Multiple sequence alignment - TraesCS5D01G476600

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G476600 chr5D 100.000 3520 0 0 1 3520 515467239 515463720 0.000000e+00 6501.0
1 TraesCS5D01G476600 chr5D 92.081 1970 118 15 1586 3520 551243521 551241555 0.000000e+00 2739.0
2 TraesCS5D01G476600 chr5D 92.965 924 65 0 1586 2509 515568292 515567369 0.000000e+00 1347.0
3 TraesCS5D01G476600 chr5D 84.538 1190 156 19 1030 2200 515424957 515423777 0.000000e+00 1153.0
4 TraesCS5D01G476600 chr5D 89.091 605 50 9 960 1553 515568894 515568295 0.000000e+00 737.0
5 TraesCS5D01G476600 chr5D 88.595 605 54 8 960 1553 551244124 551243524 0.000000e+00 721.0
6 TraesCS5D01G476600 chr5D 91.121 214 19 0 4 217 515539647 515539434 1.240000e-74 291.0
7 TraesCS5D01G476600 chr5D 88.479 217 25 0 1 217 61778248 61778464 2.690000e-66 263.0
8 TraesCS5D01G476600 chr5D 87.444 223 27 1 1 223 443242751 443242972 4.510000e-64 255.0
9 TraesCS5D01G476600 chr5D 84.472 161 19 4 217 372 217647504 217647345 1.690000e-33 154.0
10 TraesCS5D01G476600 chr5D 75.889 253 49 9 1510 1759 515338597 515338354 6.170000e-23 119.0
11 TraesCS5D01G476600 chr5D 93.750 64 4 0 820 883 551244221 551244158 2.890000e-16 97.1
12 TraesCS5D01G476600 chr5D 72.785 316 61 16 3092 3404 560065181 560065474 2.250000e-12 84.2
13 TraesCS5D01G476600 chr5A 88.805 2519 216 30 1046 3520 643735021 643732525 0.000000e+00 3029.0
14 TraesCS5D01G476600 chr5A 88.229 1750 160 26 913 2633 643855614 643853882 0.000000e+00 2049.0
15 TraesCS5D01G476600 chr5A 80.739 1002 159 25 1510 2494 643578077 643577093 0.000000e+00 750.0
16 TraesCS5D01G476600 chr5A 83.156 564 71 18 1027 1576 643453849 643453296 8.780000e-136 494.0
17 TraesCS5D01G476600 chr5B 88.252 1728 151 19 784 2472 648260788 648259074 0.000000e+00 2019.0
18 TraesCS5D01G476600 chr5B 85.578 1470 186 19 1027 2476 648180847 648179384 0.000000e+00 1517.0
19 TraesCS5D01G476600 chr5B 82.530 996 147 22 1510 2494 648135550 648134571 0.000000e+00 850.0
20 TraesCS5D01G476600 chr5B 81.206 995 162 20 1510 2494 648122860 648123839 0.000000e+00 778.0
21 TraesCS5D01G476600 chr5B 81.225 996 159 21 1510 2494 648130748 648129770 0.000000e+00 778.0
22 TraesCS5D01G476600 chr5B 85.903 454 51 7 980 1425 648135994 648135546 4.110000e-129 472.0
23 TraesCS5D01G476600 chr5B 93.011 186 10 3 2893 3075 648258833 648258648 5.790000e-68 268.0
24 TraesCS5D01G476600 chr5B 88.318 214 24 1 5 217 415482288 415482075 4.510000e-64 255.0
25 TraesCS5D01G476600 chr5B 95.413 109 5 0 406 514 648301033 648300925 1.300000e-39 174.0
26 TraesCS5D01G476600 chr5B 98.592 71 1 0 444 514 648261197 648261127 3.690000e-25 126.0
27 TraesCS5D01G476600 chr5B 93.333 60 3 1 2827 2886 648258930 648258872 1.740000e-13 87.9
28 TraesCS5D01G476600 chr5B 90.741 54 3 1 2668 2719 21186082 21186029 1.750000e-08 71.3
29 TraesCS5D01G476600 chr7D 89.862 217 22 0 1 217 68635142 68635358 2.680000e-71 279.0
30 TraesCS5D01G476600 chr7D 89.671 213 20 2 1 212 68711237 68711448 1.610000e-68 270.0
31 TraesCS5D01G476600 chr7D 100.000 29 0 0 2666 2694 125907759 125907731 2.000000e-03 54.7
32 TraesCS5D01G476600 chr7D 100.000 28 0 0 2667 2694 406339018 406338991 6.000000e-03 52.8
33 TraesCS5D01G476600 chr3D 88.318 214 25 0 4 217 463779160 463778947 1.250000e-64 257.0
34 TraesCS5D01G476600 chr3D 87.615 218 27 0 1 218 175583254 175583471 1.620000e-63 254.0
35 TraesCS5D01G476600 chr3D 85.417 144 17 4 217 356 17876935 17876792 2.830000e-31 147.0
36 TraesCS5D01G476600 chr6D 87.558 217 27 0 1 217 379782653 379782869 5.830000e-63 252.0
37 TraesCS5D01G476600 chr6D 83.851 161 20 4 217 372 436246974 436246815 7.870000e-32 148.0
38 TraesCS5D01G476600 chr6D 80.952 84 13 3 2726 2806 443850767 443850850 2.930000e-06 63.9
39 TraesCS5D01G476600 chr4A 88.083 193 17 5 217 404 296328547 296328738 1.270000e-54 224.0
40 TraesCS5D01G476600 chr7B 85.641 195 25 3 217 408 106125168 106124974 5.960000e-48 202.0
41 TraesCS5D01G476600 chr1D 84.456 193 23 6 217 403 343352968 343353159 2.160000e-42 183.0
42 TraesCS5D01G476600 chr1D 100.000 28 0 0 2668 2695 332931454 332931481 6.000000e-03 52.8
43 TraesCS5D01G476600 chr4D 74.365 394 95 4 3106 3497 441056411 441056022 2.810000e-36 163.0
44 TraesCS5D01G476600 chr6B 82.609 184 26 6 222 402 684463878 684463698 1.310000e-34 158.0
45 TraesCS5D01G476600 chr3A 81.250 192 30 6 217 403 729395566 729395756 2.190000e-32 150.0
46 TraesCS5D01G476600 chr1A 80.311 193 30 7 217 403 373243616 373243426 4.740000e-29 139.0
47 TraesCS5D01G476600 chr7A 82.114 123 18 4 2694 2813 690204300 690204421 6.220000e-18 102.0
48 TraesCS5D01G476600 chr7A 100.000 29 0 0 2668 2696 624939437 624939409 2.000000e-03 54.7
49 TraesCS5D01G476600 chrUn 100.000 28 0 0 2667 2694 126990224 126990251 6.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G476600 chr5D 515463720 515467239 3519 True 6501.000 6501 100.000000 1 3520 1 chr5D.!!$R4 3519
1 TraesCS5D01G476600 chr5D 551241555 551244221 2666 True 1185.700 2739 91.475333 820 3520 3 chr5D.!!$R7 2700
2 TraesCS5D01G476600 chr5D 515423777 515424957 1180 True 1153.000 1153 84.538000 1030 2200 1 chr5D.!!$R3 1170
3 TraesCS5D01G476600 chr5D 515567369 515568894 1525 True 1042.000 1347 91.028000 960 2509 2 chr5D.!!$R6 1549
4 TraesCS5D01G476600 chr5A 643732525 643735021 2496 True 3029.000 3029 88.805000 1046 3520 1 chr5A.!!$R3 2474
5 TraesCS5D01G476600 chr5A 643853882 643855614 1732 True 2049.000 2049 88.229000 913 2633 1 chr5A.!!$R4 1720
6 TraesCS5D01G476600 chr5A 643577093 643578077 984 True 750.000 750 80.739000 1510 2494 1 chr5A.!!$R2 984
7 TraesCS5D01G476600 chr5A 643453296 643453849 553 True 494.000 494 83.156000 1027 1576 1 chr5A.!!$R1 549
8 TraesCS5D01G476600 chr5B 648179384 648180847 1463 True 1517.000 1517 85.578000 1027 2476 1 chr5B.!!$R3 1449
9 TraesCS5D01G476600 chr5B 648122860 648123839 979 False 778.000 778 81.206000 1510 2494 1 chr5B.!!$F1 984
10 TraesCS5D01G476600 chr5B 648129770 648135994 6224 True 700.000 850 83.219333 980 2494 3 chr5B.!!$R5 1514
11 TraesCS5D01G476600 chr5B 648258648 648261197 2549 True 625.225 2019 93.297000 444 3075 4 chr5B.!!$R6 2631

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
188 189 0.035725 GAAAAGGATCCGGGTTCCGT 60.036 55.0 16.57 11.86 46.80 4.69 F
273 274 0.100503 GTGTGTGTGGTCTTGTTGGC 59.899 55.0 0.00 0.00 0.00 4.52 F
314 315 0.104487 TTGAGGGCGTGTTGTAACGA 59.896 50.0 0.17 0.00 46.49 3.85 F
395 396 0.108520 GTCTATGGGACCGCGTTTCA 60.109 55.0 4.92 0.00 38.93 2.69 F
2279 2459 0.037232 CGAAGAAGGTGGGGTGTCTC 60.037 60.0 0.00 0.00 0.00 3.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1844 2013 0.457443 TCGCGTGCTCTGATGATTCT 59.543 50.000 5.77 0.00 0.00 2.40 R
