Multiple sequence alignment - TraesCS5D01G476400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G476400 chr5D 100.000 3374 0 0 1 3374 515413352 515409979 0.000000e+00 6231.0
1 TraesCS5D01G476400 chr5D 82.674 860 137 8 1496 2344 515568273 515567415 0.000000e+00 752.0
2 TraesCS5D01G476400 chr5D 82.106 883 146 8 1496 2367 551243502 551242621 0.000000e+00 745.0
3 TraesCS5D01G476400 chr5D 98.235 340 6 0 2815 3154 513577073 513576734 2.240000e-166 595.0
4 TraesCS5D01G476400 chr5D 97.361 341 9 0 2814 3154 393679320 393679660 6.280000e-162 580.0
5 TraesCS5D01G476400 chr5D 86.111 432 47 10 986 1405 515424997 515424567 1.430000e-123 453.0
6 TraesCS5D01G476400 chr5D 85.388 438 43 5 986 1405 515466254 515465820 5.170000e-118 435.0
7 TraesCS5D01G476400 chr5A 92.606 1961 109 19 704 2632 643627646 643625690 0.000000e+00 2785.0
8 TraesCS5D01G476400 chr5A 83.506 1449 203 18 950 2366 643578547 643577103 0.000000e+00 1319.0
9 TraesCS5D01G476400 chr5A 91.099 719 31 16 1 704 643628484 643627784 0.000000e+00 942.0
10 TraesCS5D01G476400 chr5A 83.845 879 132 8 1496 2366 643453233 643452357 0.000000e+00 828.0
11 TraesCS5D01G476400 chr5A 83.353 841 131 5 1536 2367 643734411 643733571 0.000000e+00 769.0
12 TraesCS5D01G476400 chr5A 82.488 868 135 11 1496 2350 643854910 643854047 0.000000e+00 745.0
13 TraesCS5D01G476400 chr5A 86.343 432 46 4 986 1405 643735077 643734647 3.070000e-125 459.0
14 TraesCS5D01G476400 chr5A 86.417 427 45 3 991 1405 643453882 643453457 3.970000e-124 455.0
15 TraesCS5D01G476400 chr5A 85.488 441 48 7 980 1405 643855547 643855108 2.390000e-121 446.0
16 TraesCS5D01G476400 chr5A 86.500 400 41 7 2775 3172 643625691 643625303 8.650000e-116 427.0
17 TraesCS5D01G476400 chr5B 88.874 2220 138 53 707 2856 648146138 648143958 0.000000e+00 2630.0
18 TraesCS5D01G476400 chr5B 84.490 1412 181 20 978 2358 648135996 648134592 0.000000e+00 1360.0
19 TraesCS5D01G476400 chr5B 84.151 877 127 8 1496 2361 648180255 648179380 0.000000e+00 839.0
20 TraesCS5D01G476400 chr5B 82.528 973 146 18 1403 2355 648260039 648259071 0.000000e+00 833.0
21 TraesCS5D01G476400 chr5B 84.108 818 117 6 1549 2366 647993860 647993056 0.000000e+00 778.0
22 TraesCS5D01G476400 chr5B 86.528 579 45 13 139 704 648146879 648146321 1.040000e-169 606.0
23 TraesCS5D01G476400 chr5B 86.395 441 45 3 980 1405 648260591 648260151 5.100000e-128 468.0
24 TraesCS5D01G476400 chr5B 86.574 432 46 7 986 1405 647994572 647994141 1.830000e-127 466.0
25 TraesCS5D01G476400 chr5B 86.343 432 46 10 986 1405 648180884 648180454 3.070000e-125 459.0
26 TraesCS5D01G476400 chr5B 84.248 419 51 2 999 1405 648001549 648001134 8.770000e-106 394.0
27 TraesCS5D01G476400 chr5B 95.425 153 6 1 1 153 648161694 648161543 3.360000e-60 243.0
28 TraesCS5D01G476400 chr1D 98.827 341 4 0 2814 3154 45886262 45886602 2.880000e-170 608.0
29 TraesCS5D01G476400 chr1D 97.654 341 8 0 2814 3154 481233302 481232962 1.350000e-163 586.0
30 TraesCS5D01G476400 chr1D 97.361 341 8 1 2814 3154 5239351 5239012 2.260000e-161 579.0
31 TraesCS5D01G476400 chr4D 98.240 341 6 0 2814 3154 495759269 495759609 6.230000e-167 597.0
32 TraesCS5D01G476400 chr7D 98.240 341 5 1 2814 3154 603069434 603069095 2.240000e-166 595.0
33 TraesCS5D01G476400 chr2D 97.345 339 9 0 2814 3152 4963262 4962924 8.120000e-161 577.0
34 TraesCS5D01G476400 chr1B 85.779 443 50 10 994 1425 136921838 136922278 1.100000e-124 457.0
35 TraesCS5D01G476400 chr7B 81.298 262 36 6 215 465 726159744 726159485 2.050000e-47 200.0
36 TraesCS5D01G476400 chr7B 76.190 294 48 14 184 465 41041419 41041702 5.870000e-28 135.0
37 TraesCS5D01G476400 chr7A 85.714 84 12 0 500 583 195518780 195518863 4.640000e-14 89.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G476400 chr5D 515409979 515413352 3373 True 6231.000000 6231 100.000000 1 3374 1 chr5D.!!$R2 3373
1 TraesCS5D01G476400 chr5D 515567415 515568273 858 True 752.000000 752 82.674000 1496 2344 1 chr5D.!!$R5 848
2 TraesCS5D01G476400 chr5D 551242621 551243502 881 True 745.000000 745 82.106000 1496 2367 1 chr5D.!!$R6 871
3 TraesCS5D01G476400 chr5A 643625303 643628484 3181 True 1384.666667 2785 90.068333 1 3172 3 chr5A.!!$R3 3171
4 TraesCS5D01G476400 chr5A 643577103 643578547 1444 True 1319.000000 1319 83.506000 950 2366 1 chr5A.!!$R1 1416
5 TraesCS5D01G476400 chr5A 643452357 643453882 1525 True 641.500000 828 85.131000 991 2366 2 chr5A.!!$R2 1375
6 TraesCS5D01G476400 chr5A 643733571 643735077 1506 True 614.000000 769 84.848000 986 2367 2 chr5A.!!$R4 1381
7 TraesCS5D01G476400 chr5A 643854047 643855547 1500 True 595.500000 745 83.988000 980 2350 2 chr5A.!!$R5 1370
8 TraesCS5D01G476400 chr5B 648143958 648146879 2921 True 1618.000000 2630 87.701000 139 2856 2 chr5B.!!$R5 2717
9 TraesCS5D01G476400 chr5B 648134592 648135996 1404 True 1360.000000 1360 84.490000 978 2358 1 chr5B.!!$R2 1380
10 TraesCS5D01G476400 chr5B 648259071 648260591 1520 True 650.500000 833 84.461500 980 2355 2 chr5B.!!$R7 1375
11 TraesCS5D01G476400 chr5B 648179380 648180884 1504 True 649.000000 839 85.247000 986 2361 2 chr5B.!!$R6 1375
12 TraesCS5D01G476400 chr5B 647993056 647994572 1516 True 622.000000 778 85.341000 986 2366 2 chr5B.!!$R4 1380

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
939 1162 0.81401 ACGAACAGAGCACCACCAAC 60.814 55.0 0.0 0.0 0.0 3.77 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2904 3439 0.31716 TGCTGTAACTCCTCACACGG 59.683 55.0 0.0 0.0 0.0 4.94 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 2.418197 CGGTATGTGACGACAAGGGAAT 60.418 50.000 0.00 0.00 35.11 3.01
