Multiple sequence alignment - TraesCS5D01G475700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G475700 chr5D 100.000 3425 0 0 1 3425 515105432 515108856 0.000000e+00 6325.0
1 TraesCS5D01G475700 chr5D 97.303 927 20 1 1 922 50817650 50818576 0.000000e+00 1568.0
2 TraesCS5D01G475700 chr5D 94.762 210 10 1 434 642 327614403 327614612 3.300000e-85 326.0
3 TraesCS5D01G475700 chr5D 97.183 142 2 2 300 440 327613697 327613837 4.420000e-59 239.0
4 TraesCS5D01G475700 chr5D 92.593 162 8 3 301 458 407765388 407765549 2.660000e-56 230.0
5 TraesCS5D01G475700 chr5B 91.900 1358 62 19 1234 2555 647898610 647899955 0.000000e+00 1855.0
6 TraesCS5D01G475700 chr5B 87.850 107 13 0 3219 3325 647899742 647899848 3.590000e-25 126.0
7 TraesCS5D01G475700 chr5A 88.824 1548 89 31 1087 2555 643321183 643322725 0.000000e+00 1823.0
8 TraesCS5D01G475700 chr5A 88.125 320 16 12 3122 3425 643324029 643324342 9.040000e-96 361.0
9 TraesCS5D01G475700 chr5A 90.683 161 8 4 936 1089 643320986 643321146 1.250000e-49 207.0
10 TraesCS5D01G475700 chr2D 97.157 809 18 1 1 804 85759882 85760690 0.000000e+00 1362.0
11 TraesCS5D01G475700 chr2D 95.714 210 8 1 434 642 436556846 436557055 1.520000e-88 337.0
12 TraesCS5D01G475700 chr2D 96.350 137 5 0 301 437 436556513 436556649 3.440000e-55 226.0
13 TraesCS5D01G475700 chr2D 96.748 123 4 0 800 922 85765831 85765953 4.480000e-49 206.0
14 TraesCS5D01G475700 chr2D 87.037 54 7 0 3121 3174 241696444 241696391 1.030000e-05 62.1
15 TraesCS5D01G475700 chr2D 89.362 47 5 0 87 133 216879580 216879534 3.690000e-05 60.2
16 TraesCS5D01G475700 chr2D 94.444 36 2 0 3121 3156 57195240 57195275 4.770000e-04 56.5
17 TraesCS5D01G475700 chr1D 94.762 210 10 1 434 642 48904515 48904306 3.300000e-85 326.0
18 TraesCS5D01G475700 chr1D 92.063 126 7 2 336 458 404481384 404481259 1.260000e-39 174.0
19 TraesCS5D01G475700 chr1B 93.289 149 8 2 1 149 399001281 399001135 5.750000e-53 219.0
20 TraesCS5D01G475700 chr1B 88.710 62 5 2 85 146 633778670 633778729 1.320000e-09 75.0
21 TraesCS5D01G475700 chr6B 93.151 146 9 1 1 146 642384051 642384195 2.680000e-51 213.0
22 TraesCS5D01G475700 chr6B 85.088 114 16 1 3006 3118 695012816 695012703 7.770000e-22 115.0
23 TraesCS5D01G475700 chr7D 97.333 75 2 0 301 375 422573413 422573487 9.980000e-26 128.0
24 TraesCS5D01G475700 chr7D 89.333 75 5 2 387 458 422573477 422573551 1.310000e-14 91.6
25 TraesCS5D01G475700 chr7D 85.965 57 7 1 93 149 205525501 205525446 3.690000e-05 60.2
26 TraesCS5D01G475700 chr6D 83.333 102 16 1 3007 3107 30295592 30295491 3.640000e-15 93.5
27 TraesCS5D01G475700 chr6D 90.909 44 3 1 3123 3166 102221219 102221261 1.330000e-04 58.4
28 TraesCS5D01G475700 chr4B 85.714 84 11 1 3006 3088 470305664 470305581 1.690000e-13 87.9
29 TraesCS5D01G475700 chr3B 87.719 57 6 1 93 149 580808725 580808670 7.930000e-07 65.8
30 TraesCS5D01G475700 chr3B 97.222 36 1 0 3121 3156 477881858 477881893 1.030000e-05 62.1
31 TraesCS5D01G475700 chr7B 86.538 52 7 0 3123 3174 697524449 697524500 1.330000e-04 58.4