1982 2151 1.605058 GAGCCCAGAGGAAGCGTGTA 61.605 60.000 0.00 0.00 33.47 2.90 R
2144 2324 2.425592 CAGTGCGTCAGGAACCCA 59.574 61.111 0.00 0.00 0.00 4.51 R
2384 2564 2.124983 TCCTGCATCTTCGCTGCC 60.125 61.111 0.00 0.00 38.89 4.85 R
3339 6706 3.100671 AGCTCCGGAGTGAAAACTCTAT 58.899 45.455 31.43 2.09 36.97 1.98 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.706636 TGCAGAAGTCTTGGTGTGC 58.293 52.632 0.00 0.00 0.00 4.57
19 20 0.819259 TGCAGAAGTCTTGGTGTGCC 60.819 55.000 0.00 0.00 0.00 5.01
20 21 1.845809 GCAGAAGTCTTGGTGTGCCG 61.846 60.000 0.00 0.00 37.67 5.69
21 22 1.071471 AGAAGTCTTGGTGTGCCGG 59.929 57.895 0.00 0.00 37.67 6.13
22 23 1.966451 GAAGTCTTGGTGTGCCGGG 60.966 63.158 2.18 0.00 37.67 5.73
23 24 2.676163 GAAGTCTTGGTGTGCCGGGT 62.676 60.000 2.18 0.00 37.67 5.28
24 25 2.203294 GTCTTGGTGTGCCGGGTT 60.203 61.111 2.18 0.00 37.67 4.11
25 26 1.826487 GTCTTGGTGTGCCGGGTTT 60.826 57.895 2.18 0.00 37.67 3.27
26 27 1.826054 TCTTGGTGTGCCGGGTTTG 60.826 57.895 2.18 0.00 37.67 2.93
27 28 2.835431 TTGGTGTGCCGGGTTTGG 60.835 61.111 2.18 0.00 37.67 3.28
28 29 3.663815 TTGGTGTGCCGGGTTTGGT 62.664 57.895 2.18 0.00 37.67 3.67
29 30 3.292159 GGTGTGCCGGGTTTGGTC 61.292 66.667 2.18 0.00 0.00 4.02
30 31 3.656045 GTGTGCCGGGTTTGGTCG 61.656 66.667 2.18 0.00 0.00 4.79
31 32 4.178169 TGTGCCGGGTTTGGTCGT 62.178 61.111 2.18 0.00 0.00 4.34
32 33 3.351416 GTGCCGGGTTTGGTCGTC 61.351 66.667 2.18 0.00 0.00 4.20
33 34 3.552384 TGCCGGGTTTGGTCGTCT 61.552 61.111 2.18 0.00 0.00 4.18
34 35 2.281276 GCCGGGTTTGGTCGTCTT 60.281 61.111 2.18 0.00 0.00 3.01
35 36 2.613506 GCCGGGTTTGGTCGTCTTG 61.614 63.158 2.18 0.00 0.00 3.02
36 37 1.070105 CCGGGTTTGGTCGTCTTGA 59.930 57.895 0.00 0.00 0.00 3.02
37 38 0.949105 CCGGGTTTGGTCGTCTTGAG 60.949 60.000 0.00 0.00 0.00 3.02
38 39 1.566018 CGGGTTTGGTCGTCTTGAGC 61.566 60.000 0.00 0.00 45.46 4.26
39 40 1.235281 GGGTTTGGTCGTCTTGAGCC 61.235 60.000 0.00 0.00 44.62 4.70
40 41 1.566018 GGTTTGGTCGTCTTGAGCCG 61.566 60.000 0.00 0.00 44.62 5.52
41 42 1.301401 TTTGGTCGTCTTGAGCCGG 60.301 57.895 0.00 0.00 44.62 6.13
42 43 3.876589 TTGGTCGTCTTGAGCCGGC 62.877 63.158 21.89 21.89 44.62 6.13
47 48 3.423154 GTCTTGAGCCGGCCGTTG 61.423 66.667 26.15 11.15 0.00 4.10
48 49 4.697756 TCTTGAGCCGGCCGTTGG 62.698 66.667 26.15 10.30 0.00 3.77
59 60 4.278513 CCGTTGGGGCCAGGTTGA 62.279 66.667 4.39 0.00 0.00 3.18
60 61 2.672996 CGTTGGGGCCAGGTTGAG 60.673 66.667 4.39 0.00 0.00 3.02
61 62 2.283173 GTTGGGGCCAGGTTGAGG 60.283 66.667 4.39 0.00 0.00 3.86
62 63 2.451493 TTGGGGCCAGGTTGAGGA 60.451 61.111 4.39 0.00 0.00 3.71
63 64 2.538141 TTGGGGCCAGGTTGAGGAG 61.538 63.158 4.39 0.00 0.00 3.69
64 65 2.936032 GGGGCCAGGTTGAGGAGT 60.936 66.667 4.39 0.00 0.00 3.85
65 66 2.671682 GGGCCAGGTTGAGGAGTC 59.328 66.667 4.39 0.00 0.00 3.36
66 67 2.671682 GGCCAGGTTGAGGAGTCC 59.328 66.667 0.00 0.00 0.00 3.85
67 68 2.266055 GCCAGGTTGAGGAGTCCG 59.734 66.667 2.76 0.00 0.00 4.79
68 69 2.584391 GCCAGGTTGAGGAGTCCGT 61.584 63.158 2.76 0.00 0.00 4.69
69 70 1.592223 CCAGGTTGAGGAGTCCGTC 59.408 63.158 2.76 2.67 0.00 4.79
77 78 4.078516 GGAGTCCGTCCGGGTTGG 62.079 72.222 0.00 0.58 34.84 3.77
86 87 1.758592 TCCGGGTTGGAGAGTTTGG 59.241 57.895 0.00 0.00 43.74 3.28
87 88 1.971695 CCGGGTTGGAGAGTTTGGC 60.972 63.158 0.00 0.00 42.00 4.52
88 89 1.971695 CGGGTTGGAGAGTTTGGCC 60.972 63.158 0.00 0.00 0.00 5.36
89 90 1.971695 GGGTTGGAGAGTTTGGCCG 60.972 63.158 0.00 0.00 0.00 6.13
90 91 2.626780 GGTTGGAGAGTTTGGCCGC 61.627 63.158 0.00 0.00 0.00 6.53
91 92 2.668212 TTGGAGAGTTTGGCCGCG 60.668 61.111 0.00 0.00 0.00 6.46
92 93 3.469863 TTGGAGAGTTTGGCCGCGT 62.470 57.895 4.92 0.00 0.00 6.01
93 94 3.119096 GGAGAGTTTGGCCGCGTC 61.119 66.667 4.92 0.00 0.00 5.19
94 95 3.479269 GAGAGTTTGGCCGCGTCG 61.479 66.667 4.92 0.00 0.00 5.12
95 96 3.909258 GAGAGTTTGGCCGCGTCGA 62.909 63.158 4.92 0.00 0.00 4.20
96 97 3.479269 GAGTTTGGCCGCGTCGAG 61.479 66.667 4.92 0.00 0.00 4.04
115 116 3.521796 GGCTTGGCCGGATTGAGC 61.522 66.667 5.05 8.41 39.62 4.26
116 117 2.751436 GCTTGGCCGGATTGAGCA 60.751 61.111 5.05 0.00 33.68 4.26
117 118 2.342650 GCTTGGCCGGATTGAGCAA 61.343 57.895 5.05 0.00 33.68 3.91
118 119 1.508088 CTTGGCCGGATTGAGCAAC 59.492 57.895 5.05 0.00 0.00 4.17
119 120 1.937546 CTTGGCCGGATTGAGCAACC 61.938 60.000 5.05 0.00 0.00 3.77
120 121 3.140814 GGCCGGATTGAGCAACCC 61.141 66.667 5.05 0.00 0.00 4.11
121 122 3.508840 GCCGGATTGAGCAACCCG 61.509 66.667 5.05 9.05 41.47 5.28
123 124 3.508840 CGGATTGAGCAACCCGGC 61.509 66.667 8.15 0.00 38.42 6.13
124 125 3.140814 GGATTGAGCAACCCGGCC 61.141 66.667 0.00 0.00 0.00 6.13
125 126 2.361104 GATTGAGCAACCCGGCCA 60.361 61.111 2.24 0.00 0.00 5.36
126 127 2.361610 ATTGAGCAACCCGGCCAG 60.362 61.111 2.24 0.00 0.00 4.85
127 128 3.944250 ATTGAGCAACCCGGCCAGG 62.944 63.158 2.45 2.45 40.63 4.45
132 133 4.738998 CAACCCGGCCAGGCATGA 62.739 66.667 15.19 0.00 39.21 3.07
133 134 4.431131 AACCCGGCCAGGCATGAG 62.431 66.667 15.19 0.67 39.21 2.90
144 145 3.510846 GCATGAGCCAGCTTGAGG 58.489 61.111 0.00 0.00 33.58 3.86
145 146 1.077930 GCATGAGCCAGCTTGAGGA 60.078 57.895 0.00 0.00 33.58 3.71
146 147 1.096386 GCATGAGCCAGCTTGAGGAG 61.096 60.000 0.00 0.00 33.58 3.69
154 155 3.123620 GCTTGAGGAGCGGTGCTG 61.124 66.667 15.12 0.00 42.46 4.41
155 156 2.435586 CTTGAGGAGCGGTGCTGG 60.436 66.667 15.12 0.00 39.88 4.85
156 157 3.241530 TTGAGGAGCGGTGCTGGT 61.242 61.111 15.12 0.00 39.88 4.00
157 158 3.240134 TTGAGGAGCGGTGCTGGTC 62.240 63.158 15.12 0.00 39.88 4.02
164 165 4.619227 CGGTGCTGGTCCCGTTGT 62.619 66.667 0.00 0.00 39.38 3.32
165 166 2.203294 GGTGCTGGTCCCGTTGTT 60.203 61.111 0.00 0.00 0.00 2.83
166 167 1.826487 GGTGCTGGTCCCGTTGTTT 60.826 57.895 0.00 0.00 0.00 2.83
167 168 1.388837 GGTGCTGGTCCCGTTGTTTT 61.389 55.000 0.00 0.00 0.00 2.43
168 169 0.458260 GTGCTGGTCCCGTTGTTTTT 59.542 50.000 0.00 0.00 0.00 1.94
169 170 0.457851 TGCTGGTCCCGTTGTTTTTG 59.542 50.000 0.00 0.00 0.00 2.44
170 171 0.741915 GCTGGTCCCGTTGTTTTTGA 59.258 50.000 0.00 0.00 0.00 2.69
171 172 1.135333 GCTGGTCCCGTTGTTTTTGAA 59.865 47.619 0.00 0.00 0.00 2.69
172 173 2.417515 GCTGGTCCCGTTGTTTTTGAAA 60.418 45.455 0.00 0.00 0.00 2.69
173 174 3.851098 CTGGTCCCGTTGTTTTTGAAAA 58.149 40.909 0.00 0.00 0.00 2.29
174 175 3.851098 TGGTCCCGTTGTTTTTGAAAAG 58.149 40.909 0.00 0.00 0.00 2.27
175 176 3.191669 GGTCCCGTTGTTTTTGAAAAGG 58.808 45.455 0.00 0.00 0.00 3.11
176 177 3.119065 GGTCCCGTTGTTTTTGAAAAGGA 60.119 43.478 0.00 0.00 0.00 3.36
177 178 4.442332 GGTCCCGTTGTTTTTGAAAAGGAT 60.442 41.667 0.00 0.00 0.00 3.24
