AutoCloner

Multiple sequence alignment - TraesCS5D01G478400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS5D01G478400	chr5D	100.000	2462	0	0	1	2462	517212469	517214930	0.000000e+00	4547.0
1	TraesCS5D01G478400	chr5D	91.253	846	58	10	801	1634	495199783	495200624	0.000000e+00	1138.0
2	TraesCS5D01G478400	chr5D	87.673	941	79	18	706	1634	501450288	501449373	0.000000e+00	1061.0
3	TraesCS5D01G478400	chr5D	90.315	826	55	13	801	1619	495142356	495143163	0.000000e+00	1059.0
4	TraesCS5D01G478400	chr5D	84.962	931	85	33	706	1582	509024767	509023838	0.000000e+00	893.0
5	TraesCS5D01G478400	chr5D	93.784	370	19	1	1	366	517302171	517302540	9.950000e-154	553.0
6	TraesCS5D01G478400	chr5D	88.937	461	30	11	461	902	517303995	517304453	1.290000e-152	549.0
7	TraesCS5D01G478400	chr5D	88.889	459	32	8	461	902	517302962	517303418	4.630000e-152	547.0
8	TraesCS5D01G478400	chr5D	88.865	458	32	8	461	902	517305350	517305804	1.660000e-151	545.0
9	TraesCS5D01G478400	chr5D	89.370	254	27	0	1	254	517092759	517093012	1.100000e-83	320.0
10	TraesCS5D01G478400	chr5D	90.000	100	7	1	2366	2462	517306799	517306898	2.570000e-25	126.0
11	TraesCS5D01G478400	chr5D	90.000	80	8	0	1676	1755	296965871	296965950	1.200000e-18	104.0
12	TraesCS5D01G478400	chr5D	86.420	81	5	3	1824	1898	495201168	495201248	1.570000e-12	84.2
13	TraesCS5D01G478400	chr5A	90.747	1286	80	24	367	1631	644309829	644311096	0.000000e+00	1679.0
14	TraesCS5D01G478400	chr5A	90.654	856	52	13	800	1634	619344065	619344913	0.000000e+00	1112.0
15	TraesCS5D01G478400	chr5A	92.960	625	34	7	989	1605	625715430	625716052	0.000000e+00	902.0
16	TraesCS5D01G478400	chr5A	91.528	661	27	12	1829	2462	644311394	644312052	0.000000e+00	883.0
17	TraesCS5D01G478400	chr5A	89.398	349	29	5	1	348	644303817	644304158	1.350000e-117	433.0
18	TraesCS5D01G478400	chr5B	92.816	1044	41	19	598	1631	649498178	649499197	0.000000e+00	1482.0
19	TraesCS5D01G478400	chr5B	95.556	810	22	2	1653	2462	649695235	649696030	0.000000e+00	1284.0
20	TraesCS5D01G478400	chr5B	90.703	839	50	14	800	1631	611677574	611678391	0.000000e+00	1092.0
21	TraesCS5D01G478400	chr5B	87.487	927	79	18	717	1634	629926556	629925658	0.000000e+00	1035.0
22	TraesCS5D01G478400	chr5B	92.613	731	19	7	706	1435	649694157	649694853	0.000000e+00	1018.0
23	TraesCS5D01G478400	chr5B	98.401	563	8	1	1643	2205	649499322	649499883	0.000000e+00	989.0
24	TraesCS5D01G478400	chr5B	91.512	648	44	7	990	1631	633171438	633172080	0.000000e+00	881.0
25	TraesCS5D01G478400	chr5B	94.545	220	8	2	2238	2453	649499883	649500102	1.090000e-88	337.0