32 TraesCS5D01G475700 chr4A 75.333 150 22 11 2052 2191 617526130 617525986 1.330000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G475700 chr5D 515105432 515108856 3424 False 6325.0 6325 100.000000 1 3425 1 chr5D.!!$F3 3424
1 TraesCS5D01G475700 chr5D 50817650 50818576 926 False 1568.0 1568 97.303000 1 922 1 chr5D.!!$F1 921
2 TraesCS5D01G475700 chr5D 327613697 327614612 915 False 282.5 326 95.972500 300 642 2 chr5D.!!$F4 342
3 TraesCS5D01G475700 chr5B 647898610 647899955 1345 False 990.5 1855 89.875000 1234 3325 2 chr5B.!!$F1 2091
4 TraesCS5D01G475700 chr5A 643320986 643324342 3356 False 797.0 1823 89.210667 936 3425 3 chr5A.!!$F1 2489
5 TraesCS5D01G475700 chr2D 85759882 85760690 808 False 1362.0 1362 97.157000 1 804 1 chr2D.!!$F2 803
6 TraesCS5D01G475700 chr2D 436556513 436557055 542 False 281.5 337 96.032000 301 642 2 chr2D.!!$F4 341

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
931 1511 0.995024 AGCACTGCCCTATTTCCTGT 59.005 50.0 0.0 0.0 0.0 4.0 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2881 3596 0.036875 CGGCCAGAGAAAGAAAGGGT 59.963 55.0 2.24 0.0 0.0 4.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
83 84 2.670148 GGCCACCCTCGGTCAGATT 61.670 63.158 0.00 0.00 31.02 2.40
308 309 4.402829 TGCTTTGTTATGAAGGGTTGCTA 58.597 39.130 0.00 0.00 0.00 3.49
547 1122 2.586079 CGAAGCGGCCGATGATGT 60.586 61.111 33.48 7.36 0.00 3.06
864 1444 7.272978 ACAGTCATGGTTATATTAAACGAGCT 58.727 34.615 0.00 0.00 0.00 4.09
922 1502 2.648059 GATGATTTGTAGCACTGCCCT 58.352 47.619 0.00 0.00 0.00 5.19
923 1503 3.433598 GGATGATTTGTAGCACTGCCCTA 60.434 47.826 0.00 0.00 0.00 3.53
924 1504 3.931907 TGATTTGTAGCACTGCCCTAT 57.068 42.857 0.00 0.00 0.00 2.57
925 1505 4.235079 TGATTTGTAGCACTGCCCTATT 57.765 40.909 0.00 0.00 0.00 1.73
926 1506 4.599041 TGATTTGTAGCACTGCCCTATTT 58.401 39.130 0.00 0.00 0.00 1.40
927 1507 4.640201 TGATTTGTAGCACTGCCCTATTTC 59.360 41.667 0.00 0.00 0.00 2.17
928 1508 2.710096 TGTAGCACTGCCCTATTTCC 57.290 50.000 0.00 0.00 0.00 3.13
929 1509 2.196595 TGTAGCACTGCCCTATTTCCT 58.803 47.619 0.00 0.00 0.00 3.36
930 1510 2.092968 TGTAGCACTGCCCTATTTCCTG 60.093 50.000 0.00 0.00 0.00 3.86
931 1511 0.995024 AGCACTGCCCTATTTCCTGT 59.005 50.000 0.00 0.00 0.00 4.00
932 1512 1.065126 AGCACTGCCCTATTTCCTGTC 60.065 52.381 0.00 0.00 0.00 3.51
933 1513 1.340017 GCACTGCCCTATTTCCTGTCA 60.340 52.381 0.00 0.00 0.00 3.58
934 1514 2.879756 GCACTGCCCTATTTCCTGTCAA 60.880 50.000 0.00 0.00 0.00 3.18
1026 1606 1.541118 TGAGCAGAACCCCATCCCA 60.541 57.895 0.00 0.00 0.00 4.37
1027 1607 1.077429 GAGCAGAACCCCATCCCAC 60.077 63.158 0.00 0.00 0.00 4.61
1028 1608 2.438434 GCAGAACCCCATCCCACG 60.438 66.667 0.00 0.00 0.00 4.94
1029 1609 2.272146 CAGAACCCCATCCCACGG 59.728 66.667 0.00 0.00 0.00 4.94
1030 1610 2.124085 AGAACCCCATCCCACGGA 59.876 61.111 0.00 0.00 35.55 4.69
1031 1611 2.271173 GAACCCCATCCCACGGAC 59.729 66.667 0.00 0.00 32.98 4.79
1032 1612 3.335729 AACCCCATCCCACGGACC 61.336 66.667 0.00 0.00 32.98 4.46
1093 1719 2.732094 CGTCGACCCAACCGTCAC 60.732 66.667 10.58 0.00 32.74 3.67
1112 1738 2.027625 GACGCAAACCAGAGGACGG 61.028 63.158 0.00 0.00 0.00 4.79