43 44 1.221021 GGGAATCCACCACTCGACC 59.779 63.158 0.09 0.00 0.00 4.79
53 54 1.202722 ACCACTCGACCGTTCCAAAAT 60.203 47.619 0.00 0.00 0.00 1.82
83 84 1.972588 AGGGTTTCCATGCTAGGAGT 58.027 50.000 0.00 0.00 39.25 3.85
131 132 5.834742 TCCTAGGTATGTCTATTTACGCCAA 59.165 40.000 9.08 0.00 0.00 4.52
405 412 7.939784 ATTCCTACAAATCAAAGGGTTCTAC 57.060 36.000 0.00 0.00 0.00 2.59
410 417 7.611855 CCTACAAATCAAAGGGTTCTACAGAAT 59.388 37.037 0.00 0.00 36.33 2.40
654 677 6.980593 TGATTTTTGTGTGGTTCCAATCTAG 58.019 36.000 0.00 0.00 0.00 2.43
655 678 6.549364 TGATTTTTGTGTGGTTCCAATCTAGT 59.451 34.615 0.00 0.00 0.00 2.57
656 679 7.721842 TGATTTTTGTGTGGTTCCAATCTAGTA 59.278 33.333 0.00 0.00 0.00 1.82
721 925 2.485814 AGTTAACACCTCGTAGTCGACC 59.514 50.000 13.01 0.00 41.35 4.79
728 932 2.298163 ACCTCGTAGTCGACCAAAACAT 59.702 45.455 13.01 0.00 41.35 2.71
899 1120 1.361668 CTCATTTCGCCCAGTCCACG 61.362 60.000 0.00 0.00 0.00 4.94
939 1162 0.814010 ACGAACAGAGCACCACCAAC 60.814 55.000 0.00 0.00 0.00 3.77
1519 1972 0.611714 TTACGAACAAGAGGGGAGGC 59.388 55.000 0.00 0.00 0.00 4.70
1531 1984 0.255033 GGGGAGGCAACCGATTTACT 59.745 55.000 0.00 0.00 37.17 2.24
1651 2110 3.296709 GAGTCTTTCCCGCTGGCGA 62.297 63.158 16.79 0.00 42.83 5.54
1894 2359 1.905215 TCCTCTGGGCTCTCAGAAAAG 59.095 52.381 0.71 0.00 42.46 2.27
1900 2365 2.938354 GCTCTCAGAAAAGCCAGCA 58.062 52.632 0.00 0.00 32.22 4.41
1935 2415 2.494918 GACACCGACATCCTCCCG 59.505 66.667 0.00 0.00 0.00 5.14
2372 2860 3.945436 CGCAGGTGCAACGAACTA 58.055 55.556 0.00 0.00 42.21 2.24
2376 2864 1.135689 GCAGGTGCAACGAACTAATGG 60.136 52.381 0.00 0.00 41.59 3.16
2383 2871 4.447389 GTGCAACGAACTAATGGCAATTTT 59.553 37.500 0.00 0.00 32.50 1.82
2448 2936 5.988287 ACTTTGGAAACCACACATTCAAAT 58.012 33.333 0.00 0.00 30.78 2.32
2462 2950 7.973388 CACACATTCAAATAATTAATCGGTGGT 59.027 33.333 0.00 0.00 0.00 4.16
2473 2961 1.003839 TCGGTGGTGCACTGATTCC 60.004 57.895 17.98 10.80 43.73 3.01
2494 2983 4.879545 TCCAGTTCTTTACAGGAAACACAC 59.120 41.667 0.00 0.00 39.27 3.82
2571 3060 1.895131 CTGGGAAAACAACCATGGGAG 59.105 52.381 18.09 10.51 35.93 4.30
2580 3069 0.179004 AACCATGGGAGCACACGAAA 60.179 50.000 18.09 0.00 0.00 3.46
2595 3084 4.154195 CACACGAAAGTTTAGGAGGGATTG 59.846 45.833 0.67 0.00 46.40 2.67
2598 3087 3.617263 CGAAAGTTTAGGAGGGATTGTCG 59.383 47.826 0.00 0.00 0.00 4.35
2608 3097 3.509967 GGAGGGATTGTCGGTTTCAAAAT 59.490 43.478 0.00 0.00 0.00 1.82
2614 3103 5.344933 GGATTGTCGGTTTCAAAATAACAGC 59.655 40.000 0.00 0.00 0.00 4.40
2621 3110 5.627780 CGGTTTCAAAATAACAGCAAGGTAC 59.372 40.000 0.00 0.00 0.00 3.34
2637 3129 3.633418 AGGTACAGATAGGTGTGACTCC 58.367 50.000 0.00 0.00 31.46 3.85
2638 3130 3.269906 AGGTACAGATAGGTGTGACTCCT 59.730 47.826 11.32 11.32 38.91 3.69
2639 3131 3.381908 GGTACAGATAGGTGTGACTCCTG 59.618 52.174 15.95 3.07 36.60 3.86
2652 3144 6.016276 GGTGTGACTCCTGTGAAATTAACAAT 60.016 38.462 0.00 0.00 0.00 2.71
2673 3167 9.427821 AACAATTTTATAGAGAGAGCTAGAGGA 57.572 33.333 0.00 0.00 0.00 3.71
2674 3168 9.077885 ACAATTTTATAGAGAGAGCTAGAGGAG 57.922 37.037 0.00 0.00 0.00 3.69
2707 3201 6.036844 CCATCGATTCATACTGCCAGATAATG 59.963 42.308 0.00 0.00 0.00 1.90
2708 3202 4.931601 TCGATTCATACTGCCAGATAATGC 59.068 41.667 0.00 0.00 0.00 3.56
2709 3203 4.934001 CGATTCATACTGCCAGATAATGCT 59.066 41.667 0.00 0.00 0.00 3.79
2730 3256 4.338964 GCTCTAACAGGTAGGTTCTAGGTC 59.661 50.000 0.00 0.00 32.29 3.85
2740 3266 3.944087 AGGTTCTAGGTCTTGACATTGC 58.056 45.455 3.08 0.00 0.00 3.56
2742 3268 3.935828 GGTTCTAGGTCTTGACATTGCTC 59.064 47.826 3.08 0.00 0.00 4.26
2745 3271 5.584253 TCTAGGTCTTGACATTGCTCTAC 57.416 43.478 3.08 0.00 0.00 2.59
2747 3273 4.623932 AGGTCTTGACATTGCTCTACAA 57.376 40.909 3.08 0.00 44.01 2.41
2762 3288 3.933332 CTCTACAAGCTTCGGGGTAAAAG 59.067 47.826 0.00 0.00 0.00 2.27
2763 3289 2.651382 ACAAGCTTCGGGGTAAAAGT 57.349 45.000 0.00 0.00 0.00 2.66
2764 3290 2.501261 ACAAGCTTCGGGGTAAAAGTC 58.499 47.619 0.00 0.00 0.00 3.01
2766 3292 1.359168 AGCTTCGGGGTAAAAGTCCT 58.641 50.000 0.00 0.00 0.00 3.85
2767 3293 2.543635 AGCTTCGGGGTAAAAGTCCTA 58.456 47.619 0.00 0.00 0.00 2.94
2768 3294 2.235650 AGCTTCGGGGTAAAAGTCCTAC 59.764 50.000 0.00 0.00 0.00 3.18
2769 3295 2.884827 CTTCGGGGTAAAAGTCCTACG 58.115 52.381 0.00 0.00 0.00 3.51
2809 3337 0.534652 GGCCATCTGAGACATCCTGC 60.535 60.000 0.00 0.00 0.00 4.85
2878 3413 3.485346 GACCAAAGGGCCGGTGACA 62.485 63.158 6.30 0.00 37.90 3.58
2879 3414 2.203422 CCAAAGGGCCGGTGACAA 60.203 61.111 1.90 0.00 0.00 3.18
2880 3415 1.830408 CCAAAGGGCCGGTGACAAA 60.830 57.895 1.90 0.00 0.00 2.83
2881 3416 1.362355 CAAAGGGCCGGTGACAAAC 59.638 57.895 1.90 0.00 0.00 2.93
2904 3439 3.747529 CACCAATCTTCCAAAAACATGGC 59.252 43.478 0.00 0.00 40.46 4.40
2906 3441 2.995258 CAATCTTCCAAAAACATGGCCG 59.005 45.455 0.00 0.00 40.46 6.13
2910 3445 0.387202 TCCAAAAACATGGCCGTGTG 59.613 50.000 30.95 17.74 40.46 3.82
2912 3447 1.602668 CCAAAAACATGGCCGTGTGAG 60.603 52.381 30.95 19.15 32.78 3.51
2913 3448 0.673437 AAAAACATGGCCGTGTGAGG 59.327 50.000 30.95 4.34 31.49 3.86
2914 3449 0.179004 AAAACATGGCCGTGTGAGGA 60.179 50.000 30.95 0.00 31.49 3.71
2915 3450 0.606401 AAACATGGCCGTGTGAGGAG 60.606 55.000 30.95 2.70 31.49 3.69
2916 3451 1.768684 AACATGGCCGTGTGAGGAGT 61.769 55.000 30.95 11.71 31.49 3.85
2917 3452 1.003355 CATGGCCGTGTGAGGAGTT 60.003 57.895 17.42 0.00 0.00 3.01
2919 3454 0.249398 ATGGCCGTGTGAGGAGTTAC 59.751 55.000 0.00 0.00 0.00 2.50
2920 3455 1.116536 TGGCCGTGTGAGGAGTTACA 61.117 55.000 0.00 0.00 0.00 2.41
2922 3457 1.014564 GCCGTGTGAGGAGTTACAGC 61.015 60.000 0.00 0.00 0.00 4.40
2923 3458 0.317160 CCGTGTGAGGAGTTACAGCA 59.683 55.000 0.00 0.00 0.00 4.41
