Multiple sequence alignment - TraesCS5D01G479000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G479000 chr5D 100.000 6599 0 0 977 7575 517429749 517436347 0.000000e+00 12187.0
1 TraesCS5D01G479000 chr5D 100.000 663 0 0 1 663 517428773 517429435 0.000000e+00 1225.0
2 TraesCS5D01G479000 chr5D 90.173 173 17 0 2456 2628 517431054 517431226 7.650000e-55 226.0
3 TraesCS5D01G479000 chr5B 95.501 5268 169 29 1081 6319 650017310 650022538 0.000000e+00 8353.0
4 TraesCS5D01G479000 chr5B 87.883 685 61 13 2030 2700 589807397 589806721 0.000000e+00 785.0
5 TraesCS5D01G479000 chr5B 89.484 523 40 11 6701 7220 650022951 650023461 0.000000e+00 647.0
6 TraesCS5D01G479000 chr5B 96.848 349 9 2 6318 6665 650022604 650022951 3.940000e-162 582.0
7 TraesCS5D01G479000 chr5B 91.582 297 24 1 1 297 650016199 650016494 7.080000e-110 409.0
8 TraesCS5D01G479000 chr5B 85.317 252 21 7 7300 7546 650023492 650023732 5.870000e-61 246.0
9 TraesCS5D01G479000 chr5B 90.173 173 17 0 2456 2628 650018495 650018667 7.650000e-55 226.0
10 TraesCS5D01G479000 chr5B 92.784 97 4 3 567 660 650016833 650016929 3.690000e-28 137.0
11 TraesCS5D01G479000 chr5B 100.000 48 0 0 7241 7288 650023461 650023508 1.050000e-13 89.8
12 TraesCS5D01G479000 chr5A 95.208 3026 113 8 2097 5113 644814450 644817452 0.000000e+00 4756.0
13 TraesCS5D01G479000 chr5A 91.765 1275 67 18 6318 7574 644819715 644820969 0.000000e+00 1738.0
14 TraesCS5D01G479000 chr5A 92.205 898 40 15 5445 6319 644818759 644819649 0.000000e+00 1243.0
15 TraesCS5D01G479000 chr5A 85.175 1059 109 31 978 2004 644813022 644814064 0.000000e+00 1042.0
16 TraesCS5D01G479000 chr5A 88.972 671 61 9 2036 2700 493617399 493618062 0.000000e+00 817.0
17 TraesCS5D01G479000 chr5A 85.714 546 39 21 1 541 644812308 644812819 2.400000e-149 540.0
18 TraesCS5D01G479000 chr5A 91.329 173 15 0 2282 2454 493617818 493617990 3.530000e-58 237.0
19 TraesCS5D01G479000 chr5A 91.329 173 15 0 2282 2454 644814804 644814976 3.530000e-58 237.0
20 TraesCS5D01G479000 chr5A 88.439 173 20 0 2456 2628 644814630 644814802 7.700000e-50 209.0
21 TraesCS5D01G479000 chr5A 92.537 134 7 2 5198 5328 644818619 644818752 1.000000e-43 189.0
22 TraesCS5D01G479000 chr5A 96.250 80 1 2 583 660 644812862 644812941 6.170000e-26 130.0
23 TraesCS5D01G479000 chr1A 89.270 671 59 9 2036 2700 372634718 372635381 0.000000e+00 828.0
24 TraesCS5D01G479000 chr1A 86.641 262 28 5 2774 3030 97850082 97849823 4.470000e-72 283.0
25 TraesCS5D01G479000 chr1A 88.235 238 26 1 2788 3023 441824184 441824421 4.470000e-72 283.0
26 TraesCS5D01G479000 chr1A 87.607 234 25 1 2790 3023 372635378 372635607 1.250000e-67 268.0
27 TraesCS5D01G479000 chr1A 86.383 235 32 0 2789 3023 418096514 418096748 2.710000e-64 257.0
28 TraesCS5D01G479000 chr1A 91.908 173 14 0 2282 2454 372635137 372635309 7.590000e-60 243.0
29 TraesCS5D01G479000 chr2A 86.918 451 41 10 2030 2468 52420762 52421206 2.460000e-134 490.0
30 TraesCS5D01G479000 chr2A 90.476 273 22 3 2533 2802 52421202 52421473 2.600000e-94 357.0
31 TraesCS5D01G479000 chr2D 88.793 232 26 0 2792 3023 582496874 582496643 1.240000e-72 285.0
32 TraesCS5D01G479000 chrUn 86.561 253 31 2 2774 3023 194086594 194086846 7.490000e-70 276.0
33 TraesCS5D01G479000 chr7A 86.166 253 32 2 2774 3023 677932389 677932137 3.480000e-68 270.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G479000 chr5D 517428773 517436347 7574 False 6706.000000 12187 100.0000 1 7575 2 chr5D.!!$F2 7574
1 TraesCS5D01G479000 chr5B 650016199 650022538 6339 False 2966.333333 8353 93.2890 1 6319 3 chr5B.!!$F1 6318
2 TraesCS5D01G479000 chr5B 589806721 589807397 676 True 785.000000 785 87.8830 2030 2700 1 chr5B.!!$R1 670