178 179 4.743151 GTCCCGTTGTTTTTGAAAAGGATC 59.257 41.667 0.00 0.00 0.00 3.36
179 180 4.055360 CCCGTTGTTTTTGAAAAGGATCC 58.945 43.478 2.48 2.48 0.00 3.36
180 181 3.733727 CCGTTGTTTTTGAAAAGGATCCG 59.266 43.478 5.98 0.00 0.00 4.18
181 182 3.733727 CGTTGTTTTTGAAAAGGATCCGG 59.266 43.478 5.98 0.00 0.00 5.14
182 183 4.055360 GTTGTTTTTGAAAAGGATCCGGG 58.945 43.478 5.98 0.00 0.00 5.73
183 184 3.301274 TGTTTTTGAAAAGGATCCGGGT 58.699 40.909 5.98 0.00 0.00 5.28
184 185 3.707102 TGTTTTTGAAAAGGATCCGGGTT 59.293 39.130 5.98 1.40 0.00 4.11
185 186 4.202172 TGTTTTTGAAAAGGATCCGGGTTC 60.202 41.667 5.98 11.54 0.00 3.62
186 187 2.209690 TTGAAAAGGATCCGGGTTCC 57.790 50.000 15.13 15.13 0.00 3.62
188 189 0.035725 GAAAAGGATCCGGGTTCCGT 60.036 55.000 16.57 11.86 46.80 4.69
189 190 0.402887 AAAAGGATCCGGGTTCCGTT 59.597 50.000 16.58 16.58 46.80 4.44
190 191 0.322187 AAAGGATCCGGGTTCCGTTG 60.322 55.000 20.14 0.00 46.80 4.10
191 192 2.814913 AAGGATCCGGGTTCCGTTGC 62.815 60.000 16.57 0.00 46.80 4.17
192 193 2.822701 GATCCGGGTTCCGTTGCC 60.823 66.667 0.00 0.00 46.80 4.52
193 194 3.325201 GATCCGGGTTCCGTTGCCT 62.325 63.158 0.00 0.00 46.80 4.75
194 195 3.622060 ATCCGGGTTCCGTTGCCTG 62.622 63.158 0.00 0.00 46.80 4.85
195 196 4.636435 CCGGGTTCCGTTGCCTGT 62.636 66.667 5.60 0.00 46.80 4.00
196 197 2.593436 CGGGTTCCGTTGCCTGTT 60.593 61.111 0.00 0.00 42.73 3.16
197 198 2.613506 CGGGTTCCGTTGCCTGTTC 61.614 63.158 0.00 0.00 42.73 3.18
198 199 2.613506 GGGTTCCGTTGCCTGTTCG 61.614 63.158 0.00 0.00 0.00 3.95
199 200 2.613506 GGTTCCGTTGCCTGTTCGG 61.614 63.158 0.00 0.00 44.76 4.30
200 201 2.281208 TTCCGTTGCCTGTTCGGG 60.281 61.111 0.00 0.00 43.75 5.14
201 202 3.835790 TTCCGTTGCCTGTTCGGGG 62.836 63.158 0.00 0.00 43.75 5.73
202 203 4.636435 CCGTTGCCTGTTCGGGGT 62.636 66.667 0.00 0.00 40.49 4.95
203 204 2.593436 CGTTGCCTGTTCGGGGTT 60.593 61.111 0.00 0.00 0.00 4.11
204 205 2.613506 CGTTGCCTGTTCGGGGTTC 61.614 63.158 0.00 0.00 0.00 3.62
205 206 1.527380 GTTGCCTGTTCGGGGTTCA 60.527 57.895 0.00 0.00 0.00 3.18
206 207 0.893727 GTTGCCTGTTCGGGGTTCAT 60.894 55.000 0.00 0.00 0.00 2.57
207 208 0.608035 TTGCCTGTTCGGGGTTCATC 60.608 55.000 0.00 0.00 0.00 2.92
208 209 1.749258 GCCTGTTCGGGGTTCATCC 60.749 63.158 0.00 0.00 0.00 3.51
225 226 3.199551 CCCCCGACACAATGCATG 58.800 61.111 0.00 0.00 0.00 4.06
226 227 2.491152 CCCCGACACAATGCATGC 59.509 61.111 11.82 11.82 0.00 4.06
227 228 2.341875 CCCCGACACAATGCATGCA 61.342 57.895 25.04 25.04 0.00 3.96
228 229 1.138036 CCCGACACAATGCATGCAG 59.862 57.895 26.69 15.79 0.00 4.41
229 230 1.515519 CCGACACAATGCATGCAGC 60.516 57.895 26.69 9.54 45.96 5.25
230 231 1.515519 CGACACAATGCATGCAGCC 60.516 57.895 26.69 3.59 44.83 4.85
231 232 1.888018 GACACAATGCATGCAGCCT 59.112 52.632 26.69 10.19 44.83 4.58
232 233 0.179145 GACACAATGCATGCAGCCTC 60.179 55.000 26.69 11.54 44.83 4.70
233 234 1.226575 CACAATGCATGCAGCCTCG 60.227 57.895 26.69 13.82 44.83 4.63
234 235 1.377594 ACAATGCATGCAGCCTCGA 60.378 52.632 26.69 0.00 44.83 4.04
235 236 1.063649 CAATGCATGCAGCCTCGAC 59.936 57.895 26.69 0.00 44.83 4.20
236 237 2.466982 AATGCATGCAGCCTCGACG 61.467 57.895 26.69 0.00 44.83 5.12
239 240 3.190849 CATGCAGCCTCGACGGTG 61.191 66.667 8.94 8.94 34.25 4.94
240 241 3.695606 ATGCAGCCTCGACGGTGT 61.696 61.111 13.75 0.00 34.25 4.16
241 242 3.240134 ATGCAGCCTCGACGGTGTT 62.240 57.895 13.75 1.63 34.25 3.32
242 243 3.112709 GCAGCCTCGACGGTGTTC 61.113 66.667 13.75 0.00 34.25 3.18
243 244 2.651361 CAGCCTCGACGGTGTTCT 59.349 61.111 5.57 0.00 34.25 3.01
244 245 1.444553 CAGCCTCGACGGTGTTCTC 60.445 63.158 5.57 0.00 34.25 2.87
245 246 1.604023 AGCCTCGACGGTGTTCTCT 60.604 57.895 0.00 0.00 34.25 3.10
246 247 1.179814 AGCCTCGACGGTGTTCTCTT 61.180 55.000 0.00 0.00 34.25 2.85
247 248 0.733223 GCCTCGACGGTGTTCTCTTC 60.733 60.000 0.00 0.00 34.25 2.87
248 249 0.882474 CCTCGACGGTGTTCTCTTCT 59.118 55.000 0.00 0.00 0.00 2.85
249 250 1.135632 CCTCGACGGTGTTCTCTTCTC 60.136 57.143 0.00 0.00 0.00 2.87
250 251 0.516001 TCGACGGTGTTCTCTTCTCG 59.484 55.000 0.00 0.00 0.00 4.04
251 252 0.454620 CGACGGTGTTCTCTTCTCGG 60.455 60.000 0.00 0.00 0.00 4.63
252 253 0.733223 GACGGTGTTCTCTTCTCGGC 60.733 60.000 0.00 0.00 0.00 5.54
253 254 1.801913 CGGTGTTCTCTTCTCGGCG 60.802 63.158 0.00 0.00 0.00 6.46
254 255 1.446272 GGTGTTCTCTTCTCGGCGG 60.446 63.158 7.21 0.00 0.00 6.13
255 256 1.289380 GTGTTCTCTTCTCGGCGGT 59.711 57.895 7.21 0.00 0.00 5.68
256 257 1.009389 GTGTTCTCTTCTCGGCGGTG 61.009 60.000 7.21 0.00 0.00 4.94
257 258 1.289380 GTTCTCTTCTCGGCGGTGT 59.711 57.895 7.21 0.00 0.00 4.16
258 259 1.009389 GTTCTCTTCTCGGCGGTGTG 61.009 60.000 7.21 0.00 0.00 3.82
259 260 1.461091 TTCTCTTCTCGGCGGTGTGT 61.461 55.000 7.21 0.00 0.00 3.72
260 261 1.734477 CTCTTCTCGGCGGTGTGTG 60.734 63.158 7.21 0.00 0.00 3.82
261 262 2.029073 CTTCTCGGCGGTGTGTGT 59.971 61.111 7.21 0.00 0.00 3.72
262 263 2.279851 TTCTCGGCGGTGTGTGTG 60.280 61.111 7.21 0.00 0.00 3.82
263 264 3.800685 TTCTCGGCGGTGTGTGTGG 62.801 63.158 7.21 0.00 0.00 4.17
264 265 4.602259 CTCGGCGGTGTGTGTGGT 62.602 66.667 7.21 0.00 0.00 4.16
265 266 4.595538 TCGGCGGTGTGTGTGGTC 62.596 66.667 7.21 0.00 0.00 4.02
266 267 4.602259 CGGCGGTGTGTGTGGTCT 62.602 66.667 0.00 0.00 0.00 3.85
267 268 2.203153 GGCGGTGTGTGTGGTCTT 60.203 61.111 0.00 0.00 0.00 3.01
268 269 2.542907 GGCGGTGTGTGTGGTCTTG 61.543 63.158 0.00 0.00 0.00 3.02
269 270 1.817941 GCGGTGTGTGTGGTCTTGT 60.818 57.895 0.00 0.00 0.00 3.16
270 271 1.373590 GCGGTGTGTGTGGTCTTGTT 61.374 55.000 0.00 0.00 0.00 2.83
271 272 0.376852 CGGTGTGTGTGGTCTTGTTG 59.623 55.000 0.00 0.00 0.00 3.33
272 273 0.738389 GGTGTGTGTGGTCTTGTTGG 59.262 55.000 0.00 0.00 0.00 3.77
273 274 0.100503 GTGTGTGTGGTCTTGTTGGC 59.899 55.000 0.00 0.00 0.00 4.52
274 275 1.355210 GTGTGTGGTCTTGTTGGCG 59.645 57.895 0.00 0.00 0.00 5.69
275 276 2.331451 GTGTGGTCTTGTTGGCGC 59.669 61.111 0.00 0.00 0.00 6.53
276 277 2.904866 TGTGGTCTTGTTGGCGCC 60.905 61.111 22.73 22.73 0.00 6.53
277 278 2.904866 GTGGTCTTGTTGGCGCCA 60.905 61.111 29.03 29.03 0.00 5.69
278 279 2.124109 TGGTCTTGTTGGCGCCAA 60.124 55.556 37.30 37.30 0.00 4.52
279 280 1.754621 TGGTCTTGTTGGCGCCAAA 60.755 52.632 41.60 26.93 37.70 3.28
280 281 1.112315 TGGTCTTGTTGGCGCCAAAT 61.112 50.000 41.60 0.00 37.70 2.32
281 282 0.388520 GGTCTTGTTGGCGCCAAATC 60.389 55.000 41.60 29.98 37.70 2.17
282 283 0.729140 GTCTTGTTGGCGCCAAATCG 60.729 55.000 41.60 29.56 37.70 3.34
283 284 1.444212 CTTGTTGGCGCCAAATCGG 60.444 57.895 41.60 26.32 37.70 4.18
300 301 3.373565 GCCGGTGCCCTTTTGAGG 61.374 66.667 1.90 0.00 0.00 3.86
307 308 4.174305 CCCTTTTGAGGGCGTGTT 57.826 55.556 0.00 0.00 42.99 3.32
