Multiple sequence alignment - TraesCS5D01G477700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G477700 chr5D 100.000 3516 0 0 1 3516 516815179 516818694 0.000000e+00 6493.0
1 TraesCS5D01G477700 chr5B 92.495 2305 140 23 820 3100 649401312 649403607 0.000000e+00 3267.0
2 TraesCS5D01G477700 chr5B 92.739 482 22 6 3035 3516 649403600 649404068 0.000000e+00 684.0
3 TraesCS5D01G477700 chr5B 91.549 355 25 4 264 618 649400754 649401103 5.280000e-133 484.0
4 TraesCS5D01G477700 chr5B 92.641 231 15 1 2 230 620298203 620298433 7.270000e-87 331.0
5 TraesCS5D01G477700 chr5A 93.034 1450 86 10 1656 3097 644134053 644135495 0.000000e+00 2104.0
6 TraesCS5D01G477700 chr5A 92.243 477 30 3 3037 3513 644135490 644135959 0.000000e+00 669.0
7 TraesCS5D01G477700 chr5A 83.803 426 42 15 247 648 644132469 644132891 2.560000e-101 379.0
8 TraesCS5D01G477700 chr5A 88.732 142 5 6 767 897 644133004 644133145 2.810000e-36 163.0
9 TraesCS5D01G477700 chr1B 90.441 1203 93 13 1950 3143 34730809 34729620 0.000000e+00 1565.0
10 TraesCS5D01G477700 chr1B 88.755 249 28 0 1710 1958 34731585 34731337 4.410000e-79 305.0
11 TraesCS5D01G477700 chr1B 83.835 266 34 7 3087 3351 34729574 34729317 9.750000e-61 244.0
12 TraesCS5D01G477700 chr1B 89.394 132 9 3 3346 3476 34727984 34727857 1.010000e-35 161.0
13 TraesCS5D01G477700 chr1B 89.474 57 6 0 3087 3143 34729625 34729569 4.870000e-09 73.1
14 TraesCS5D01G477700 chr7D 93.103 232 13 2 2 231 49806823 49806593 1.560000e-88 337.0
15 TraesCS5D01G477700 chr2D 93.103 232 12 3 2 230 76557702 76557932 1.560000e-88 337.0
16 TraesCS5D01G477700 chr2D 92.672 232 15 2 2 231 618294546 618294777 2.020000e-87 333.0
17 TraesCS5D01G477700 chr3B 93.013 229 16 0 2 230 368612569 368612341 5.620000e-88 335.0
18 TraesCS5D01G477700 chr6D 92.241 232 16 1 2 231 28476701 28476932 9.410000e-86 327.0
19 TraesCS5D01G477700 chr1D 92.208 231 16 1 2 230 10673145 10673375 3.380000e-85 326.0
20 TraesCS5D01G477700 chr7B 91.880 234 15 3 2 232 652145374 652145142 1.220000e-84 324.0
21 TraesCS5D01G477700 chr6B 91.880 234 15 3 1 231 508172426 508172194 1.220000e-84 324.0
22 TraesCS5D01G477700 chr2B 74.667 525 75 29 1028 1531 763318926 763318439 2.790000e-41 180.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G477700 chr5D 516815179 516818694 3515 False 6493.000000 6493 100.0000 1 3516 1 chr5D.!!$F1 3515
1 TraesCS5D01G477700 chr5B 649400754 649404068 3314 False 1478.333333 3267 92.2610 264 3516 3 chr5B.!!$F2 3252
2 TraesCS5D01G477700 chr5A 644132469 644135959 3490 False 828.750000 2104 89.4530 247 3513 4 chr5A.!!$F1 3266
3 TraesCS5D01G477700 chr1B 34727857 34731585 3728 True 469.620000 1565 88.3798 1710 3476 5 chr1B.!!$R1 1766

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
175 176 0.024491 CGTGTGTGCGCGTTTATAGG 59.976 55.0 8.43 0.00 42.94 2.57 F
711 740 0.037232 TCGACTGCTCGAGACAGAGA 60.037 55.0 30.59 25.63 44.14 3.10 F
1267 1570 0.101759 CTCTGCTCTGCTCTGCTCTC 59.898 60.0 0.00 0.00 0.00 3.20 F
1415 1720 0.304705 GTTGCATAAGGGATGACGCG 59.695 55.0 3.53 3.53 37.82 6.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1283 1586 0.179248 GCAGTAAACGCGTGCTTCTC 60.179 55.000 14.98 1.6 34.23 2.87 R
1900 2241 0.249489 CCCGGCTTATGTCTTCCTCG 60.249 60.000 0.00 0.0 0.00 4.63 R
2332 3209 1.479389 CCAACAAAGGCCAGGAAGTCT 60.479 52.381 5.01 0.0 0.00 3.24 R
3299 4307 1.737201 GCCGAGAGCTCCTTACCTC 59.263 63.158 10.93 0.0 38.99 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 5.901552 TGAATTTATTTCAGGATTTCCGGC 58.098 37.500 0.00 0.00 39.44 6.13
40 41 4.568152 ATTTATTTCAGGATTTCCGGCG 57.432 40.909 0.00 0.00 42.08 6.46
41 42 2.992124 TATTTCAGGATTTCCGGCGA 57.008 45.000 9.30 0.00 42.08 5.54
42 43 2.348411 ATTTCAGGATTTCCGGCGAT 57.652 45.000 9.30 0.00 42.08 4.58
43 44 1.378531 TTTCAGGATTTCCGGCGATG 58.621 50.000 9.30 0.00 42.08 3.84
44 45 1.095228 TTCAGGATTTCCGGCGATGC 61.095 55.000 9.30 0.00 42.08 3.91
45 46 2.588877 AGGATTTCCGGCGATGCG 60.589 61.111 9.30 0.00 42.08 4.73
56 57 2.711311 CGATGCGCATTCAGTGGG 59.289 61.111 26.12 4.47 43.21 4.61
57 58 1.815003 CGATGCGCATTCAGTGGGA 60.815 57.895 26.12 0.00 43.02 4.37
58 59 1.769098 CGATGCGCATTCAGTGGGAG 61.769 60.000 26.12 4.12 43.02 4.30
59 60 1.442526 GATGCGCATTCAGTGGGAGG 61.443 60.000 26.12 0.00 43.02 4.30
60 61 1.913951 ATGCGCATTCAGTGGGAGGA 61.914 55.000 19.28 0.00 43.02 3.71
61 62 1.817099 GCGCATTCAGTGGGAGGAG 60.817 63.158 0.30 0.00 43.02 3.69
62 63 1.900351 CGCATTCAGTGGGAGGAGA 59.100 57.895 0.00 0.00 43.02 3.71
63 64 0.460987 CGCATTCAGTGGGAGGAGAC 60.461 60.000 0.00 0.00 43.02 3.36
64 65 0.460987 GCATTCAGTGGGAGGAGACG 60.461 60.000 0.00 0.00 0.00 4.18
65 66 0.898320 CATTCAGTGGGAGGAGACGT 59.102 55.000 0.00 0.00 0.00 4.34
66 67 1.276421 CATTCAGTGGGAGGAGACGTT 59.724 52.381 0.00 0.00 0.00 3.99
67 68 0.966920 TTCAGTGGGAGGAGACGTTC 59.033 55.000 0.00 0.00 0.00 3.95
88 89 4.649845 TCGATGACGAGGTGCCTA 57.350 55.556 0.00 0.00 43.81 3.93
89 90 2.104267 TCGATGACGAGGTGCCTAC 58.896 57.895 0.00 0.00 43.81 3.18
90 91 1.298413 CGATGACGAGGTGCCTACG 60.298 63.158 0.00 0.00 42.66 3.51
91 92 1.712018 CGATGACGAGGTGCCTACGA 61.712 60.000 13.88 0.00 42.66 3.43
92 93 0.669077 GATGACGAGGTGCCTACGAT 59.331 55.000 13.88 2.36 0.00 3.73
93 94 0.385751 ATGACGAGGTGCCTACGATG 59.614 55.000 13.88 0.00 0.00 3.84
94 95 0.678684 TGACGAGGTGCCTACGATGA 60.679 55.000 13.88 0.00 0.00 2.92
95 96 0.248539 GACGAGGTGCCTACGATGAC 60.249 60.000 13.88 0.00 0.00 3.06
96 97 0.680280 ACGAGGTGCCTACGATGACT 60.680 55.000 13.88 0.00 0.00 3.41
97 98 0.456221 CGAGGTGCCTACGATGACTT 59.544 55.000 0.00 0.00 0.00 3.01
98 99 1.534175 CGAGGTGCCTACGATGACTTC 60.534 57.143 0.00 0.00 0.00 3.01
113 114 7.867579 CGATGACTTCGTAAATTTCAAGATG 57.132 36.000 0.00 0.00 43.01 2.90