3 TraesCS5D01G479000 chr5B 650018495 650023732 5237 False 358.160000 647 92.3644 2456 7546 5 chr5B.!!$F2 5090
4 TraesCS5D01G479000 chr5A 644812308 644820969 8661 False 1120.444444 4756 90.9580 1 7574 9 chr5A.!!$F2 7573
5 TraesCS5D01G479000 chr5A 493617399 493618062 663 False 527.000000 817 90.1505 2036 2700 2 chr5A.!!$F1 664
6 TraesCS5D01G479000 chr1A 372634718 372635607 889 False 446.333333 828 89.5950 2036 3023 3 chr1A.!!$F3 987
7 TraesCS5D01G479000 chr2A 52420762 52421473 711 False 423.500000 490 88.6970 2030 2802 2 chr2A.!!$F1 772

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
112 113 0.036388 TGTCGGAATTCTCCCACTGC 60.036 55.000 5.23 0.00 38.71 4.40 F
264 266 0.165295 GCGAAGAAAGTTACCACCGC 59.835 55.000 0.00 0.00 34.71 5.68 F
1072 1226 0.098025 CGCTCTCTGTCTCTCGGTTC 59.902 60.000 0.00 0.00 0.00 3.62 F
1315 1475 0.114168 AGGCTCTGAGTGTCTGGTCT 59.886 55.000 6.53 0.00 0.00 3.85 F
2341 2839 0.178995 TCTGGTGCATGCAAAGGACA 60.179 50.000 24.58 14.91 0.00 4.02 F
2342 2840 0.675083 CTGGTGCATGCAAAGGACAA 59.325 50.000 24.58 1.49 0.00 3.18 F
3562 4069 1.733402 CTCTCCTGCACCTAGAGCGG 61.733 65.000 8.50 8.50 38.10 5.52 F
5151 5666 2.715046 TCTCAATTCGATGCCAAGCTT 58.285 42.857 0.00 0.00 0.00 3.74 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1054 1190 0.098025 CGAACCGAGAGACAGAGAGC 59.902 60.000 0.00 0.0 0.00 4.09 R
2152 2641 0.394080 GCAGCAGAGGAAAGAGCCAT 60.394 55.000 0.00 0.0 0.00 4.40 R
2820 3327 1.144969 CGAGCTTCCTTTACACGCAA 58.855 50.000 0.00 0.0 0.00 4.85 R
3113 3620 1.899814 TCAGGTACATGGTCACTGGTC 59.100 52.381 7.81 0.0 0.00 4.02 R
3562 4069 3.270877 AGGCAACCATTTCTGTCGATAC 58.729 45.455 0.00 0.0 37.17 2.24 R
3793 4300 3.520721 TCATTCTTCAGAGATTCCCTGCA 59.479 43.478 0.00 0.0 0.00 4.41 R
5384 7008 1.933853 CGGCTCGGATTCTTACAAAGG 59.066 52.381 0.00 0.0 0.00 3.11 R
6729 8526 0.515127 CACCATTACGCACGCTTTGA 59.485 50.000 0.00 0.0 0.00 2.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
112 113 0.036388 TGTCGGAATTCTCCCACTGC 60.036 55.000 5.23 0.00 38.71 4.40
118 119 1.836802 GAATTCTCCCACTGCCTCTCT 59.163 52.381 0.00 0.00 0.00 3.10
130 131 2.106166 CTGCCTCTCTGATAATTGGCCT 59.894 50.000 3.32 0.00 39.60 5.19
168 169 6.325919 TGTTAATTTTCGAGGCAGAAATGT 57.674 33.333 8.57 3.84 39.52 2.71
264 266 0.165295 GCGAAGAAAGTTACCACCGC 59.835 55.000 0.00 0.00 34.71 5.68
270 272 1.529865 GAAAGTTACCACCGCTGACAC 59.470 52.381 0.00 0.00 0.00 3.67
364 393 8.137210 TCCTTTTTAAAAGCAAATAAGTGTGC 57.863 30.769 11.59 0.00 41.22 4.57
365 394 7.043059 TCCTTTTTAAAAGCAAATAAGTGTGCG 60.043 33.333 11.59 0.00 45.62 5.34
366 395 7.043059 CCTTTTTAAAAGCAAATAAGTGTGCGA 60.043 33.333 11.59 0.00 45.62 5.10
367 396 7.757097 TTTTAAAAGCAAATAAGTGTGCGAA 57.243 28.000 0.00 0.00 45.62 4.70
368 397 6.984740 TTAAAAGCAAATAAGTGTGCGAAG 57.015 33.333 0.00 0.00 45.62 3.79
369 398 3.559238 AAGCAAATAAGTGTGCGAAGG 57.441 42.857 0.00 0.00 45.62 3.46
370 399 2.778299 AGCAAATAAGTGTGCGAAGGA 58.222 42.857 0.00 0.00 45.62 3.36
371 400 3.146066 AGCAAATAAGTGTGCGAAGGAA 58.854 40.909 0.00 0.00 45.62 3.36
372 401 3.568007 AGCAAATAAGTGTGCGAAGGAAA 59.432 39.130 0.00 0.00 45.62 3.13
373 402 4.218417 AGCAAATAAGTGTGCGAAGGAAAT 59.782 37.500 0.00 0.00 45.62 2.17
374 403 4.923281 GCAAATAAGTGTGCGAAGGAAATT 59.077 37.500 0.00 0.00 0.00 1.82
375 404 5.164061 GCAAATAAGTGTGCGAAGGAAATTG 60.164 40.000 0.00 0.00 0.00 2.32
379 408 4.483476 AGTGTGCGAAGGAAATTGTTAC 57.517 40.909 0.00 0.00 0.00 2.50
380 409 3.252458 AGTGTGCGAAGGAAATTGTTACC 59.748 43.478 0.00 0.00 0.00 2.85
381 410 3.252458 GTGTGCGAAGGAAATTGTTACCT 59.748 43.478 0.00 0.00 35.36 3.08
382 411 3.500680 TGTGCGAAGGAAATTGTTACCTC 59.499 43.478 0.00 0.00 33.16 3.85