308 309 1.659794 CCCTTTTGAGGGCGTGTTG 59.340 57.895 0.00 0.00 42.99 3.33
309 310 1.106944 CCCTTTTGAGGGCGTGTTGT 61.107 55.000 0.00 0.00 42.99 3.32
310 311 1.600023 CCTTTTGAGGGCGTGTTGTA 58.400 50.000 0.00 0.00 0.00 2.41
311 312 1.950909 CCTTTTGAGGGCGTGTTGTAA 59.049 47.619 0.00 0.00 0.00 2.41
312 313 2.287368 CCTTTTGAGGGCGTGTTGTAAC 60.287 50.000 0.00 0.00 0.00 2.50
313 314 0.938713 TTTGAGGGCGTGTTGTAACG 59.061 50.000 0.00 0.00 46.30 3.18
314 315 0.104487 TTGAGGGCGTGTTGTAACGA 59.896 50.000 0.17 0.00 46.49 3.85
315 316 0.319083 TGAGGGCGTGTTGTAACGAT 59.681 50.000 0.17 0.00 46.49 3.73
316 317 1.270412 TGAGGGCGTGTTGTAACGATT 60.270 47.619 0.17 0.00 46.49 3.34
317 318 1.802365 GAGGGCGTGTTGTAACGATTT 59.198 47.619 0.17 0.00 46.49 2.17
318 319 2.223745 AGGGCGTGTTGTAACGATTTT 58.776 42.857 0.17 0.00 46.49 1.82
319 320 2.224784 AGGGCGTGTTGTAACGATTTTC 59.775 45.455 0.17 0.00 46.49 2.29
320 321 2.227556 GGCGTGTTGTAACGATTTTCG 58.772 47.619 0.17 0.00 46.49 3.46
321 322 1.635660 GCGTGTTGTAACGATTTTCGC 59.364 47.619 0.17 0.00 46.49 4.70
322 323 2.893837 CGTGTTGTAACGATTTTCGCA 58.106 42.857 0.00 0.00 46.49 5.10
323 324 3.475242 CGTGTTGTAACGATTTTCGCAT 58.525 40.909 0.00 0.00 46.49 4.73
324 325 3.294371 CGTGTTGTAACGATTTTCGCATG 59.706 43.478 0.00 0.00 46.49 4.06
325 326 3.602062 GTGTTGTAACGATTTTCGCATGG 59.398 43.478 0.00 0.00 45.12 3.66
326 327 3.168193 GTTGTAACGATTTTCGCATGGG 58.832 45.455 2.76 2.76 45.12 4.00
327 328 2.428491 TGTAACGATTTTCGCATGGGT 58.572 42.857 9.86 0.00 45.12 4.51
328 329 2.814919 TGTAACGATTTTCGCATGGGTT 59.185 40.909 9.86 0.00 45.12 4.11
329 330 3.253677 TGTAACGATTTTCGCATGGGTTT 59.746 39.130 9.86 0.00 45.12 3.27
330 331 2.629639 ACGATTTTCGCATGGGTTTC 57.370 45.000 9.86 2.50 45.12 2.78
331 332 1.201414 ACGATTTTCGCATGGGTTTCC 59.799 47.619 9.86 0.00 45.12 3.13
332 333 1.793714 CGATTTTCGCATGGGTTTCCG 60.794 52.381 9.86 5.07 31.41 4.30
333 334 1.201414 GATTTTCGCATGGGTTTCCGT 59.799 47.619 9.86 0.00 35.24 4.69
334 335 1.893544 TTTTCGCATGGGTTTCCGTA 58.106 45.000 9.86 0.00 35.24 4.02
335 336 1.893544 TTTCGCATGGGTTTCCGTAA 58.106 45.000 9.86 0.00 35.24 3.18
336 337 2.116827 TTCGCATGGGTTTCCGTAAT 57.883 45.000 9.86 0.00 35.24 1.89
337 338 2.116827 TCGCATGGGTTTCCGTAATT 57.883 45.000 9.86 0.00 35.24 1.40
338 339 3.263489 TCGCATGGGTTTCCGTAATTA 57.737 42.857 9.86 0.00 35.24 1.40
339 340 3.607741 TCGCATGGGTTTCCGTAATTAA 58.392 40.909 9.86 0.00 35.24 1.40
340 341 4.008330 TCGCATGGGTTTCCGTAATTAAA 58.992 39.130 9.86 0.00 35.24 1.52
341 342 4.099824 CGCATGGGTTTCCGTAATTAAAC 58.900 43.478 0.68 0.00 35.34 2.01
342 343 4.099824 GCATGGGTTTCCGTAATTAAACG 58.900 43.478 0.00 0.00 42.49 3.60
353 354 4.427312 CGTAATTAAACGGGCTACTCTGT 58.573 43.478 0.00 0.00 39.19 3.41
354 355 4.866486 CGTAATTAAACGGGCTACTCTGTT 59.134 41.667 0.00 0.00 39.19 3.16
355 356 5.005107 CGTAATTAAACGGGCTACTCTGTTC 59.995 44.000 0.00 0.00 39.19 3.18
356 357 3.323751 TTAAACGGGCTACTCTGTTCC 57.676 47.619 0.00 0.00 35.40 3.62
357 358 1.053424 AAACGGGCTACTCTGTTCCA 58.947 50.000 0.00 0.00 35.40 3.53
358 359 1.276622 AACGGGCTACTCTGTTCCAT 58.723 50.000 0.00 0.00 31.13 3.41
359 360 0.824759 ACGGGCTACTCTGTTCCATC 59.175 55.000 0.00 0.00 0.00 3.51
360 361 1.115467 CGGGCTACTCTGTTCCATCT 58.885 55.000 0.00 0.00 0.00 2.90
361 362 1.482593 CGGGCTACTCTGTTCCATCTT 59.517 52.381 0.00 0.00 0.00 2.40
362 363 2.093447 CGGGCTACTCTGTTCCATCTTT 60.093 50.000 0.00 0.00 0.00 2.52
363 364 3.619979 CGGGCTACTCTGTTCCATCTTTT 60.620 47.826 0.00 0.00 0.00 2.27
364 365 4.336280 GGGCTACTCTGTTCCATCTTTTT 58.664 43.478 0.00 0.00 0.00 1.94
384 385 6.952773 TTTTTAATGAATCGGGTCTATGGG 57.047 37.500 0.00 0.00 0.00 4.00
385 386 5.897851 TTTAATGAATCGGGTCTATGGGA 57.102 39.130 0.00 0.00 0.00 4.37
386 387 3.771577 AATGAATCGGGTCTATGGGAC 57.228 47.619 0.00 0.00 43.79 4.46
393 394 4.926207 GTCTATGGGACCGCGTTT 57.074 55.556 4.92 0.00 38.93 3.60
394 395 2.674296 GTCTATGGGACCGCGTTTC 58.326 57.895 4.92 0.00 38.93 2.78
395 396 0.108520 GTCTATGGGACCGCGTTTCA 60.109 55.000 4.92 0.00 38.93 2.69
396 397 0.828022 TCTATGGGACCGCGTTTCAT 59.172 50.000 4.92 6.06 0.00 2.57
397 398 2.033372 TCTATGGGACCGCGTTTCATA 58.967 47.619 4.92 6.91 0.00 2.15
398 399 2.431419 TCTATGGGACCGCGTTTCATAA 59.569 45.455 4.92 0.00 0.00 1.90
399 400 2.116827 ATGGGACCGCGTTTCATAAA 57.883 45.000 4.92 0.00 0.00 1.40
400 401 1.893544 TGGGACCGCGTTTCATAAAA 58.106 45.000 4.92 0.00 0.00 1.52
401 402 2.228059 TGGGACCGCGTTTCATAAAAA 58.772 42.857 4.92 0.00 0.00 1.94
423 424 2.050477 AAAACAATGTGCTACGCTGC 57.950 45.000 0.00 0.00 0.00 5.25
424 425 0.950836 AAACAATGTGCTACGCTGCA 59.049 45.000 0.00 0.00 41.05 4.41
430 431 2.664851 TGCTACGCTGCACACACC 60.665 61.111 0.00 0.00 38.12 4.16
431 432 3.777925 GCTACGCTGCACACACCG 61.778 66.667 0.00 0.00 0.00 4.94
432 433 2.049526 CTACGCTGCACACACCGA 60.050 61.111 0.00 0.00 0.00 4.69
433 434 1.663388 CTACGCTGCACACACCGAA 60.663 57.895 0.00 0.00 0.00 4.30
434 435 1.005512 TACGCTGCACACACCGAAT 60.006 52.632 0.00 0.00 0.00 3.34
435 436 1.011968 TACGCTGCACACACCGAATC 61.012 55.000 0.00 0.00 0.00 2.52
436 437 2.029288 CGCTGCACACACCGAATCT 61.029 57.895 0.00 0.00 0.00 2.40
437 438 1.790387 GCTGCACACACCGAATCTC 59.210 57.895 0.00 0.00 0.00 2.75
438 439 0.950555 GCTGCACACACCGAATCTCA 60.951 55.000 0.00 0.00 0.00 3.27
439 440 1.511850 CTGCACACACCGAATCTCAA 58.488 50.000 0.00 0.00 0.00 3.02
440 441 1.872952 CTGCACACACCGAATCTCAAA 59.127 47.619 0.00 0.00 0.00 2.69
441 442 1.872952 TGCACACACCGAATCTCAAAG 59.127 47.619 0.00 0.00 0.00 2.77
442 443 1.400242 GCACACACCGAATCTCAAAGC 60.400 52.381 0.00 0.00 0.00 3.51
533 564 2.094906 GCATTTCCGGGTTACTTTGACC 60.095 50.000 0.00 0.00 36.41 4.02
543 574 3.194968 GGTTACTTTGACCCTCGATCTCA 59.805 47.826 0.00 0.00 0.00 3.27
564 595 2.674380 CAAGTGGGCTGGTGGCTC 60.674 66.667 0.00 0.00 42.93 4.70
572 603 1.593265 GCTGGTGGCTCCCAAAATG 59.407 57.895 2.66 0.00 34.18 2.32
582 613 2.597455 CTCCCAAAATGGTCACCAACT 58.403 47.619 0.00 0.00 36.95 3.16
598 629 5.538433 TCACCAACTATATCCGTCATGATCA 59.462 40.000 0.00 0.00 0.00 2.92
626 657 3.302365 AAACTTTGTTGCCCATCATCG 57.698 42.857 0.00 0.00 0.00 3.84
629 660 3.884895 ACTTTGTTGCCCATCATCGATA 58.115 40.909 0.00 0.00 0.00 2.92
649 687 5.728507 CGATAGTACGTACGATCATGTGATG 59.271 44.000 33.55 19.57 37.94 3.07
653 691 1.187921 CGTACGATCATGTGATGTGCG 59.812 52.381 10.44 15.26 36.42 5.34
687 728 1.867865 GACGGCAGCTTAGAAATAGCC 59.132 52.381 0.00 0.00 39.47 3.93
713 757 2.298446 GCCTGCTAGATCTACTGATGCA 59.702 50.000 11.75 11.75 32.19 3.96
732 776 3.120792 GCATCATGCATGACATCAAACC 58.879 45.455 30.92 9.66 44.26 3.27
735 779 2.164827 TCATGCATGACATCAAACCAGC 59.835 45.455 25.42 0.00 36.64 4.85