26	TraesCS5D01G478400	chr5B	83.221	149	12	3	1676	1824	633172212	633172347	9.240000e-25	124.0
27	TraesCS5D01G478400	chr5B	92.105	76	5	1	1827	1902	629952187	629952113	3.350000e-19	106.0
28	TraesCS5D01G478400	chr5B	88.608	79	5	1	1824	1898	611678909	611678987	2.610000e-15	93.5
29	TraesCS5D01G478400	chr5B	91.176	68	6	0	1827	1894	625130389	625130322	2.610000e-15	93.5
30	TraesCS5D01G478400	chr5B	91.176	68	6	0	1827	1894	628723395	628723328	2.610000e-15	93.5
31	TraesCS5D01G478400	chr4D	84.444	90	13	1	1833	1922	347233252	347233164	1.210000e-13	87.9

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS5D01G478400	chr5D	517212469	517214930	2461	False	4547.00	4547	100.0000	1	2462	1	chr5D.!!$F4	2461
1	TraesCS5D01G478400	chr5D	501449373	501450288	915	True	1061.00	1061	87.6730	706	1634	1	chr5D.!!$R1	928
2	TraesCS5D01G478400	chr5D	495142356	495143163	807	False	1059.00	1059	90.3150	801	1619	1	chr5D.!!$F2	818
3	TraesCS5D01G478400	chr5D	509023838	509024767	929	True	893.00	893	84.9620	706	1582	1	chr5D.!!$R2	876
4	TraesCS5D01G478400	chr5D	495199783	495201248	1465	False	611.10	1138	88.8365	801	1898	2	chr5D.!!$F5	1097
5	TraesCS5D01G478400	chr5D	517302171	517306898	4727	False	464.00	553	90.0950	1	2462	5	chr5D.!!$F6	2461
6	TraesCS5D01G478400	chr5A	644309829	644312052	2223	False	1281.00	1679	91.1375	367	2462	2	chr5A.!!$F4	2095
7	TraesCS5D01G478400	chr5A	619344065	619344913	848	False	1112.00	1112	90.6540	800	1634	1	chr5A.!!$F1	834
8	TraesCS5D01G478400	chr5A	625715430	625716052	622	False	902.00	902	92.9600	989	1605	1	chr5A.!!$F2	616
9	TraesCS5D01G478400	chr5B	649694157	649696030	1873	False	1151.00	1284	94.0845	706	2462	2	chr5B.!!$F4	1756
10	TraesCS5D01G478400	chr5B	629925658	629926556	898	True	1035.00	1035	87.4870	717	1634	1	chr5B.!!$R3	917
11	TraesCS5D01G478400	chr5B	649498178	649500102	1924	False	936.00	1482	95.2540	598	2453	3	chr5B.!!$F3	1855
12	TraesCS5D01G478400	chr5B	611677574	611678987	1413	False	592.75	1092	89.6555	800	1898	2	chr5B.!!$F1	1098
13	TraesCS5D01G478400	chr5B	633171438	633172347	909	False	502.50	881	87.3665	990	1824	2	chr5B.!!$F2	834

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
191	196	0.24746	CACTGGAAGCATCGTCTCCA	59.753	55.0	0.0	0.0	37.6	3.86	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1631	5399	2.093711	ACAGGTTGGGTCAAAACTTTGC	60.094	45.455	0.0	0.0	38.05	3.68	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
61	66	7.443575	GCCACAACATGATATTTCATAGAGAGT	59.556	37.037	0.00	0.00	40.70	3.24