383 412 3.078837 TGCGAAGGAAATTGTTACCTCC 58.921 45.455 0.00 0.00 33.16 4.30
384 413 3.244770 TGCGAAGGAAATTGTTACCTCCT 60.245 43.478 0.00 0.00 40.10 3.69
386 415 4.217767 GCGAAGGAAATTGTTACCTCCTTT 59.782 41.667 8.00 0.00 46.08 3.11
387 416 5.278808 GCGAAGGAAATTGTTACCTCCTTTT 60.279 40.000 8.00 0.00 46.08 2.27
388 417 6.737622 GCGAAGGAAATTGTTACCTCCTTTTT 60.738 38.462 8.00 0.00 46.08 1.94
443 515 4.440758 CGTGCAGTAACAAATTTCCAACAG 59.559 41.667 0.00 0.00 0.00 3.16
466 570 2.241176 AGGCACCCGAAAATAGATCCAA 59.759 45.455 0.00 0.00 0.00 3.53
467 571 3.020984 GGCACCCGAAAATAGATCCAAA 58.979 45.455 0.00 0.00 0.00 3.28
468 572 3.066760 GGCACCCGAAAATAGATCCAAAG 59.933 47.826 0.00 0.00 0.00 2.77
479 583 5.878406 ATAGATCCAAAGGAAGATGACGT 57.122 39.130 0.00 0.00 34.34 4.34
541 646 2.166459 TCAGACATTACAGCGGGAAGAG 59.834 50.000 0.00 0.00 0.00 2.85
542 647 2.093973 CAGACATTACAGCGGGAAGAGT 60.094 50.000 0.00 0.00 0.00 3.24
544 649 2.930682 GACATTACAGCGGGAAGAGTTC 59.069 50.000 0.00 0.00 0.00 3.01
593 729 5.221322 GGAAGAAAGACCTTGCTGTCATTTT 60.221 40.000 4.79 0.00 37.73 1.82
1041 1177 3.515286 CCGCGCTTCTCCGAGGTA 61.515 66.667 5.56 0.00 42.21 3.08
1042 1178 2.488355 CGCGCTTCTCCGAGGTAA 59.512 61.111 5.56 0.00 0.00 2.85
1044 1180 1.518792 GCGCTTCTCCGAGGTAACC 60.519 63.158 0.00 0.00 37.17 2.85
1046 1182 1.521141 GCTTCTCCGAGGTAACCCC 59.479 63.158 0.00 0.00 37.17 4.95
1047 1183 1.814527 CTTCTCCGAGGTAACCCCG 59.185 63.158 0.00 0.00 38.74 5.73
1050 1186 2.362889 TCCGAGGTAACCCCGTCC 60.363 66.667 0.00 0.00 38.74 4.79
1052 1188 3.464494 CGAGGTAACCCCGTCCCC 61.464 72.222 0.00 0.00 38.74 4.81
1072 1226 0.098025 CGCTCTCTGTCTCTCGGTTC 59.902 60.000 0.00 0.00 0.00 3.62
1085 1239 4.024545 GGTTCGGCGGGAGGGAAA 62.025 66.667 7.21 0.00 0.00 3.13
1086 1240 2.745100 GTTCGGCGGGAGGGAAAC 60.745 66.667 7.21 0.00 0.00 2.78
1089 1246 3.762247 CGGCGGGAGGGAAACGTA 61.762 66.667 0.00 0.00 0.00 3.57
1124 1284 1.219393 CCCTCTTCTGACGCCCTTC 59.781 63.158 0.00 0.00 0.00 3.46
1261 1421 6.151817 GCCTTGTGAGGTGATTTTCTATTCTT 59.848 38.462 0.00 0.00 45.44 2.52
1273 1433 8.181573 TGATTTTCTATTCTTATTTGTGCGTCC 58.818 33.333 0.00 0.00 0.00 4.79
1277 1437 7.624360 TCTATTCTTATTTGTGCGTCCATTT 57.376 32.000 0.00 0.00 0.00 2.32
1279 1439 4.433186 TCTTATTTGTGCGTCCATTTGG 57.567 40.909 0.00 0.00 0.00 3.28
1280 1440 3.823873 TCTTATTTGTGCGTCCATTTGGT 59.176 39.130 0.00 0.00 36.34 3.67
1281 1441 2.437200 ATTTGTGCGTCCATTTGGTG 57.563 45.000 0.00 0.00 36.34 4.17
1312 1472 2.890311 CCTATAGGCTCTGAGTGTCTGG 59.110 54.545 5.67 0.00 0.00 3.86
1314 1474 1.840737 TAGGCTCTGAGTGTCTGGTC 58.159 55.000 6.53 0.00 0.00 4.02
1315 1475 0.114168 AGGCTCTGAGTGTCTGGTCT 59.886 55.000 6.53 0.00 0.00 3.85
1316 1476 0.246086 GGCTCTGAGTGTCTGGTCTG 59.754 60.000 6.53 0.00 0.00 3.51
1367 1527 4.100189 AGCCTTGCTATATTTCAGTCGAGT 59.900 41.667 0.00 0.00 36.99 4.18
1373 1533 5.805486 TGCTATATTTCAGTCGAGTGTGTTC 59.195 40.000 19.41 3.84 0.00 3.18
1375 1535 2.234300 TTTCAGTCGAGTGTGTTCCC 57.766 50.000 19.41 0.00 0.00 3.97
1377 1537 1.372997 CAGTCGAGTGTGTTCCCGG 60.373 63.158 12.29 0.00 0.00 5.73
1421 1582 9.868277 TTCAGTTATTATTTTTGCCTAACCATG 57.132 29.630 0.00 0.00 0.00 3.66
1429 1590 0.611618 TGCCTAACCATGCCACCTTG 60.612 55.000 0.00 0.00 0.00 3.61
1457 1619 2.887152 ACAACTGAAACTGGAGATTGGC 59.113 45.455 0.00 0.00 0.00 4.52
1461 1623 2.686915 CTGAAACTGGAGATTGGCCATC 59.313 50.000 6.09 6.67 34.33 3.51
1466 1628 0.468226 TGGAGATTGGCCATCGGTAC 59.532 55.000 6.09 0.00 36.93 3.34
1505 1667 5.113383 TGAATTGGATCTGAATGCATTTGC 58.887 37.500 14.33 3.29 42.50 3.68
1575 1737 4.654091 TCTGATCTGATGCGATGTGTTA 57.346 40.909 0.00 0.00 0.00 2.41
1697 1859 1.740380 CGTCTGCATTTGTCGGGAGAT 60.740 52.381 0.00 0.00 43.27 2.75