743 787 3.503363 TGACATCAAACCAGCAGCTAAAG 59.497 43.478 0.00 0.00 0.00 1.85
744 788 2.229784 ACATCAAACCAGCAGCTAAAGC 59.770 45.455 0.00 0.00 42.49 3.51
745 789 1.979855 TCAAACCAGCAGCTAAAGCA 58.020 45.000 4.54 0.00 45.16 3.91
746 790 1.608590 TCAAACCAGCAGCTAAAGCAC 59.391 47.619 4.54 0.00 45.16 4.40
747 791 0.961753 AAACCAGCAGCTAAAGCACC 59.038 50.000 4.54 0.00 45.16 5.01
748 792 0.895559 AACCAGCAGCTAAAGCACCC 60.896 55.000 4.54 0.00 45.16 4.61
749 793 1.001641 CCAGCAGCTAAAGCACCCT 60.002 57.895 4.54 0.00 45.16 4.34
750 794 0.253044 CCAGCAGCTAAAGCACCCTA 59.747 55.000 4.54 0.00 45.16 3.53
751 795 1.340017 CCAGCAGCTAAAGCACCCTAA 60.340 52.381 4.54 0.00 45.16 2.69
752 796 2.436417 CAGCAGCTAAAGCACCCTAAA 58.564 47.619 4.54 0.00 45.16 1.85
753 797 2.819608 CAGCAGCTAAAGCACCCTAAAA 59.180 45.455 4.54 0.00 45.16 1.52
754 798 3.255642 CAGCAGCTAAAGCACCCTAAAAA 59.744 43.478 4.54 0.00 45.16 1.94
862 969 5.260027 ACTTATTTAACGTTCGACACTGC 57.740 39.130 2.82 0.00 0.00 4.40
889 996 9.458374 ACAAAATAAGAAACAAAATAGGTGTCG 57.542 29.630 0.00 0.00 0.00 4.35
997 1114 1.614525 AGCCAGCTCCTGATCACCA 60.615 57.895 0.00 0.00 32.44 4.17
1374 1494 4.415150 AGGCCGCACTGGGTCATG 62.415 66.667 0.00 0.00 38.63 3.07
1441 1562 0.539438 GGTTTGACCCACCTGCATGA 60.539 55.000 0.00 0.00 30.04 3.07
1442 1563 1.549203 GTTTGACCCACCTGCATGAT 58.451 50.000 0.00 0.00 0.00 2.45
1443 1564 1.895131 GTTTGACCCACCTGCATGATT 59.105 47.619 0.00 0.00 0.00 2.57
1496 1662 3.378742 ACGTCTCAAATGATCTAGCTCGT 59.621 43.478 0.00 0.00 0.00 4.18
1705 1874 2.159000 AGTTGACGAAAAAGAGGTCCGT 60.159 45.455 0.00 0.00 36.08 4.69
1725 1894 2.682136 TCGGGGTCATTCGGAGCA 60.682 61.111 0.00 0.00 45.90 4.26
1862 2031 1.284657 AAGAATCATCAGAGCACGCG 58.715 50.000 3.53 3.53 0.00 6.01
1916 2085 3.110178 GTGGTGTACGTGGCGCTC 61.110 66.667 7.64 0.00 0.00 5.03
2275 2455 2.359975 GGCGAAGAAGGTGGGGTG 60.360 66.667 0.00 0.00 0.00 4.61
2276 2456 2.430367 GCGAAGAAGGTGGGGTGT 59.570 61.111 0.00 0.00 0.00 4.16
2278 2458 2.058675 CGAAGAAGGTGGGGTGTCT 58.941 57.895 0.00 0.00 0.00 3.41
2279 2459 0.037232 CGAAGAAGGTGGGGTGTCTC 60.037 60.000 0.00 0.00 0.00 3.36
2384 2564 1.144936 GAGGAGATTCGTGGCAGGG 59.855 63.158 7.42 0.00 0.00 4.45
2523 3837 0.739813 GGCCGCTACTTCGTGAACAT 60.740 55.000 0.00 0.00 0.00 2.71
2524 3838 0.645868 GCCGCTACTTCGTGAACATC 59.354 55.000 0.00 0.00 0.00 3.06
2538 3941 7.278461 TCGTGAACATCAAGGGAAATTTTTA 57.722 32.000 0.00 0.00 0.00 1.52
2560 4145 7.528481 TTATGTTTGATTCTTTCATGCATGC 57.472 32.000 22.25 11.82 33.72 4.06
2641 5931 7.709182 TGAAACTGTAGCATATGTGGTGTATAC 59.291 37.037 4.21 0.00 37.28 1.47
2645 5936 7.710907 ACTGTAGCATATGTGGTGTATACTTTG 59.289 37.037 4.21 0.00 37.28 2.77
2663 5954 6.959639 ACTTTGGCTCAGAATTGTAGAAAA 57.040 33.333 0.00 0.00 0.00 2.29
2666 5957 7.449704 ACTTTGGCTCAGAATTGTAGAAAAGAT 59.550 33.333 0.00 0.00 0.00 2.40
2806 6125 4.082190 TGGTTAAGTCTGAATCGACTGAGG 60.082 45.833 8.11 0.00 43.14 3.86
2813 6132 2.100584 CTGAATCGACTGAGGCTTAGCT 59.899 50.000 6.16 0.00 0.00 3.32
3010 6362 2.183478 TCATGAGCACATCCGTTGTT 57.817 45.000 0.00 0.00 36.00 2.83
3080 6434 2.978156 AGAAGGGAAAATCAGTGGCA 57.022 45.000 0.00 0.00 0.00 4.92
3093 6460 3.814625 TCAGTGGCATGTGAAACTAACA 58.185 40.909 0.00 0.00 38.04 2.41
3202 6569 0.657312 ACGCACATGTGTTGTCACTG 59.343 50.000 26.01 9.18 44.14 3.66
3282 6649 4.565564 GCAAACTACGTACATTACCTCCAG 59.434 45.833 0.00 0.00 0.00 3.86
3339 6706 3.865011 ACAACAAGTGCATGACAAACA 57.135 38.095 0.00 0.00 0.00 2.83
3408 6775 4.141869 ACCAAACTTAAGTCACCGTGTACT 60.142 41.667 8.95 0.00 0.00 2.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.819259 GGCACACCAAGACTTCTGCA 60.819 55.000 0.00 0.00 35.26 4.41
3 4 1.071471 CCGGCACACCAAGACTTCT 59.929 57.895 0.00 0.00 34.57 2.85
4 5 1.966451 CCCGGCACACCAAGACTTC 60.966 63.158 0.00 0.00 34.57 3.01
5 6 2.113139 CCCGGCACACCAAGACTT 59.887 61.111 0.00 0.00 34.57 3.01
6 7 2.279037 AAACCCGGCACACCAAGACT 62.279 55.000 0.00 0.00 34.57 3.24
7 8 1.826487 AAACCCGGCACACCAAGAC 60.826 57.895 0.00 0.00 34.57 3.01
8 9 1.826054 CAAACCCGGCACACCAAGA 60.826 57.895 0.00 0.00 34.57 3.02
9 10 2.727544 CAAACCCGGCACACCAAG 59.272 61.111 0.00 0.00 34.57 3.61
10 11 2.835431 CCAAACCCGGCACACCAA 60.835 61.111 0.00 0.00 34.57 3.67
11 12 4.130554 ACCAAACCCGGCACACCA 62.131 61.111 0.00 0.00 34.57 4.17
12 13 3.292159 GACCAAACCCGGCACACC 61.292 66.667 0.00 0.00 0.00 4.16
13 14 3.656045 CGACCAAACCCGGCACAC 61.656 66.667 0.00 0.00 0.00 3.82
14 15 4.178169 ACGACCAAACCCGGCACA 62.178 61.111 0.00 0.00 0.00 4.57
15 16 3.351416 GACGACCAAACCCGGCAC 61.351 66.667 0.00 0.00 33.27 5.01
16 17 3.109592 AAGACGACCAAACCCGGCA 62.110 57.895 0.00 0.00 36.01 5.69
17 18 2.281276 AAGACGACCAAACCCGGC 60.281 61.111 0.00 0.00 0.00 6.13
18 19 0.949105 CTCAAGACGACCAAACCCGG 60.949 60.000 0.00 0.00 0.00 5.73
19 20 1.566018 GCTCAAGACGACCAAACCCG 61.566 60.000 0.00 0.00 0.00 5.28
20 21 1.235281 GGCTCAAGACGACCAAACCC 61.235 60.000 0.00 0.00 0.00 4.11
21 22 2.244946 GGCTCAAGACGACCAAACC 58.755 57.895 0.00 0.00 0.00 3.27
30 31 3.423154 CAACGGCCGGCTCAAGAC 61.423 66.667 31.76 7.30 0.00 3.01
31 32 4.697756 CCAACGGCCGGCTCAAGA 62.698 66.667 31.76 0.00 0.00 3.02
42 43 4.278513 TCAACCTGGCCCCAACGG 62.279 66.667 0.00 0.00 0.00 4.44
43 44 2.672996 CTCAACCTGGCCCCAACG 60.673 66.667 0.00 0.00 0.00 4.10
44 45 2.283173 CCTCAACCTGGCCCCAAC 60.283 66.667 0.00 0.00 0.00 3.77
45 46 2.451493 TCCTCAACCTGGCCCCAA 60.451 61.111 0.00 0.00 0.00 4.12
46 47 2.935481 CTCCTCAACCTGGCCCCA 60.935 66.667 0.00 0.00 0.00 4.96
47 48 2.936032 ACTCCTCAACCTGGCCCC 60.936 66.667 0.00 0.00 0.00 5.80
48 49 2.671682 GACTCCTCAACCTGGCCC 59.328 66.667 0.00 0.00 0.00 5.80
49 50 2.671682 GGACTCCTCAACCTGGCC 59.328 66.667 0.00 0.00 0.00 5.36
50 51 2.266055 CGGACTCCTCAACCTGGC 59.734 66.667 0.00 0.00 0.00 4.85
51 52 1.592223 GACGGACTCCTCAACCTGG 59.408 63.158 0.00 0.00 0.00 4.45
52 53 1.592223 GGACGGACTCCTCAACCTG 59.408 63.158 0.00 0.00 35.89 4.00
53 54 1.977544 CGGACGGACTCCTCAACCT 60.978 63.158 0.00 0.00 36.80 3.50
54 55 2.572284 CGGACGGACTCCTCAACC 59.428 66.667 0.00 0.00 36.80 3.77
55 56 2.572284 CCGGACGGACTCCTCAAC 59.428 66.667 4.40 0.00 36.80 3.18
56 57 2.678934 CCCGGACGGACTCCTCAA 60.679 66.667 13.13 0.00 36.80 3.02
57 58 3.518552 AACCCGGACGGACTCCTCA 62.519 63.158 13.13 0.00 36.80 3.86
58 59 2.679287 AACCCGGACGGACTCCTC 60.679 66.667 13.13 0.00 36.80 3.71
59 60 2.995574 CAACCCGGACGGACTCCT 60.996 66.667 13.13 0.00 36.80 3.69
60 61 4.078516 CCAACCCGGACGGACTCC 62.079 72.222 13.13 0.00 36.56 3.85
61 62 2.993264 TCCAACCCGGACGGACTC 60.993 66.667 13.13 0.00 39.64 3.36