76	81	8.453238	TCATAGAGAGTATTACACAGAACTCC	57.547	38.462	0.00	0.00	39.33	3.85
103	108	4.981806	TCTTTCAAGGACAAACTGTTGG	57.018	40.909	0.00	0.00	39.22	3.77
119	124	2.435059	GGGCAGAGAGTTCCGCAC	60.435	66.667	0.00	0.00	0.00	5.34
123	128	1.011451	GCAGAGAGTTCCGCACAGAC	61.011	60.000	0.00	0.00	0.00	3.51
140	145	2.031420	CAGACTGTTGTAGAACGTCCGA	60.031	50.000	17.57	0.00	36.81	4.55
160	165	7.042456	CGTCCGATGATTAAACTCAAGATCATT	60.042	37.037	0.00	0.00	38.85	2.57
191	196	0.247460	CACTGGAAGCATCGTCTCCA	59.753	55.000	0.00	0.00	37.60	3.86
248	253	0.798776	CGGTCACATTGGAGAAGTGC	59.201	55.000	0.00	0.00	33.44	4.40
267	272	2.899256	TGCATCCTTTCTTTTTGGAGGG	59.101	45.455	0.00	0.00	32.92	4.30
270	275	4.082190	GCATCCTTTCTTTTTGGAGGGTAC	60.082	45.833	0.00	0.00	32.92	3.34
272	277	5.132043	TCCTTTCTTTTTGGAGGGTACAA	57.868	39.130	0.00	0.00	0.00	2.41
284	289	6.642707	TGGAGGGTACAAACATAAACTTTG	57.357	37.500	0.00	0.00	35.17	2.77
298	303	8.255394	ACATAAACTTTGCTTTATTTGGATGC	57.745	30.769	0.00	0.00	0.00	3.91
356	361	5.123979	GGCTAGCTATGCCCAACAATATTAC	59.876	44.000	15.72	0.00	44.32	1.89
366	371	6.937465	TGCCCAACAATATTACGCTCATATAA	59.063	34.615	0.00	0.00	0.00	0.98
367	372	7.445707	TGCCCAACAATATTACGCTCATATAAA	59.554	33.333	0.00	0.00	0.00	1.40
368	373	8.293867	GCCCAACAATATTACGCTCATATAAAA	58.706	33.333	0.00	0.00	0.00	1.52
420	1810	5.017294	TCCGCTGTTACATGTCATATTGA	57.983	39.130	0.00	0.00	0.00	2.57
448	1838	1.803334	TTGCGGGTGACAAGTCATAC	58.197	50.000	6.15	3.11	42.18	2.39
451	1841	2.007049	GCGGGTGACAAGTCATACTGG	61.007	57.143	6.15	1.97	42.18	4.00
452	1842	1.739067	GGGTGACAAGTCATACTGGC	58.261	55.000	6.15	0.00	42.18	4.85
696	3435	2.621070	TCCCTGGCTCTTGTAGAAAGT	58.379	47.619	0.00	0.00	0.00	2.66
698	3437	4.362677	TCCCTGGCTCTTGTAGAAAGTAT	58.637	43.478	0.00	0.00	0.00	2.12
702	3441	3.844211	TGGCTCTTGTAGAAAGTATGGGT	59.156	43.478	0.00	0.00	0.00	4.51
703	3442	4.288626	TGGCTCTTGTAGAAAGTATGGGTT	59.711	41.667	0.00	0.00	0.00	4.11
704	3443	5.222048	TGGCTCTTGTAGAAAGTATGGGTTT	60.222	40.000	0.00	0.00	0.00	3.27
761	3508	2.878406	TCTCTCTTTCGTTGGCAAAAGG	59.122	45.455	0.00	0.00	34.08	3.11
765	3512	4.081917	TCTCTTTCGTTGGCAAAAGGTTTT	60.082	37.500	0.00	0.00	34.08	2.43
771	3518	3.377439	GTTGGCAAAAGGTTTTACCGAG	58.623	45.455	0.00	0.00	44.90	4.63
776	3523	3.610821	GCAAAAGGTTTTACCGAGCGAAT	60.611	43.478	0.00	0.00	44.90	3.34
831	3581	0.819259	CCATTCGCCACCGATCCAAT	60.819	55.000	0.00	0.00	43.97	3.16
871	3621	3.310860	GATCGACGGCCCCACACTT	62.311	63.158	0.00	0.00	0.00	3.16
975	3771	0.250234	CCAAATCTCTCCGCACCTCA	59.750	55.000	0.00	0.00	0.00	3.86