2924 3459 1.419374 CGTGTGAGGAGTTACAGCAC 58.581 55.000 0.00 0.00 0.00 4.40
2925 3460 1.269569 CGTGTGAGGAGTTACAGCACA 60.270 52.381 0.00 0.00 37.16 4.57
2926 3461 2.801699 CGTGTGAGGAGTTACAGCACAA 60.802 50.000 0.00 0.00 40.66 3.33
2933 3468 4.833390 AGGAGTTACAGCACAACCTAATC 58.167 43.478 0.00 0.00 0.00 1.75
2993 3528 6.119144 TGAAAGAAGCACAAGTGTCTTTAC 57.881 37.500 14.81 10.82 36.59 2.01
3005 3540 6.534079 ACAAGTGTCTTTACAACAGACTACAC 59.466 38.462 0.00 0.00 41.25 2.90
3008 3543 6.096423 AGTGTCTTTACAACAGACTACACTGA 59.904 38.462 0.00 0.00 43.30 3.41
3020 3556 8.179509 ACAGACTACACTGAGTTTAGTATTGT 57.820 34.615 11.08 14.31 40.63 2.71
3028 3564 9.909644 ACACTGAGTTTAGTATTGTTACTGTAG 57.090 33.333 0.00 0.00 39.08 2.74
3029 3565 9.909644 CACTGAGTTTAGTATTGTTACTGTAGT 57.090 33.333 0.00 0.00 39.08 2.73
3048 3584 8.967918 ACTGTAGTCAGCATCTACAATAAGTTA 58.032 33.333 13.61 0.00 44.32 2.24
3052 3588 6.708054 AGTCAGCATCTACAATAAGTTATGGC 59.292 38.462 0.00 0.00 0.00 4.40
3053 3589 6.483307 GTCAGCATCTACAATAAGTTATGGCA 59.517 38.462 0.00 0.00 0.00 4.92
3057 3593 5.968676 TCTACAATAAGTTATGGCACCCT 57.031 39.130 0.00 0.00 0.00 4.34
3072 3608 2.689983 GCACCCTTCGAAATCATTCCAT 59.310 45.455 0.00 0.00 31.52 3.41
3086 3622 2.228545 TTCCATATGCAGTTGGCCAA 57.771 45.000 16.05 16.05 43.89 4.52
3089 3625 2.694628 TCCATATGCAGTTGGCCAATTC 59.305 45.455 23.66 10.00 43.89 2.17
3103 3639 4.283978 TGGCCAATTCAGTGTTGATCATTT 59.716 37.500 0.61 0.00 32.27 2.32
3104 3640 4.866486 GGCCAATTCAGTGTTGATCATTTC 59.134 41.667 0.00 0.00 32.27 2.17
3105 3641 5.337009 GGCCAATTCAGTGTTGATCATTTCT 60.337 40.000 0.00 0.00 32.27 2.52
3106 3642 6.127647 GGCCAATTCAGTGTTGATCATTTCTA 60.128 38.462 0.00 0.00 32.27 2.10
3116 3652 9.739276 AGTGTTGATCATTTCTATCTAAAACCA 57.261 29.630 0.00 0.00 0.00 3.67
3130 3666 9.893305 CTATCTAAAACCAATTTGACGAGTTTT 57.107 29.630 14.43 14.43 41.87 2.43
3141 3677 8.743099 CAATTTGACGAGTTTTAAAAAGGAGAC 58.257 33.333 1.31 0.00 0.00 3.36
3144 3680 8.897872 TTGACGAGTTTTAAAAAGGAGACTAT 57.102 30.769 1.31 0.00 42.68 2.12
3160 3696 7.199621 AGGAGACTATGTAAGCAGGGATACTG 61.200 46.154 0.00 0.00 45.33 2.74
3172 3708 4.978099 CAGGGATACTGGCTAAACATGAT 58.022 43.478 0.00 0.00 43.70 2.45
3173 3709 5.380043 CAGGGATACTGGCTAAACATGATT 58.620 41.667 0.00 0.00 43.70 2.57
3174 3710 5.829924 CAGGGATACTGGCTAAACATGATTT 59.170 40.000 0.00 0.00 43.70 2.17
3175 3711 6.322201 CAGGGATACTGGCTAAACATGATTTT 59.678 38.462 0.00 0.00 43.70 1.82
3176 3712 7.502226 CAGGGATACTGGCTAAACATGATTTTA 59.498 37.037 0.00 0.00 43.70 1.52
3177 3713 8.227507 AGGGATACTGGCTAAACATGATTTTAT 58.772 33.333 0.00 0.00 0.00 1.40
3178 3714 8.515414 GGGATACTGGCTAAACATGATTTTATC 58.485 37.037 0.00 0.79 0.00 1.75
3179 3715 8.230486 GGATACTGGCTAAACATGATTTTATCG 58.770 37.037 0.00 0.00 0.00 2.92
3180 3716 6.377327 ACTGGCTAAACATGATTTTATCGG 57.623 37.500 0.00 0.00 0.00 4.18
3181 3717 6.119536 ACTGGCTAAACATGATTTTATCGGA 58.880 36.000 0.00 0.00 0.00 4.55
3182 3718 6.260936 ACTGGCTAAACATGATTTTATCGGAG 59.739 38.462 0.00 0.00 0.00 4.63
3183 3719 5.008613 TGGCTAAACATGATTTTATCGGAGC 59.991 40.000 0.00 0.00 0.00 4.70
3184 3720 5.008613 GGCTAAACATGATTTTATCGGAGCA 59.991 40.000 0.00 0.00 0.00 4.26
3185 3721 5.909610 GCTAAACATGATTTTATCGGAGCAC 59.090 40.000 0.00 0.00 0.00 4.40
3186 3722 4.900635 AACATGATTTTATCGGAGCACC 57.099 40.909 0.00 0.00 0.00 5.01
3187 3723 3.214328 ACATGATTTTATCGGAGCACCC 58.786 45.455 0.00 0.00 0.00 4.61
3188 3724 2.341846 TGATTTTATCGGAGCACCCC 57.658 50.000 0.00 0.00 0.00 4.95
3189 3725 1.843851 TGATTTTATCGGAGCACCCCT 59.156 47.619 0.00 0.00 0.00 4.79
3190 3726 2.222027 GATTTTATCGGAGCACCCCTG 58.778 52.381 0.00 0.00 0.00 4.45
3191 3727 1.281419 TTTTATCGGAGCACCCCTGA 58.719 50.000 0.00 0.00 0.00 3.86
3192 3728 0.539986 TTTATCGGAGCACCCCTGAC 59.460 55.000 0.00 0.00 0.00 3.51
3193 3729 0.325296 TTATCGGAGCACCCCTGACT 60.325 55.000 0.00 0.00 0.00 3.41
3194 3730 1.043116 TATCGGAGCACCCCTGACTG 61.043 60.000 0.00 0.00 0.00 3.51
3195 3731 4.767255 CGGAGCACCCCTGACTGC 62.767 72.222 0.00 0.00 0.00 4.40
3196 3732 3.640407 GGAGCACCCCTGACTGCA 61.640 66.667 0.00 0.00 35.73 4.41
3197 3733 2.673523 GAGCACCCCTGACTGCAT 59.326 61.111 0.00 0.00 35.73 3.96
3198 3734 1.626356 GGAGCACCCCTGACTGCATA 61.626 60.000 0.00 0.00 35.73 3.14
3199 3735 0.179062 GAGCACCCCTGACTGCATAG 60.179 60.000 0.00 0.00 35.73 2.23
3200 3736 0.911525 AGCACCCCTGACTGCATAGT 60.912 55.000 0.00 0.00 40.66 2.12
3201 3737 0.035056 GCACCCCTGACTGCATAGTT 60.035 55.000 0.00 0.00 37.25 2.24
3202 3738 1.614317 GCACCCCTGACTGCATAGTTT 60.614 52.381 0.00 0.00 37.25 2.66
3203 3739 2.355716 GCACCCCTGACTGCATAGTTTA 60.356 50.000 0.00 0.00 37.25 2.01
3204 3740 3.872240 GCACCCCTGACTGCATAGTTTAA 60.872 47.826 0.00 0.00 37.25 1.52
3205 3741 4.526970 CACCCCTGACTGCATAGTTTAAT 58.473 43.478 0.00 0.00 37.25 1.40
3206 3742 5.680619 CACCCCTGACTGCATAGTTTAATA 58.319 41.667 0.00 0.00 37.25 0.98
3207 3743 6.119536 CACCCCTGACTGCATAGTTTAATAA 58.880 40.000 0.00 0.00 37.25 1.40
3208 3744 6.772716 CACCCCTGACTGCATAGTTTAATAAT 59.227 38.462 0.00 0.00 37.25 1.28
3209 3745 7.285401 CACCCCTGACTGCATAGTTTAATAATT 59.715 37.037 0.00 0.00 37.25 1.40
3210 3746 7.839200 ACCCCTGACTGCATAGTTTAATAATTT 59.161 33.333 0.00 0.00 37.25 1.82
3211 3747 8.352942 CCCCTGACTGCATAGTTTAATAATTTC 58.647 37.037 0.00 0.00 37.25 2.17
3212 3748 8.352942 CCCTGACTGCATAGTTTAATAATTTCC 58.647 37.037 0.00 0.00 37.25 3.13
3213 3749 8.352942 CCTGACTGCATAGTTTAATAATTTCCC 58.647 37.037 0.00 0.00 37.25 3.97
3214 3750 9.125026 CTGACTGCATAGTTTAATAATTTCCCT 57.875 33.333 0.00 0.00 37.25 4.20
3215 3751 9.120538 TGACTGCATAGTTTAATAATTTCCCTC 57.879 33.333 0.00 0.00 37.25 4.30