1703 1865 2.555199 CATTTGTCGGGAGATGAGGAC 58.445 52.381 0.00 0.00 43.27 3.85
1720 1882 1.611673 GGACACACCTGCTGCAAGTAT 60.612 52.381 3.17 0.00 33.53 2.12
1770 1932 5.808042 TTCTTGATGCTAATCACTGAAGC 57.192 39.130 0.00 0.00 42.60 3.86
1776 1938 4.551702 TGCTAATCACTGAAGCTTGGTA 57.448 40.909 2.10 0.00 37.16 3.25
1778 1940 5.312895 TGCTAATCACTGAAGCTTGGTAAA 58.687 37.500 2.10 0.00 37.16 2.01
1779 1941 5.181245 TGCTAATCACTGAAGCTTGGTAAAC 59.819 40.000 2.10 0.00 37.16 2.01
1789 1951 6.593807 TGAAGCTTGGTAAACACTTAGGTTA 58.406 36.000 2.10 0.00 0.00 2.85
1838 2000 8.768501 AATCAGAAGATGGTAGTACATGTAGA 57.231 34.615 5.62 0.00 33.90 2.59
1868 2036 6.865205 GCCTTTAATGATTCAATCCTGCATAC 59.135 38.462 0.00 0.00 0.00 2.39
1871 2039 7.894753 TTAATGATTCAATCCTGCATACCAA 57.105 32.000 0.00 0.00 0.00 3.67
1880 2048 6.487668 TCAATCCTGCATACCAATTATGACTG 59.512 38.462 0.00 0.00 40.27 3.51
1883 2051 4.276678 CCTGCATACCAATTATGACTGTGG 59.723 45.833 0.00 0.00 40.27 4.17
1884 2052 5.109500 TGCATACCAATTATGACTGTGGA 57.891 39.130 0.00 0.00 40.27 4.02
1885 2053 5.693961 TGCATACCAATTATGACTGTGGAT 58.306 37.500 0.00 0.00 40.27 3.41
1886 2054 6.128486 TGCATACCAATTATGACTGTGGATT 58.872 36.000 0.00 0.00 40.27 3.01
1888 2056 7.141363 GCATACCAATTATGACTGTGGATTTC 58.859 38.462 0.00 0.00 40.27 2.17
1889 2057 7.651808 CATACCAATTATGACTGTGGATTTCC 58.348 38.462 0.00 0.00 40.27 3.13
1890 2058 5.831103 ACCAATTATGACTGTGGATTTCCT 58.169 37.500 0.00 0.00 36.82 3.36
1891 2059 5.888161 ACCAATTATGACTGTGGATTTCCTC 59.112 40.000 0.00 0.00 36.82 3.71
1898 2069 1.005215 CTGTGGATTTCCTCTTGCCCT 59.995 52.381 0.00 0.00 36.82 5.19
2218 2714 5.220586 CGTGTGCTGTTATAACATAGGTTGG 60.221 44.000 18.35 6.58 38.41 3.77
2341 2839 0.178995 TCTGGTGCATGCAAAGGACA 60.179 50.000 24.58 14.91 0.00 4.02
2342 2840 0.675083 CTGGTGCATGCAAAGGACAA 59.325 50.000 24.58 1.49 0.00 3.18
2357 2855 3.956744 AGGACAATTCAAGGGCTCTTAC 58.043 45.455 0.00 0.00 0.00 2.34
2389 2887 5.928839 GTCAAGTACAAGAGATCAAAGCTGA 59.071 40.000 0.00 0.00 35.56 4.26
2553 3051 2.189594 TGATGGTCAAGCACAAGAGG 57.810 50.000 0.00 0.00 0.00 3.69
2607 3112 4.532126 AGGATGATACACAACAAGGAGTCA 59.468 41.667 0.00 0.00 0.00 3.41
2820 3327 2.046507 CTGCCCTCGAAGCTGCTT 60.047 61.111 15.92 15.92 0.00 3.91
2863 3370 6.573434 GGAAACAGTGTTTTCTTGAGGAAAT 58.427 36.000 21.70 0.00 42.63 2.17
3419 3926 8.710551 CATTCAGCACTCTTCATCTATGTAATC 58.289 37.037 0.00 0.00 0.00 1.75
3562 4069 1.733402 CTCTCCTGCACCTAGAGCGG 61.733 65.000 8.50 8.50 38.10 5.52
3793 4300 4.715297 AGGAGAACAGTGAACCGGTATATT 59.285 41.667 8.00 0.00 0.00 1.28
4793 5300 5.424895 TGTAGGCTCCCATTTAAAATTGCAT 59.575 36.000 0.00 0.00 0.00 3.96
4797 5304 6.327104 AGGCTCCCATTTAAAATTGCATATCA 59.673 34.615 0.00 0.00 0.00 2.15
5074 5589 4.382345 AGTAGTCGAGGGAAAATTACCG 57.618 45.455 0.00 0.00 35.82 4.02
5151 5666 2.715046 TCTCAATTCGATGCCAAGCTT 58.285 42.857 0.00 0.00 0.00 3.74
5162 5677 4.853743 CGATGCCAAGCTTTTCTAAGAAAC 59.146 41.667 0.00 0.00 32.92 2.78
5280 6904 8.186178 ACACTGACACGATTAATTAGCTTAAG 57.814 34.615 0.00 0.00 32.93 1.85
5282 6906 8.656849 CACTGACACGATTAATTAGCTTAAGTT 58.343 33.333 4.02 0.00 32.93 2.66
5407 7031 2.795175 TGTAAGAATCCGAGCCGATC 57.205 50.000 0.00 0.00 0.00 3.69
5479 7103 8.574251 TTATCCTAGCTTTATTTTCAGCAACA 57.426 30.769 0.00 0.00 38.61 3.33
5480 7104 6.500684 TCCTAGCTTTATTTTCAGCAACAG 57.499 37.500 0.00 0.00 38.61 3.16
5481 7105 6.003950 TCCTAGCTTTATTTTCAGCAACAGT 58.996 36.000 0.00 0.00 38.61 3.55
5767 7401 5.428253 TGGATGACCTACTAATCAAGCAAC 58.572 41.667 0.00 0.00 37.04 4.17
5769 7403 6.058183 GGATGACCTACTAATCAAGCAACAT 58.942 40.000 0.00 0.00 0.00 2.71
5848 7482 9.219603 TGTCTTAGTTCACTCTTAATTTGATGG 57.780 33.333 0.00 0.00 0.00 3.51
