0.00 38.30 3.56
3393 6636 7.563888 TCTTAGATTTTGCAGATGGAGATTG 57.436 36.000 0.00 0.00 0.00 2.67
3394 6637 9.504708 CTATCTTAGATTTTGCAGATGGAGATT 57.495 33.333 0.00 0.00 0.00 2.40
3395 6638 8.878211 TCTATCTTAGATTTTGCAGATGGAGAT 58.122 33.333 0.00 0.00 30.67 2.75
3396 6639 8.147058 GTCTATCTTAGATTTTGCAGATGGAGA 58.853 37.037 0.00 0.00 34.87 3.71
3397 6640 8.149647 AGTCTATCTTAGATTTTGCAGATGGAG 58.850 37.037 0.00 0.00 34.87 3.86
3398 6641 8.027524 AGTCTATCTTAGATTTTGCAGATGGA 57.972 34.615 0.00 0.00 37.13 3.41
3399 6642 8.557864 CAAGTCTATCTTAGATTTTGCAGATGG 58.442 37.037 0.00 0.00 37.13 3.51
3400 6643 9.107177 ACAAGTCTATCTTAGATTTTGCAGATG 57.893 33.333 0.00 0.00 36.52 2.90
3401 6644 9.678260 AACAAGTCTATCTTAGATTTTGCAGAT 57.322 29.630 0.00 0.00 36.52 2.90
3402 6645 9.507329 AAACAAGTCTATCTTAGATTTTGCAGA 57.493 29.630 0.00 0.00 36.52 4.26
3403 6646 9.552114 CAAACAAGTCTATCTTAGATTTTGCAG 57.448 33.333 0.00 0.00 36.52 4.41
3404 6647 9.066892 ACAAACAAGTCTATCTTAGATTTTGCA 57.933 29.630 0.00 0.00 36.52 4.08
3405 6648 9.548208 GACAAACAAGTCTATCTTAGATTTTGC 57.452 33.333 0.00 0.00 36.52 3.68
3406 6649 9.746711 CGACAAACAAGTCTATCTTAGATTTTG 57.253 33.333 0.00 5.97 37.81 2.44
3407 6650 8.936864 CCGACAAACAAGTCTATCTTAGATTTT 58.063 33.333 0.00 0.00 37.13 1.82
3408 6651 8.095169 ACCGACAAACAAGTCTATCTTAGATTT 58.905 33.333 0.00 0.00 37.13 2.17
3409 6652 7.612677 ACCGACAAACAAGTCTATCTTAGATT 58.387 34.615 0.00 0.00 37.13 2.40
3410 6653 7.171630 ACCGACAAACAAGTCTATCTTAGAT 57.828 36.000 0.00 0.00 37.13 1.98
3411 6654 6.585695 ACCGACAAACAAGTCTATCTTAGA 57.414 37.500 0.00 0.00 36.38 2.10
3412 6655 6.866770 TGAACCGACAAACAAGTCTATCTTAG 59.133 38.462 0.00 0.00 36.38 2.18
3413 6656 6.751157 TGAACCGACAAACAAGTCTATCTTA 58.249 36.000 0.00 0.00 36.38 2.10
3414 6657 5.607477 TGAACCGACAAACAAGTCTATCTT 58.393 37.500 0.00 0.00 36.38 2.40
3415 6658 5.209818 TGAACCGACAAACAAGTCTATCT 57.790 39.130 0.00 0.00 36.38 1.98
3416 6659 6.481954 AATGAACCGACAAACAAGTCTATC 57.518 37.500 0.00 0.00 36.38 2.08
3417 6660 7.972832 TTAATGAACCGACAAACAAGTCTAT 57.027 32.000 0.00 0.00 36.38 1.98
3418 6661 7.572353 GCATTAATGAACCGACAAACAAGTCTA 60.572 37.037 19.73 0.00 36.38 2.59
3419 6662 6.668323 CATTAATGAACCGACAAACAAGTCT 58.332 36.000 10.04 0.00 36.38 3.24
3463 6706 4.215399 TGACGAAAATTTAGGACTGCAAGG 59.785 41.667 0.00 0.00 39.30 3.61
3812 7059 3.040147 TCTTCTTTCCCAAGTGCTACG 57.960 47.619 0.00 0.00 0.00 3.51
3896 7155 1.472904 CGTCTTGCCATCTGATCTGCT 60.473 52.381 9.35 0.00 0.00 4.24
3897 7156 0.935898 CGTCTTGCCATCTGATCTGC 59.064 55.000 0.00 2.53 0.00 4.26
3898 7157 2.100418 TCTCGTCTTGCCATCTGATCTG 59.900 50.000 0.00 0.00 0.00 2.90
3899 7158 2.382882 TCTCGTCTTGCCATCTGATCT 58.617 47.619 0.00 0.00 0.00 2.75