3216 3752 9.120538 GACTGCATAGTTTAATAATTTCCCTCA 57.879 33.333 0.00 0.00 37.25 3.86
3217 3753 8.903820 ACTGCATAGTTTAATAATTTCCCTCAC 58.096 33.333 0.00 0.00 31.66 3.51
3218 3754 8.232913 TGCATAGTTTAATAATTTCCCTCACC 57.767 34.615 0.00 0.00 0.00 4.02
3219 3755 7.836685 TGCATAGTTTAATAATTTCCCTCACCA 59.163 33.333 0.00 0.00 0.00 4.17
3220 3756 8.691797 GCATAGTTTAATAATTTCCCTCACCAA 58.308 33.333 0.00 0.00 0.00 3.67
3222 3758 9.990868 ATAGTTTAATAATTTCCCTCACCAACT 57.009 29.630 0.00 0.00 0.00 3.16
3224 3760 9.462606 AGTTTAATAATTTCCCTCACCAACTAG 57.537 33.333 0.00 0.00 0.00 2.57
3225 3761 9.457436 GTTTAATAATTTCCCTCACCAACTAGA 57.543 33.333 0.00 0.00 0.00 2.43
3227 3763 9.627123 TTAATAATTTCCCTCACCAACTAGATG 57.373 33.333 0.00 0.00 0.00 2.90
3228 3764 5.520748 AATTTCCCTCACCAACTAGATGT 57.479 39.130 0.00 0.00 0.00 3.06
3229 3765 4.553330 TTTCCCTCACCAACTAGATGTC 57.447 45.455 0.00 0.00 0.00 3.06
3230 3766 2.467880 TCCCTCACCAACTAGATGTCC 58.532 52.381 0.00 0.00 0.00 4.02
3231 3767 2.044492 TCCCTCACCAACTAGATGTCCT 59.956 50.000 0.00 0.00 0.00 3.85
3232 3768 3.271225 TCCCTCACCAACTAGATGTCCTA 59.729 47.826 0.00 0.00 0.00 2.94
3233 3769 3.385111 CCCTCACCAACTAGATGTCCTAC 59.615 52.174 0.00 0.00 0.00 3.18
3234 3770 3.385111 CCTCACCAACTAGATGTCCTACC 59.615 52.174 0.00 0.00 0.00 3.18
3235 3771 4.282496 CTCACCAACTAGATGTCCTACCT 58.718 47.826 0.00 0.00 0.00 3.08
3236 3772 5.446860 CTCACCAACTAGATGTCCTACCTA 58.553 45.833 0.00 0.00 0.00 3.08
3237 3773 5.446860 TCACCAACTAGATGTCCTACCTAG 58.553 45.833 0.00 0.00 36.76 3.02
3238 3774 4.585162 CACCAACTAGATGTCCTACCTAGG 59.415 50.000 7.41 7.41 45.02 3.02
3255 3791 3.558674 GGATCTTGTCCACCACAGG 57.441 57.895 0.00 0.00 46.96 4.00
3256 3792 0.693049 GGATCTTGTCCACCACAGGT 59.307 55.000 0.00 0.00 46.96 4.00
3257 3793 1.073923 GGATCTTGTCCACCACAGGTT 59.926 52.381 0.00 0.00 46.96 3.50
3258 3794 2.154462 GATCTTGTCCACCACAGGTTG 58.846 52.381 0.00 0.00 35.97 3.77
3259 3795 0.465460 TCTTGTCCACCACAGGTTGC 60.465 55.000 0.00 0.00 35.97 4.17
3260 3796 0.751277 CTTGTCCACCACAGGTTGCA 60.751 55.000 0.00 0.00 35.97 4.08
3261 3797 1.034838 TTGTCCACCACAGGTTGCAC 61.035 55.000 0.00 0.00 35.97 4.57
3262 3798 1.453015 GTCCACCACAGGTTGCACA 60.453 57.895 0.00 0.00 31.02 4.57
3263 3799 0.823356 GTCCACCACAGGTTGCACAT 60.823 55.000 0.00 0.00 31.02 3.21
3264 3800 0.767998 TCCACCACAGGTTGCACATA 59.232 50.000 0.00 0.00 31.02 2.29
3265 3801 1.143889 TCCACCACAGGTTGCACATAA 59.856 47.619 0.00 0.00 31.02 1.90
3266 3802 1.541147 CCACCACAGGTTGCACATAAG 59.459 52.381 0.00 0.00 31.02 1.73
3267 3803 1.068333 CACCACAGGTTGCACATAAGC 60.068 52.381 0.00 0.00 31.02 3.09
3268 3804 1.202927 ACCACAGGTTGCACATAAGCT 60.203 47.619 0.00 0.00 38.82 3.74
3269 3805 2.039746 ACCACAGGTTGCACATAAGCTA 59.960 45.455 0.00 0.00 36.69 3.32
3270 3806 2.679837 CCACAGGTTGCACATAAGCTAG 59.320 50.000 0.00 0.00 36.69 3.42
3271 3807 3.599343 CACAGGTTGCACATAAGCTAGA 58.401 45.455 0.00 0.00 36.69 2.43
3272 3808 4.194640 CACAGGTTGCACATAAGCTAGAT 58.805 43.478 0.00 0.00 36.69 1.98
3273 3809 4.637534 CACAGGTTGCACATAAGCTAGATT 59.362 41.667 0.00 0.00 36.69 2.40
3274 3810 5.124457 CACAGGTTGCACATAAGCTAGATTT 59.876 40.000 0.00 0.00 36.69 2.17
3275 3811 5.355350 ACAGGTTGCACATAAGCTAGATTTC 59.645 40.000 0.00 0.00 36.69 2.17
3276 3812 4.884164 AGGTTGCACATAAGCTAGATTTCC 59.116 41.667 0.00 0.00 36.69 3.13
3277 3813 4.884164 GGTTGCACATAAGCTAGATTTCCT 59.116 41.667 0.00 0.00 34.99 3.36
3278 3814 6.055588 GGTTGCACATAAGCTAGATTTCCTA 58.944 40.000 0.00 0.00 34.99 2.94
3279 3815 6.203723 GGTTGCACATAAGCTAGATTTCCTAG 59.796 42.308 0.00 0.00 46.05 3.02
3280 3816 5.858381 TGCACATAAGCTAGATTTCCTAGG 58.142 41.667 0.82 0.82 44.00 3.02
3288 3824 5.346181 GCTAGATTTCCTAGGTGTCTTGT 57.654 43.478 9.08 0.00 44.00 3.16
3289 3825 5.735766 GCTAGATTTCCTAGGTGTCTTGTT 58.264 41.667 9.08 0.00 44.00 2.83
3290 3826 6.875076 GCTAGATTTCCTAGGTGTCTTGTTA 58.125 40.000 9.08 0.00 44.00 2.41
3291 3827 7.501844 GCTAGATTTCCTAGGTGTCTTGTTAT 58.498 38.462 9.08 0.00 44.00 1.89
3292 3828 8.639761 GCTAGATTTCCTAGGTGTCTTGTTATA 58.360 37.037 9.08 0.00 44.00 0.98
3293 3829 9.968870 CTAGATTTCCTAGGTGTCTTGTTATAC 57.031 37.037 9.08 0.00 40.91 1.47
3294 3830 7.793036 AGATTTCCTAGGTGTCTTGTTATACC 58.207 38.462 9.08 0.00 0.00 2.73
3295 3831 5.945144 TTCCTAGGTGTCTTGTTATACCC 57.055 43.478 9.08 0.00 33.67 3.69
3296 3832 5.216665 TCCTAGGTGTCTTGTTATACCCT 57.783 43.478 9.08 0.00 33.67 4.34
3297 3833 4.960469 TCCTAGGTGTCTTGTTATACCCTG 59.040 45.833 9.08 0.00 33.67 4.45
3298 3834 4.101119 CCTAGGTGTCTTGTTATACCCTGG 59.899 50.000 0.00 0.00 33.67 4.45
3299 3835 3.527937 AGGTGTCTTGTTATACCCTGGT 58.472 45.455 0.00 0.00 33.67 4.00
3300 3836 3.914435 AGGTGTCTTGTTATACCCTGGTT 59.086 43.478 0.00 0.00 33.67 3.67
3301 3837 4.019591 AGGTGTCTTGTTATACCCTGGTTC 60.020 45.833 0.00 0.00 33.67 3.62
3302 3838 4.259356 GTGTCTTGTTATACCCTGGTTCC 58.741 47.826 0.00 0.00 0.00 3.62
3303 3839 3.264964 TGTCTTGTTATACCCTGGTTCCC 59.735 47.826 0.00 0.00 0.00 3.97
3304 3840 3.264964 GTCTTGTTATACCCTGGTTCCCA 59.735 47.826 0.00 0.00 0.00 4.37
3305 3841 3.264964 TCTTGTTATACCCTGGTTCCCAC 59.735 47.826 0.00 0.00 0.00 4.61
3306 3842 2.633692 TGTTATACCCTGGTTCCCACA 58.366 47.619 0.00 0.00 0.00 4.17
3307 3843 2.987437 TGTTATACCCTGGTTCCCACAA 59.013 45.455 0.00 0.00 0.00 3.33
3308 3844 3.398292 TGTTATACCCTGGTTCCCACAAA 59.602 43.478 0.00 0.00 0.00 2.83
3309 3845 4.140994 TGTTATACCCTGGTTCCCACAAAA 60.141 41.667 0.00 0.00 0.00 2.44
3310 3846 3.621682 ATACCCTGGTTCCCACAAAAA 57.378 42.857 0.00 0.00 0.00 1.94
3311 3847 1.788229 ACCCTGGTTCCCACAAAAAG 58.212 50.000 0.00 0.00 0.00 2.27