976	3772	1.339055	CCAAATCTCTCCGCACCTCAA	60.339	52.381	0.00	0.00	0.00	3.02
977	3773	2.426522	CAAATCTCTCCGCACCTCAAA	58.573	47.619	0.00	0.00	0.00	2.69
978	3774	2.100605	AATCTCTCCGCACCTCAAAC	57.899	50.000	0.00	0.00	0.00	2.93
992	3788	2.115266	AAACCAACCCCTGCCTCG	59.885	61.111	0.00	0.00	0.00	4.63
1619	5387	4.919168	CGTCTGTTCATGATTTTGCAATGT	59.081	37.500	0.00	0.00	0.00	2.71
1631	5399	8.085720	TGATTTTGCAATGTTATGGAGTTTTG	57.914	30.769	0.00	0.00	0.00	2.44
1634	5402	4.953667	TGCAATGTTATGGAGTTTTGCAA	58.046	34.783	5.73	0.00	44.39	4.08
1635	5403	5.363101	TGCAATGTTATGGAGTTTTGCAAA	58.637	33.333	8.05	8.05	44.39	3.68
1636	5404	5.466058	TGCAATGTTATGGAGTTTTGCAAAG	59.534	36.000	12.41	0.00	44.39	2.77
1637	5405	5.466393	GCAATGTTATGGAGTTTTGCAAAGT	59.534	36.000	12.41	3.82	39.30	2.66
1639	5407	7.467131	GCAATGTTATGGAGTTTTGCAAAGTTT	60.467	33.333	12.41	1.97	39.30	2.66
1669	5564	4.964593	ACCTGTATTTTACCTGTCACGTT	58.035	39.130	0.00	0.00	0.00	3.99
2210	6466	7.291411	TGCTTGATAAGAGTTAGATAGACCC	57.709	40.000	0.00	0.00	0.00	4.46
2211	6467	6.839134	TGCTTGATAAGAGTTAGATAGACCCA	59.161	38.462	0.00	0.00	0.00	4.51
2212	6468	7.510685	TGCTTGATAAGAGTTAGATAGACCCAT	59.489	37.037	0.00	0.00	0.00	4.00
2213	6469	8.371699	GCTTGATAAGAGTTAGATAGACCCATT	58.628	37.037	0.00	0.00	0.00	3.16
2231	6487	8.096414	AGACCCATTTTTAAACAATCAAGATGG	58.904	33.333	0.00	0.00	33.13	3.51
2232	6488	6.654582	ACCCATTTTTAAACAATCAAGATGGC	59.345	34.615	0.00	0.00	32.23	4.40
2233	6489	6.654161	CCCATTTTTAAACAATCAAGATGGCA	59.346	34.615	0.00	0.00	32.23	4.92
2234	6490	7.174599	CCCATTTTTAAACAATCAAGATGGCAA	59.825	33.333	0.00	0.00	32.23	4.52
2235	6491	8.566260	CCATTTTTAAACAATCAAGATGGCAAA	58.434	29.630	0.00	0.00	0.00	3.68
2347	6603	2.684881	ACCTCATTCTGCCGCATAAAAG	59.315	45.455	0.00	0.00	0.00	2.27
2422	6678	5.677091	GCAGGCACAACCAGACAATAAATAG	60.677	44.000	0.00	0.00	43.14	1.73
2431	6690	5.300286	ACCAGACAATAAATAGCAAGATGCC	59.700	40.000	0.00	0.00	46.52	4.40

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
61	66	9.436957	GAAAGATTTCAGGAGTTCTGTGTAATA	57.563	33.333	0.00	0.00	43.76	0.98
76	81	6.799512	ACAGTTTGTCCTTGAAAGATTTCAG	58.200	36.000	7.95	3.76	46.68	3.02
107	112	0.315568	ACAGTCTGTGCGGAACTCTC	59.684	55.000	4.21	0.00	0.00	3.20
114	119	1.792949	GTTCTACAACAGTCTGTGCGG	59.207	52.381	6.18	2.23	32.14	5.69
115	120	1.452025	CGTTCTACAACAGTCTGTGCG	59.548	52.381	6.18	3.68	32.14	5.34
119	124	2.031420	TCGGACGTTCTACAACAGTCTG	60.031	50.000	0.00	0.00	40.28	3.51
123	128	3.211803	TCATCGGACGTTCTACAACAG	57.788	47.619	0.00	0.00	32.14	3.16