114 115 7.675478 CGATGACTTCGTAAATTTCAAGATGA 58.325 34.615 0.00 0.00 43.01 2.92
115 116 8.331022 CGATGACTTCGTAAATTTCAAGATGAT 58.669 33.333 0.00 0.00 43.01 2.45
119 120 9.374960 GACTTCGTAAATTTCAAGATGATATGC 57.625 33.333 0.00 0.00 0.00 3.14
120 121 8.345565 ACTTCGTAAATTTCAAGATGATATGCC 58.654 33.333 0.00 0.00 0.00 4.40
121 122 6.887368 TCGTAAATTTCAAGATGATATGCCG 58.113 36.000 0.00 0.00 0.00 5.69
122 123 6.073276 TCGTAAATTTCAAGATGATATGCCGG 60.073 38.462 0.00 0.00 0.00 6.13
123 124 4.510038 AATTTCAAGATGATATGCCGGC 57.490 40.909 22.73 22.73 0.00 6.13
124 125 2.936919 TTCAAGATGATATGCCGGCT 57.063 45.000 29.70 15.76 0.00 5.52
125 126 2.462456 TCAAGATGATATGCCGGCTC 57.538 50.000 29.70 17.89 0.00 4.70
126 127 1.693606 TCAAGATGATATGCCGGCTCA 59.306 47.619 29.70 23.34 0.00 4.26
127 128 2.074576 CAAGATGATATGCCGGCTCAG 58.925 52.381 29.70 7.35 0.00 3.35
128 129 1.346062 AGATGATATGCCGGCTCAGT 58.654 50.000 29.70 13.44 0.00 3.41
129 130 1.274728 AGATGATATGCCGGCTCAGTC 59.725 52.381 29.70 19.55 0.00 3.51
130 131 1.274728 GATGATATGCCGGCTCAGTCT 59.725 52.381 29.70 8.26 0.00 3.24
131 132 1.123077 TGATATGCCGGCTCAGTCTT 58.877 50.000 29.70 5.10 0.00 3.01
132 133 1.486310 TGATATGCCGGCTCAGTCTTT 59.514 47.619 29.70 3.35 0.00 2.52
133 134 2.139118 GATATGCCGGCTCAGTCTTTC 58.861 52.381 29.70 9.22 0.00 2.62
134 135 0.179111 TATGCCGGCTCAGTCTTTCG 60.179 55.000 29.70 0.00 0.00 3.46
135 136 2.815647 GCCGGCTCAGTCTTTCGG 60.816 66.667 22.15 0.00 43.13 4.30
136 137 2.970639 CCGGCTCAGTCTTTCGGA 59.029 61.111 0.00 0.00 42.94 4.55
137 138 1.153745 CCGGCTCAGTCTTTCGGAG 60.154 63.158 0.00 0.00 42.94 4.63
138 139 1.153745 CGGCTCAGTCTTTCGGAGG 60.154 63.158 0.00 0.00 38.48 4.30
139 140 1.878656 CGGCTCAGTCTTTCGGAGGT 61.879 60.000 0.00 0.00 38.48 3.85
140 141 0.390472 GGCTCAGTCTTTCGGAGGTG 60.390 60.000 0.00 0.00 38.48 4.00
141 142 1.016653 GCTCAGTCTTTCGGAGGTGC 61.017 60.000 0.00 0.00 38.48 5.01
142 143 0.605589 CTCAGTCTTTCGGAGGTGCT 59.394 55.000 0.00 0.00 35.32 4.40
143 144 0.603569 TCAGTCTTTCGGAGGTGCTC 59.396 55.000 0.00 0.00 0.00 4.26
144 145 0.318441 CAGTCTTTCGGAGGTGCTCA 59.682 55.000 0.00 0.00 31.08 4.26
145 146 1.066573 CAGTCTTTCGGAGGTGCTCAT 60.067 52.381 0.00 0.00 31.08 2.90
146 147 2.166459 CAGTCTTTCGGAGGTGCTCATA 59.834 50.000 0.00 0.00 31.08 2.15
147 148 2.428890 AGTCTTTCGGAGGTGCTCATAG 59.571 50.000 0.00 0.00 31.08 2.23
148 149 2.427453 GTCTTTCGGAGGTGCTCATAGA 59.573 50.000 0.00 0.00 31.08 1.98
149 150 3.096852 TCTTTCGGAGGTGCTCATAGAA 58.903 45.455 0.00 0.00 31.08 2.10
150 151 3.131223 TCTTTCGGAGGTGCTCATAGAAG 59.869 47.826 0.00 0.00 31.08 2.85
151 152 2.145397 TCGGAGGTGCTCATAGAAGT 57.855 50.000 0.00 0.00 31.08 3.01
152 153 3.292492 TCGGAGGTGCTCATAGAAGTA 57.708 47.619 0.00 0.00 31.08 2.24
153 154 3.215151 TCGGAGGTGCTCATAGAAGTAG 58.785 50.000 0.00 0.00 31.08 2.57
154 155 2.294791 CGGAGGTGCTCATAGAAGTAGG 59.705 54.545 0.00 0.00 31.08 3.18
155 156 3.301274 GGAGGTGCTCATAGAAGTAGGT 58.699 50.000 0.00 0.00 31.08 3.08
156 157 3.319689 GGAGGTGCTCATAGAAGTAGGTC 59.680 52.174 0.00 0.00 31.08 3.85
157 158 2.952978 AGGTGCTCATAGAAGTAGGTCG 59.047 50.000 0.00 0.00 0.00 4.79
158 159 2.688958 GGTGCTCATAGAAGTAGGTCGT 59.311 50.000 0.00 0.00 0.00 4.34
159 160 3.489398 GGTGCTCATAGAAGTAGGTCGTG 60.489 52.174 0.00 0.00 0.00 4.35
160 161 3.128938 GTGCTCATAGAAGTAGGTCGTGT 59.871 47.826 0.00 0.00 0.00 4.49
161 162 3.128764 TGCTCATAGAAGTAGGTCGTGTG 59.871 47.826 0.00 0.00 0.00 3.82
162 163 3.128938 GCTCATAGAAGTAGGTCGTGTGT 59.871 47.826 0.00 0.00 0.00 3.72
163 164 4.663166 CTCATAGAAGTAGGTCGTGTGTG 58.337 47.826 0.00 0.00 0.00 3.82
164 165 3.119602 TCATAGAAGTAGGTCGTGTGTGC 60.120 47.826 0.00 0.00 0.00 4.57
165 166 0.039437 AGAAGTAGGTCGTGTGTGCG 60.039 55.000 0.00 0.00 0.00 5.34
166 167 1.615107 GAAGTAGGTCGTGTGTGCGC 61.615 60.000 0.00 0.00 0.00 6.09
174 175 3.468039 CGTGTGTGCGCGTTTATAG 57.532 52.632 8.43 0.00 42.94 1.31
175 176 0.024491 CGTGTGTGCGCGTTTATAGG 59.976 55.000 8.43 0.00 42.94 2.57
176 177 0.372334 GTGTGTGCGCGTTTATAGGG 59.628 55.000 8.43 0.00 0.00 3.53
177 178 0.741574 TGTGTGCGCGTTTATAGGGG 60.742 55.000 8.43 0.00 0.00 4.79
178 179 0.741927 GTGTGCGCGTTTATAGGGGT 60.742 55.000 8.43 0.00 0.00 4.95
179 180 0.741574 TGTGCGCGTTTATAGGGGTG 60.742 55.000 8.43 0.00 0.00 4.61
180 181 0.460635 GTGCGCGTTTATAGGGGTGA 60.461 55.000 8.43 0.00 0.00 4.02
181 182 0.179094 TGCGCGTTTATAGGGGTGAG 60.179 55.000 8.43 0.00 0.00 3.51
182 183 0.179092 GCGCGTTTATAGGGGTGAGT 60.179 55.000 8.43 0.00 0.00 3.41
183 184 1.567504 CGCGTTTATAGGGGTGAGTG 58.432 55.000 0.00 0.00 0.00 3.51
184 185 1.134907 CGCGTTTATAGGGGTGAGTGT 60.135 52.381 0.00 0.00 0.00 3.55
185 186 2.099592 CGCGTTTATAGGGGTGAGTGTA 59.900 50.000 0.00 0.00 0.00 2.90
186 187 3.243636 CGCGTTTATAGGGGTGAGTGTAT 60.244 47.826 0.00 0.00 0.00 2.29
187 188 4.056050 GCGTTTATAGGGGTGAGTGTATG 58.944 47.826 0.00 0.00 0.00 2.39
188 189 4.056050 CGTTTATAGGGGTGAGTGTATGC 58.944 47.826 0.00 0.00 0.00 3.14
189 190 4.442332 CGTTTATAGGGGTGAGTGTATGCA 60.442 45.833 0.00 0.00 0.00 3.96
190 191 4.682778 TTATAGGGGTGAGTGTATGCAC 57.317 45.455 5.71 5.71 45.57 4.57
202 203 4.631133 GTGTATGCACGTGTATATGAGC 57.369 45.455 25.81 15.09 35.75 4.26
203 204 3.119628 GTGTATGCACGTGTATATGAGCG 59.880 47.826 25.81 0.00 35.75 5.03
204 205 2.509052 ATGCACGTGTATATGAGCGT 57.491 45.000 18.03 0.00 38.14 5.07
205 206 2.287393 TGCACGTGTATATGAGCGTT 57.713 45.000 18.38 0.00 35.25 4.84
206 207 2.612604 TGCACGTGTATATGAGCGTTT 58.387 42.857 18.38 0.00 35.25 3.60
207 208 2.347150 TGCACGTGTATATGAGCGTTTG 59.653 45.455 18.38 0.00 35.25 2.93
208 209 2.845764 GCACGTGTATATGAGCGTTTGC 60.846 50.000 18.38 0.00 43.24 3.68