1122 1751 2.512515 GAGGACGGCTCATGGCAC 60.513 66.667 8.20 0.54 44.01 5.01
1135 1764 2.057830 TGGCACGAACCATCTGACT 58.942 52.632 0.00 0.00 33.75 3.41
1390 2034 2.573609 AAGATCTAGCCGCGCGGTTT 62.574 55.000 45.02 35.02 37.65 3.27
1420 2064 0.737219 GAAGCTGCATCATCACCACC 59.263 55.000 1.02 0.00 0.00 4.61
1446 2090 2.632544 GCCCAAACACTTACGGCCC 61.633 63.158 0.00 0.00 33.30 5.80
2090 2772 1.968017 CCAAGCTCGTGCACATGGT 60.968 57.895 18.64 11.18 42.74 3.55
2147 2829 3.507009 CGAGGGGACGGACGAGAC 61.507 72.222 0.00 0.00 0.00 3.36
2266 2948 0.171903 GTACGCCCGCTCTTACAAGA 59.828 55.000 0.00 0.00 0.00 3.02
2286 2968 4.152644 TCGAGGTACCGCGATGAT 57.847 55.556 33.01 1.39 42.72 2.45
2289 2971 1.129326 CGAGGTACCGCGATGATTTC 58.871 55.000 31.33 7.06 41.57 2.17
2388 3101 3.134804 AGCTAGTGGAATTGCGAGGTTAT 59.865 43.478 0.00 0.00 0.00 1.89
2431 3144 1.269998 AGTGTCACGTTCTAGCTGTCC 59.730 52.381 0.00 0.00 0.00 4.02
2488 3202 1.211818 GATGCAAGCTAGCTCGGACG 61.212 60.000 19.65 5.74 34.99 4.79
2510 3224 4.280494 CGTACGGGATGGAGGCCG 62.280 72.222 7.57 0.00 0.00 6.13
2516 3230 2.670148 GGGATGGAGGCCGTGAAGT 61.670 63.158 0.00 0.00 0.00 3.01
2524 3239 4.097361 GCCGTGAAGTCCTCCCCC 62.097 72.222 0.00 0.00 0.00 5.40
2546 3261 0.040067 GCGGCAAACCTGAAGAACAG 60.040 55.000 0.00 0.00 45.36 3.16
2563 3278 3.515602 ACAGGCCATGTTCTCTTTTCT 57.484 42.857 5.01 0.00 39.96 2.52
2564 3279 4.640771 ACAGGCCATGTTCTCTTTTCTA 57.359 40.909 5.01 0.00 39.96 2.10
2565 3280 5.184892 ACAGGCCATGTTCTCTTTTCTAT 57.815 39.130 5.01 0.00 39.96 1.98
2566 3281 4.946157 ACAGGCCATGTTCTCTTTTCTATG 59.054 41.667 5.01 0.00 39.96 2.23
2567 3282 5.188434 CAGGCCATGTTCTCTTTTCTATGA 58.812 41.667 5.01 0.00 0.00 2.15
2568 3283 5.826737 CAGGCCATGTTCTCTTTTCTATGAT 59.173 40.000 5.01 0.00 0.00 2.45
2569 3284 6.994496 CAGGCCATGTTCTCTTTTCTATGATA 59.006 38.462 5.01 0.00 0.00 2.15
2570 3285 6.995091 AGGCCATGTTCTCTTTTCTATGATAC 59.005 38.462 5.01 0.00 0.00 2.24
2571 3286 6.767902 GGCCATGTTCTCTTTTCTATGATACA 59.232 38.462 0.00 0.00 0.00 2.29
2572 3287 7.254932 GGCCATGTTCTCTTTTCTATGATACAC 60.255 40.741 0.00 0.00 0.00 2.90
2573 3288 7.497249 GCCATGTTCTCTTTTCTATGATACACT 59.503 37.037 0.00 0.00 0.00 3.55
2574 3289 9.388506 CCATGTTCTCTTTTCTATGATACACTT 57.611 33.333 0.00 0.00 0.00 3.16
2589 3304 8.928270 ATGATACACTTTTAACTTACTCTCGG 57.072 34.615 0.00 0.00 0.00 4.63
2590 3305 8.114331 TGATACACTTTTAACTTACTCTCGGA 57.886 34.615 0.00 0.00 0.00 4.55
2591 3306 8.579006 TGATACACTTTTAACTTACTCTCGGAA 58.421 33.333 0.00 0.00 0.00 4.30
2592 3307 9.415544 GATACACTTTTAACTTACTCTCGGAAA 57.584 33.333 0.00 0.00 0.00 3.13
2593 3308 9.768662 ATACACTTTTAACTTACTCTCGGAAAA 57.231 29.630 0.00 0.00 0.00 2.29
2594 3309 8.496707 ACACTTTTAACTTACTCTCGGAAAAA 57.503 30.769 0.00 0.00 0.00 1.94
2633 3348 9.522804 TGTTTAATTTTGTAACATGAGGTTCAC 57.477 29.630 0.00 0.00 40.96 3.18
2634 3349 9.522804 GTTTAATTTTGTAACATGAGGTTCACA 57.477 29.630 0.00 0.00 40.96 3.58
2635 3350 9.522804 TTTAATTTTGTAACATGAGGTTCACAC 57.477 29.630 0.00 0.00 40.96 3.82
2640 3355 2.727123 ACATGAGGTTCACACCACAA 57.273 45.000 0.00 0.00 45.65 3.33