140	145	7.128077	ACCCCAATGATCTTGAGTTTAATCAT	58.872	34.615	0.00	0.00	39.83	2.45
160	165	2.196595	CTTCCAGTGATCCTAACCCCA	58.803	52.381	0.00	0.00	0.00	4.96
191	196	7.020827	TCTCTTGATAGATCCAAACAAGGTT	57.979	36.000	12.75	0.00	38.56	3.50
206	211	5.175673	CGATTAACAAGCGCATCTCTTGATA	59.824	40.000	11.47	0.82	42.52	2.15
248	253	5.076873	TGTACCCTCCAAAAAGAAAGGATG	58.923	41.667	0.00	0.00	0.00	3.51
272	277	8.720562	GCATCCAAATAAAGCAAAGTTTATGTT	58.279	29.630	0.00	0.00	33.71	2.71
284	289	0.248621	AGCGCGCATCCAAATAAAGC	60.249	50.000	35.10	0.00	0.00	3.51
298	303	4.912173	CTAGTCTAGCTGAGCGCG	57.088	61.111	0.00	0.00	45.59	6.86
696	3435	4.526970	GGATCAGCTCTCAAAAACCCATA	58.473	43.478	0.00	0.00	0.00	2.74
698	3437	2.795329	GGATCAGCTCTCAAAAACCCA	58.205	47.619	0.00	0.00	0.00	4.51
702	3441	5.122869	CAGAAATCGGATCAGCTCTCAAAAA	59.877	40.000	0.00	0.00	0.00	1.94
703	3442	4.633126	CAGAAATCGGATCAGCTCTCAAAA	59.367	41.667	0.00	0.00	0.00	2.44
704	3443	4.186926	CAGAAATCGGATCAGCTCTCAAA	58.813	43.478	0.00	0.00	0.00	2.69
761	3508	2.284417	CCTGCTATTCGCTCGGTAAAAC	59.716	50.000	0.00	0.00	40.11	2.43
765	3512	2.038690	CCCTGCTATTCGCTCGGTA	58.961	57.895	0.00	0.00	40.11	4.02
771	3518	3.643978	CTGCGCCCTGCTATTCGC	61.644	66.667	4.18	6.95	46.63	4.70
776	3523	1.079405	GTTACACTGCGCCCTGCTA	60.079	57.895	4.18	0.00	46.63	3.49
887	3637	4.098155	GGGTTTGGGGAGGCTATTTAAAA	58.902	43.478	0.00	0.00	0.00	1.52
975	3771	2.115266	CGAGGCAGGGGTTGGTTT	59.885	61.111	0.00	0.00	0.00	3.27
976	3772	2.852075	TCGAGGCAGGGGTTGGTT	60.852	61.111	0.00	0.00	0.00	3.67
977	3773	3.322466	CTCGAGGCAGGGGTTGGT	61.322	66.667	3.91	0.00	0.00	3.67
978	3774	4.785453	GCTCGAGGCAGGGGTTGG	62.785	72.222	15.58	0.00	41.35	3.77
1068	3879	3.661648	GCCTTCTTCCTGGGGCCA	61.662	66.667	4.39	0.00	38.77	5.36
1619	5387	6.536941	GGTCAAAACTTTGCAAAACTCCATAA	59.463	34.615	13.84	0.00	38.05	1.90
1631	5399	2.093711	ACAGGTTGGGTCAAAACTTTGC	60.094	45.455	0.00	0.00	38.05	3.68
1634	5402	6.553953	AAAATACAGGTTGGGTCAAAACTT	57.446	33.333	0.00	0.00	0.00	2.66
1635	5403	6.041182	GGTAAAATACAGGTTGGGTCAAAACT	59.959	38.462	0.00	0.00	0.00	2.66
1636	5404	6.041182	AGGTAAAATACAGGTTGGGTCAAAAC	59.959	38.462	0.00	0.00	0.00	2.43
1637	5405	6.041069	CAGGTAAAATACAGGTTGGGTCAAAA	59.959	38.462	0.00	0.00	0.00	2.44
1639	5407	5.074115	CAGGTAAAATACAGGTTGGGTCAA	58.926	41.667	0.00	0.00	0.00	3.18
1669	5564	3.385433	TGTCTGAACCTGAACTCCGTAAA	59.615	43.478	0.00	0.00	0.00	2.01
1674	5569	4.023707	CACAAATGTCTGAACCTGAACTCC	60.024	45.833	0.00	0.00	0.00	3.85
2022	6221	4.201753	CCTGAATATATTTGGCAGCGATCG	60.202	45.833	11.69	11.69	0.00	3.69