219 220 3.519774 GCGTTTGCGTTTGTACTGT 57.480 47.368 0.00 0.00 40.81 3.55
220 221 1.109296 GCGTTTGCGTTTGTACTGTG 58.891 50.000 0.00 0.00 40.81 3.66
221 222 1.530236 GCGTTTGCGTTTGTACTGTGT 60.530 47.619 0.00 0.00 40.81 3.72
222 223 2.776330 CGTTTGCGTTTGTACTGTGTT 58.224 42.857 0.00 0.00 0.00 3.32
223 224 3.784851 GCGTTTGCGTTTGTACTGTGTTA 60.785 43.478 0.00 0.00 40.81 2.41
224 225 4.332788 CGTTTGCGTTTGTACTGTGTTAA 58.667 39.130 0.00 0.00 0.00 2.01
225 226 4.787083 CGTTTGCGTTTGTACTGTGTTAAA 59.213 37.500 0.00 0.00 0.00 1.52
226 227 5.283247 CGTTTGCGTTTGTACTGTGTTAAAA 59.717 36.000 0.00 0.00 0.00 1.52
227 228 6.183359 CGTTTGCGTTTGTACTGTGTTAAAAA 60.183 34.615 0.00 0.00 0.00 1.94
252 253 7.623268 AAATTCGAAGCACAAAATTAGTGTC 57.377 32.000 3.35 5.51 39.17 3.67
254 255 3.805422 TCGAAGCACAAAATTAGTGTCGT 59.195 39.130 16.42 7.88 37.04 4.34
259 260 6.366315 AGCACAAAATTAGTGTCGTTGTTA 57.634 33.333 11.28 0.00 39.17 2.41
262 263 7.918562 AGCACAAAATTAGTGTCGTTGTTATTT 59.081 29.630 11.28 0.00 39.17 1.40
270 271 9.624697 ATTAGTGTCGTTGTTATTTTCGTAGTA 57.375 29.630 0.00 0.00 0.00 1.82
379 389 3.236528 CCGAGTTCGAAAACAAACAAACG 59.763 43.478 0.00 0.00 43.02 3.60
380 390 4.083133 CGAGTTCGAAAACAAACAAACGA 58.917 39.130 0.00 0.00 43.02 3.85
460 487 1.789576 AACATCGAAGGGTGGGCCTT 61.790 55.000 4.53 0.00 34.45 4.35
538 567 2.594592 GCGCCTCCCACTGTTTGT 60.595 61.111 0.00 0.00 0.00 2.83
577 606 3.680786 CTCCGTGGCCGTCACAGA 61.681 66.667 3.63 0.00 46.36 3.41
594 623 0.395311 AGATCGGTAACCTCGCTGGA 60.395 55.000 1.32 0.00 39.71 3.86
620 649 4.592192 CGGCCGCCTGATGATCGT 62.592 66.667 14.67 0.00 0.00 3.73
634 663 4.874977 TCGTGCCACGCGAACACA 62.875 61.111 15.93 1.84 43.38 3.72
635 664 3.711842 CGTGCCACGCGAACACAT 61.712 61.111 15.93 0.00 39.94 3.21
636 665 2.127270 GTGCCACGCGAACACATG 60.127 61.111 15.93 0.00 34.43 3.21
639 668 2.127270 CCACGCGAACACATGCAC 60.127 61.111 15.93 0.00 0.00 4.57
640 669 2.630872 CACGCGAACACATGCACA 59.369 55.556 15.93 0.00 0.00 4.57
643 672 2.562912 GCGAACACATGCACAGGG 59.437 61.111 0.00 0.00 0.00 4.45
644 673 2.981560 GCGAACACATGCACAGGGG 61.982 63.158 0.00 0.00 0.00 4.79
648 677 4.371417 CACATGCACAGGGGCCCT 62.371 66.667 22.67 22.67 0.00 5.19
656 685 3.330720 CAGGGGCCCTCGACCTTT 61.331 66.667 26.02 0.00 30.66 3.11
657 686 3.009714 AGGGGCCCTCGACCTTTC 61.010 66.667 22.67 0.26 0.00 2.62
660 689 3.327404 GGCCCTCGACCTTTCCCA 61.327 66.667 0.00 0.00 0.00 4.37
661 690 2.680370 GGCCCTCGACCTTTCCCAT 61.680 63.158 0.00 0.00 0.00 4.00
662 691 1.342672 GGCCCTCGACCTTTCCCATA 61.343 60.000 0.00 0.00 0.00 2.74
663 692 0.765510 GCCCTCGACCTTTCCCATAT 59.234 55.000 0.00 0.00 0.00 1.78
665 694 2.851195 CCCTCGACCTTTCCCATATTG 58.149 52.381 0.00 0.00 0.00 1.90
666 695 2.487265 CCCTCGACCTTTCCCATATTGG 60.487 54.545 0.00 0.00 37.25 3.16
667 696 2.172717 CCTCGACCTTTCCCATATTGGT 59.827 50.000 0.00 0.00 35.17 3.67
668 697 3.206150 CTCGACCTTTCCCATATTGGTG 58.794 50.000 0.00 0.00 35.17 4.17
669 698 2.092646 TCGACCTTTCCCATATTGGTGG 60.093 50.000 0.00 0.00 35.17 4.61
670 699 2.092646 CGACCTTTCCCATATTGGTGGA 60.093 50.000 8.45 0.00 42.02 4.02
671 700 3.288092 GACCTTTCCCATATTGGTGGAC 58.712 50.000 8.45 1.47 42.02 4.02
672 701 2.652348 ACCTTTCCCATATTGGTGGACA 59.348 45.455 8.45 0.00 42.02 4.02
673 702 3.023832 CCTTTCCCATATTGGTGGACAC 58.976 50.000 0.00 0.00 42.02 3.67
696 725 2.279120 CGCAGGATCCAGCTCGAC 60.279 66.667 24.81 0.00 0.00 4.20
699 728 1.227205 CAGGATCCAGCTCGACTGC 60.227 63.158 15.82 0.00 45.78 4.40
702 731 1.299014 GATCCAGCTCGACTGCTCG 60.299 63.158 8.85 0.00 45.78 5.03
703 732 1.719725 GATCCAGCTCGACTGCTCGA 61.720 60.000 8.85 3.47 46.85 4.04
709 738 4.695560 TCGACTGCTCGAGACAGA 57.304 55.556 30.59 15.03 44.14 3.41
710 739 2.461416 TCGACTGCTCGAGACAGAG 58.539 57.895 30.59 24.43 44.14 3.35
711 740 0.037232 TCGACTGCTCGAGACAGAGA 60.037 55.000 30.59 25.63 44.14 3.10
712 741 0.373370 CGACTGCTCGAGACAGAGAG 59.627 60.000 30.59 20.61 43.06 3.20
717 746 3.994729 CTCGAGACAGAGAGCAGTG 57.005 57.895 6.58 0.00 40.57 3.66
718 747 1.164411 CTCGAGACAGAGAGCAGTGT 58.836 55.000 6.58 0.00 40.57 3.55
719 748 0.877743 TCGAGACAGAGAGCAGTGTG 59.122 55.000 0.00 0.00 0.00 3.82
720 749 0.877743 CGAGACAGAGAGCAGTGTGA 59.122 55.000 0.00 0.00 0.00 3.58
721 750 1.472082 CGAGACAGAGAGCAGTGTGAT 59.528 52.381 0.00 0.00 0.00 3.06
722 751 2.094803 CGAGACAGAGAGCAGTGTGATT 60.095 50.000 0.00 0.00 0.00 2.57
723 752 3.510719 GAGACAGAGAGCAGTGTGATTC 58.489 50.000 0.00 0.00 0.00 2.52
724 753 2.094803 AGACAGAGAGCAGTGTGATTCG 60.095 50.000 0.00 0.00 0.00 3.34
726 755 2.297315 ACAGAGAGCAGTGTGATTCGAA 59.703 45.455 0.00 0.00 0.00 3.71
728 757 2.094286 AGAGAGCAGTGTGATTCGAAGG 60.094 50.000 3.35 0.00 0.00 3.46
739 768 2.208431 GATTCGAAGGCCTGATGTCTG 58.792 52.381 5.69 0.00 0.00 3.51
742 771 2.666317 TCGAAGGCCTGATGTCTGATA 58.334 47.619 5.69 0.00 0.00 2.15
744 773 3.450817 TCGAAGGCCTGATGTCTGATAAA 59.549 43.478 5.69 0.00 0.00 1.40
746 775 3.185246 AGGCCTGATGTCTGATAAACG 57.815 47.619 3.11 0.00 0.00 3.60
749 778 2.286294 GCCTGATGTCTGATAAACGCAG 59.714 50.000 0.00 0.00 34.71 5.18
752 781 4.440663 CCTGATGTCTGATAAACGCAGAGA 60.441 45.833 0.00 0.00 42.57 3.10
753 782 4.424626 TGATGTCTGATAAACGCAGAGAC 58.575 43.478 0.00 0.00 42.57 3.36
754 783 2.863739 TGTCTGATAAACGCAGAGACG 58.136 47.619 0.00 0.00 42.57 4.18
755 784 2.186076 GTCTGATAAACGCAGAGACGG 58.814 52.381 0.00 0.00 42.57 4.79
759 788 1.404391 GATAAACGCAGAGACGGAGGA 59.596 52.381 0.00 0.00 37.37 3.71
762 791 1.867919 AACGCAGAGACGGAGGACTG 61.868 60.000 0.00 0.00 37.37 3.51
763 792 2.041115 CGCAGAGACGGAGGACTGA 61.041 63.158 0.00 0.00 32.90 3.41
765 794 0.820871 GCAGAGACGGAGGACTGATT 59.179 55.000 0.00 0.00 32.90 2.57
766 795 1.205893 GCAGAGACGGAGGACTGATTT 59.794 52.381 0.00 0.00 32.90 2.17