5855 7489 9.118300 GTTCACTCTTAATTTGATGGATCTGAT 57.882 33.333 0.00 0.00 0.00 2.90
5856 7490 9.690913 TTCACTCTTAATTTGATGGATCTGATT 57.309 29.630 0.00 0.00 0.00 2.57
5914 7548 7.088905 TGACTAGTTTCCTTTTCTACACGATC 58.911 38.462 0.00 0.00 0.00 3.69
5917 7551 5.855045 AGTTTCCTTTTCTACACGATCTGT 58.145 37.500 0.00 0.00 36.82 3.41
6013 7650 6.959639 AGCTTGAAGGATAAAAGTTGTTCA 57.040 33.333 0.00 0.00 0.00 3.18
6132 7770 7.831691 TTTTGAATGTAGAACTTCCATTCCA 57.168 32.000 13.77 5.15 42.30 3.53
6151 7797 4.493618 TCCAGATATAGGAAAGGGACTGG 58.506 47.826 0.00 0.00 40.86 4.00
6254 7900 8.764524 AGAAGTAACTTGTCACAACATATCTC 57.235 34.615 0.00 0.00 34.73 2.75
6277 7923 5.833667 TCAATCCATTGTCTACCTCTCGTAT 59.166 40.000 0.00 0.00 38.84 3.06
6279 7925 7.175119 TCAATCCATTGTCTACCTCTCGTATAG 59.825 40.741 0.00 0.00 38.84 1.31
6330 8111 2.779755 AACTCAACATGGCCGTATCA 57.220 45.000 0.00 0.00 0.00 2.15
6349 8130 8.670135 CCGTATCACTGTATTTACCATTCAAAA 58.330 33.333 0.00 0.00 0.00 2.44
6729 8526 5.523438 TTTTTGCAAATACGAGAAAGGGT 57.477 34.783 13.65 0.00 0.00 4.34
6730 8527 4.759516 TTTGCAAATACGAGAAAGGGTC 57.240 40.909 8.05 0.00 0.00 4.46
6731 8528 3.410631 TGCAAATACGAGAAAGGGTCA 57.589 42.857 0.00 0.00 0.00 4.02
6738 8535 0.512952 CGAGAAAGGGTCAAAGCGTG 59.487 55.000 0.00 0.00 0.00 5.34
6816 8613 4.323562 GGCTAAACTATGGAGGCGGATTAT 60.324 45.833 0.00 0.00 0.00 1.28
6984 8785 8.561738 TTTCTTTAGATCAATAGGCTTTTCGT 57.438 30.769 0.00 0.00 0.00 3.85
6993 8794 2.640316 AGGCTTTTCGTCCTGTTTCT 57.360 45.000 0.00 0.00 0.00 2.52
7061 8864 9.401058 CCAGACTTTTGTATATCAATCTCCTTT 57.599 33.333 0.00 0.00 35.84 3.11
7177 8982 2.297701 ACAGTGCTAGGGTGTGTTTTG 58.702 47.619 0.00 0.00 0.00 2.44
7182 8987 1.269723 GCTAGGGTGTGTTTTGGCTTC 59.730 52.381 0.00 0.00 0.00 3.86
7233 9038 7.509546 AGAACTTCAGTGATGGTTCTTTTCTA 58.490 34.615 24.27 0.00 43.65 2.10
7386 9195 1.011333 CGCCCTATGTTACCGGTTTG 58.989 55.000 15.04 0.00 0.00 2.93
7409 9218 5.887598 TGTCATGATAAATGAAACTGGGAGG 59.112 40.000 0.00 0.00 0.00 4.30
7425 9234 3.389656 TGGGAGGTATGCATCGTAATTCA 59.610 43.478 0.19 0.00 0.00 2.57
7478 9291 0.525761 GCCTATTGCCGCTGTTCAAA 59.474 50.000 0.00 0.00 0.00 2.69
7480 9293 2.417243 GCCTATTGCCGCTGTTCAAATT 60.417 45.455 0.00 0.00 0.00 1.82
7568 9381 3.262405 TCAAAGGGCGTGGTTAGATAGTT 59.738 43.478 0.00 0.00 0.00 2.24
7574 9387 3.873361 GGCGTGGTTAGATAGTTTTACCC 59.127 47.826 0.00 0.00 0.00 3.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 7.556275 TGCTGGTAAAAGAGAAAGAAAGAAGAA 59.444 33.333 0.00 0.00 0.00 2.52
112 113 4.162040 ACAAGGCCAATTATCAGAGAGG 57.838 45.455 5.01 0.00 0.00 3.69
118 119 7.013274 GCAGTAGATTTACAAGGCCAATTATCA 59.987 37.037 5.01 0.00 31.96 2.15
130 131 9.820229 CGAAAATTAACAGCAGTAGATTTACAA 57.180 29.630 0.00 0.00 31.96 2.41
168 169 1.823470 GTGACACCCAACAGCAGCA 60.823 57.895 0.00 0.00 0.00 4.41
254 256 2.025418 CGGTGTCAGCGGTGGTAAC 61.025 63.158 16.53 10.34 35.16 2.50
264 266 1.278637 GTTTCAACCGCGGTGTCAG 59.721 57.895 34.95 21.69 0.00 3.51
270 272 2.854424 GCATCATATGTTTCAACCGCGG 60.854 50.000 26.86 26.86 0.00 6.46
356 385 5.049267 GGTAACAATTTCCTTCGCACACTTA 60.049 40.000 0.00 0.00 0.00 2.24
358 387 3.252458 GGTAACAATTTCCTTCGCACACT 59.748 43.478 0.00 0.00 0.00 3.55
359 388 3.252458 AGGTAACAATTTCCTTCGCACAC 59.748 43.478 0.00 0.00 41.41 3.82
360 389 3.482436 AGGTAACAATTTCCTTCGCACA 58.518 40.909 0.00 0.00 41.41 4.57
363 392 3.344515 AGGAGGTAACAATTTCCTTCGC 58.655 45.455 0.00 0.00 36.69 4.70
364 393 5.959618 AAAGGAGGTAACAATTTCCTTCG 57.040 39.130 7.20 0.00 46.52 3.79
386 415 5.134850 AGGTAACAGTTTCCTCCCCTAAAAA 59.865 40.000 5.64 0.00 41.41 1.94
387 416 4.666431 AGGTAACAGTTTCCTCCCCTAAAA 59.334 41.667 5.64 0.00 41.41 1.52