3312 3848 1.007842 ACCCTGGTTCCCACAAAAAGT 59.992 47.619 0.00 0.00 0.00 2.66
3331 3867 1.456296 TGACATGATCACTGGCAAGC 58.544 50.000 10.20 0.00 29.99 4.01
3332 3868 0.737219 GACATGATCACTGGCAAGCC 59.263 55.000 3.61 3.61 0.00 4.35
3333 3869 0.330604 ACATGATCACTGGCAAGCCT 59.669 50.000 12.96 0.00 36.94 4.58
3334 3870 1.561076 ACATGATCACTGGCAAGCCTA 59.439 47.619 12.96 0.00 36.94 3.93
3335 3871 2.219458 CATGATCACTGGCAAGCCTAG 58.781 52.381 12.96 10.28 36.94 3.02
3336 3872 0.543277 TGATCACTGGCAAGCCTAGG 59.457 55.000 12.96 3.67 36.94 3.02
3337 3873 0.179034 GATCACTGGCAAGCCTAGGG 60.179 60.000 11.72 9.24 36.94 3.53
3338 3874 0.621571 ATCACTGGCAAGCCTAGGGA 60.622 55.000 11.72 14.02 36.94 4.20
3339 3875 1.222936 CACTGGCAAGCCTAGGGAG 59.777 63.158 11.72 3.28 36.94 4.30
3340 3876 2.191641 CTGGCAAGCCTAGGGAGC 59.808 66.667 11.72 0.00 36.94 4.70
3341 3877 3.746949 CTGGCAAGCCTAGGGAGCG 62.747 68.421 11.72 0.00 36.94 5.03
3343 3879 4.168291 GCAAGCCTAGGGAGCGCT 62.168 66.667 11.27 11.27 32.50 5.92
3344 3880 2.107953 CAAGCCTAGGGAGCGCTC 59.892 66.667 29.38 29.38 31.26 5.03
3345 3881 2.042435 AAGCCTAGGGAGCGCTCT 60.042 61.111 34.46 20.03 31.26 4.09
3346 3882 1.109920 CAAGCCTAGGGAGCGCTCTA 61.110 60.000 34.46 20.08 31.26 2.43
3347 3883 0.825840 AAGCCTAGGGAGCGCTCTAG 60.826 60.000 34.46 27.02 43.57 2.43
3348 3884 2.926420 GCCTAGGGAGCGCTCTAGC 61.926 68.421 34.46 24.55 42.77 3.42
3349 3885 1.529478 CCTAGGGAGCGCTCTAGCA 60.529 63.158 34.46 17.29 42.77 3.49
3350 3886 1.523154 CCTAGGGAGCGCTCTAGCAG 61.523 65.000 34.46 24.13 42.77 4.24
3351 3887 0.536233 CTAGGGAGCGCTCTAGCAGA 60.536 60.000 34.46 14.50 38.32 4.26
3352 3888 0.820074 TAGGGAGCGCTCTAGCAGAC 60.820 60.000 34.46 17.20 42.21 3.51
3353 3889 2.418910 GGGAGCGCTCTAGCAGACA 61.419 63.158 34.46 0.00 42.21 3.41
3354 3890 1.513158 GGAGCGCTCTAGCAGACAA 59.487 57.895 34.46 0.00 42.21 3.18
3355 3891 0.108615 GGAGCGCTCTAGCAGACAAA 60.109 55.000 34.46 0.00 42.21 2.83
3356 3892 0.995728 GAGCGCTCTAGCAGACAAAC 59.004 55.000 29.88 0.00 42.21 2.93
3357 3893 0.734253 AGCGCTCTAGCAGACAAACG 60.734 55.000 2.64 0.00 42.21 3.60
3358 3894 0.732880 GCGCTCTAGCAGACAAACGA 60.733 55.000 0.00 0.00 42.21 3.85
3359 3895 1.698165 CGCTCTAGCAGACAAACGAA 58.302 50.000 2.44 0.00 42.21 3.85
3360 3896 2.058798 CGCTCTAGCAGACAAACGAAA 58.941 47.619 2.44 0.00 42.21 3.46
3361 3897 2.475111 CGCTCTAGCAGACAAACGAAAA 59.525 45.455 2.44 0.00 42.21 2.29
3362 3898 3.059868 CGCTCTAGCAGACAAACGAAAAA 60.060 43.478 2.44 0.00 42.21 1.94
3363 3899 4.377431 CGCTCTAGCAGACAAACGAAAAAT 60.377 41.667 2.44 0.00 42.21 1.82
3364 3900 5.163992 CGCTCTAGCAGACAAACGAAAAATA 60.164 40.000 2.44 0.00 42.21 1.40
3365 3901 6.244275 GCTCTAGCAGACAAACGAAAAATAG 58.756 40.000 0.00 0.00 41.59 1.73
3366 3902 6.673316 GCTCTAGCAGACAAACGAAAAATAGG 60.673 42.308 0.00 0.00 41.59 2.57
3367 3903 6.460781 TCTAGCAGACAAACGAAAAATAGGA 58.539 36.000 0.00 0.00 0.00 2.94
3368 3904 7.103641 TCTAGCAGACAAACGAAAAATAGGAT 58.896 34.615 0.00 0.00 0.00 3.24
3369 3905 6.183309 AGCAGACAAACGAAAAATAGGATC 57.817 37.500 0.00 0.00 0.00 3.36
3370 3906 5.940470 AGCAGACAAACGAAAAATAGGATCT 59.060 36.000 0.00 0.00 0.00 2.75
3371 3907 7.103641 AGCAGACAAACGAAAAATAGGATCTA 58.896 34.615 0.00 0.00 0.00 1.98
3372 3908 7.606456 AGCAGACAAACGAAAAATAGGATCTAA 59.394 33.333 0.00 0.00 0.00 2.10
3373 3909 8.234546 GCAGACAAACGAAAAATAGGATCTAAA 58.765 33.333 0.00 0.00 0.00 1.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 2.567497 GGAACGGTCGAGTGGTGGA 61.567 63.158 0.00 0.00 0.00 4.02
43 44 4.323336 CCTATTGCACGAAATTTTGGAACG 59.677 41.667 10.22 2.75 0.00 3.95
53 54 2.865079 TGGAAACCCTATTGCACGAAA 58.135 42.857 0.00 0.00 0.00 3.46
83 84 7.094805 GGAGAGTGTGCACAATAAAGTGAAATA 60.095 37.037 23.59 0.00 42.05 1.40
276 282 8.463930 AAAAGTCTTATGATGTGAACCAAAGA 57.536 30.769 0.00 0.00 0.00 2.52
443 456 5.414360 GCCTCTTTTGATTTGGAGGAATTC 58.586 41.667 11.44 0.00 45.79 2.17
451 464 4.280677 TGTTGTAGGCCTCTTTTGATTTGG 59.719 41.667 9.68 0.00 0.00 3.28
456 469 3.391296 ACTCTGTTGTAGGCCTCTTTTGA 59.609 43.478 9.68 0.92 0.00 2.69
596 616 4.666928 TTTACGCGAGGAATTTGGTTAC 57.333 40.909 15.93 0.00 31.12 2.50
721 925 4.700213 ACGATGTTTAGGGGAGATGTTTTG 59.300 41.667 0.00 0.00 0.00 2.44
728 932 2.133281 TCGACGATGTTTAGGGGAGA 57.867 50.000 0.00 0.00 0.00 3.71
899 1120 3.117171 CAGTGCTCTGCTCACGCC 61.117 66.667 2.32 0.00 39.31 5.68
939 1162 3.089874 TGGCCTGGAATCGGGAGG 61.090 66.667 3.32 0.00 42.08 4.30
1295 1541 4.388499 GGAACTCCGCGAAGGGCA 62.388 66.667 8.23 0.00 43.84 5.36
1347 1593 2.106938 TCGGCGATGATCCAGTGC 59.893 61.111 4.99 0.00 0.00 4.40
1519 1972 3.500982 CATGGTTGCAGTAAATCGGTTG 58.499 45.455 0.00 0.00 0.00 3.77
1531 1984 2.112928 AGACACGCCATGGTTGCA 59.887 55.556 14.67 0.00 0.00 4.08
1651 2110 1.168714 GGCTTGCCGAGAATTGTCTT 58.831 50.000 0.66 0.00 32.80 3.01
1656 2115 1.745489 GACCGGCTTGCCGAGAATT 60.745 57.895 32.16 12.58 34.88 2.17
1935 2415 3.431725 CGCTCTTGGAAACCCGGC 61.432 66.667 0.00 0.00 0.00 6.13
2224 2712 1.417288 GCCTCTCCCTCAGCCATGAT 61.417 60.000 0.00 0.00 34.12 2.45
2268 2756 1.997311 CACCTCCTGCATCCTCCCA 60.997 63.158 0.00 0.00 0.00 4.37
2270 2758 0.691078 TACCACCTCCTGCATCCTCC 60.691 60.000 0.00 0.00 0.00 4.30
2376 2864 9.364989 TGATTTATTTGGCAGTAGTAAAATTGC 57.635 29.630 0.00 0.00 35.87 3.56
2383 2871 7.549839 ACGTACTGATTTATTTGGCAGTAGTA 58.450 34.615 0.00 0.00 42.52 1.82
2398 2886 6.392354 TCTGGAACGATTTTACGTACTGATT 58.608 36.000 0.00 0.00 45.83 2.57
2399 2887 5.957798 TCTGGAACGATTTTACGTACTGAT 58.042 37.500 0.00 0.00 45.83 2.90
2400 2888 5.375417 TCTGGAACGATTTTACGTACTGA 57.625 39.130 0.00 0.00 45.83 3.41
2401 2889 6.642683 AATCTGGAACGATTTTACGTACTG 57.357 37.500 0.00 0.00 45.83 2.74