767 796 2.886081 CAGAGACGGAGGACTGATTTG 58.114 52.381 0.00 0.00 32.90 2.32
768 797 1.205893 AGAGACGGAGGACTGATTTGC 59.794 52.381 0.00 0.00 0.00 3.68
769 798 1.205893 GAGACGGAGGACTGATTTGCT 59.794 52.381 0.00 0.00 0.00 3.91
770 799 2.427453 GAGACGGAGGACTGATTTGCTA 59.573 50.000 0.00 0.00 0.00 3.49
772 801 2.930682 GACGGAGGACTGATTTGCTAAC 59.069 50.000 0.00 0.00 0.00 2.34
773 802 2.301870 ACGGAGGACTGATTTGCTAACA 59.698 45.455 0.00 0.00 0.00 2.41
927 1020 1.215117 GAAGCTCTCACGCTCTGCT 59.785 57.895 0.00 0.00 39.86 4.24
1038 1144 1.305633 CAGCTCCTCCTCCTCCACA 60.306 63.158 0.00 0.00 0.00 4.17
1039 1145 0.690411 CAGCTCCTCCTCCTCCACAT 60.690 60.000 0.00 0.00 0.00 3.21
1074 1180 0.764369 TGTGTGCTCACCTCCTCCTT 60.764 55.000 15.83 0.00 43.26 3.36
1181 1477 1.649664 AGCGCTGCTTTAGATGTCTG 58.350 50.000 10.39 0.00 33.89 3.51
1223 1519 3.048941 GCGTTACGCGAGAGGTCCT 62.049 63.158 15.43 0.00 44.55 3.85
1238 1541 2.202395 TCCTTGCAGTTTGCTGGCC 61.202 57.895 0.00 0.00 45.31 5.36
1265 1568 1.142314 CCTCTGCTCTGCTCTGCTC 59.858 63.158 0.00 0.00 0.00 4.26
1266 1569 1.324740 CCTCTGCTCTGCTCTGCTCT 61.325 60.000 0.00 0.00 0.00 4.09
1267 1570 0.101759 CTCTGCTCTGCTCTGCTCTC 59.898 60.000 0.00 0.00 0.00 3.20
1268 1571 1.142314 CTGCTCTGCTCTGCTCTCC 59.858 63.158 0.00 0.00 0.00 3.71
1269 1572 1.305129 TGCTCTGCTCTGCTCTCCT 60.305 57.895 0.00 0.00 0.00 3.69
1270 1573 1.321805 TGCTCTGCTCTGCTCTCCTC 61.322 60.000 0.00 0.00 0.00 3.71
1283 1586 2.686470 TCCTCTGCTCCAGGGCTG 60.686 66.667 0.00 0.00 29.10 4.85
1341 1644 2.189594 TCAGGAGTTCAGGTTGCATG 57.810 50.000 0.00 0.00 0.00 4.06
1415 1720 0.304705 GTTGCATAAGGGATGACGCG 59.695 55.000 3.53 3.53 37.82 6.01
1460 1768 4.033684 GCTAGAGCAAGAAATGAAATGCG 58.966 43.478 0.00 0.00 41.59 4.73
1481 1809 2.498167 GATGCTCTGTGTTTCCTGTGT 58.502 47.619 0.00 0.00 0.00 3.72
1489 1817 5.465935 TCTGTGTTTCCTGTGTTGTTTTTC 58.534 37.500 0.00 0.00 0.00 2.29
1512 1840 4.275689 CACAGTGTGGAGCAGAAACATTAA 59.724 41.667 15.86 0.00 0.00 1.40
1580 1920 2.375174 TGGGGGCTCATGTGGATAATAC 59.625 50.000 0.00 0.00 0.00 1.89
1581 1921 2.290960 GGGGGCTCATGTGGATAATACC 60.291 54.545 0.00 0.00 0.00 2.73
1582 1922 2.615493 GGGGCTCATGTGGATAATACCG 60.615 54.545 0.00 0.00 0.00 4.02
1584 1924 2.615493 GGCTCATGTGGATAATACCGGG 60.615 54.545 6.32 0.00 0.00 5.73
1661 2001 8.929260 ATTCATGCTACTGAATTCCATCATTA 57.071 30.769 2.27 0.00 41.89 1.90
1705 2045 5.978934 AATTTGACTGCTTTGCTTTTCTG 57.021 34.783 0.00 0.00 0.00 3.02
1706 2046 3.441496 TTGACTGCTTTGCTTTTCTGG 57.559 42.857 0.00 0.00 0.00 3.86
1708 2048 3.225104 TGACTGCTTTGCTTTTCTGGAT 58.775 40.909 0.00 0.00 0.00 3.41
1723 2064 2.041620 TCTGGATCAAAGGTTGGAAGGG 59.958 50.000 0.00 0.00 0.00 3.95
1900 2241 2.016704 CCACTGCGACGTCACAGTC 61.017 63.158 30.89 8.67 45.15 3.51
2116 2993 2.294078 CCCGAGCAAGAAGGGGTCT 61.294 63.158 0.00 0.00 41.43 3.85
2332 3209 2.507484 CAAAAGGGTGATGCAGTGAGA 58.493 47.619 0.00 0.00 0.00 3.27
2659 3545 7.434492 TCTATATTAGTGCTTAAGGACAGTGC 58.566 38.462 26.40 1.80 38.96 4.40
2778 3667 8.204836 AGTATATCTGCGAAATAGAAACCAGTT 58.795 33.333 0.00 0.00 0.00 3.16
2780 3669 8.958119 ATATCTGCGAAATAGAAACCAGTTAA 57.042 30.769 0.00 0.00 0.00 2.01
2785 3674 6.013689 GCGAAATAGAAACCAGTTAACTTCG 58.986 40.000 5.07 9.72 0.00 3.79
2807 3696 4.309933 GAAAATTTGAGTTGGAAGCCCTG 58.690 43.478 0.00 0.00 0.00 4.45
2843 3739 9.932207 ATATGATTTTCTCAGAATTTTTGTGCA 57.068 25.926 0.00 0.00 37.28 4.57
2924 3822 8.064814 GTGTGTTTAGTTCAGAAGAATCTTGAC 58.935 37.037 0.00 0.00 35.92 3.18
2925 3823 7.226720 TGTGTTTAGTTCAGAAGAATCTTGACC 59.773 37.037 0.00 0.00 35.92 4.02
2926 3824 7.226720 GTGTTTAGTTCAGAAGAATCTTGACCA 59.773 37.037 0.00 0.00 35.92 4.02
2932 3830 5.333581 TCAGAAGAATCTTGACCAGGTAGA 58.666 41.667 0.00 0.00 32.03 2.59
3007 3906 8.310382 AGGCTTCTATCAATGTATCATCAGTAC 58.690 37.037 0.00 0.00 0.00 2.73
3015 3914 8.837788 TCAATGTATCATCAGTACCAATCATC 57.162 34.615 0.00 0.00 0.00 2.92
3016 3915 8.654094 TCAATGTATCATCAGTACCAATCATCT 58.346 33.333 0.00 0.00 0.00 2.90
3017 3916 9.933723 CAATGTATCATCAGTACCAATCATCTA 57.066 33.333 0.00 0.00 0.00 1.98
3018 3917 9.935241 AATGTATCATCAGTACCAATCATCTAC 57.065 33.333 0.00 0.00 0.00 2.59
3020 3919 9.147732 TGTATCATCAGTACCAATCATCTACTT 57.852 33.333 0.00 0.00 0.00 2.24
3077 3980 9.755804 CTCTCTAAATAGACACTGCAATTATCA 57.244 33.333 0.00 0.00 0.00 2.15
3102 4059 2.095768 ACGTACATCATTGTTGCTGCAC 60.096 45.455 0.00 0.00 37.28 4.57
3103 4060 2.728846 CGTACATCATTGTTGCTGCACC 60.729 50.000 0.00 0.00 37.28 5.01
3216 4224 1.153349 GGGATTGTCCGAGTCAGCC 60.153 63.158 0.00 0.00 37.43 4.85
3299 4307 3.752747 TGTGTTCTGTCCACATATGCTTG 59.247 43.478 1.58 0.00 37.88 4.01
3429 5774 1.476085 AGATCTCCTTCAGACACAGCG 59.524 52.381 0.00 0.00 32.26 5.18
3436 5781 2.610433 CTTCAGACACAGCGATGCTTA 58.390 47.619 0.00 0.00 36.40 3.09
3446 5791 1.278238 GCGATGCTTACGTTGCTAGT 58.722 50.000 13.06 1.83 38.91 2.57
3447 5792 2.456989 GCGATGCTTACGTTGCTAGTA 58.543 47.619 13.06 0.00 38.91 1.82
3448 5793 2.215812 GCGATGCTTACGTTGCTAGTAC 59.784 50.000 13.06 0.00 38.91 2.73
3492 5837 2.045524 ACCTCTGTGCATCTATCTGGG 58.954 52.381 0.00 0.00 0.00 4.45
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
13 14 8.141268 GCCGGAAATCCTGAAATAAATTCATAA 58.859 33.333 5.05 0.00 46.62 1.90
14 15 7.521423 CGCCGGAAATCCTGAAATAAATTCATA 60.521 37.037 5.05 0.00 46.62 2.15
15 16 6.515832 GCCGGAAATCCTGAAATAAATTCAT 58.484 36.000 5.05 0.00 46.62 2.57
16 17 5.449862 CGCCGGAAATCCTGAAATAAATTCA 60.450 40.000 5.05 0.00 45.71 2.57
17 18 4.976116 CGCCGGAAATCCTGAAATAAATTC 59.024 41.667 5.05 0.00 38.60 2.17
18 19 4.642885 TCGCCGGAAATCCTGAAATAAATT 59.357 37.500 5.05 0.00 0.00 1.82