62 63 2.995574 CTCCAACCCGGACGGACT 60.996 66.667 13.13 0.00 39.64 3.85
63 64 2.993264 TCTCCAACCCGGACGGAC 60.993 66.667 13.13 0.00 39.64 4.79
64 65 2.678934 CTCTCCAACCCGGACGGA 60.679 66.667 13.13 4.43 39.64 4.69
65 66 2.108278 AAACTCTCCAACCCGGACGG 62.108 60.000 0.73 3.25 39.64 4.79
66 67 0.949105 CAAACTCTCCAACCCGGACG 60.949 60.000 0.73 0.00 39.64 4.79
67 68 0.605589 CCAAACTCTCCAACCCGGAC 60.606 60.000 0.73 0.00 39.64 4.79
68 69 1.758592 CCAAACTCTCCAACCCGGA 59.241 57.895 0.73 0.00 43.61 5.14
69 70 1.971695 GCCAAACTCTCCAACCCGG 60.972 63.158 0.00 0.00 0.00 5.73
70 71 1.971695 GGCCAAACTCTCCAACCCG 60.972 63.158 0.00 0.00 0.00 5.28
71 72 1.971695 CGGCCAAACTCTCCAACCC 60.972 63.158 2.24 0.00 0.00 4.11
72 73 2.626780 GCGGCCAAACTCTCCAACC 61.627 63.158 2.24 0.00 0.00 3.77
73 74 2.954611 GCGGCCAAACTCTCCAAC 59.045 61.111 2.24 0.00 0.00 3.77
74 75 2.668212 CGCGGCCAAACTCTCCAA 60.668 61.111 2.24 0.00 0.00 3.53
75 76 3.876589 GACGCGGCCAAACTCTCCA 62.877 63.158 12.47 0.00 0.00 3.86
76 77 3.119096 GACGCGGCCAAACTCTCC 61.119 66.667 12.47 0.00 0.00 3.71
77 78 3.479269 CGACGCGGCCAAACTCTC 61.479 66.667 12.47 0.00 0.00 3.20
78 79 3.916392 CTCGACGCGGCCAAACTCT 62.916 63.158 12.47 0.00 0.00 3.24
79 80 3.479269 CTCGACGCGGCCAAACTC 61.479 66.667 12.47 0.00 0.00 3.01
98 99 3.521796 GCTCAATCCGGCCAAGCC 61.522 66.667 2.24 0.00 46.75 4.35
99 100 2.342650 TTGCTCAATCCGGCCAAGC 61.343 57.895 2.24 3.61 0.00 4.01
100 101 1.508088 GTTGCTCAATCCGGCCAAG 59.492 57.895 2.24 0.00 0.00 3.61
101 102 1.976474 GGTTGCTCAATCCGGCCAA 60.976 57.895 2.24 0.00 0.00 4.52
102 103 2.361104 GGTTGCTCAATCCGGCCA 60.361 61.111 2.24 0.00 0.00 5.36
103 104 3.140814 GGGTTGCTCAATCCGGCC 61.141 66.667 0.00 0.00 30.99 6.13
107 108 3.140814 GGCCGGGTTGCTCAATCC 61.141 66.667 2.18 1.83 38.22 3.01
108 109 2.361104 TGGCCGGGTTGCTCAATC 60.361 61.111 2.18 0.00 0.00 2.67
109 110 2.361610 CTGGCCGGGTTGCTCAAT 60.362 61.111 2.57 0.00 0.00 2.57
110 111 4.659172 CCTGGCCGGGTTGCTCAA 62.659 66.667 23.90 0.00 0.00 3.02
115 116 4.738998 TCATGCCTGGCCGGGTTG 62.739 66.667 31.62 26.68 0.00 3.77
116 117 4.431131 CTCATGCCTGGCCGGGTT 62.431 66.667 31.62 17.04 0.00 4.11
127 128 1.077930 TCCTCAAGCTGGCTCATGC 60.078 57.895 0.00 0.00 38.76 4.06
128 129 3.082165 CTCCTCAAGCTGGCTCATG 57.918 57.895 0.00 0.00 0.00 3.07
138 139 2.435586 CCAGCACCGCTCCTCAAG 60.436 66.667 0.00 0.00 36.40 3.02
139 140 3.240134 GACCAGCACCGCTCCTCAA 62.240 63.158 0.00 0.00 36.40 3.02
140 141 3.695606 GACCAGCACCGCTCCTCA 61.696 66.667 0.00 0.00 36.40 3.86
141 142 4.459089 GGACCAGCACCGCTCCTC 62.459 72.222 0.00 0.00 36.40 3.71
148 149 1.388837 AAAACAACGGGACCAGCACC 61.389 55.000 0.00 0.00 0.00 5.01
149 150 0.458260 AAAAACAACGGGACCAGCAC 59.542 50.000 0.00 0.00 0.00 4.40
150 151 0.457851 CAAAAACAACGGGACCAGCA 59.542 50.000 0.00 0.00 0.00 4.41
151 152 0.741915 TCAAAAACAACGGGACCAGC 59.258 50.000 0.00 0.00 0.00 4.85
152 153 3.512033 TTTCAAAAACAACGGGACCAG 57.488 42.857 0.00 0.00 0.00 4.00
153 154 3.368531 CCTTTTCAAAAACAACGGGACCA 60.369 43.478 0.00 0.00 0.00 4.02
154 155 3.119065 TCCTTTTCAAAAACAACGGGACC 60.119 43.478 0.00 0.00 0.00 4.46
155 156 4.112716 TCCTTTTCAAAAACAACGGGAC 57.887 40.909 0.00 0.00 0.00 4.46
156 157 4.202172 GGATCCTTTTCAAAAACAACGGGA 60.202 41.667 3.84 0.00 0.00 5.14
157 158 4.055360 GGATCCTTTTCAAAAACAACGGG 58.945 43.478 3.84 0.00 0.00 5.28
158 159 3.733727 CGGATCCTTTTCAAAAACAACGG 59.266 43.478 10.75 0.00 0.00 4.44
159 160 3.733727 CCGGATCCTTTTCAAAAACAACG 59.266 43.478 10.75 0.00 0.00 4.10
160 161 4.055360 CCCGGATCCTTTTCAAAAACAAC 58.945 43.478 10.75 0.00 0.00 3.32
161 162 3.707102 ACCCGGATCCTTTTCAAAAACAA 59.293 39.130 10.75 0.00 0.00 2.83
162 163 3.301274 ACCCGGATCCTTTTCAAAAACA 58.699 40.909 10.75 0.00 0.00 2.83
163 164 4.304110 GAACCCGGATCCTTTTCAAAAAC 58.696 43.478 10.75 0.00 0.00 2.43
164 165 3.322541 GGAACCCGGATCCTTTTCAAAAA 59.677 43.478 16.53 0.00 33.98 1.94
165 166 2.894765 GGAACCCGGATCCTTTTCAAAA 59.105 45.455 16.53 0.00 33.98 2.44
166 167 2.521126 GGAACCCGGATCCTTTTCAAA 58.479 47.619 16.53 0.00 33.98 2.69
167 168 1.612199 CGGAACCCGGATCCTTTTCAA 60.612 52.381 20.00 0.00 44.15 2.69
168 169 0.035820 CGGAACCCGGATCCTTTTCA 60.036 55.000 20.00 0.00 44.15 2.69
169 170 2.776659 CGGAACCCGGATCCTTTTC 58.223 57.895 20.00 9.00 44.15 2.29
180 181 2.613506 CGAACAGGCAACGGAACCC 61.614 63.158 0.00 0.00 46.39 4.11
181 182 2.943653 CGAACAGGCAACGGAACC 59.056 61.111 0.00 0.00 46.39 3.62
185 186 4.636435 ACCCCGAACAGGCAACGG 62.636 66.667 0.00 0.00 45.24 4.44
186 187 2.593436 AACCCCGAACAGGCAACG 60.593 61.111 0.00 0.00 46.39 4.10
187 188 0.893727 ATGAACCCCGAACAGGCAAC 60.894 55.000 0.00 0.00 39.21 4.17
188 189 0.608035 GATGAACCCCGAACAGGCAA 60.608 55.000 0.00 0.00 39.21 4.52
189 190 1.002624 GATGAACCCCGAACAGGCA 60.003 57.895 0.00 0.00 39.21 4.75
190 191 1.749258 GGATGAACCCCGAACAGGC 60.749 63.158 0.00 0.00 39.21 4.85
191 192 4.637771 GGATGAACCCCGAACAGG 57.362 61.111 0.00 0.00 40.63 4.00
208 209 3.067480 GCATGCATTGTGTCGGGGG 62.067 63.158 14.21 0.00 0.00 5.40
209 210 2.274232 CTGCATGCATTGTGTCGGGG 62.274 60.000 22.97 0.79 0.00 5.73
210 211 1.138036 CTGCATGCATTGTGTCGGG 59.862 57.895 22.97 1.63 0.00 5.14
211 212 1.515519 GCTGCATGCATTGTGTCGG 60.516 57.895 22.97 7.95 42.31 4.79
212 213 1.515519 GGCTGCATGCATTGTGTCG 60.516 57.895 22.97 8.76 45.15 4.35
213 214 0.179145 GAGGCTGCATGCATTGTGTC 60.179 55.000 22.97 11.26 45.15 3.67
214 215 1.888018 GAGGCTGCATGCATTGTGT 59.112 52.632 22.97 4.27 45.15 3.72
215 216 1.226575 CGAGGCTGCATGCATTGTG 60.227 57.895 22.97 10.78 45.15 3.33
216 217 1.377594 TCGAGGCTGCATGCATTGT 60.378 52.632 22.97 8.27 45.15 2.71
217 218 1.063649 GTCGAGGCTGCATGCATTG 59.936 57.895 22.97 12.00 45.15 2.82
218 219 2.466982 CGTCGAGGCTGCATGCATT 61.467 57.895 22.97 10.11 45.15 3.56
219 220 2.893895 CGTCGAGGCTGCATGCAT 60.894 61.111 22.97 6.38 45.15 3.96
222 223 3.190849 CACCGTCGAGGCTGCATG 61.191 66.667 0.50 0.00 46.52 4.06
223 224 3.240134 AACACCGTCGAGGCTGCAT 62.240 57.895 0.50 0.00 46.52 3.96
224 225 3.858868 GAACACCGTCGAGGCTGCA 62.859 63.158 0.50 0.00 46.52 4.41
225 226 3.112709 GAACACCGTCGAGGCTGC 61.113 66.667 0.00 0.00 46.52 5.25
226 227 1.444553 GAGAACACCGTCGAGGCTG 60.445 63.158 0.00 0.00 46.52 4.85
227 228 1.179814 AAGAGAACACCGTCGAGGCT 61.180 55.000 0.00 0.00 46.52 4.58
228 229 0.733223 GAAGAGAACACCGTCGAGGC 60.733 60.000 0.00 0.00 46.52 4.70
230 231 1.464355 CGAGAAGAGAACACCGTCGAG 60.464 57.143 0.00 0.00 0.00 4.04
231 232 0.516001 CGAGAAGAGAACACCGTCGA 59.484 55.000 0.00 0.00 0.00 4.20
232 233 0.454620 CCGAGAAGAGAACACCGTCG 60.455 60.000 0.00 0.00 0.00 5.12
233 234 0.733223 GCCGAGAAGAGAACACCGTC 60.733 60.000 0.00 0.00 0.00 4.79