2403 2891 7.746526 AGTAATCTGGAACGATTTTACGTAC 57.253 36.000 0.00 0.00 45.83 3.67
2404 2892 8.649841 CAAAGTAATCTGGAACGATTTTACGTA 58.350 33.333 0.00 0.00 45.83 3.57
2406 2894 6.959311 CCAAAGTAATCTGGAACGATTTTACG 59.041 38.462 0.00 0.00 34.58 3.18
2448 2936 4.209307 TCAGTGCACCACCGATTAATTA 57.791 40.909 14.63 0.00 34.49 1.40
2455 2943 1.003839 GGAATCAGTGCACCACCGA 60.004 57.895 14.63 5.75 34.49 4.69
2456 2944 1.300971 CTGGAATCAGTGCACCACCG 61.301 60.000 14.63 0.00 36.30 4.94
2457 2945 2.559785 CTGGAATCAGTGCACCACC 58.440 57.895 14.63 10.46 36.30 4.61
2473 2961 5.584649 TGAGTGTGTTTCCTGTAAAGAACTG 59.415 40.000 0.00 0.00 0.00 3.16
2494 2983 5.885230 TGCATATGAAGAAACCACTTGAG 57.115 39.130 6.97 0.00 0.00 3.02
2554 3043 1.000843 GTGCTCCCATGGTTGTTTTCC 59.999 52.381 11.73 0.00 0.00 3.13
2571 3060 1.804748 CCCTCCTAAACTTTCGTGTGC 59.195 52.381 0.00 0.00 0.00 4.57
2580 3069 2.547990 ACCGACAATCCCTCCTAAACT 58.452 47.619 0.00 0.00 0.00 2.66
2595 3084 4.679654 CCTTGCTGTTATTTTGAAACCGAC 59.320 41.667 0.00 0.00 0.00 4.79
2598 3087 6.508777 TGTACCTTGCTGTTATTTTGAAACC 58.491 36.000 0.00 0.00 0.00 3.27
2608 3097 4.775780 ACACCTATCTGTACCTTGCTGTTA 59.224 41.667 0.00 0.00 0.00 2.41
2614 3103 4.142138 GGAGTCACACCTATCTGTACCTTG 60.142 50.000 0.00 0.00 0.00 3.61
2621 3110 3.092301 TCACAGGAGTCACACCTATCTG 58.908 50.000 0.00 0.00 35.84 2.90
2672 3166 8.812329 GCAGTATGAATCGATGGATATTTACTC 58.188 37.037 0.00 0.00 39.69 2.59
2673 3167 7.766278 GGCAGTATGAATCGATGGATATTTACT 59.234 37.037 0.00 0.00 39.69 2.24
2674 3168 7.549134 TGGCAGTATGAATCGATGGATATTTAC 59.451 37.037 0.00 0.00 39.69 2.01
2679 3173 4.772100 TCTGGCAGTATGAATCGATGGATA 59.228 41.667 15.27 0.00 39.69 2.59
2681 3175 2.965147 TCTGGCAGTATGAATCGATGGA 59.035 45.455 15.27 0.00 39.69 3.41
2707 3201 4.279982 ACCTAGAACCTACCTGTTAGAGC 58.720 47.826 0.00 0.00 0.00 4.09
2708 3202 5.757988 AGACCTAGAACCTACCTGTTAGAG 58.242 45.833 0.00 0.00 0.00 2.43
2709 3203 5.793034 AGACCTAGAACCTACCTGTTAGA 57.207 43.478 0.00 0.00 0.00 2.10
2740 3266 3.604875 TTTACCCCGAAGCTTGTAGAG 57.395 47.619 2.10 0.00 0.00 2.43
2742 3268 3.671716 ACTTTTACCCCGAAGCTTGTAG 58.328 45.455 2.10 0.00 0.00 2.74
2745 3271 1.810755 GGACTTTTACCCCGAAGCTTG 59.189 52.381 2.10 0.00 0.00 4.01
2747 3273 1.359168 AGGACTTTTACCCCGAAGCT 58.641 50.000 0.00 0.00 0.00 3.74
2757 3283 8.196771 TCAACTGTACTTTTCGTAGGACTTTTA 58.803 33.333 0.00 0.00 29.89 1.52
2758 3284 7.010830 GTCAACTGTACTTTTCGTAGGACTTTT 59.989 37.037 0.00 0.00 29.89 2.27
2762 3288 5.527033 AGTCAACTGTACTTTTCGTAGGAC 58.473 41.667 0.00 0.00 0.00 3.85
2763 3289 5.779529 AGTCAACTGTACTTTTCGTAGGA 57.220 39.130 0.00 0.00 0.00 2.94
2764 3290 5.176958 CCAAGTCAACTGTACTTTTCGTAGG 59.823 44.000 0.00 0.00 34.99 3.18
2766 3292 4.508861 GCCAAGTCAACTGTACTTTTCGTA 59.491 41.667 0.00 0.00 34.99 3.43
2767 3293 3.311596 GCCAAGTCAACTGTACTTTTCGT 59.688 43.478 0.00 0.00 34.99 3.85
2768 3294 3.603857 CGCCAAGTCAACTGTACTTTTCG 60.604 47.826 0.00 0.00 34.99 3.46
2769 3295 3.303791 CCGCCAAGTCAACTGTACTTTTC 60.304 47.826 0.00 0.00 34.99 2.29
2858 3393 2.983592 CACCGGCCCTTTGGTCAC 60.984 66.667 0.00 0.00 35.27 3.67
2878 3413 5.428184 TGTTTTTGGAAGATTGGTGGTTT 57.572 34.783 0.00 0.00 0.00 3.27
2879 3414 5.367302 CATGTTTTTGGAAGATTGGTGGTT 58.633 37.500 0.00 0.00 0.00 3.67
2880 3415 4.202346 CCATGTTTTTGGAAGATTGGTGGT 60.202 41.667 0.00 0.00 39.25 4.16
2881 3416 4.317488 CCATGTTTTTGGAAGATTGGTGG 58.683 43.478 0.00 0.00 39.25 4.61
2884 3419 3.337358 GGCCATGTTTTTGGAAGATTGG 58.663 45.455 0.00 0.00 39.25 3.16
2890 3425 1.115467 ACACGGCCATGTTTTTGGAA 58.885 45.000 0.00 0.00 39.25 3.53
2904 3439 0.317160 TGCTGTAACTCCTCACACGG 59.683 55.000 0.00 0.00 0.00 4.94
2906 3441 2.526304 TGTGCTGTAACTCCTCACAC 57.474 50.000 0.00 0.00 33.33 3.82
2910 3445 2.841442 AGGTTGTGCTGTAACTCCTC 57.159 50.000 0.00 0.00 0.00 3.71
2912 3447 4.631813 CAGATTAGGTTGTGCTGTAACTCC 59.368 45.833 0.00 0.00 0.00 3.85
2913 3448 5.348997 GTCAGATTAGGTTGTGCTGTAACTC 59.651 44.000 0.00 0.00 0.00 3.01
2914 3449 5.221641 TGTCAGATTAGGTTGTGCTGTAACT 60.222 40.000 0.00 0.00 0.00 2.24
2915 3450 4.994852 TGTCAGATTAGGTTGTGCTGTAAC 59.005 41.667 0.00 0.00 0.00 2.50
2916 3451 5.222079 TGTCAGATTAGGTTGTGCTGTAA 57.778 39.130 0.00 0.00 0.00 2.41
2917 3452 4.820897 CTGTCAGATTAGGTTGTGCTGTA 58.179 43.478 0.00 0.00 0.00 2.74
2919 3454 2.417933 GCTGTCAGATTAGGTTGTGCTG 59.582 50.000 3.32 0.00 0.00 4.41
2920 3455 2.304180 AGCTGTCAGATTAGGTTGTGCT 59.696 45.455 3.32 0.00 0.00 4.40
2922 3457 4.083110 CCAAAGCTGTCAGATTAGGTTGTG 60.083 45.833 3.29 0.00 35.09 3.33
2923 3458 4.074970 CCAAAGCTGTCAGATTAGGTTGT 58.925 43.478 3.29 0.00 35.09 3.32
2924 3459 4.326826 TCCAAAGCTGTCAGATTAGGTTG 58.673 43.478 3.29 0.00 35.09 3.77
2925 3460 4.566488 CCTCCAAAGCTGTCAGATTAGGTT 60.566 45.833 3.29 0.00 36.29 3.50
2926 3461 3.054802 CCTCCAAAGCTGTCAGATTAGGT 60.055 47.826 3.29 0.00 0.00 3.08
2933 3468 1.676967 GGGCCTCCAAAGCTGTCAG 60.677 63.158 0.84 0.00 0.00 3.51
2993 3528 8.916654 CAATACTAAACTCAGTGTAGTCTGTTG 58.083 37.037 11.25 11.03 37.67 3.33
3008 3543 8.582437 TGCTGACTACAGTAACAATACTAAACT 58.418 33.333 0.00 0.00 45.04 2.66
3020 3556 8.967918 ACTTATTGTAGATGCTGACTACAGTAA 58.032 33.333 19.94 19.94 46.62 2.24
3028 3564 6.483307 TGCCATAACTTATTGTAGATGCTGAC 59.517 38.462 0.00 0.00 0.00 3.51
3029 3565 6.483307 GTGCCATAACTTATTGTAGATGCTGA 59.517 38.462 0.00 0.00 0.00 4.26
3030 3566 6.293626 GGTGCCATAACTTATTGTAGATGCTG 60.294 42.308 0.00 0.00 0.00 4.41
3032 3568 5.048713 GGGTGCCATAACTTATTGTAGATGC 60.049 44.000 0.00 0.00 0.00 3.91
3048 3584 2.442236 ATGATTTCGAAGGGTGCCAT 57.558 45.000 0.00 0.00 0.00 4.40