19 20 4.204012 TCGCCGGAAATCCTGAAATAAAT 58.796 39.130 5.05 0.00 0.00 1.40
20 21 3.611970 TCGCCGGAAATCCTGAAATAAA 58.388 40.909 5.05 0.00 0.00 1.40
21 22 3.269538 TCGCCGGAAATCCTGAAATAA 57.730 42.857 5.05 0.00 0.00 1.40
22 23 2.992124 TCGCCGGAAATCCTGAAATA 57.008 45.000 5.05 0.00 0.00 1.40
23 24 1.949525 CATCGCCGGAAATCCTGAAAT 59.050 47.619 5.05 0.00 0.00 2.17
24 25 1.378531 CATCGCCGGAAATCCTGAAA 58.621 50.000 5.05 0.00 0.00 2.69
25 26 1.095228 GCATCGCCGGAAATCCTGAA 61.095 55.000 5.05 0.00 0.00 3.02
26 27 1.523711 GCATCGCCGGAAATCCTGA 60.524 57.895 5.05 0.00 0.00 3.86
27 28 2.885676 CGCATCGCCGGAAATCCTG 61.886 63.158 5.05 0.00 0.00 3.86
28 29 2.588877 CGCATCGCCGGAAATCCT 60.589 61.111 5.05 0.00 0.00 3.24
39 40 1.769098 CTCCCACTGAATGCGCATCG 61.769 60.000 25.53 17.09 0.00 3.84
40 41 1.442526 CCTCCCACTGAATGCGCATC 61.443 60.000 25.53 17.12 0.00 3.91
41 42 1.452651 CCTCCCACTGAATGCGCAT 60.453 57.895 19.28 19.28 0.00 4.73
42 43 2.046023 CCTCCCACTGAATGCGCA 60.046 61.111 14.96 14.96 0.00 6.09
43 44 1.817099 CTCCTCCCACTGAATGCGC 60.817 63.158 0.00 0.00 0.00 6.09
44 45 0.460987 GTCTCCTCCCACTGAATGCG 60.461 60.000 0.00 0.00 0.00 4.73
45 46 0.460987 CGTCTCCTCCCACTGAATGC 60.461 60.000 0.00 0.00 0.00 3.56
46 47 0.898320 ACGTCTCCTCCCACTGAATG 59.102 55.000 0.00 0.00 0.00 2.67
47 48 1.550976 GAACGTCTCCTCCCACTGAAT 59.449 52.381 0.00 0.00 0.00 2.57
48 49 0.966920 GAACGTCTCCTCCCACTGAA 59.033 55.000 0.00 0.00 0.00 3.02
49 50 0.898789 GGAACGTCTCCTCCCACTGA 60.899 60.000 8.87 0.00 41.61 3.41
50 51 1.592223 GGAACGTCTCCTCCCACTG 59.408 63.158 8.87 0.00 41.61 3.66
51 52 4.115270 GGAACGTCTCCTCCCACT 57.885 61.111 8.87 0.00 41.61 4.00
70 71 0.248539 GTAGGCACCTCGTCATCGAC 60.249 60.000 0.00 0.00 41.35 4.20
71 72 1.712018 CGTAGGCACCTCGTCATCGA 61.712 60.000 0.00 0.00 44.12 3.59
72 73 1.298413 CGTAGGCACCTCGTCATCG 60.298 63.158 0.00 0.00 38.55 3.84
73 74 0.669077 ATCGTAGGCACCTCGTCATC 59.331 55.000 0.00 0.00 0.00 2.92
74 75 0.385751 CATCGTAGGCACCTCGTCAT 59.614 55.000 0.00 0.00 0.00 3.06
75 76 0.678684 TCATCGTAGGCACCTCGTCA 60.679 55.000 0.00 0.00 0.00 4.35
76 77 0.248539 GTCATCGTAGGCACCTCGTC 60.249 60.000 0.00 0.00 0.00 4.20
77 78 0.680280 AGTCATCGTAGGCACCTCGT 60.680 55.000 0.00 0.00 0.00 4.18
78 79 0.456221 AAGTCATCGTAGGCACCTCG 59.544 55.000 0.00 0.00 0.00 4.63
79 80 1.534175 CGAAGTCATCGTAGGCACCTC 60.534 57.143 0.00 0.00 46.52 3.85
80 81 0.456221 CGAAGTCATCGTAGGCACCT 59.544 55.000 0.00 0.00 46.52 4.00
81 82 2.959275 CGAAGTCATCGTAGGCACC 58.041 57.895 0.00 0.00 46.52 5.01
93 94 9.374960 GCATATCATCTTGAAATTTACGAAGTC 57.625 33.333 0.00 0.00 43.93 3.01
95 96 7.531871 CGGCATATCATCTTGAAATTTACGAAG 59.468 37.037 0.00 0.00 0.00 3.79
96 97 7.351981 CGGCATATCATCTTGAAATTTACGAA 58.648 34.615 0.00 0.00 0.00 3.85
97 98 6.073276 CCGGCATATCATCTTGAAATTTACGA 60.073 38.462 0.00 0.00 0.00 3.43
98 99 6.079763 CCGGCATATCATCTTGAAATTTACG 58.920 40.000 0.00 0.00 0.00 3.18
99 100 5.858581 GCCGGCATATCATCTTGAAATTTAC 59.141 40.000 24.80 0.00 0.00 2.01
100 101 5.769662 AGCCGGCATATCATCTTGAAATTTA 59.230 36.000 31.54 0.00 0.00 1.40
101 102 4.586001 AGCCGGCATATCATCTTGAAATTT 59.414 37.500 31.54 0.00 0.00 1.82
102 103 4.147321 AGCCGGCATATCATCTTGAAATT 58.853 39.130 31.54 0.00 0.00 1.82
103 104 3.755378 GAGCCGGCATATCATCTTGAAAT 59.245 43.478 31.54 0.06 0.00 2.17
104 105 3.141398 GAGCCGGCATATCATCTTGAAA 58.859 45.455 31.54 0.00 0.00 2.69
105 106 2.104622 TGAGCCGGCATATCATCTTGAA 59.895 45.455 31.54 0.00 0.00 2.69
106 107 1.693606 TGAGCCGGCATATCATCTTGA 59.306 47.619 31.54 0.00 0.00 3.02
107 108 2.074576 CTGAGCCGGCATATCATCTTG 58.925 52.381 31.54 7.95 0.00 3.02
108 109 1.696336 ACTGAGCCGGCATATCATCTT 59.304 47.619 31.54 3.33 0.00 2.40
109 110 1.274728 GACTGAGCCGGCATATCATCT 59.725 52.381 31.54 11.40 0.00 2.90
110 111 1.274728 AGACTGAGCCGGCATATCATC 59.725 52.381 31.54 19.98 0.00 2.92
111 112 1.346062 AGACTGAGCCGGCATATCAT 58.654 50.000 31.54 13.17 0.00 2.45
112 113 1.123077 AAGACTGAGCCGGCATATCA 58.877 50.000 31.54 22.44 0.00 2.15
113 114 2.139118 GAAAGACTGAGCCGGCATATC 58.861 52.381 31.54 18.63 0.00 1.63
114 115 1.539065 CGAAAGACTGAGCCGGCATAT 60.539 52.381 31.54 8.11 0.00 1.78
115 116 0.179111 CGAAAGACTGAGCCGGCATA 60.179 55.000 31.54 16.21 0.00 3.14
116 117 1.448540 CGAAAGACTGAGCCGGCAT 60.449 57.895 31.54 14.28 0.00 4.40
117 118 2.048222 CGAAAGACTGAGCCGGCA 60.048 61.111 31.54 7.98 0.00 5.69
118 119 2.815647 CCGAAAGACTGAGCCGGC 60.816 66.667 21.89 21.89 33.47 6.13
119 120 1.153745 CTCCGAAAGACTGAGCCGG 60.154 63.158 0.00 0.00 41.36 6.13
120 121 1.153745 CCTCCGAAAGACTGAGCCG 60.154 63.158 0.00 0.00 0.00 5.52
121 122 0.390472 CACCTCCGAAAGACTGAGCC 60.390 60.000 0.00 0.00 0.00 4.70
122 123 1.016653 GCACCTCCGAAAGACTGAGC 61.017 60.000 0.00 0.00 0.00 4.26
123 124 0.605589 AGCACCTCCGAAAGACTGAG 59.394 55.000 0.00 0.00 0.00 3.35
124 125 0.603569 GAGCACCTCCGAAAGACTGA 59.396 55.000 0.00 0.00 0.00 3.41
125 126 0.318441 TGAGCACCTCCGAAAGACTG 59.682 55.000 0.00 0.00 0.00 3.51
126 127 1.270907 ATGAGCACCTCCGAAAGACT 58.729 50.000 0.00 0.00 0.00 3.24
127 128 2.427453 TCTATGAGCACCTCCGAAAGAC 59.573 50.000 0.00 0.00 0.00 3.01
128 129 2.735151 TCTATGAGCACCTCCGAAAGA 58.265 47.619 0.00 0.00 0.00 2.52
129 130 3.118956 ACTTCTATGAGCACCTCCGAAAG 60.119 47.826 0.00 0.00 0.00 2.62
130 131 2.832129 ACTTCTATGAGCACCTCCGAAA 59.168 45.455 0.00 0.00 0.00 3.46
131 132 2.457598 ACTTCTATGAGCACCTCCGAA 58.542 47.619 0.00 0.00 0.00 4.30
132 133 2.145397 ACTTCTATGAGCACCTCCGA 57.855 50.000 0.00 0.00 0.00 4.55
133 134 2.294791 CCTACTTCTATGAGCACCTCCG 59.705 54.545 0.00 0.00 0.00 4.63
134 135 3.301274 ACCTACTTCTATGAGCACCTCC 58.699 50.000 0.00 0.00 0.00 4.30
135 136 3.003897 CGACCTACTTCTATGAGCACCTC 59.996 52.174 0.00 0.00 0.00 3.85