234 235 1.289380 GCCGAGAAGAGAACACCGT 59.711 57.895 0.00 0.00 0.00 4.83
235 236 1.801913 CGCCGAGAAGAGAACACCG 60.802 63.158 0.00 0.00 0.00 4.94
236 237 1.446272 CCGCCGAGAAGAGAACACC 60.446 63.158 0.00 0.00 0.00 4.16
237 238 1.009389 CACCGCCGAGAAGAGAACAC 61.009 60.000 0.00 0.00 0.00 3.32
238 239 1.289066 CACCGCCGAGAAGAGAACA 59.711 57.895 0.00 0.00 0.00 3.18
239 240 1.009389 CACACCGCCGAGAAGAGAAC 61.009 60.000 0.00 0.00 0.00 3.01
240 241 1.289066 CACACCGCCGAGAAGAGAA 59.711 57.895 0.00 0.00 0.00 2.87
241 242 1.901948 ACACACCGCCGAGAAGAGA 60.902 57.895 0.00 0.00 0.00 3.10
242 243 1.734477 CACACACCGCCGAGAAGAG 60.734 63.158 0.00 0.00 0.00 2.85
243 244 2.338620 CACACACCGCCGAGAAGA 59.661 61.111 0.00 0.00 0.00 2.87
244 245 2.029073 ACACACACCGCCGAGAAG 59.971 61.111 0.00 0.00 0.00 2.85
245 246 2.279851 CACACACACCGCCGAGAA 60.280 61.111 0.00 0.00 0.00 2.87
246 247 4.293648 CCACACACACCGCCGAGA 62.294 66.667 0.00 0.00 0.00 4.04
247 248 4.602259 ACCACACACACCGCCGAG 62.602 66.667 0.00 0.00 0.00 4.63
248 249 4.595538 GACCACACACACCGCCGA 62.596 66.667 0.00 0.00 0.00 5.54
249 250 4.602259 AGACCACACACACCGCCG 62.602 66.667 0.00 0.00 0.00 6.46
250 251 2.203153 AAGACCACACACACCGCC 60.203 61.111 0.00 0.00 0.00 6.13
251 252 1.373590 AACAAGACCACACACACCGC 61.374 55.000 0.00 0.00 0.00 5.68
252 253 0.376852 CAACAAGACCACACACACCG 59.623 55.000 0.00 0.00 0.00 4.94
253 254 0.738389 CCAACAAGACCACACACACC 59.262 55.000 0.00 0.00 0.00 4.16
254 255 0.100503 GCCAACAAGACCACACACAC 59.899 55.000 0.00 0.00 0.00 3.82
255 256 1.372838 CGCCAACAAGACCACACACA 61.373 55.000 0.00 0.00 0.00 3.72
256 257 1.355210 CGCCAACAAGACCACACAC 59.645 57.895 0.00 0.00 0.00 3.82
257 258 2.477176 GCGCCAACAAGACCACACA 61.477 57.895 0.00 0.00 0.00 3.72
258 259 2.331451 GCGCCAACAAGACCACAC 59.669 61.111 0.00 0.00 0.00 3.82
259 260 2.904866 GGCGCCAACAAGACCACA 60.905 61.111 24.80 0.00 0.00 4.17
260 261 2.010582 TTTGGCGCCAACAAGACCAC 62.011 55.000 40.36 2.72 35.46 4.16
261 262 1.112315 ATTTGGCGCCAACAAGACCA 61.112 50.000 40.36 24.74 35.46 4.02
262 263 0.388520 GATTTGGCGCCAACAAGACC 60.389 55.000 40.36 14.94 35.46 3.85
263 264 0.729140 CGATTTGGCGCCAACAAGAC 60.729 55.000 40.36 25.45 35.46 3.01
264 265 1.578926 CGATTTGGCGCCAACAAGA 59.421 52.632 40.36 26.69 35.46 3.02
265 266 1.444212 CCGATTTGGCGCCAACAAG 60.444 57.895 40.36 30.03 35.46 3.16
266 267 2.647875 CCGATTTGGCGCCAACAA 59.352 55.556 40.36 27.87 35.46 2.83
291 292 1.600023 TACAACACGCCCTCAAAAGG 58.400 50.000 0.00 0.00 42.95 3.11
292 293 2.601266 CGTTACAACACGCCCTCAAAAG 60.601 50.000 0.00 0.00 32.43 2.27
293 294 1.331138 CGTTACAACACGCCCTCAAAA 59.669 47.619 0.00 0.00 32.43 2.44
294 295 0.938713 CGTTACAACACGCCCTCAAA 59.061 50.000 0.00 0.00 32.43 2.69
295 296 0.104487 TCGTTACAACACGCCCTCAA 59.896 50.000 0.00 0.00 40.14 3.02
296 297 0.319083 ATCGTTACAACACGCCCTCA 59.681 50.000 0.00 0.00 40.14 3.86
297 298 1.435577 AATCGTTACAACACGCCCTC 58.564 50.000 0.00 0.00 40.14 4.30
298 299 1.886886 AAATCGTTACAACACGCCCT 58.113 45.000 0.00 0.00 40.14 5.19
299 300 2.577450 GAAAATCGTTACAACACGCCC 58.423 47.619 0.00 0.00 40.14 6.13
300 301 2.227556 CGAAAATCGTTACAACACGCC 58.772 47.619 0.00 0.00 40.14 5.68
301 302 1.635660 GCGAAAATCGTTACAACACGC 59.364 47.619 0.00 0.00 42.81 5.34
302 303 2.893837 TGCGAAAATCGTTACAACACG 58.106 42.857 1.45 0.00 42.81 4.49
303 304 3.602062 CCATGCGAAAATCGTTACAACAC 59.398 43.478 1.45 0.00 42.81 3.32
304 305 3.365465 CCCATGCGAAAATCGTTACAACA 60.365 43.478 1.45 0.00 42.81 3.33
305 306 3.168193 CCCATGCGAAAATCGTTACAAC 58.832 45.455 1.45 0.00 42.81 3.32
306 307 2.814919 ACCCATGCGAAAATCGTTACAA 59.185 40.909 1.45 0.00 42.81 2.41
307 308 2.428491 ACCCATGCGAAAATCGTTACA 58.572 42.857 1.45 0.00 42.81 2.41
308 309 3.481112 AACCCATGCGAAAATCGTTAC 57.519 42.857 1.45 0.00 42.81 2.50
309 310 3.119779 GGAAACCCATGCGAAAATCGTTA 60.120 43.478 1.45 0.00 42.81 3.18
310 311 2.352323 GGAAACCCATGCGAAAATCGTT 60.352 45.455 1.45 0.00 42.81 3.85
311 312 1.201414 GGAAACCCATGCGAAAATCGT 59.799 47.619 1.45 0.00 42.81 3.73
312 313 1.793714 CGGAAACCCATGCGAAAATCG 60.794 52.381 0.00 0.00 43.89 3.34
313 314 1.201414 ACGGAAACCCATGCGAAAATC 59.799 47.619 0.00 0.00 37.59 2.17
314 315 1.253100 ACGGAAACCCATGCGAAAAT 58.747 45.000 0.00 0.00 37.59 1.82
315 316 1.893544 TACGGAAACCCATGCGAAAA 58.106 45.000 0.00 0.00 37.59 2.29
316 317 1.893544 TTACGGAAACCCATGCGAAA 58.106 45.000 0.00 0.00 37.59 3.46
317 318 2.116827 ATTACGGAAACCCATGCGAA 57.883 45.000 0.00 0.00 37.59 4.70
318 319 2.116827 AATTACGGAAACCCATGCGA 57.883 45.000 0.00 0.00 37.59 5.10
319 320 4.099824 GTTTAATTACGGAAACCCATGCG 58.900 43.478 0.00 0.00 40.25 4.73
320 321 4.099824 CGTTTAATTACGGAAACCCATGC 58.900 43.478 0.00 0.00 37.86 4.06
331 332 4.427312 ACAGAGTAGCCCGTTTAATTACG 58.573 43.478 0.00 0.00 41.06 3.18
332 333 5.292834 GGAACAGAGTAGCCCGTTTAATTAC 59.707 44.000 0.00 0.00 0.00 1.89
333 334 5.046448 TGGAACAGAGTAGCCCGTTTAATTA 60.046 40.000 0.00 0.00 0.00 1.40
334 335 4.259356 GGAACAGAGTAGCCCGTTTAATT 58.741 43.478 0.00 0.00 0.00 1.40
335 336 3.262405 TGGAACAGAGTAGCCCGTTTAAT 59.738 43.478 0.00 0.00 0.00 1.40
336 337 2.633967 TGGAACAGAGTAGCCCGTTTAA 59.366 45.455 0.00 0.00 0.00 1.52
337 338 2.250031 TGGAACAGAGTAGCCCGTTTA 58.750 47.619 0.00 0.00 0.00 2.01
338 339 1.053424 TGGAACAGAGTAGCCCGTTT 58.947 50.000 0.00 0.00 0.00 3.60
339 340 2.754648 TGGAACAGAGTAGCCCGTT 58.245 52.632 0.00 0.00 0.00 4.44
340 341 4.533318 TGGAACAGAGTAGCCCGT 57.467 55.556 0.00 0.00 0.00 5.28
361 362 6.544564 GTCCCATAGACCCGATTCATTAAAAA 59.455 38.462 0.00 0.00 39.84 1.94
362 363 6.059484 GTCCCATAGACCCGATTCATTAAAA 58.941 40.000 0.00 0.00 39.84 1.52
363 364 5.617252 GTCCCATAGACCCGATTCATTAAA 58.383 41.667 0.00 0.00 39.84 1.52
364 365 5.223449 GTCCCATAGACCCGATTCATTAA 57.777 43.478 0.00 0.00 39.84 1.40
365 366 4.884668 GTCCCATAGACCCGATTCATTA 57.115 45.455 0.00 0.00 39.84 1.90
366 367 3.771577 GTCCCATAGACCCGATTCATT 57.228 47.619 0.00 0.00 39.84 2.57
376 377 0.108520 TGAAACGCGGTCCCATAGAC 60.109 55.000 12.47 0.00 45.51 2.59
377 378 0.828022 ATGAAACGCGGTCCCATAGA 59.172 50.000 12.47 0.00 0.00 1.98
378 379 2.519377 TATGAAACGCGGTCCCATAG 57.481 50.000 12.47 0.00 0.00 2.23
379 380 2.983907 TTATGAAACGCGGTCCCATA 57.016 45.000 12.47 12.90 0.00 2.74
380 381 2.116827 TTTATGAAACGCGGTCCCAT 57.883 45.000 12.47 13.99 0.00 4.00
381 382 1.893544 TTTTATGAAACGCGGTCCCA 58.106 45.000 12.47 6.32 0.00 4.37
382 383 2.993449 TTTTTATGAAACGCGGTCCC 57.007 45.000 12.47 0.00 0.00 4.46
419 420 0.950555 TGAGATTCGGTGTGTGCAGC 60.951 55.000 0.00 0.00 39.54 5.25
420 421 1.511850 TTGAGATTCGGTGTGTGCAG 58.488 50.000 0.00 0.00 0.00 4.41