388 417 4.245308 AGGTAACAGTTTCCTCCCCTAAA 58.755 43.478 5.64 0.00 41.41 1.85
390 419 3.572661 AGGTAACAGTTTCCTCCCCTA 57.427 47.619 5.64 0.00 41.41 3.53
395 428 3.219281 TGCCAAAGGTAACAGTTTCCTC 58.781 45.455 11.66 0.92 41.41 3.71
402 435 0.798776 CGCTCTGCCAAAGGTAACAG 59.201 55.000 0.00 0.00 41.41 3.16
443 515 2.879026 GGATCTATTTTCGGGTGCCTTC 59.121 50.000 0.00 0.00 0.00 3.46
466 570 0.905357 CCTGGGACGTCATCTTCCTT 59.095 55.000 18.91 0.00 33.24 3.36
467 571 1.617947 GCCTGGGACGTCATCTTCCT 61.618 60.000 18.91 0.00 33.24 3.36
468 572 1.153349 GCCTGGGACGTCATCTTCC 60.153 63.158 18.91 9.38 0.00 3.46
501 606 4.974438 AGGTTGCCCCGGACTGGA 62.974 66.667 0.73 0.00 42.00 3.86
506 611 3.636231 CTGACAGGTTGCCCCGGA 61.636 66.667 0.73 0.00 38.74 5.14
512 617 2.160417 GCTGTAATGTCTGACAGGTTGC 59.840 50.000 16.46 10.36 42.77 4.17
514 619 2.612972 CCGCTGTAATGTCTGACAGGTT 60.613 50.000 16.46 9.03 42.77 3.50
526 631 2.693267 GGAACTCTTCCCGCTGTAAT 57.307 50.000 0.00 0.00 44.30 1.89
556 661 3.951680 TCTTTCTTCCCGCTGTTCTTTTT 59.048 39.130 0.00 0.00 0.00 1.94
558 663 2.879026 GTCTTTCTTCCCGCTGTTCTTT 59.121 45.455 0.00 0.00 0.00 2.52
560 665 1.270893 GGTCTTTCTTCCCGCTGTTCT 60.271 52.381 0.00 0.00 0.00 3.01
561 666 1.157585 GGTCTTTCTTCCCGCTGTTC 58.842 55.000 0.00 0.00 0.00 3.18
562 667 0.765510 AGGTCTTTCTTCCCGCTGTT 59.234 50.000 0.00 0.00 0.00 3.16
563 668 0.765510 AAGGTCTTTCTTCCCGCTGT 59.234 50.000 0.00 0.00 0.00 4.40
564 669 1.160137 CAAGGTCTTTCTTCCCGCTG 58.840 55.000 0.00 0.00 0.00 5.18
565 670 0.606673 GCAAGGTCTTTCTTCCCGCT 60.607 55.000 0.00 0.00 0.00 5.52
566 671 0.606673 AGCAAGGTCTTTCTTCCCGC 60.607 55.000 0.00 0.00 0.00 6.13
567 672 1.160137 CAGCAAGGTCTTTCTTCCCG 58.840 55.000 0.00 0.00 0.00 5.14
568 673 2.155279 GACAGCAAGGTCTTTCTTCCC 58.845 52.381 0.00 0.00 34.92 3.97
569 674 2.851195 TGACAGCAAGGTCTTTCTTCC 58.149 47.619 5.06 0.00 38.61 3.46
570 675 5.444663 AAATGACAGCAAGGTCTTTCTTC 57.555 39.130 5.06 0.00 38.61 2.87
571 676 5.859205 AAAATGACAGCAAGGTCTTTCTT 57.141 34.783 5.06 0.00 38.61 2.52
572 677 5.452356 CCAAAAATGACAGCAAGGTCTTTCT 60.452 40.000 5.06 0.00 38.61 2.52
573 678 4.746611 CCAAAAATGACAGCAAGGTCTTTC 59.253 41.667 5.06 0.00 38.61 2.62
574 679 4.696455 CCAAAAATGACAGCAAGGTCTTT 58.304 39.130 5.06 2.68 38.61 2.52
575 680 3.493176 GCCAAAAATGACAGCAAGGTCTT 60.493 43.478 5.06 0.00 38.61 3.01
1035 1171 3.464494 GGGGACGGGGTTACCTCG 61.464 72.222 23.31 23.31 36.97 4.63
1047 1183 2.363147 AGACAGAGAGCGGGGGAC 60.363 66.667 0.00 0.00 0.00 4.46
1050 1186 2.477176 CGAGAGACAGAGAGCGGGG 61.477 68.421 0.00 0.00 0.00 5.73
1052 1188 1.309499 AACCGAGAGACAGAGAGCGG 61.309 60.000 0.00 0.00 43.95 5.52
1054 1190 0.098025 CGAACCGAGAGACAGAGAGC 59.902 60.000 0.00 0.00 0.00 4.09
1061 1215 4.493747 CCCGCCGAACCGAGAGAC 62.494 72.222 0.00 0.00 0.00 3.36
1072 1226 2.784889 TTTACGTTTCCCTCCCGCCG 62.785 60.000 0.00 0.00 0.00 6.46
1084 1238 1.883926 GCATCCCCAACAGTTTACGTT 59.116 47.619 0.00 0.00 0.00 3.99
1085 1239 1.530323 GCATCCCCAACAGTTTACGT 58.470 50.000 0.00 0.00 0.00 3.57
1086 1240 0.446222 CGCATCCCCAACAGTTTACG 59.554 55.000 0.00 0.00 0.00 3.18
1089 1246 2.275380 GGCGCATCCCCAACAGTTT 61.275 57.895 10.83 0.00 0.00 2.66
1124 1284 1.388431 GAAGAACTCGAAGAAGCGCAG 59.612 52.381 11.47 0.00 34.09 5.18
1261 1421 3.567576 CACCAAATGGACGCACAAATA 57.432 42.857 6.42 0.00 38.94 1.40
1294 1454 2.024464 AGACCAGACACTCAGAGCCTAT 60.024 50.000 0.00 0.00 0.00 2.57
1312 1472 5.860716 GCATTTGAGAAATCAAAGGACAGAC 59.139 40.000 16.80 0.00 41.99 3.51
1314 1474 6.022163 AGCATTTGAGAAATCAAAGGACAG 57.978 37.500 16.80 3.67 41.99 3.51
1315 1475 6.218019 CAAGCATTTGAGAAATCAAAGGACA 58.782 36.000 16.80 0.00 41.99 4.02