2642 3357 2.296792 CATGAGGTTCACACCACAACA 58.703 47.619 0.00 0.00 45.65 3.33
2643 3358 2.033299 CATGAGGTTCACACCACAACAC 59.967 50.000 0.00 0.00 45.65 3.32
2644 3359 3.009688 ATGAGGTTCACACCACAACACC 61.010 50.000 0.00 0.00 45.65 4.16
2646 3361 1.470051 GGTTCACACCACAACACCTT 58.530 50.000 0.00 0.00 43.61 3.50
2647 3362 2.645802 GGTTCACACCACAACACCTTA 58.354 47.619 0.00 0.00 43.61 2.69
2648 3363 3.219281 GGTTCACACCACAACACCTTAT 58.781 45.455 0.00 0.00 43.61 1.73
2649 3364 3.252458 GGTTCACACCACAACACCTTATC 59.748 47.826 0.00 0.00 43.61 1.75
2650 3365 3.134574 TCACACCACAACACCTTATCC 57.865 47.619 0.00 0.00 0.00 2.59
2652 3367 2.552315 CACACCACAACACCTTATCCAC 59.448 50.000 0.00 0.00 0.00 4.02
2653 3368 1.804151 CACCACAACACCTTATCCACG 59.196 52.381 0.00 0.00 0.00 4.94
2655 3370 1.804151 CCACAACACCTTATCCACGTG 59.196 52.381 9.08 9.08 0.00 4.49
2656 3371 2.549134 CCACAACACCTTATCCACGTGA 60.549 50.000 19.30 3.36 0.00 4.35
2658 3373 1.724623 CAACACCTTATCCACGTGACG 59.275 52.381 19.30 2.24 0.00 4.35
2659 3374 0.245539 ACACCTTATCCACGTGACGG 59.754 55.000 19.30 11.57 0.00 4.79
2660 3375 0.459585 CACCTTATCCACGTGACGGG 60.460 60.000 19.30 4.60 0.00 5.28
2662 3377 1.876714 CTTATCCACGTGACGGGCG 60.877 63.158 19.30 0.00 0.00 6.13
2663 3378 3.359515 TTATCCACGTGACGGGCGG 62.360 63.158 19.30 6.99 0.00 6.13
2667 3382 4.953868 CACGTGACGGGCGGTTGA 62.954 66.667 10.90 0.00 0.00 3.18
2668 3383 4.955774 ACGTGACGGGCGGTTGAC 62.956 66.667 10.66 0.00 0.00 3.18
2670 3385 2.652530 GTGACGGGCGGTTGACTA 59.347 61.111 0.00 0.00 0.00 2.59
2671 3386 1.445582 GTGACGGGCGGTTGACTAG 60.446 63.158 0.00 0.00 0.00 2.57
2672 3387 1.904865 TGACGGGCGGTTGACTAGT 60.905 57.895 0.00 0.00 0.00 2.57
2675 3390 1.290955 CGGGCGGTTGACTAGTCAA 59.709 57.895 30.07 30.07 46.27 3.18
2688 3403 7.639113 TTGACTAGTCAAAACCAATCAAACT 57.361 32.000 31.26 0.00 45.56 2.66
2690 3405 8.740123 TGACTAGTCAAAACCAATCAAACTAA 57.260 30.769 23.24 0.00 36.53 2.24
2693 3408 6.783708 AGTCAAAACCAATCAAACTAACCA 57.216 33.333 0.00 0.00 0.00 3.67
2694 3409 6.805713 AGTCAAAACCAATCAAACTAACCAG 58.194 36.000 0.00 0.00 0.00 4.00
2695 3410 6.605594 AGTCAAAACCAATCAAACTAACCAGA 59.394 34.615 0.00 0.00 0.00 3.86
2697 3412 7.762159 GTCAAAACCAATCAAACTAACCAGAAA 59.238 33.333 0.00 0.00 0.00 2.52
2700 3415 6.783708 ACCAATCAAACTAACCAGAAAACA 57.216 33.333 0.00 0.00 0.00 2.83
2702 3417 6.379988 ACCAATCAAACTAACCAGAAAACAGT 59.620 34.615 0.00 0.00 0.00 3.55
2708 3423 7.462571 AAACTAACCAGAAAACAGTTTGAGT 57.537 32.000 0.00 0.00 37.87 3.41
2709 3424 6.436843 ACTAACCAGAAAACAGTTTGAGTG 57.563 37.500 0.00 0.00 0.00 3.51
2710 3425 6.177610 ACTAACCAGAAAACAGTTTGAGTGA 58.822 36.000 0.00 0.00 0.00 3.41
2712 3427 3.378427 ACCAGAAAACAGTTTGAGTGAGC 59.622 43.478 0.00 0.00 0.00 4.26
2714 3429 3.378112 CAGAAAACAGTTTGAGTGAGCCA 59.622 43.478 0.00 0.00 0.00 4.75
2715 3430 4.016444 AGAAAACAGTTTGAGTGAGCCAA 58.984 39.130 0.00 0.00 0.00 4.52
2716 3431 4.646492 AGAAAACAGTTTGAGTGAGCCAAT 59.354 37.500 0.00 0.00 0.00 3.16
2719 3434 3.290710 ACAGTTTGAGTGAGCCAATGTT 58.709 40.909 0.00 0.00 0.00 2.71
2720 3435 4.460263 ACAGTTTGAGTGAGCCAATGTTA 58.540 39.130 0.00 0.00 0.00 2.41