421 422 1.872952 CTTTGAGATTCGGTGTGTGCA 59.127 47.619 0.00 0.00 0.00 4.57
422 423 1.400242 GCTTTGAGATTCGGTGTGTGC 60.400 52.381 0.00 0.00 0.00 4.57
423 424 1.872952 TGCTTTGAGATTCGGTGTGTG 59.127 47.619 0.00 0.00 0.00 3.82
424 425 1.873591 GTGCTTTGAGATTCGGTGTGT 59.126 47.619 0.00 0.00 0.00 3.72
425 426 1.197721 GGTGCTTTGAGATTCGGTGTG 59.802 52.381 0.00 0.00 0.00 3.82
426 427 1.072331 AGGTGCTTTGAGATTCGGTGT 59.928 47.619 0.00 0.00 0.00 4.16
427 428 1.813513 AGGTGCTTTGAGATTCGGTG 58.186 50.000 0.00 0.00 0.00 4.94
428 429 2.568623 AAGGTGCTTTGAGATTCGGT 57.431 45.000 0.00 0.00 0.00 4.69
442 443 1.066587 TTTTTCGCGGGCAAAGGTG 59.933 52.632 6.13 0.00 0.00 4.00
558 589 0.603065 GTGACCATTTTGGGAGCCAC 59.397 55.000 0.00 0.00 43.37 5.01
564 595 5.301805 GGATATAGTTGGTGACCATTTTGGG 59.698 44.000 4.56 0.00 43.37 4.12
572 603 4.038763 TCATGACGGATATAGTTGGTGACC 59.961 45.833 0.00 0.00 0.00 4.02
598 629 5.606348 TGGGCAACAAAGTTTAAACTCAT 57.394 34.783 20.78 10.57 36.75 2.90
608 639 2.198827 TCGATGATGGGCAACAAAGT 57.801 45.000 0.00 0.00 39.74 2.66
609 640 3.879295 ACTATCGATGATGGGCAACAAAG 59.121 43.478 8.54 0.00 39.74 2.77
610 641 3.884895 ACTATCGATGATGGGCAACAAA 58.115 40.909 8.54 0.00 39.74 2.83
626 657 6.520104 CACATCACATGATCGTACGTACTATC 59.480 42.308 25.49 25.49 31.21 2.08
629 660 4.598062 CACATCACATGATCGTACGTACT 58.402 43.478 22.55 5.64 31.21 2.73
649 687 3.479949 CCGTCTAGAAAATACGTACGCAC 59.520 47.826 16.72 0.67 34.90 5.34
653 691 3.485013 GCTGCCGTCTAGAAAATACGTAC 59.515 47.826 0.00 0.00 34.90 3.67
687 728 2.028294 CAGTAGATCTAGCAGGCCATGG 60.028 54.545 7.63 7.63 0.00 3.66
713 757 3.181479 GCTGGTTTGATGTCATGCATGAT 60.181 43.478 30.89 17.33 39.30 2.45
731 775 0.253044 TAGGGTGCTTTAGCTGCTGG 59.747 55.000 13.43 3.65 42.66 4.85
732 776 2.113860 TTAGGGTGCTTTAGCTGCTG 57.886 50.000 13.43 0.00 42.66 4.41
752 796 6.260377 GTTGACGTTTTAGGTGCTACTTTTT 58.740 36.000 0.00 0.00 0.00 1.94
753 797 5.502869 CGTTGACGTTTTAGGTGCTACTTTT 60.503 40.000 0.00 0.00 34.11 2.27
754 798 4.025480 CGTTGACGTTTTAGGTGCTACTTT 60.025 41.667 0.00 0.00 34.11 2.66
755 799 3.492011 CGTTGACGTTTTAGGTGCTACTT 59.508 43.478 0.00 0.00 34.11 2.24
756 800 3.054878 CGTTGACGTTTTAGGTGCTACT 58.945 45.455 0.00 0.00 34.11 2.57
757 801 3.429061 CGTTGACGTTTTAGGTGCTAC 57.571 47.619 0.00 0.00 34.11 3.58
780 824 9.456147 AGATACTGGTGTGTATAGACTATGATC 57.544 37.037 5.17 0.00 33.74 2.92
781 825 9.237187 CAGATACTGGTGTGTATAGACTATGAT 57.763 37.037 5.17 0.00 33.74 2.45
782 826 7.665974 CCAGATACTGGTGTGTATAGACTATGA 59.334 40.741 5.17 0.00 45.82 2.15
812 910 1.224315 CCCACCATCCGATCTGCAA 59.776 57.895 0.00 0.00 0.00 4.08
813 911 1.995066 ACCCACCATCCGATCTGCA 60.995 57.895 0.00 0.00 0.00 4.41
901 1008 2.031012 TGCTCAGTGGGAAGCGTG 59.969 61.111 0.00 0.00 0.00 5.34
902 1009 2.164865 CTCTGCTCAGTGGGAAGCGT 62.165 60.000 0.00 0.00 0.00 5.07
982 1097 0.545171 ATGGTGGTGATCAGGAGCTG 59.455 55.000 0.00 0.00 0.00 4.24
1284 1404 2.345991 CCGTCGAAGGCCTTCCAA 59.654 61.111 34.54 22.59 36.27 3.53
1362 1482 4.408821 TCGGCCATGACCCAGTGC 62.409 66.667 2.24 0.00 0.00 4.40
1374 1494 4.329545 TGGTGGAAGCAGTCGGCC 62.330 66.667 0.00 0.00 46.50 6.13
1441 1562 3.788333 ATTAATGAGCAGTGCGCAAAT 57.212 38.095 25.44 17.70 42.18 2.32
1442 1563 3.500982 GAATTAATGAGCAGTGCGCAAA 58.499 40.909 25.44 16.20 42.18 3.68
1443 1564 2.159393 GGAATTAATGAGCAGTGCGCAA 60.159 45.455 25.44 9.93 42.18 4.85
1496 1662 1.466856 GCACCTGATTGATGGAGCAA 58.533 50.000 0.00 0.00 39.24 3.91
1635 1804 1.210931 CGCCTTGGTCGTCGTAGAA 59.789 57.895 0.00 0.00 39.69 2.10
1637 1806 2.879462 GCGCCTTGGTCGTCGTAG 60.879 66.667 0.00 0.00 0.00 3.51
1705 1874 2.682136 TCCGAATGACCCCGAGCA 60.682 61.111 0.00 0.00 0.00 4.26
1718 1887 4.056125 CACTCCACGCTGCTCCGA 62.056 66.667 0.00 0.00 0.00 4.55
1781 1950 4.698625 AGGCCGAGGGGAACGACT 62.699 66.667 0.00 0.00 34.06 4.18
1844 2013 0.457443 TCGCGTGCTCTGATGATTCT 59.543 50.000 5.77 0.00 0.00 2.40
1982 2151 1.605058 GAGCCCAGAGGAAGCGTGTA 61.605 60.000 0.00 0.00 33.47 2.90
2039 2208 3.134127 GGTGGAAGCATGTCGGCC 61.134 66.667 0.00 0.00 0.00 6.13
2141 2321 4.308458 TGCGTCAGGAACCCACCG 62.308 66.667 0.00 0.00 34.73 4.94
2144 2324 2.425592 CAGTGCGTCAGGAACCCA 59.574 61.111 0.00 0.00 0.00 4.51
2278 2458 3.068691 CCTCCTTCCTCGCCACGA 61.069 66.667 0.00 0.00 0.00 4.35
2279 2459 3.068691 TCCTCCTTCCTCGCCACG 61.069 66.667 0.00 0.00 0.00 4.94
2384 2564 2.124983 TCCTGCATCTTCGCTGCC 60.125 61.111 0.00 0.00 38.89 4.85
2496 3810 1.941999 GAAGTAGCGGCCGTAGTGGT 61.942 60.000 28.70 8.12 41.21 4.16
2538 3941 5.730550 AGCATGCATGAAAGAATCAAACAT 58.269 33.333 30.64 0.00 42.54 2.71
2641 5931 7.206981 TCTTTTCTACAATTCTGAGCCAAAG 57.793 36.000 0.00 0.00 0.00 2.77
2645 5936 7.859875 GCAATATCTTTTCTACAATTCTGAGCC 59.140 37.037 0.00 0.00 0.00 4.70
2663 5954 7.144661 CAGTCGACTGAGATTTAGCAATATCT 58.855 38.462 36.73 0.00 46.59 1.98
2697 6009 6.710295 CACCGATTTTCACATAAGATCCCATA 59.290 38.462 0.00 0.00 0.00 2.74
2700 6012 5.123227 TCACCGATTTTCACATAAGATCCC 58.877 41.667 0.00 0.00 0.00 3.85
2745 6064 6.644592 GTGGCATAACATGTAAGAAGCAAAAA 59.355 34.615 0.00 0.00 0.00 1.94
2746 6065 6.015519 AGTGGCATAACATGTAAGAAGCAAAA 60.016 34.615 0.00 0.00 0.00 2.44
2747 6066 5.476599 AGTGGCATAACATGTAAGAAGCAAA 59.523 36.000 0.00 0.00 0.00 3.68
2748 6067 5.009631 AGTGGCATAACATGTAAGAAGCAA 58.990 37.500 0.00 0.00 0.00 3.91
2749 6068 4.588899 AGTGGCATAACATGTAAGAAGCA 58.411 39.130 0.00 0.00 0.00 3.91
2750 6069 5.123820 TCAAGTGGCATAACATGTAAGAAGC 59.876 40.000 0.00 0.00 0.00 3.86
2751 6070 6.372659 AGTCAAGTGGCATAACATGTAAGAAG 59.627 38.462 0.00 0.00 0.00 2.85
2794 6113 2.880963 AGCTAAGCCTCAGTCGATTC 57.119 50.000 0.00 0.00 0.00 2.52
2795 6114 4.218852 GGTATAGCTAAGCCTCAGTCGATT 59.781 45.833 0.00 0.00 0.00 3.34
2796 6115 3.759618 GGTATAGCTAAGCCTCAGTCGAT 59.240 47.826 0.00 0.00 0.00 3.59
2806 6125 6.651225 CCATTTCTACAAGGGTATAGCTAAGC 59.349 42.308 0.00 0.00 0.00 3.09
2813 6132 4.048600 TGGGCCATTTCTACAAGGGTATA 58.951 43.478 0.00 0.00 0.00 1.47
3010 6362 6.108687 GCCTATGTGCATTATAGTCATGCTA 58.891 40.000 15.56 0.00 46.22 3.49
3080 6434 5.900425 TGCATGTTGTTGTTAGTTTCACAT 58.100 33.333 0.00 0.00 0.00 3.21
3093 6460 3.560896 GGTTGATTTTGCTGCATGTTGTT 59.439 39.130 1.84 0.00 0.00 2.83
3202 6569 3.338250 TCCATGGGTGGGTCTGGC 61.338 66.667 13.02 0.00 46.06 4.85
3282 6649 4.841246 AGTGTCTCCATATCATCCCCTTAC 59.159 45.833 0.00 0.00 0.00 2.34
3339 6706 3.100671 AGCTCCGGAGTGAAAACTCTAT 58.899 45.455 31.43 2.09 36.97 1.98
3408 6775 7.094805 CCTTCTTTATTGAAAATGGAGACGACA 60.095 37.037 0.00 0.00 0.00 4.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.