1316 1476 5.119743 GCAAGCATTTGAGAAATCAAAGGAC 59.880 40.000 16.80 9.48 41.99 3.85
1399 1559 7.011016 GTGGCATGGTTAGGCAAAAATAATAAC 59.989 37.037 0.00 0.00 43.50 1.89
1402 1562 5.427378 GTGGCATGGTTAGGCAAAAATAAT 58.573 37.500 0.00 0.00 43.50 1.28
1404 1564 3.196685 GGTGGCATGGTTAGGCAAAAATA 59.803 43.478 0.00 0.00 43.50 1.40
1405 1565 2.027285 GGTGGCATGGTTAGGCAAAAAT 60.027 45.455 0.00 0.00 43.50 1.82
1421 1582 2.399856 TTGTTGTCGACAAGGTGGC 58.600 52.632 30.38 18.48 43.13 5.01
1429 1590 2.933906 TCCAGTTTCAGTTGTTGTCGAC 59.066 45.455 9.11 9.11 0.00 4.20
1457 1619 1.593196 ATGCCATTTCGTACCGATGG 58.407 50.000 10.82 10.82 38.56 3.51
1461 1623 4.509970 TCAATCTTATGCCATTTCGTACCG 59.490 41.667 0.00 0.00 0.00 4.02
1466 1628 6.506147 TCCAATTCAATCTTATGCCATTTCG 58.494 36.000 0.00 0.00 0.00 3.46
1575 1737 4.063689 CAGTTCTGCAGTTCAGTGAAGAT 58.936 43.478 14.67 0.00 43.32 2.40
1639 1801 1.870383 GCGTTTACGGTGGCATTCA 59.130 52.632 4.29 0.00 40.23 2.57
1697 1859 1.981951 TTGCAGCAGGTGTGTCCTCA 61.982 55.000 0.66 0.00 46.24 3.86
1703 1865 1.470098 GGAATACTTGCAGCAGGTGTG 59.530 52.381 20.03 0.67 0.00 3.82
1720 1882 1.902508 CTACCTCTCTGCCTGTTGGAA 59.097 52.381 0.00 0.00 34.57 3.53
1770 1932 8.385898 TGACAATAACCTAAGTGTTTACCAAG 57.614 34.615 0.00 0.00 0.00 3.61
1776 1938 8.691661 ACAGAATGACAATAACCTAAGTGTTT 57.308 30.769 0.00 0.00 39.69 2.83
1778 1940 7.174946 CCAACAGAATGACAATAACCTAAGTGT 59.825 37.037 0.00 0.00 39.69 3.55
1779 1941 7.390440 TCCAACAGAATGACAATAACCTAAGTG 59.610 37.037 0.00 0.00 39.69 3.16
1837 1999 8.295288 CAGGATTGAATCATTAAAGGCTACATC 58.705 37.037 7.56 0.00 0.00 3.06
1838 2000 7.255730 GCAGGATTGAATCATTAAAGGCTACAT 60.256 37.037 7.56 0.00 0.00 2.29
1868 2036 6.125029 AGAGGAAATCCACAGTCATAATTGG 58.875 40.000 1.67 0.00 38.89 3.16
1871 2039 5.591877 GCAAGAGGAAATCCACAGTCATAAT 59.408 40.000 1.67 0.00 38.89 1.28
1880 2048 1.004745 TCAGGGCAAGAGGAAATCCAC 59.995 52.381 1.67 0.00 38.89 4.02
1883 2051 2.797177 ACTCAGGGCAAGAGGAAATC 57.203 50.000 9.73 0.00 37.43 2.17
1884 2052 3.330701 TGTAACTCAGGGCAAGAGGAAAT 59.669 43.478 9.73 0.00 37.43 2.17
1885 2053 2.708861 TGTAACTCAGGGCAAGAGGAAA 59.291 45.455 9.73 0.00 37.43 3.13
1886 2054 2.334977 TGTAACTCAGGGCAAGAGGAA 58.665 47.619 9.73 0.00 37.43 3.36
1888 2056 3.356529 AATGTAACTCAGGGCAAGAGG 57.643 47.619 9.73 0.00 37.43 3.69
1889 2057 6.375455 ACAAATAATGTAACTCAGGGCAAGAG 59.625 38.462 4.16 4.16 41.63 2.85
1890 2058 6.245408 ACAAATAATGTAACTCAGGGCAAGA 58.755 36.000 0.00 0.00 41.63 3.02
1891 2059 6.515272 ACAAATAATGTAACTCAGGGCAAG 57.485 37.500 0.00 0.00 41.63 4.01
1898 2069 6.785076 TCCCTGGAACAAATAATGTAACTCA 58.215 36.000 0.00 0.00 42.99 3.41
2152 2641 0.394080 GCAGCAGAGGAAAGAGCCAT 60.394 55.000 0.00 0.00 0.00 4.40
2218 2714 4.524053 CAGTACCTGGAGGGAAAAATACC 58.476 47.826 0.00 0.00 40.27 2.73
2341 2839 4.015872 TCAACGTAAGAGCCCTTGAATT 57.984 40.909 0.00 0.00 43.62 2.17
2342 2840 3.695830 TCAACGTAAGAGCCCTTGAAT 57.304 42.857 0.00 0.00 43.62 2.57
2357 2855 4.556233 TCTCTTGTACTTGACCATCAACG 58.444 43.478 0.00 0.00 32.21 4.10
2607 3112 4.605183 ACATCCTTGCTAGACACTCTACT 58.395 43.478 0.00 0.00 0.00 2.57
2679 3186 2.932614 CCTTACGGAGCTTCTGAACATG 59.067 50.000 0.00 0.00 0.00 3.21
2820 3327 1.144969 CGAGCTTCCTTTACACGCAA 58.855 50.000 0.00 0.00 0.00 4.85
2863 3370 7.675161 TGAAAGGATCCACTATCATGTTCTA 57.325 36.000 15.82 0.00 36.20 2.10
3113 3620 1.899814 TCAGGTACATGGTCACTGGTC 59.100 52.381 7.81 0.00 0.00 4.02
3562 4069 3.270877 AGGCAACCATTTCTGTCGATAC 58.729 45.455 0.00 0.00 37.17 2.24
3793 4300 3.520721 TCATTCTTCAGAGATTCCCTGCA 59.479 43.478 0.00 0.00 0.00 4.41
4088 4595 7.707104 TGACTTCTTCTGAACCAAAGAAAATC 58.293 34.615 8.57 0.00 40.09 2.17
4699 5206 7.969536 ATAAAAGGATACATGATGAACGAGG 57.030 36.000 0.00 0.00 41.41 4.63