2721 3436 4.887071 ACAGTTTGAGTGAGCCAATGTTAA 59.113 37.500 0.00 0.00 0.00 2.01
2723 3438 6.127479 ACAGTTTGAGTGAGCCAATGTTAAAA 60.127 34.615 0.00 0.00 0.00 1.52
2725 3440 6.096846 AGTTTGAGTGAGCCAATGTTAAAAGT 59.903 34.615 0.00 0.00 0.00 2.66
2730 3445 5.594317 AGTGAGCCAATGTTAAAAGTTGTCT 59.406 36.000 0.00 0.00 0.00 3.41
2732 3447 5.200368 AGCCAATGTTAAAAGTTGTCTGG 57.800 39.130 0.00 0.00 0.00 3.86
2733 3448 4.649218 AGCCAATGTTAAAAGTTGTCTGGT 59.351 37.500 0.00 0.00 0.00 4.00
2734 3449 4.982295 GCCAATGTTAAAAGTTGTCTGGTC 59.018 41.667 0.00 0.00 0.00 4.02
2735 3450 5.221244 GCCAATGTTAAAAGTTGTCTGGTCT 60.221 40.000 0.00 0.00 0.00 3.85
2736 3451 6.682861 GCCAATGTTAAAAGTTGTCTGGTCTT 60.683 38.462 0.00 0.00 0.00 3.01
2738 3453 8.410141 CCAATGTTAAAAGTTGTCTGGTCTTAA 58.590 33.333 0.00 0.00 0.00 1.85
2739 3454 9.796120 CAATGTTAAAAGTTGTCTGGTCTTAAA 57.204 29.630 0.00 0.00 0.00 1.52
2742 3457 9.016438 TGTTAAAAGTTGTCTGGTCTTAAAAGT 57.984 29.630 0.00 0.00 0.00 2.66
2743 3458 9.850628 GTTAAAAGTTGTCTGGTCTTAAAAGTT 57.149 29.630 0.00 0.00 0.00 2.66
2774 3489 9.782900 ATTATATTTTATGGGAATGGTTAGGGG 57.217 33.333 0.00 0.00 0.00 4.79
2775 3490 4.976870 TTTTATGGGAATGGTTAGGGGT 57.023 40.909 0.00 0.00 0.00 4.95
2778 3493 1.295020 TGGGAATGGTTAGGGGTGAG 58.705 55.000 0.00 0.00 0.00 3.51
2779 3494 1.296002 GGGAATGGTTAGGGGTGAGT 58.704 55.000 0.00 0.00 0.00 3.41
2781 3496 1.134491 GGAATGGTTAGGGGTGAGTCG 60.134 57.143 0.00 0.00 0.00 4.18
2782 3497 1.829222 GAATGGTTAGGGGTGAGTCGA 59.171 52.381 0.00 0.00 0.00 4.20
2783 3498 1.192428 ATGGTTAGGGGTGAGTCGAC 58.808 55.000 7.70 7.70 0.00 4.20
2784 3499 0.901580 TGGTTAGGGGTGAGTCGACC 60.902 60.000 13.01 4.42 34.96 4.79
2785 3500 0.901580 GGTTAGGGGTGAGTCGACCA 60.902 60.000 13.01 7.31 37.80 4.02
2786 3501 0.971386 GTTAGGGGTGAGTCGACCAA 59.029 55.000 13.01 0.00 37.80 3.67
2787 3502 1.345415 GTTAGGGGTGAGTCGACCAAA 59.655 52.381 13.01 0.00 37.80 3.28
2788 3503 1.946984 TAGGGGTGAGTCGACCAAAT 58.053 50.000 13.01 0.00 37.80 2.32
2789 3504 1.064825 AGGGGTGAGTCGACCAAATT 58.935 50.000 13.01 0.00 37.80 1.82
2791 3506 1.539827 GGGGTGAGTCGACCAAATTTG 59.460 52.381 13.01 11.40 37.80 2.32
2792 3507 2.227194 GGGTGAGTCGACCAAATTTGT 58.773 47.619 16.73 5.32 37.80 2.83
2793 3508 2.621526 GGGTGAGTCGACCAAATTTGTT 59.378 45.455 16.73 2.17 37.80 2.83
2795 3510 4.440940 GGGTGAGTCGACCAAATTTGTTTT 60.441 41.667 16.73 0.89 37.80 2.43
2817 3532 4.695217 TTGGGTTAATCGATTGTTCTGC 57.305 40.909 20.87 4.30 0.00 4.26
2818 3533 3.013921 TGGGTTAATCGATTGTTCTGCC 58.986 45.455 20.87 12.00 0.00 4.85
2819 3534 3.013921 GGGTTAATCGATTGTTCTGCCA 58.986 45.455 20.87 0.00 0.00 4.92
2820 3535 3.632145 GGGTTAATCGATTGTTCTGCCAT 59.368 43.478 20.87 0.00 0.00 4.40
2821 3536 4.097892 GGGTTAATCGATTGTTCTGCCATT 59.902 41.667 20.87 0.00 0.00 3.16
2822 3537 5.036737 GGTTAATCGATTGTTCTGCCATTG 58.963 41.667 20.87 0.00 0.00 2.82
2823 3538 3.788333 AATCGATTGTTCTGCCATTGG 57.212 42.857 10.50 0.00 0.00 3.16
2824 3539 2.488204 TCGATTGTTCTGCCATTGGA 57.512 45.000 6.95 0.00 0.00 3.53
2825 3540 3.003394 TCGATTGTTCTGCCATTGGAT 57.997 42.857 6.95 0.00 0.00 3.41