136 137 2.952978 CGACCTACTTCTATGAGCACCT 59.047 50.000 0.00 0.00 0.00 4.00
137 138 2.688958 ACGACCTACTTCTATGAGCACC 59.311 50.000 0.00 0.00 0.00 5.01
138 139 3.128938 ACACGACCTACTTCTATGAGCAC 59.871 47.826 0.00 0.00 0.00 4.40
139 140 3.128764 CACACGACCTACTTCTATGAGCA 59.871 47.826 0.00 0.00 0.00 4.26
140 141 3.128938 ACACACGACCTACTTCTATGAGC 59.871 47.826 0.00 0.00 0.00 4.26
141 142 4.663166 CACACACGACCTACTTCTATGAG 58.337 47.826 0.00 0.00 0.00 2.90
142 143 3.119602 GCACACACGACCTACTTCTATGA 60.120 47.826 0.00 0.00 0.00 2.15
143 144 3.179830 GCACACACGACCTACTTCTATG 58.820 50.000 0.00 0.00 0.00 2.23
144 145 2.159421 CGCACACACGACCTACTTCTAT 60.159 50.000 0.00 0.00 34.06 1.98
145 146 1.198408 CGCACACACGACCTACTTCTA 59.802 52.381 0.00 0.00 34.06 2.10
146 147 0.039437 CGCACACACGACCTACTTCT 60.039 55.000 0.00 0.00 34.06 2.85
147 148 1.615107 GCGCACACACGACCTACTTC 61.615 60.000 0.30 0.00 34.06 3.01
148 149 1.663702 GCGCACACACGACCTACTT 60.664 57.895 0.30 0.00 34.06 2.24
149 150 2.049433 GCGCACACACGACCTACT 60.049 61.111 0.30 0.00 34.06 2.57
150 151 3.467119 CGCGCACACACGACCTAC 61.467 66.667 8.75 0.00 34.06 3.18
151 152 2.957484 AAACGCGCACACACGACCTA 62.957 55.000 5.73 0.00 34.06 3.08
152 153 2.957484 TAAACGCGCACACACGACCT 62.957 55.000 5.73 0.00 34.06 3.85
153 154 1.893168 ATAAACGCGCACACACGACC 61.893 55.000 5.73 0.00 34.06 4.79
154 155 0.709467 TATAAACGCGCACACACGAC 59.291 50.000 5.73 0.00 34.06 4.34
155 156 0.986270 CTATAAACGCGCACACACGA 59.014 50.000 5.73 0.00 34.06 4.35
156 157 0.024491 CCTATAAACGCGCACACACG 59.976 55.000 5.73 0.00 0.00 4.49
157 158 0.372334 CCCTATAAACGCGCACACAC 59.628 55.000 5.73 0.00 0.00 3.82
158 159 0.741574 CCCCTATAAACGCGCACACA 60.742 55.000 5.73 0.00 0.00 3.72
159 160 0.741927 ACCCCTATAAACGCGCACAC 60.742 55.000 5.73 0.00 0.00 3.82
160 161 0.741574 CACCCCTATAAACGCGCACA 60.742 55.000 5.73 0.00 0.00 4.57
161 162 0.460635 TCACCCCTATAAACGCGCAC 60.461 55.000 5.73 0.00 0.00 5.34
162 163 0.179094 CTCACCCCTATAAACGCGCA 60.179 55.000 5.73 0.00 0.00 6.09
163 164 0.179092 ACTCACCCCTATAAACGCGC 60.179 55.000 5.73 0.00 0.00 6.86
164 165 1.134907 ACACTCACCCCTATAAACGCG 60.135 52.381 3.53 3.53 0.00 6.01
165 166 2.685850 ACACTCACCCCTATAAACGC 57.314 50.000 0.00 0.00 0.00 4.84
166 167 4.056050 GCATACACTCACCCCTATAAACG 58.944 47.826 0.00 0.00 0.00 3.60
167 168 4.814771 GTGCATACACTCACCCCTATAAAC 59.185 45.833 0.00 0.00 43.85 2.01
168 169 4.442332 CGTGCATACACTCACCCCTATAAA 60.442 45.833 0.00 0.00 45.10 1.40
169 170 3.069016 CGTGCATACACTCACCCCTATAA 59.931 47.826 0.00 0.00 45.10 0.98
170 171 2.626266 CGTGCATACACTCACCCCTATA 59.374 50.000 0.00 0.00 45.10 1.31
171 172 1.412710 CGTGCATACACTCACCCCTAT 59.587 52.381 0.00 0.00 45.10 2.57
172 173 0.821517 CGTGCATACACTCACCCCTA 59.178 55.000 0.00 0.00 45.10 3.53
173 174 1.192146 ACGTGCATACACTCACCCCT 61.192 55.000 0.00 0.00 45.10 4.79
174 175 1.019278 CACGTGCATACACTCACCCC 61.019 60.000 0.82 0.00 45.10 4.95
175 176 0.320421 ACACGTGCATACACTCACCC 60.320 55.000 17.22 0.00 45.10 4.61
176 177 2.357327 TACACGTGCATACACTCACC 57.643 50.000 17.22 0.00 45.10 4.02
177 178 5.278604 TCATATACACGTGCATACACTCAC 58.721 41.667 17.22 0.00 45.10 3.51
178 179 5.508200 TCATATACACGTGCATACACTCA 57.492 39.130 17.22 0.00 45.10 3.41
179 180 4.383052 GCTCATATACACGTGCATACACTC 59.617 45.833 17.22 0.27 45.10 3.51
180 181 4.299155 GCTCATATACACGTGCATACACT 58.701 43.478 17.22 0.00 45.10 3.55
181 182 3.119628 CGCTCATATACACGTGCATACAC 59.880 47.826 17.22 2.67 43.76 2.90
182 183 3.243267 ACGCTCATATACACGTGCATACA 60.243 43.478 17.22 2.39 37.37 2.29
183 184 3.305964 ACGCTCATATACACGTGCATAC 58.694 45.455 17.22 0.00 37.37 2.39
184 185 3.636282 ACGCTCATATACACGTGCATA 57.364 42.857 17.22 13.68 37.37 3.14
185 186 2.509052 ACGCTCATATACACGTGCAT 57.491 45.000 17.22 11.52 37.37 3.96
186 187 2.287393 AACGCTCATATACACGTGCA 57.713 45.000 17.22 2.06 39.00 4.57
187 188 2.845764 GCAAACGCTCATATACACGTGC 60.846 50.000 17.22 0.00 39.00 5.34
188 189 2.594269 CGCAAACGCTCATATACACGTG 60.594 50.000 15.48 15.48 39.00 4.49
189 190 1.586578 CGCAAACGCTCATATACACGT 59.413 47.619 0.00 0.00 41.16 4.49
190 191 1.586578 ACGCAAACGCTCATATACACG 59.413 47.619 0.00 0.00 45.53 4.49
191 192 3.651562 AACGCAAACGCTCATATACAC 57.348 42.857 0.00 0.00 45.53 2.90
192 193 3.433957 ACAAACGCAAACGCTCATATACA 59.566 39.130 0.00 0.00 45.53 2.29
193 194 3.998522 ACAAACGCAAACGCTCATATAC 58.001 40.909 0.00 0.00 45.53 1.47
194 195 4.865925 AGTACAAACGCAAACGCTCATATA 59.134 37.500 0.00 0.00 45.53 0.86
195 196 3.682858 AGTACAAACGCAAACGCTCATAT 59.317 39.130 0.00 0.00 45.53 1.78
196 197 3.061322 AGTACAAACGCAAACGCTCATA 58.939 40.909 0.00 0.00 45.53 2.15
197 198 1.871039 AGTACAAACGCAAACGCTCAT 59.129 42.857 0.00 0.00 45.53 2.90
198 199 1.004398 CAGTACAAACGCAAACGCTCA 60.004 47.619 0.00 0.00 45.53 4.26
199 200 1.004292 ACAGTACAAACGCAAACGCTC 60.004 47.619 0.00 0.00 45.53 5.03
200 201 1.011333 ACAGTACAAACGCAAACGCT 58.989 45.000 0.00 0.00 45.53 5.07
201 202 1.109296 CACAGTACAAACGCAAACGC 58.891 50.000 0.00 0.00 45.53 4.84
203 204 6.614331 TTTTAACACAGTACAAACGCAAAC 57.386 33.333 0.00 0.00 0.00 2.93
226 227 8.419076 ACACTAATTTTGTGCTTCGAATTTTT 57.581 26.923 10.31 0.00 38.86 1.94
227 228 7.096640 CGACACTAATTTTGTGCTTCGAATTTT 60.097 33.333 14.30 0.00 36.61 1.82
228 229 6.359617 CGACACTAATTTTGTGCTTCGAATTT 59.640 34.615 14.30 0.00 36.61 1.82
229 230 5.851177 CGACACTAATTTTGTGCTTCGAATT 59.149 36.000 14.30 0.00 36.61 2.17
230 231 5.049680 ACGACACTAATTTTGTGCTTCGAAT 60.050 36.000 21.43 6.31 37.37 3.34
231 232 4.271533 ACGACACTAATTTTGTGCTTCGAA 59.728 37.500 21.43 0.00 37.37 3.71
232 233 3.805422 ACGACACTAATTTTGTGCTTCGA 59.195 39.130 21.43 0.00 37.37 3.71