3900 7159 2.879002 TCTCGTCTTGCCATCTGATC 57.121 50.000 0.00 0.00 0.00 2.92
3901 7160 2.158986 CCTTCTCGTCTTGCCATCTGAT 60.159 50.000 0.00 0.00 0.00 2.90
3902 7161 1.205655 CCTTCTCGTCTTGCCATCTGA 59.794 52.381 0.00 0.00 0.00 3.27
3903 7162 1.066573 ACCTTCTCGTCTTGCCATCTG 60.067 52.381 0.00 0.00 0.00 2.90
3904 7163 1.205893 GACCTTCTCGTCTTGCCATCT 59.794 52.381 0.00 0.00 0.00 2.90
3905 7164 1.646189 GACCTTCTCGTCTTGCCATC 58.354 55.000 0.00 0.00 0.00 3.51
3906 7165 0.250513 GGACCTTCTCGTCTTGCCAT 59.749 55.000 0.00 0.00 33.07 4.40
3907 7166 1.671742 GGACCTTCTCGTCTTGCCA 59.328 57.895 0.00 0.00 33.07 4.92
3908 7167 1.079057 GGGACCTTCTCGTCTTGCC 60.079 63.158 0.00 0.00 33.07 4.52
3909 7168 0.321996 AAGGGACCTTCTCGTCTTGC 59.678 55.000 0.00 0.00 33.07 4.01
3910 7169 1.344763 ACAAGGGACCTTCTCGTCTTG 59.655 52.381 0.00 2.33 37.10 3.02
3935 7194 3.488553 CGCTGTATAGTCGGTCATGTTGA 60.489 47.826 0.00 0.00 0.00 3.18
3939 7198 1.409412 GCGCTGTATAGTCGGTCATG 58.591 55.000 0.00 0.00 0.00 3.07
3940 7199 0.314302 GGCGCTGTATAGTCGGTCAT 59.686 55.000 7.64 0.00 0.00 3.06
3941 7200 0.750546 AGGCGCTGTATAGTCGGTCA 60.751 55.000 7.64 0.00 0.00 4.02
3942 7201 0.317938 CAGGCGCTGTATAGTCGGTC 60.318 60.000 7.64 0.00 0.00 4.79
3943 7202 1.734137 CAGGCGCTGTATAGTCGGT 59.266 57.895 7.64 0.00 0.00 4.69
3944 7203 1.661821 GCAGGCGCTGTATAGTCGG 60.662 63.158 7.64 0.00 33.43 4.79
3945 7204 1.661821 GGCAGGCGCTGTATAGTCG 60.662 63.158 7.64 0.33 38.60 4.18
3946 7205 0.598680 CAGGCAGGCGCTGTATAGTC 60.599 60.000 7.64 0.00 38.60 2.59
3963 7222 2.203972 CTTGGGTGTCGCAATGGCAG 62.204 60.000 0.00 0.00 41.24 4.85
3966 7225 2.342650 CCCTTGGGTGTCGCAATGG 61.343 63.158 0.00 6.51 36.28 3.16
3985 7244 3.390135 TGCCGACTTAACAGAGAACAAG 58.610 45.455 0.00 0.00 0.00 3.16
3989 7248 4.794278 TGTATGCCGACTTAACAGAGAA 57.206 40.909 0.00 0.00 0.00 2.87
4054 7313 2.159382 GGCGGTTCTTTTTCCAGATCA 58.841 47.619 0.00 0.00 0.00 2.92
4181 7448 4.954933 TGCTCCGGCAAGTTATCC 57.045 55.556 0.00 0.00 46.36 2.59
4275 7573 1.811965 CTCGTTGGCATTCACCATTCA 59.188 47.619 0.00 0.00 40.13 2.57
4276 7574 1.812571 ACTCGTTGGCATTCACCATTC 59.187 47.619 0.00 0.00 40.13 2.67
4277 7575 1.909700 ACTCGTTGGCATTCACCATT 58.090 45.000 0.00 0.00 40.13 3.16
4278 7576 1.812571 GAACTCGTTGGCATTCACCAT 59.187 47.619 0.00 0.00 40.13 3.55
4279 7577 1.234821 GAACTCGTTGGCATTCACCA 58.765 50.000 0.00 0.00 38.16 4.17
4280 7578 1.069227 GTGAACTCGTTGGCATTCACC 60.069 52.381 16.38 3.31 43.28 4.02
4281 7579 1.069227 GGTGAACTCGTTGGCATTCAC 60.069 52.381 18.16 18.16 46.61 3.18
4373 7787 7.171337 GTGTTATCATTGCAAATTGTGAAAGGT 59.829 33.333 1.71 0.00 28.06 3.50


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.