2826 3541 2.684374 TCGATTGTTCTGCCATTGGATG 59.316 45.455 6.95 0.00 0.00 3.51
2841 3556 5.992729 CATTGGATGGAAAAGCAACAAAAG 58.007 37.500 0.00 0.00 0.00 2.27
2845 3560 6.355747 TGGATGGAAAAGCAACAAAAGAAAT 58.644 32.000 0.00 0.00 0.00 2.17
2847 3562 7.134163 GGATGGAAAAGCAACAAAAGAAATTG 58.866 34.615 0.00 0.00 36.37 2.32
2864 3579 9.539194 AAAGAAATTGTTCATTATCTTCCTCCT 57.461 29.630 0.00 0.00 36.09 3.69
2865 3580 8.744568 AGAAATTGTTCATTATCTTCCTCCTC 57.255 34.615 0.00 0.00 36.09 3.71
2866 3581 8.331740 AGAAATTGTTCATTATCTTCCTCCTCA 58.668 33.333 0.00 0.00 36.09 3.86
2867 3582 7.872113 AATTGTTCATTATCTTCCTCCTCAC 57.128 36.000 0.00 0.00 0.00 3.51
2868 3583 6.373005 TTGTTCATTATCTTCCTCCTCACA 57.627 37.500 0.00 0.00 0.00 3.58
2869 3584 6.373005 TGTTCATTATCTTCCTCCTCACAA 57.627 37.500 0.00 0.00 0.00 3.33
2871 3586 7.050377 TGTTCATTATCTTCCTCCTCACAATC 58.950 38.462 0.00 0.00 0.00 2.67
2872 3587 7.092712 TGTTCATTATCTTCCTCCTCACAATCT 60.093 37.037 0.00 0.00 0.00 2.40
2874 3589 7.278135 TCATTATCTTCCTCCTCACAATCTTG 58.722 38.462 0.00 0.00 0.00 3.02
2875 3590 6.874278 TTATCTTCCTCCTCACAATCTTGA 57.126 37.500 0.00 0.00 0.00 3.02
2876 3591 5.972327 ATCTTCCTCCTCACAATCTTGAT 57.028 39.130 0.00 0.00 0.00 2.57
2877 3592 5.350504 TCTTCCTCCTCACAATCTTGATC 57.649 43.478 0.00 0.00 0.00 2.92
2878 3593 5.028802 TCTTCCTCCTCACAATCTTGATCT 58.971 41.667 0.00 0.00 0.00 2.75
2879 3594 6.197903 TCTTCCTCCTCACAATCTTGATCTA 58.802 40.000 0.00 0.00 0.00 1.98
2880 3595 6.669591 TCTTCCTCCTCACAATCTTGATCTAA 59.330 38.462 0.00 0.00 0.00 2.10
2881 3596 6.874278 TCCTCCTCACAATCTTGATCTAAA 57.126 37.500 0.00 0.00 0.00 1.85
2882 3597 6.644347 TCCTCCTCACAATCTTGATCTAAAC 58.356 40.000 0.00 0.00 0.00 2.01
2883 3598 5.819901 CCTCCTCACAATCTTGATCTAAACC 59.180 44.000 0.00 0.00 0.00 3.27
2885 3600 5.488919 TCCTCACAATCTTGATCTAAACCCT 59.511 40.000 0.00 0.00 0.00 4.34
2886 3601 6.012508 TCCTCACAATCTTGATCTAAACCCTT 60.013 38.462 0.00 0.00 0.00 3.95
2887 3602 6.660949 CCTCACAATCTTGATCTAAACCCTTT 59.339 38.462 0.00 0.00 0.00 3.11
2888 3603 7.148171 CCTCACAATCTTGATCTAAACCCTTTC 60.148 40.741 0.00 0.00 0.00 2.62
2889 3604 7.461749 TCACAATCTTGATCTAAACCCTTTCT 58.538 34.615 0.00 0.00 0.00 2.52
2891 3606 8.579863 CACAATCTTGATCTAAACCCTTTCTTT 58.420 33.333 0.00 0.00 0.00 2.52
2892 3607 8.797438 ACAATCTTGATCTAAACCCTTTCTTTC 58.203 33.333 0.00 0.00 0.00 2.62
2894 3609 8.800370 ATCTTGATCTAAACCCTTTCTTTCTC 57.200 34.615 0.00 0.00 0.00 2.87
2895 3610 7.978925 TCTTGATCTAAACCCTTTCTTTCTCT 58.021 34.615 0.00 0.00 0.00 3.10
2896 3611 7.880195 TCTTGATCTAAACCCTTTCTTTCTCTG 59.120 37.037 0.00 0.00 0.00 3.35
2897 3612 6.476378 TGATCTAAACCCTTTCTTTCTCTGG 58.524 40.000 0.00 0.00 0.00 3.86
2898 3613 4.652822 TCTAAACCCTTTCTTTCTCTGGC 58.347 43.478 0.00 0.00 0.00 4.85
2899 3614 2.294449 AACCCTTTCTTTCTCTGGCC 57.706 50.000 0.00 0.00 0.00 5.36
2900 3615 0.036875 ACCCTTTCTTTCTCTGGCCG 59.963 55.000 0.00 0.00 0.00 6.13
2901 3616 1.308783 CCCTTTCTTTCTCTGGCCGC 61.309 60.000 0.00 0.00 0.00 6.53
2902 3617 1.308783 CCTTTCTTTCTCTGGCCGCC 61.309 60.000 1.04 1.04 0.00 6.13