233 234 4.128554 ACGACACTAATTTTGTGCTTCG 57.871 40.909 16.43 16.43 38.77 3.79
234 235 5.270853 ACAACGACACTAATTTTGTGCTTC 58.729 37.500 10.31 2.27 38.86 3.86
235 236 5.243426 ACAACGACACTAATTTTGTGCTT 57.757 34.783 10.31 0.00 38.86 3.91
236 237 4.893424 ACAACGACACTAATTTTGTGCT 57.107 36.364 10.31 0.00 38.86 4.40
237 238 7.617533 AATAACAACGACACTAATTTTGTGC 57.382 32.000 10.31 3.91 38.86 4.57
239 240 8.949953 CGAAAATAACAACGACACTAATTTTGT 58.050 29.630 0.00 0.00 31.74 2.83
240 241 8.949953 ACGAAAATAACAACGACACTAATTTTG 58.050 29.630 0.00 0.00 0.00 2.44
242 243 9.801714 CTACGAAAATAACAACGACACTAATTT 57.198 29.630 0.00 0.00 0.00 1.82
243 244 8.981647 ACTACGAAAATAACAACGACACTAATT 58.018 29.630 0.00 0.00 0.00 1.40
244 245 8.524870 ACTACGAAAATAACAACGACACTAAT 57.475 30.769 0.00 0.00 0.00 1.73
245 246 7.928908 ACTACGAAAATAACAACGACACTAA 57.071 32.000 0.00 0.00 0.00 2.24
246 247 8.289618 ACTACTACGAAAATAACAACGACACTA 58.710 33.333 0.00 0.00 0.00 2.74
247 248 7.113965 CACTACTACGAAAATAACAACGACACT 59.886 37.037 0.00 0.00 0.00 3.55
248 249 7.215844 CACTACTACGAAAATAACAACGACAC 58.784 38.462 0.00 0.00 0.00 3.67
252 253 6.451571 CGTCCACTACTACGAAAATAACAACG 60.452 42.308 0.00 0.00 41.55 4.10
254 255 6.446318 ACGTCCACTACTACGAAAATAACAA 58.554 36.000 1.45 0.00 41.55 2.83
259 260 3.436704 TCGACGTCCACTACTACGAAAAT 59.563 43.478 10.58 0.00 41.55 1.82
262 263 1.726791 GTCGACGTCCACTACTACGAA 59.273 52.381 10.58 0.00 41.55 3.85
267 268 2.012673 GTATGGTCGACGTCCACTACT 58.987 52.381 16.03 3.25 37.81 2.57
270 271 1.798735 CGTATGGTCGACGTCCACT 59.201 57.895 16.03 8.29 37.81 4.00
307 308 5.432885 TTTTTCTCCAACTCGGAAATGAC 57.567 39.130 0.00 0.00 45.75 3.06
332 333 0.463295 ATGGCTCATCTTCCGCACTG 60.463 55.000 0.00 0.00 0.00 3.66
337 338 2.149578 GGAATGATGGCTCATCTTCCG 58.850 52.381 18.68 0.00 41.34 4.30
424 447 0.598065 GTTGACTTCGCCATGGCTTT 59.402 50.000 33.07 15.00 39.32 3.51
425 448 0.537143 TGTTGACTTCGCCATGGCTT 60.537 50.000 33.07 15.37 39.32 4.35
475 502 0.469070 AGATCAGATCACAGGCAGGC 59.531 55.000 13.14 0.00 0.00 4.85
483 510 1.850377 CTCACGGCAGATCAGATCAC 58.150 55.000 13.14 4.20 0.00 3.06
484 511 0.103755 GCTCACGGCAGATCAGATCA 59.896 55.000 13.14 0.00 41.35 2.92
533 562 2.235546 GGTCGGTGAGAGCACAAAC 58.764 57.895 0.00 0.00 46.96 2.93
577 606 1.814527 GTCCAGCGAGGTTACCGAT 59.185 57.895 0.00 0.00 39.02 4.18
620 649 4.024143 GCATGTGTTCGCGTGGCA 62.024 61.111 5.77 0.40 0.00 4.92
631 660 4.371417 AGGGCCCCTGTGCATGTG 62.371 66.667 21.43 0.00 29.57 3.21
632 661 4.052518 GAGGGCCCCTGTGCATGT 62.053 66.667 21.43 0.00 31.76 3.21
639 668 3.330720 AAAGGTCGAGGGCCCCTG 61.331 66.667 21.43 12.07 31.76 4.45
640 669 3.009714 GAAAGGTCGAGGGCCCCT 61.010 66.667 21.43 0.00 36.03 4.79
643 672 1.342672 TATGGGAAAGGTCGAGGGCC 61.343 60.000 0.00 0.00 0.00 5.80
644 673 0.765510 ATATGGGAAAGGTCGAGGGC 59.234 55.000 0.00 0.00 0.00 5.19
648 677 2.092646 CCACCAATATGGGAAAGGTCGA 60.093 50.000 2.07 0.00 43.37 4.20
650 679 3.288092 GTCCACCAATATGGGAAAGGTC 58.712 50.000 2.07 0.00 43.37 3.85
651 680 2.652348 TGTCCACCAATATGGGAAAGGT 59.348 45.455 2.07 0.00 43.37 3.50
652 681 3.023832 GTGTCCACCAATATGGGAAAGG 58.976 50.000 2.07 1.96 43.37 3.11
666 695 2.357517 CTGCGGTGAGGTGTCCAC 60.358 66.667 0.00 0.00 0.00 4.02
667 696 3.625897 CCTGCGGTGAGGTGTCCA 61.626 66.667 0.00 0.00 0.00 4.02
668 697 2.579684 GATCCTGCGGTGAGGTGTCC 62.580 65.000 0.00 0.00 34.36 4.02
669 698 1.153549 GATCCTGCGGTGAGGTGTC 60.154 63.158 0.00 0.00 34.36 3.67
670 699 2.660064 GGATCCTGCGGTGAGGTGT 61.660 63.158 3.84 0.00 34.36 4.16
671 700 2.187946 GGATCCTGCGGTGAGGTG 59.812 66.667 3.84 0.00 34.36 4.00
672 701 2.284625 TGGATCCTGCGGTGAGGT 60.285 61.111 14.23 0.00 34.36 3.85
673 702 2.503061 CTGGATCCTGCGGTGAGG 59.497 66.667 14.23 0.00 0.00 3.86
674 703 2.202987 GCTGGATCCTGCGGTGAG 60.203 66.667 25.58 8.17 0.00 3.51
675 704 2.685017 AGCTGGATCCTGCGGTGA 60.685 61.111 30.86 1.81 44.03 4.02
676 705 2.202987 GAGCTGGATCCTGCGGTG 60.203 66.667 30.86 8.94 44.03 4.94
677 706 3.842923 CGAGCTGGATCCTGCGGT 61.843 66.667 30.86 19.06 44.03 5.68
678 707 3.531207 TCGAGCTGGATCCTGCGG 61.531 66.667 30.86 26.52 44.03 5.69
679 708 2.279120 GTCGAGCTGGATCCTGCG 60.279 66.667 30.86 20.86 44.03 5.18
699 728 1.135717 CACACTGCTCTCTGTCTCGAG 60.136 57.143 5.93 5.93 0.00 4.04
702 731 3.510719 GAATCACACTGCTCTCTGTCTC 58.489 50.000 0.00 0.00 0.00 3.36
703 732 2.094803 CGAATCACACTGCTCTCTGTCT 60.095 50.000 0.00 0.00 0.00 3.41
705 734 1.889170 TCGAATCACACTGCTCTCTGT 59.111 47.619 0.00 0.00 0.00 3.41
707 736 2.094286 CCTTCGAATCACACTGCTCTCT 60.094 50.000 0.00 0.00 0.00 3.10
709 738 1.674221 GCCTTCGAATCACACTGCTCT 60.674 52.381 0.00 0.00 0.00 4.09
710 739 0.723981 GCCTTCGAATCACACTGCTC 59.276 55.000 0.00 0.00 0.00 4.26
711 740 0.674895 GGCCTTCGAATCACACTGCT 60.675 55.000 0.00 0.00 0.00 4.24
712 741 0.674895 AGGCCTTCGAATCACACTGC 60.675 55.000 0.00 0.00 0.00 4.40
713 742 1.081892 CAGGCCTTCGAATCACACTG 58.918 55.000 0.00 0.00 0.00 3.66
714 743 0.976641 TCAGGCCTTCGAATCACACT 59.023 50.000 0.00 0.00 0.00 3.55
715 744 1.667724 CATCAGGCCTTCGAATCACAC 59.332 52.381 0.00 0.00 0.00 3.82
716 745 1.278985 ACATCAGGCCTTCGAATCACA 59.721 47.619 0.00 0.00 0.00 3.58
717 746 1.936547 GACATCAGGCCTTCGAATCAC 59.063 52.381 0.00 0.00 0.00 3.06
718 747 1.833630 AGACATCAGGCCTTCGAATCA 59.166 47.619 0.00 0.00 0.00 2.57
719 748 2.159043 TCAGACATCAGGCCTTCGAATC 60.159 50.000 0.00 0.88 0.00 2.52
720 749 1.833630 TCAGACATCAGGCCTTCGAAT 59.166 47.619 0.00 0.00 0.00 3.34
721 750 1.266178 TCAGACATCAGGCCTTCGAA 58.734 50.000 0.00 0.00 0.00 3.71
722 751 1.489481 ATCAGACATCAGGCCTTCGA 58.511 50.000 0.00 0.00 0.00 3.71
723 752 3.459232 TTATCAGACATCAGGCCTTCG 57.541 47.619 0.00 0.00 0.00 3.79