2205	6461	8.096414	CCATCTTGATTGTTTAAAAATGGGTCT	58.904	33.333	0.00	0.00	0.00	3.85
2206	6462	7.148423	GCCATCTTGATTGTTTAAAAATGGGTC	60.148	37.037	0.00	0.00	0.00	4.46
2207	6463	6.654582	GCCATCTTGATTGTTTAAAAATGGGT	59.345	34.615	0.00	0.00	0.00	4.51
2208	6464	6.654161	TGCCATCTTGATTGTTTAAAAATGGG	59.346	34.615	0.00	0.00	0.00	4.00
2209	6465	7.670009	TGCCATCTTGATTGTTTAAAAATGG	57.330	32.000	0.00	0.00	0.00	3.16
2213	6469	8.494347	CGAATTTGCCATCTTGATTGTTTAAAA	58.506	29.630	0.00	0.00	0.00	1.52
2214	6470	7.117523	CCGAATTTGCCATCTTGATTGTTTAAA	59.882	33.333	0.00	0.00	0.00	1.52
2215	6471	6.589523	CCGAATTTGCCATCTTGATTGTTTAA	59.410	34.615	0.00	0.00	0.00	1.52
2216	6472	6.098679	CCGAATTTGCCATCTTGATTGTTTA	58.901	36.000	0.00	0.00	0.00	2.01
2217	6473	4.931002	CCGAATTTGCCATCTTGATTGTTT	59.069	37.500	0.00	0.00	0.00	2.83
2218	6474	4.021192	ACCGAATTTGCCATCTTGATTGTT	60.021	37.500	0.00	0.00	0.00	2.83
2219	6475	3.511146	ACCGAATTTGCCATCTTGATTGT	59.489	39.130	0.00	0.00	0.00	2.71
2220	6476	3.861113	CACCGAATTTGCCATCTTGATTG	59.139	43.478	0.00	0.00	0.00	2.67
2221	6477	3.763360	TCACCGAATTTGCCATCTTGATT	59.237	39.130	0.00	0.00	0.00	2.57
2222	6478	3.355378	TCACCGAATTTGCCATCTTGAT	58.645	40.909	0.00	0.00	0.00	2.57
2223	6479	2.789213	TCACCGAATTTGCCATCTTGA	58.211	42.857	0.00	0.00	0.00	3.02
2224	6480	3.379372	AGATCACCGAATTTGCCATCTTG	59.621	43.478	0.00	0.00	0.00	3.02
2225	6481	3.624777	AGATCACCGAATTTGCCATCTT	58.375	40.909	0.00	0.00	0.00	2.40
2226	6482	3.287867	AGATCACCGAATTTGCCATCT	57.712	42.857	0.00	0.00	0.00	2.90
2227	6483	4.576463	AGTAAGATCACCGAATTTGCCATC	59.424	41.667	0.00	0.00	0.00	3.51
2228	6484	4.526970	AGTAAGATCACCGAATTTGCCAT	58.473	39.130	0.00	0.00	0.00	4.40
2229	6485	3.950397	AGTAAGATCACCGAATTTGCCA	58.050	40.909	0.00	0.00	0.00	4.92
2230	6486	5.560953	GCATAGTAAGATCACCGAATTTGCC	60.561	44.000	0.00	0.00	0.00	4.52
2231	6487	5.237344	AGCATAGTAAGATCACCGAATTTGC	59.763	40.000	0.00	0.00	0.00	3.68
2232	6488	6.851222	AGCATAGTAAGATCACCGAATTTG	57.149	37.500	0.00	0.00	0.00	2.32
2233	6489	7.952671	TCTAGCATAGTAAGATCACCGAATTT	58.047	34.615	0.00	0.00	40.38	1.82
2234	6490	7.526142	TCTAGCATAGTAAGATCACCGAATT	57.474	36.000	0.00	0.00	40.38	2.17
2235	6491	7.526142	TTCTAGCATAGTAAGATCACCGAAT	57.474	36.000	0.00	0.00	40.38	3.34
2236	6492	6.954487	TTCTAGCATAGTAAGATCACCGAA	57.046	37.500	0.00	0.00	40.38	4.30
2237	6493	6.320418	TGTTTCTAGCATAGTAAGATCACCGA	59.680	38.462	0.00	0.00	40.38	4.69
2347	6603	5.559148	ACAATCCCTCAAGATGGTCTATC	57.441	43.478	0.00	0.00	35.97	2.08

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.