2903 3618 1.303317 TTTCTTTCTCTGGCCGCCC 60.303 57.895 7.03 0.00 0.00 6.13
2904 3619 1.779061 TTTCTTTCTCTGGCCGCCCT 61.779 55.000 7.03 0.00 0.00 5.19
2905 3620 2.124942 CTTTCTCTGGCCGCCCTC 60.125 66.667 7.03 0.00 0.00 4.30
2907 3622 1.305802 TTTCTCTGGCCGCCCTCTA 60.306 57.895 7.03 0.00 0.00 2.43
2908 3623 1.330655 TTTCTCTGGCCGCCCTCTAG 61.331 60.000 7.03 0.00 0.00 2.43
2909 3624 3.922640 CTCTGGCCGCCCTCTAGC 61.923 72.222 7.03 0.00 0.00 3.42
2911 3626 3.922640 CTGGCCGCCCTCTAGCTC 61.923 72.222 7.03 0.00 0.00 4.09
2912 3627 4.777854 TGGCCGCCCTCTAGCTCA 62.778 66.667 7.03 0.00 0.00 4.26
2913 3628 3.922640 GGCCGCCCTCTAGCTCAG 61.923 72.222 0.00 0.00 0.00 3.35
2914 3629 4.600576 GCCGCCCTCTAGCTCAGC 62.601 72.222 0.00 0.00 0.00 4.26
2919 3672 1.454847 CCCTCTAGCTCAGCCGTCT 60.455 63.158 0.00 0.00 0.00 4.18
2922 3675 2.105930 CTAGCTCAGCCGTCTGCC 59.894 66.667 0.00 0.00 42.71 4.85
2923 3676 2.363018 TAGCTCAGCCGTCTGCCT 60.363 61.111 0.00 0.00 42.71 4.75
2927 3680 3.071206 TCAGCCGTCTGCCTCCTC 61.071 66.667 0.00 0.00 42.71 3.71
2947 3700 4.552365 CCCGTGGCCGATGATGCT 62.552 66.667 0.00 0.00 35.63 3.79
2949 3702 3.333189 CGTGGCCGATGATGCTCG 61.333 66.667 0.00 0.00 38.37 5.03
2950 3703 2.106938 GTGGCCGATGATGCTCGA 59.893 61.111 0.00 0.00 41.12 4.04
2951 3704 1.301244 GTGGCCGATGATGCTCGAT 60.301 57.895 0.00 0.00 41.12 3.59
2952 3705 1.005748 TGGCCGATGATGCTCGATC 60.006 57.895 0.00 0.00 41.12 3.69
2953 3706 2.091112 GGCCGATGATGCTCGATCG 61.091 63.158 9.36 9.36 41.12 3.69
2954 3707 2.724708 GCCGATGATGCTCGATCGC 61.725 63.158 11.09 0.00 41.12 4.58
2955 3708 2.091112 CCGATGATGCTCGATCGCC 61.091 63.158 11.09 4.37 41.12 5.54
2956 3709 2.091112 CGATGATGCTCGATCGCCC 61.091 63.158 11.09 3.97 41.12 6.13
2957 3710 1.291588 GATGATGCTCGATCGCCCT 59.708 57.895 11.09 0.00 33.17 5.19
2958 3711 1.005275 ATGATGCTCGATCGCCCTG 60.005 57.895 11.09 1.62 33.17 4.45
2979 4407 4.400251 CCCCGTCCTCCCCTCACT 62.400 72.222 0.00 0.00 0.00 3.41
2980 4408 3.077556 CCCGTCCTCCCCTCACTG 61.078 72.222 0.00 0.00 0.00 3.66
2981 4409 2.283966 CCGTCCTCCCCTCACTGT 60.284 66.667 0.00 0.00 0.00 3.55
2982 4410 2.352032 CCGTCCTCCCCTCACTGTC 61.352 68.421 0.00 0.00 0.00 3.51
2983 4411 2.701780 CGTCCTCCCCTCACTGTCG 61.702 68.421 0.00 0.00 0.00 4.35
2986 4414 2.283966 CTCCCCTCACTGTCGGGT 60.284 66.667 10.00 0.00 38.88 5.28
2987 4415 1.913762 CTCCCCTCACTGTCGGGTT 60.914 63.158 10.00 0.00 38.88 4.11
2988 4416 1.460689 TCCCCTCACTGTCGGGTTT 60.461 57.895 10.00 0.00 38.88 3.27
2989 4417 1.302511 CCCCTCACTGTCGGGTTTG 60.303 63.158 10.00 0.00 38.88 2.93
2990 4418 1.302511 CCCTCACTGTCGGGTTTGG 60.303 63.158 3.98 0.00 35.65 3.28
2991 4419 1.966451 CCTCACTGTCGGGTTTGGC 60.966 63.158 0.00 0.00 0.00 4.52
2992 4420 2.280524 TCACTGTCGGGTTTGGCG 60.281 61.111 0.00 0.00 0.00 5.69
2993 4421 2.590575 CACTGTCGGGTTTGGCGT 60.591 61.111 0.00 0.00 0.00 5.68
2994 4422 2.280592 ACTGTCGGGTTTGGCGTC 60.281 61.111 0.00 0.00 0.00 5.19
2995 4423 3.411351 CTGTCGGGTTTGGCGTCG 61.411 66.667 0.00 0.00 0.00 5.12
2996 4424 4.973055 TGTCGGGTTTGGCGTCGG 62.973 66.667 0.00 0.00 0.00 4.79
3000 4428 3.733960 GGGTTTGGCGTCGGCTTC 61.734 66.667 20.29 9.66 39.81 3.86