4797 5304 9.040939 GTGCAATTTGGTACTGTAAAGAAAATT 57.959 29.630 0.00 0.00 0.00 1.82
5074 5589 9.855021 AAATGCATATACACTTTTAAGGTGTTC 57.145 29.630 17.47 4.37 44.25 3.18
5162 5677 6.742109 AGCCCATCAAATGAAATATCTTTCG 58.258 36.000 0.00 0.00 43.10 3.46
5195 5710 6.206634 CCCTATGTTGCTTGAGTTTAAGTTCA 59.793 38.462 0.00 0.00 0.00 3.18
5250 6871 7.817962 AGCTAATTAATCGTGTCAGTGTTTAGT 59.182 33.333 0.00 0.00 0.00 2.24
5367 6991 9.103861 CTTACAAAGGAACCTCATCTAGAATTC 57.896 37.037 0.00 0.00 0.00 2.17
5368 6992 8.826765 TCTTACAAAGGAACCTCATCTAGAATT 58.173 33.333 0.00 0.00 0.00 2.17
5369 6993 8.380742 TCTTACAAAGGAACCTCATCTAGAAT 57.619 34.615 0.00 0.00 0.00 2.40
5370 6994 7.792364 TCTTACAAAGGAACCTCATCTAGAA 57.208 36.000 0.00 0.00 0.00 2.10
5371 6995 7.792364 TTCTTACAAAGGAACCTCATCTAGA 57.208 36.000 0.00 0.00 0.00 2.43
5372 6996 7.713073 GGATTCTTACAAAGGAACCTCATCTAG 59.287 40.741 0.00 0.00 0.00 2.43
5373 6997 7.565680 GGATTCTTACAAAGGAACCTCATCTA 58.434 38.462 0.00 0.00 0.00 1.98
5384 7008 1.933853 CGGCTCGGATTCTTACAAAGG 59.066 52.381 0.00 0.00 0.00 3.11
5407 7031 4.454161 TGAGTATGTTTGACACCCAAATCG 59.546 41.667 0.00 0.00 45.48 3.34
5412 7036 3.750371 CCTTGAGTATGTTTGACACCCA 58.250 45.455 0.00 0.00 0.00 4.51
5479 7103 3.498774 ACAGAGCAAATGTTCCTCACT 57.501 42.857 0.00 0.00 0.00 3.41
5480 7104 3.316308 ACAACAGAGCAAATGTTCCTCAC 59.684 43.478 0.00 0.00 38.80 3.51
5481 7105 3.554934 ACAACAGAGCAAATGTTCCTCA 58.445 40.909 0.00 0.00 38.80 3.86
5575 7209 1.086696 CCACTGTATGCCTTTGTCGG 58.913 55.000 0.00 0.00 0.00 4.79
5671 7305 2.957680 TGAACAGAAGCTGATTTTGCCA 59.042 40.909 0.82 0.00 35.18 4.92
5903 7537 4.338012 TGTAAGGGACAGATCGTGTAGAA 58.662 43.478 0.00 0.00 40.56 2.10
5914 7548 8.621286 GGAACACAAATATAATGTAAGGGACAG 58.379 37.037 0.00 0.00 42.79 3.51
6013 7650 1.135689 GCAACAAGAATGATTCCGCGT 60.136 47.619 4.92 0.00 0.00 6.01
6132 7770 9.722317 CTTATATCCAGTCCCTTTCCTATATCT 57.278 37.037 0.00 0.00 0.00 1.98
6144 7790 3.142174 GTTGCTGCTTATATCCAGTCCC 58.858 50.000 0.00 0.00 0.00 4.46
6145 7791 3.812053 CAGTTGCTGCTTATATCCAGTCC 59.188 47.826 0.00 0.00 0.00 3.85
6174 7820 6.107901 AGCATTGAAAGACAGTCTACTCTT 57.892 37.500 2.64 0.00 0.00 2.85
6254 7900 4.392921 ACGAGAGGTAGACAATGGATTG 57.607 45.455 0.00 0.00 43.26 2.67
6277 7923 7.451877 AGGTCTAGATGAAACAACAAGACTCTA 59.548 37.037 0.00 0.00 33.92 2.43
6279 7925 6.459923 AGGTCTAGATGAAACAACAAGACTC 58.540 40.000 0.00 0.00 33.92 3.36
6330 8111 9.705290 GGAAACATTTTGAATGGTAAATACAGT 57.295 29.630 5.73 0.00 0.00 3.55
6349 8130 7.978099 AAAAGGATAAAGCATAGGGAAACAT 57.022 32.000 0.00 0.00 0.00 2.71
6728 8525 0.515564 ACCATTACGCACGCTTTGAC 59.484 50.000 0.00 0.00 0.00 3.18
6729 8526 0.515127 CACCATTACGCACGCTTTGA 59.485 50.000 0.00 0.00 0.00 2.69
6730 8527 0.515127 TCACCATTACGCACGCTTTG 59.485 50.000 0.00 0.00 0.00 2.77
6731 8528 1.130373 CATCACCATTACGCACGCTTT 59.870 47.619 0.00 0.00 0.00 3.51
6738 8535 2.607635 CACTACCACATCACCATTACGC 59.392 50.000 0.00 0.00 0.00 4.42
6816 8613 3.055385 AGCTTAAGGACGAATGCCTAACA 60.055 43.478 4.29 0.00 33.76 2.41
7152 8957 2.903784 ACACACCCTAGCACTGTATTCA 59.096 45.455 0.00 0.00 0.00 2.57
7177 8982 0.037046 CACAGCCCCAAAATGAAGCC 60.037 55.000 0.00 0.00 0.00 4.35
7182 8987 0.106335 TGCAACACAGCCCCAAAATG 59.894 50.000 0.00 0.00 0.00 2.32
7204 9009 5.799213 AGAACCATCACTGAAGTTCTAAGG 58.201 41.667 19.21 0.86 45.31 2.69
7366 9175 0.903942 AAACCGGTAACATAGGGCGA 59.096 50.000 8.00 0.00 0.00 5.54
7386 9195 5.888161 ACCTCCCAGTTTCATTTATCATGAC 59.112 40.000 0.00 0.00 0.00 3.06
7409 9218 9.214953 CTTTTTCTTCTGAATTACGATGCATAC 57.785 33.333 0.00 0.00 31.56 2.39


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.