3052 3588 5.563475 GCATATGGAATGATTTCGAAGGGTG 60.563 44.000 4.56 0.00 32.28 4.61
3053 3589 4.520492 GCATATGGAATGATTTCGAAGGGT 59.480 41.667 4.56 0.00 32.28 4.34
3057 3593 6.459985 CCAACTGCATATGGAATGATTTCGAA 60.460 38.462 11.53 0.00 39.12 3.71
3072 3608 2.492881 CACTGAATTGGCCAACTGCATA 59.507 45.455 23.27 0.00 43.89 3.14
3089 3625 9.994432 GGTTTTAGATAGAAATGATCAACACTG 57.006 33.333 0.00 0.00 0.00 3.66
3103 3639 8.842358 AACTCGTCAAATTGGTTTTAGATAGA 57.158 30.769 0.00 0.00 0.00 1.98
3104 3640 9.893305 AAAACTCGTCAAATTGGTTTTAGATAG 57.107 29.630 8.37 0.00 38.01 2.08
3113 3649 7.548967 TCCTTTTTAAAACTCGTCAAATTGGT 58.451 30.769 0.00 0.00 0.00 3.67
3116 3652 8.683615 AGTCTCCTTTTTAAAACTCGTCAAATT 58.316 29.630 0.00 0.00 0.00 1.82
3130 3666 6.442564 TCCCTGCTTACATAGTCTCCTTTTTA 59.557 38.462 0.00 0.00 0.00 1.52
3141 3677 3.580458 AGCCAGTATCCCTGCTTACATAG 59.420 47.826 0.00 0.00 40.06 2.23
3144 3680 1.879575 AGCCAGTATCCCTGCTTACA 58.120 50.000 0.00 0.00 40.06 2.41
3149 3685 2.710096 TGTTTAGCCAGTATCCCTGC 57.290 50.000 0.00 0.00 40.06 4.85
3160 3696 5.008613 TGCTCCGATAAAATCATGTTTAGCC 59.991 40.000 0.00 0.00 0.00 3.93
3169 3705 1.843851 AGGGGTGCTCCGATAAAATCA 59.156 47.619 0.00 0.00 36.01 2.57
3172 3708 1.065709 GTCAGGGGTGCTCCGATAAAA 60.066 52.381 0.00 0.00 36.01 1.52
3173 3709 0.539986 GTCAGGGGTGCTCCGATAAA 59.460 55.000 0.00 0.00 36.01 1.40
3174 3710 0.325296 AGTCAGGGGTGCTCCGATAA 60.325 55.000 0.00 0.00 36.01 1.75
3175 3711 1.043116 CAGTCAGGGGTGCTCCGATA 61.043 60.000 0.00 0.00 36.01 2.92
3176 3712 2.039624 AGTCAGGGGTGCTCCGAT 59.960 61.111 0.00 0.00 36.01 4.18
3177 3713 2.997315 CAGTCAGGGGTGCTCCGA 60.997 66.667 0.00 0.00 36.01 4.55
3178 3714 4.767255 GCAGTCAGGGGTGCTCCG 62.767 72.222 0.00 0.00 36.71 4.63
3179 3715 1.626356 TATGCAGTCAGGGGTGCTCC 61.626 60.000 0.00 0.00 40.54 4.70
3180 3716 0.179062 CTATGCAGTCAGGGGTGCTC 60.179 60.000 0.00 0.00 40.54 4.26
3181 3717 0.911525 ACTATGCAGTCAGGGGTGCT 60.912 55.000 0.00 0.00 40.54 4.40
3182 3718 0.035056 AACTATGCAGTCAGGGGTGC 60.035 55.000 0.00 0.00 40.29 5.01
3183 3719 2.496899 AAACTATGCAGTCAGGGGTG 57.503 50.000 0.00 0.00 32.29 4.61
3184 3720 4.862641 ATTAAACTATGCAGTCAGGGGT 57.137 40.909 0.00 0.00 32.29 4.95
3185 3721 7.823745 AATTATTAAACTATGCAGTCAGGGG 57.176 36.000 0.00 0.00 32.29 4.79
3186 3722 8.352942 GGAAATTATTAAACTATGCAGTCAGGG 58.647 37.037 0.00 0.00 32.29 4.45
3187 3723 8.352942 GGGAAATTATTAAACTATGCAGTCAGG 58.647 37.037 0.00 0.00 32.29 3.86
3188 3724 9.125026 AGGGAAATTATTAAACTATGCAGTCAG 57.875 33.333 0.00 0.00 32.29 3.51
3189 3725 9.120538 GAGGGAAATTATTAAACTATGCAGTCA 57.879 33.333 0.00 0.00 32.29 3.41
3190 3726 9.120538 TGAGGGAAATTATTAAACTATGCAGTC 57.879 33.333 0.00 0.00 32.29 3.51
3191 3727 8.903820 GTGAGGGAAATTATTAAACTATGCAGT 58.096 33.333 0.00 0.00 36.19 4.40
3192 3728 8.352942 GGTGAGGGAAATTATTAAACTATGCAG 58.647 37.037 0.00 0.00 0.00 4.41
3193 3729 7.836685 TGGTGAGGGAAATTATTAAACTATGCA 59.163 33.333 0.00 0.00 0.00 3.96
3194 3730 8.232913 TGGTGAGGGAAATTATTAAACTATGC 57.767 34.615 0.00 0.00 0.00 3.14
3196 3732 9.990868 AGTTGGTGAGGGAAATTATTAAACTAT 57.009 29.630 0.00 0.00 0.00 2.12
3198 3734 9.462606 CTAGTTGGTGAGGGAAATTATTAAACT 57.537 33.333 0.00 0.00 0.00 2.66
3199 3735 9.457436 TCTAGTTGGTGAGGGAAATTATTAAAC 57.543 33.333 0.00 0.00 0.00 2.01
3201 3737 9.627123 CATCTAGTTGGTGAGGGAAATTATTAA 57.373 33.333 0.00 0.00 0.00 1.40
3202 3738 8.778059 ACATCTAGTTGGTGAGGGAAATTATTA 58.222 33.333 5.80 0.00 0.00 0.98
3203 3739 7.643123 ACATCTAGTTGGTGAGGGAAATTATT 58.357 34.615 5.80 0.00 0.00 1.40
3204 3740 7.213178 ACATCTAGTTGGTGAGGGAAATTAT 57.787 36.000 5.80 0.00 0.00 1.28
3205 3741 6.352737 GGACATCTAGTTGGTGAGGGAAATTA 60.353 42.308 5.80 0.00 0.00 1.40
3206 3742 5.501156 GACATCTAGTTGGTGAGGGAAATT 58.499 41.667 5.80 0.00 0.00 1.82
3207 3743 4.080299 GGACATCTAGTTGGTGAGGGAAAT 60.080 45.833 5.80 0.00 0.00 2.17
3208 3744 3.263425 GGACATCTAGTTGGTGAGGGAAA 59.737 47.826 5.80 0.00 0.00 3.13
3209 3745 2.838202 GGACATCTAGTTGGTGAGGGAA 59.162 50.000 5.80 0.00 0.00 3.97
3210 3746 2.044492 AGGACATCTAGTTGGTGAGGGA 59.956 50.000 5.80 0.00 0.00 4.20
3211 3747 2.472029 AGGACATCTAGTTGGTGAGGG 58.528 52.381 5.80 0.00 0.00 4.30
3212 3748 3.385111 GGTAGGACATCTAGTTGGTGAGG 59.615 52.174 5.80 0.00 0.00 3.86
3213 3749 4.282496 AGGTAGGACATCTAGTTGGTGAG 58.718 47.826 5.80 0.00 0.00 3.51
3214 3750 4.332683 AGGTAGGACATCTAGTTGGTGA 57.667 45.455 5.80 0.00 0.00 4.02
3215 3751 4.585162 CCTAGGTAGGACATCTAGTTGGTG 59.415 50.000 0.00 0.00 46.63 4.17
3216 3752 4.805744 CCTAGGTAGGACATCTAGTTGGT 58.194 47.826 0.00 0.00 46.63 3.67
3238 3774 2.154462 CAACCTGTGGTGGACAAGATC 58.846 52.381 0.00 0.00 35.34 2.75
3239 3775 1.819305 GCAACCTGTGGTGGACAAGAT 60.819 52.381 0.00 0.00 35.34 2.40
3240 3776 0.465460 GCAACCTGTGGTGGACAAGA 60.465 55.000 0.00 0.00 35.34 3.02
3241 3777 0.751277 TGCAACCTGTGGTGGACAAG 60.751 55.000 0.00 0.00 35.34 3.16
3242 3778 1.034838 GTGCAACCTGTGGTGGACAA 61.035 55.000 0.00 0.00 35.34 3.18
3243 3779 1.453015 GTGCAACCTGTGGTGGACA 60.453 57.895 0.00 0.00 35.34 4.02
3244 3780 0.823356 ATGTGCAACCTGTGGTGGAC 60.823 55.000 0.00 0.00 35.34 4.02
3245 3781 0.767998 TATGTGCAACCTGTGGTGGA 59.232 50.000 0.00 0.00 35.34 4.02
3246 3782 1.541147 CTTATGTGCAACCTGTGGTGG 59.459 52.381 0.00 0.00 35.34 4.61
3247 3783 1.068333 GCTTATGTGCAACCTGTGGTG 60.068 52.381 0.00 0.00 35.34 4.17
3248 3784 1.202927 AGCTTATGTGCAACCTGTGGT 60.203 47.619 0.00 0.00 37.65 4.16
3249 3785 1.538047 AGCTTATGTGCAACCTGTGG 58.462 50.000 0.00 0.00 34.36 4.17
3250 3786 3.599343 TCTAGCTTATGTGCAACCTGTG 58.401 45.455 0.00 0.00 34.36 3.66