724 753 3.557595 CGTTTATCAGACATCAGGCCTTC 59.442 47.826 0.00 0.00 0.00 3.46
726 755 2.743183 GCGTTTATCAGACATCAGGCCT 60.743 50.000 0.00 0.00 0.00 5.19
728 757 2.279741 TGCGTTTATCAGACATCAGGC 58.720 47.619 0.00 0.00 0.00 4.85
739 768 1.404391 TCCTCCGTCTCTGCGTTTATC 59.596 52.381 0.00 0.00 0.00 1.75
742 771 1.179814 AGTCCTCCGTCTCTGCGTTT 61.180 55.000 0.00 0.00 0.00 3.60
744 773 2.034376 AGTCCTCCGTCTCTGCGT 59.966 61.111 0.00 0.00 0.00 5.24
746 775 0.820871 AATCAGTCCTCCGTCTCTGC 59.179 55.000 0.00 0.00 0.00 4.26
749 778 1.205893 AGCAAATCAGTCCTCCGTCTC 59.794 52.381 0.00 0.00 0.00 3.36
752 781 2.301870 TGTTAGCAAATCAGTCCTCCGT 59.698 45.455 0.00 0.00 0.00 4.69
753 782 2.673368 GTGTTAGCAAATCAGTCCTCCG 59.327 50.000 0.00 0.00 0.00 4.63
754 783 2.673368 CGTGTTAGCAAATCAGTCCTCC 59.327 50.000 0.00 0.00 0.00 4.30
755 784 2.094417 GCGTGTTAGCAAATCAGTCCTC 59.906 50.000 0.00 0.00 37.05 3.71
767 796 0.108804 TCCTGCTAGTGCGTGTTAGC 60.109 55.000 7.09 7.09 43.34 3.09
768 797 1.914634 CTCCTGCTAGTGCGTGTTAG 58.085 55.000 0.00 0.00 43.34 2.34
769 798 0.108804 GCTCCTGCTAGTGCGTGTTA 60.109 55.000 0.00 0.00 43.34 2.41
770 799 1.374758 GCTCCTGCTAGTGCGTGTT 60.375 57.895 0.00 0.00 43.34 3.32
927 1020 3.691342 CGTCGTGGGGAGGCAGAA 61.691 66.667 0.00 0.00 0.00 3.02
1057 1163 1.194781 GGAAGGAGGAGGTGAGCACA 61.195 60.000 2.75 0.00 0.00 4.57
1074 1180 0.253207 GGGGAAAGGGAGGAAGAGGA 60.253 60.000 0.00 0.00 0.00 3.71
1144 1440 0.822164 CTACTTGGGTTCGATCCGGT 59.178 55.000 0.00 7.75 0.00 5.28
1155 1451 1.009829 CTAAAGCAGCGCTACTTGGG 58.990 55.000 23.17 14.55 38.25 4.12
1211 1507 2.507992 CTGCAAGGACCTCTCGCG 60.508 66.667 0.00 0.00 0.00 5.87
1241 1544 2.202730 GCAGAGCAGAGGAGCGAC 60.203 66.667 0.00 0.00 40.15 5.19
1247 1550 1.142314 GAGCAGAGCAGAGCAGAGG 59.858 63.158 0.00 0.00 0.00 3.69
1265 1568 2.365370 AGCCCTGGAGCAGAGGAG 60.365 66.667 9.36 0.00 32.44 3.69
1266 1569 2.686470 CAGCCCTGGAGCAGAGGA 60.686 66.667 9.36 0.00 32.44 3.71
1267 1570 2.686470 TCAGCCCTGGAGCAGAGG 60.686 66.667 9.36 0.00 32.44 3.69
1268 1571 1.263342 TTCTCAGCCCTGGAGCAGAG 61.263 60.000 17.47 17.47 45.07 3.35
1269 1572 1.229304 TTCTCAGCCCTGGAGCAGA 60.229 57.895 9.36 6.13 32.44 4.26
1270 1573 1.221293 CTTCTCAGCCCTGGAGCAG 59.779 63.158 9.36 2.35 34.23 4.24
1283 1586 0.179248 GCAGTAAACGCGTGCTTCTC 60.179 55.000 14.98 1.60 34.23 2.87
1311 1614 4.212214 CCTGAACTCCTGAAGAAAAAGACG 59.788 45.833 0.00 0.00 0.00 4.18
1348 1651 1.950954 GCAGAAACCTTACCCTGCCTC 60.951 57.143 0.00 0.00 44.39 4.70
1415 1720 3.567797 GACGGAGCATCAAGGCGC 61.568 66.667 0.00 0.00 39.27 6.53
1460 1768 1.808945 CACAGGAAACACAGAGCATCC 59.191 52.381 0.00 0.00 33.66 3.51
1481 1809 2.822561 TGCTCCACACTGTGAAAAACAA 59.177 40.909 15.86 0.00 38.67 2.83
1489 1817 1.667236 TGTTTCTGCTCCACACTGTG 58.333 50.000 6.19 6.19 0.00 3.66
1512 1840 6.821665 TCACTTGTACTAACAAACTTGAAGCT 59.178 34.615 0.00 0.00 44.79 3.74
1580 1920 0.900647 TTAAACAACCATGGCCCCGG 60.901 55.000 13.04 2.37 0.00 5.73
1581 1921 1.134848 CATTAAACAACCATGGCCCCG 60.135 52.381 13.04 0.00 0.00 5.73
1582 1922 1.406751 GCATTAAACAACCATGGCCCC 60.407 52.381 13.04 0.00 0.00 5.80
1584 1924 2.758736 TGCATTAAACAACCATGGCC 57.241 45.000 13.04 0.00 0.00 5.36
1661 2001 9.927668 AAATTTACAGCAAGCAAACATAGTAAT 57.072 25.926 0.00 0.00 0.00 1.89
1705 2045 2.899303 TCCCTTCCAACCTTTGATCC 57.101 50.000 0.00 0.00 0.00 3.36
1706 2046 3.092301 CCTTCCCTTCCAACCTTTGATC 58.908 50.000 0.00 0.00 0.00 2.92
1708 2048 1.856920 ACCTTCCCTTCCAACCTTTGA 59.143 47.619 0.00 0.00 0.00 2.69
1723 2064 1.873863 GGTAACCAGCGCAACCTTC 59.126 57.895 11.47 0.00 0.00 3.46
1900 2241 0.249489 CCCGGCTTATGTCTTCCTCG 60.249 60.000 0.00 0.00 0.00 4.63
1933 2274 1.600916 GGTGCCAAACTTCTCGGCT 60.601 57.895 0.00 0.00 46.39 5.52
2314 3191 1.980765 TCTCTCACTGCATCACCCTTT 59.019 47.619 0.00 0.00 0.00 3.11
2332 3209 1.479389 CCAACAAAGGCCAGGAAGTCT 60.479 52.381 5.01 0.00 0.00 3.24
2632 3518 9.250624 CACTGTCCTTAAGCACTAATATAGAAC 57.749 37.037 0.00 0.00 0.00 3.01
2778 3667 6.915843 GCTTCCAACTCAAATTTTCGAAGTTA 59.084 34.615 0.00 0.00 0.00 2.24
2780 3669 5.281727 GCTTCCAACTCAAATTTTCGAAGT 58.718 37.500 0.00 0.00 0.00 3.01
2785 3674 4.202253 ACAGGGCTTCCAACTCAAATTTTC 60.202 41.667 0.00 0.00 0.00 2.29
2932 3830 2.021457 GTGTTTGTTGTACCACAGGCT 58.979 47.619 0.00 0.00 0.00 4.58
3007 3906 5.934043 TCTGTTGTGTGAAGTAGATGATTGG 59.066 40.000 0.00 0.00 0.00 3.16
3014 3913 6.101997 CAGCATATCTGTTGTGTGAAGTAGA 58.898 40.000 0.00 0.00 38.02 2.59
3015 3914 5.220548 GCAGCATATCTGTTGTGTGAAGTAG 60.221 44.000 0.00 0.00 44.66 2.57
3016 3915 4.631377 GCAGCATATCTGTTGTGTGAAGTA 59.369 41.667 0.00 0.00 44.66 2.24
3017 3916 3.438087 GCAGCATATCTGTTGTGTGAAGT 59.562 43.478 0.00 0.00 44.66 3.01
3018 3917 3.688185 AGCAGCATATCTGTTGTGTGAAG 59.312 43.478 0.00 0.00 44.66 3.02
3020 3919 3.004862 CAGCAGCATATCTGTTGTGTGA 58.995 45.455 0.00 0.00 45.45 3.58
3077 3980 5.757808 TGCAGCAACAATGATGTACGTATAT 59.242 36.000 4.30 4.30 44.75 0.86
3094 4051 2.961741 TCTTAATGGTTTGGTGCAGCAA 59.038 40.909 26.54 26.54 0.00 3.91
3216 4224 6.370994 ACAGCTCTGAAGATAACAAAGATGTG 59.629 38.462 3.60 0.00 40.46 3.21
3299 4307 1.737201 GCCGAGAGCTCCTTACCTC 59.263 63.158 10.93 0.00 38.99 3.85
3429 5774 4.421948 ACAGTACTAGCAACGTAAGCATC 58.578 43.478 14.34 1.74 45.62 3.91
3436 5781 2.519377 TGCAACAGTACTAGCAACGT 57.481 45.000 12.70 0.00 33.48 3.99
3446 5791 4.702831 TGAAACAGAGTCATGCAACAGTA 58.297 39.130 0.00 0.00 0.00 2.74
3447 5792 3.544684 TGAAACAGAGTCATGCAACAGT 58.455 40.909 0.00 0.00 0.00 3.55
3448 5793 3.811497 TCTGAAACAGAGTCATGCAACAG 59.189 43.478 0.00 0.00 35.39 3.16
3492 5837 0.100861 GAGCTACTACACCAGACGGC 59.899 60.000 0.00 0.00 34.57 5.68


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.