3251 3787 3.981071 TCTAGCTTATGTGCAACCTGT 57.019 42.857 0.00 0.00 34.36 4.00
3252 3788 5.220931 GGAAATCTAGCTTATGTGCAACCTG 60.221 44.000 0.00 0.00 34.36 4.00
3253 3789 4.884164 GGAAATCTAGCTTATGTGCAACCT 59.116 41.667 0.00 0.00 34.36 3.50
3254 3790 4.884164 AGGAAATCTAGCTTATGTGCAACC 59.116 41.667 0.00 0.00 34.36 3.77
3255 3791 6.203723 CCTAGGAAATCTAGCTTATGTGCAAC 59.796 42.308 1.05 0.00 43.14 4.17
3256 3792 6.126768 ACCTAGGAAATCTAGCTTATGTGCAA 60.127 38.462 17.98 0.00 43.14 4.08
3257 3793 5.366768 ACCTAGGAAATCTAGCTTATGTGCA 59.633 40.000 17.98 0.00 43.14 4.57
3258 3794 5.698545 CACCTAGGAAATCTAGCTTATGTGC 59.301 44.000 17.98 0.00 43.14 4.57
3259 3795 6.821388 ACACCTAGGAAATCTAGCTTATGTG 58.179 40.000 17.98 0.00 43.14 3.21
3260 3796 6.841755 AGACACCTAGGAAATCTAGCTTATGT 59.158 38.462 17.98 3.96 43.14 2.29
3261 3797 7.296628 AGACACCTAGGAAATCTAGCTTATG 57.703 40.000 17.98 0.22 43.14 1.90
3262 3798 7.345914 ACAAGACACCTAGGAAATCTAGCTTAT 59.654 37.037 17.98 0.00 43.14 1.73
3263 3799 6.668283 ACAAGACACCTAGGAAATCTAGCTTA 59.332 38.462 17.98 0.00 43.14 3.09
3264 3800 5.485708 ACAAGACACCTAGGAAATCTAGCTT 59.514 40.000 17.98 4.41 43.14 3.74
3265 3801 5.026790 ACAAGACACCTAGGAAATCTAGCT 58.973 41.667 17.98 0.00 43.14 3.32
3266 3802 5.346181 ACAAGACACCTAGGAAATCTAGC 57.654 43.478 17.98 0.00 43.14 3.42
3267 3803 9.968870 GTATAACAAGACACCTAGGAAATCTAG 57.031 37.037 17.98 2.05 43.89 2.43
3268 3804 8.921205 GGTATAACAAGACACCTAGGAAATCTA 58.079 37.037 17.98 0.49 0.00 1.98
3269 3805 7.147532 GGGTATAACAAGACACCTAGGAAATCT 60.148 40.741 17.98 11.82 0.00 2.40
3270 3806 6.990939 GGGTATAACAAGACACCTAGGAAATC 59.009 42.308 17.98 9.59 0.00 2.17
3271 3807 6.677076 AGGGTATAACAAGACACCTAGGAAAT 59.323 38.462 17.98 0.00 0.00 2.17
3272 3808 6.027482 AGGGTATAACAAGACACCTAGGAAA 58.973 40.000 17.98 0.00 0.00 3.13
3273 3809 5.424252 CAGGGTATAACAAGACACCTAGGAA 59.576 44.000 17.98 0.00 0.00 3.36
3274 3810 4.960469 CAGGGTATAACAAGACACCTAGGA 59.040 45.833 17.98 0.00 0.00 2.94
3275 3811 4.101119 CCAGGGTATAACAAGACACCTAGG 59.899 50.000 7.41 7.41 0.00 3.02
3276 3812 4.715297 ACCAGGGTATAACAAGACACCTAG 59.285 45.833 0.00 0.00 0.00 3.02
3277 3813 4.691238 ACCAGGGTATAACAAGACACCTA 58.309 43.478 0.00 0.00 0.00 3.08
3278 3814 3.527937 ACCAGGGTATAACAAGACACCT 58.472 45.455 0.00 0.00 0.00 4.00
3279 3815 3.994931 ACCAGGGTATAACAAGACACC 57.005 47.619 0.00 0.00 0.00 4.16
3280 3816 4.259356 GGAACCAGGGTATAACAAGACAC 58.741 47.826 0.00 0.00 0.00 3.67
3281 3817 4.563140 GGAACCAGGGTATAACAAGACA 57.437 45.455 0.00 0.00 0.00 3.41
3298 3834 4.647424 TCATGTCACTTTTTGTGGGAAC 57.353 40.909 0.00 0.00 46.20 3.62
3299 3835 4.892345 TGATCATGTCACTTTTTGTGGGAA 59.108 37.500 0.00 0.00 46.20 3.97
3300 3836 4.468713 TGATCATGTCACTTTTTGTGGGA 58.531 39.130 0.00 0.00 46.20 4.37
3301 3837 4.852134 TGATCATGTCACTTTTTGTGGG 57.148 40.909 0.00 0.00 46.20 4.61
3312 3848 1.456296 GCTTGCCAGTGATCATGTCA 58.544 50.000 0.00 0.00 0.00 3.58
3313 3849 0.737219 GGCTTGCCAGTGATCATGTC 59.263 55.000 6.79 0.00 0.00 3.06
3314 3850 0.330604 AGGCTTGCCAGTGATCATGT 59.669 50.000 14.54 0.00 0.00 3.21
3315 3851 2.219458 CTAGGCTTGCCAGTGATCATG 58.781 52.381 14.54 0.00 0.00 3.07
3316 3852 1.142465 CCTAGGCTTGCCAGTGATCAT 59.858 52.381 14.54 0.00 0.00 2.45
3317 3853 0.543277 CCTAGGCTTGCCAGTGATCA 59.457 55.000 14.54 0.00 0.00 2.92
3318 3854 0.179034 CCCTAGGCTTGCCAGTGATC 60.179 60.000 14.54 0.00 0.00 2.92
3319 3855 0.621571 TCCCTAGGCTTGCCAGTGAT 60.622 55.000 14.54 0.00 0.00 3.06
3320 3856 1.229496 TCCCTAGGCTTGCCAGTGA 60.229 57.895 14.54 3.72 0.00 3.41
3321 3857 1.222936 CTCCCTAGGCTTGCCAGTG 59.777 63.158 14.54 3.33 0.00 3.66
3322 3858 2.674220 GCTCCCTAGGCTTGCCAGT 61.674 63.158 14.54 0.00 0.00 4.00
3323 3859 2.191641 GCTCCCTAGGCTTGCCAG 59.808 66.667 14.54 8.88 0.00 4.85
3324 3860 3.785859 CGCTCCCTAGGCTTGCCA 61.786 66.667 14.54 0.00 0.00 4.92
3326 3862 4.168291 AGCGCTCCCTAGGCTTGC 62.168 66.667 2.64 6.04 31.91 4.01
3327 3863 1.109920 TAGAGCGCTCCCTAGGCTTG 61.110 60.000 32.94 0.00 37.10 4.01
3328 3864 0.825840 CTAGAGCGCTCCCTAGGCTT 60.826 60.000 32.94 14.94 37.10 4.35
3329 3865 1.228429 CTAGAGCGCTCCCTAGGCT 60.228 63.158 32.94 15.70 40.29 4.58
3330 3866 2.926420 GCTAGAGCGCTCCCTAGGC 61.926 68.421 32.94 23.64 34.45 3.93
3331 3867 1.523154 CTGCTAGAGCGCTCCCTAGG 61.523 65.000 32.94 18.64 45.83 3.02
3332 3868 0.536233 TCTGCTAGAGCGCTCCCTAG 60.536 60.000 32.94 27.13 45.83 3.02
3333 3869 0.820074 GTCTGCTAGAGCGCTCCCTA 60.820 60.000 32.94 18.89 45.83 3.53
3334 3870 2.124693 GTCTGCTAGAGCGCTCCCT 61.125 63.158 32.94 18.76 45.83 4.20
3335 3871 1.949847 TTGTCTGCTAGAGCGCTCCC 61.950 60.000 32.94 21.40 45.83 4.30
3336 3872 0.108615 TTTGTCTGCTAGAGCGCTCC 60.109 55.000 32.94 18.74 45.83 4.70
3337 3873 0.995728 GTTTGTCTGCTAGAGCGCTC 59.004 55.000 30.01 30.01 45.83 5.03
3338 3874 0.734253 CGTTTGTCTGCTAGAGCGCT 60.734 55.000 11.27 11.27 45.83 5.92
3339 3875 0.732880 TCGTTTGTCTGCTAGAGCGC 60.733 55.000 0.00 0.00 45.83 5.92
3340 3876 1.698165 TTCGTTTGTCTGCTAGAGCG 58.302 50.000 0.00 0.00 45.83 5.03
3341 3877 4.468095 TTTTTCGTTTGTCTGCTAGAGC 57.532 40.909 0.00 0.00 42.50 4.09
3342 3878 6.590292 TCCTATTTTTCGTTTGTCTGCTAGAG 59.410 38.462 0.00 0.00 0.00 2.43
3343 3879 6.460781 TCCTATTTTTCGTTTGTCTGCTAGA 58.539 36.000 0.00 0.00 0.00 2.43
3344 3880 6.721571 TCCTATTTTTCGTTTGTCTGCTAG 57.278 37.500 0.00 0.00 0.00 3.42
3345 3881 7.103641 AGATCCTATTTTTCGTTTGTCTGCTA 58.896 34.615 0.00 0.00 0.00 3.49
3346 3882 5.940470 AGATCCTATTTTTCGTTTGTCTGCT 59.060 36.000 0.00 0.00 0.00 4.24
3347 3883 6.183309 AGATCCTATTTTTCGTTTGTCTGC 57.817 37.500 0.00 0.00 0.00 4.26


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.