3001 4429 4.084888 GGTTTGGCGTCGGCTTCG 62.085 66.667 20.29 0.00 39.81 3.79
3002 4430 4.084888 GTTTGGCGTCGGCTTCGG 62.085 66.667 20.29 0.00 39.81 4.30
3019 4447 2.524394 GCTCCGGCCATCCCTCTA 60.524 66.667 2.24 0.00 0.00 2.43
3020 4448 2.140792 GCTCCGGCCATCCCTCTAA 61.141 63.158 2.24 0.00 0.00 2.10
3021 4449 1.696097 GCTCCGGCCATCCCTCTAAA 61.696 60.000 2.24 0.00 0.00 1.85
3033 4461 0.458669 CCTCTAAAGCCGGCGAACTA 59.541 55.000 23.20 10.08 0.00 2.24
3034 4462 1.557651 CTCTAAAGCCGGCGAACTAC 58.442 55.000 23.20 0.00 0.00 2.73
3037 4465 2.561549 TAAAGCCGGCGAACTACCCG 62.562 60.000 23.20 0.00 43.97 5.28
3044 4472 1.568606 GGCGAACTACCCGATTTCTC 58.431 55.000 0.00 0.00 0.00 2.87
3045 4473 1.136500 GGCGAACTACCCGATTTCTCT 59.864 52.381 0.00 0.00 0.00 3.10
3046 4474 2.194271 GCGAACTACCCGATTTCTCTG 58.806 52.381 0.00 0.00 0.00 3.35
3048 4476 2.165845 CGAACTACCCGATTTCTCTGGT 59.834 50.000 0.00 0.00 41.39 4.00
3049 4477 3.379372 CGAACTACCCGATTTCTCTGGTA 59.621 47.826 0.00 0.00 39.46 3.25
3051 4479 5.622914 CGAACTACCCGATTTCTCTGGTAAA 60.623 44.000 0.00 0.00 39.76 2.01
3053 4481 4.776308 ACTACCCGATTTCTCTGGTAAACT 59.224 41.667 0.00 0.00 39.76 2.66
3054 4482 4.635699 ACCCGATTTCTCTGGTAAACTT 57.364 40.909 0.00 0.00 37.24 2.66
3063 4491 0.178975 CTGGTAAACTTGCACCCCCA 60.179 55.000 0.00 0.00 33.61 4.96
3067 4495 0.114168 TAAACTTGCACCCCCAGCAT 59.886 50.000 0.00 0.00 42.33 3.79
3069 4497 2.036098 CTTGCACCCCCAGCATCA 59.964 61.111 0.00 0.00 42.33 3.07
3082 4510 3.643320 CCCAGCATCACTAAGATAGACCA 59.357 47.826 0.00 0.00 34.43 4.02
3088 4516 5.510520 GCATCACTAAGATAGACCAAGAGGG 60.511 48.000 0.00 0.00 37.76 4.30
3089 4517 5.600484 CATCACTAAGATAGACCAAGAGGGT 59.400 44.000 0.00 0.00 44.49 4.34
3098 4527 1.676967 CCAAGAGGGTGCTGCTTCC 60.677 63.158 0.00 3.53 0.00 3.46
3145 4709 2.031120 GCCATAATGCTTTGCCAGGTA 58.969 47.619 0.00 0.00 0.00 3.08
3146 4710 2.430332 GCCATAATGCTTTGCCAGGTAA 59.570 45.455 0.00 0.00 0.00 2.85
3155 4719 3.305403 GCTTTGCCAGGTAAAGGAAGAAC 60.305 47.826 26.28 9.13 36.14 3.01
3156 4720 3.876309 TTGCCAGGTAAAGGAAGAACT 57.124 42.857 0.00 0.00 0.00 3.01
3184 4761 6.926280 TGTAATTTTGCATCGACATGTTTC 57.074 33.333 0.00 0.00 31.86 2.78
3187 4764 4.566545 TTTTGCATCGACATGTTTCAGT 57.433 36.364 0.00 0.00 31.86 3.41
3200 4777 1.495584 TTTCAGTGTCGCGTTCTGGC 61.496 55.000 20.30 3.84 0.00 4.85
3227 4804 6.804677 TGACTTGTTGCAATTGTTGATTAGT 58.195 32.000 0.59 4.40 0.00 2.24
3229 4806 7.860373 TGACTTGTTGCAATTGTTGATTAGTAC 59.140 33.333 0.59 0.00 0.00 2.73
3230 4807 7.940850 ACTTGTTGCAATTGTTGATTAGTACT 58.059 30.769 0.59 0.00 0.00 2.73
3231 4808 9.062524 ACTTGTTGCAATTGTTGATTAGTACTA 57.937 29.630 0.59 0.00 0.00 1.82
3232 4809 9.329913 CTTGTTGCAATTGTTGATTAGTACTAC 57.670 33.333 0.59 0.00 0.00 2.73
3269 4846 1.212751 GTTGGCGGAATTGTGAGGC 59.787 57.895 0.00 0.00 0.00 4.70
3273 4850 0.392461 GGCGGAATTGTGAGGCTACA 60.392 55.000 0.00 0.00 0.00 2.74
3277 4854 1.282157 GGAATTGTGAGGCTACACCCT 59.718 52.381 12.45 0.00 40.58 4.34
3383 4961 5.415221 TGGAGAACAAACCAAACACAATTC 58.585 37.500 0.00 0.00 32.93 2.17
3384 4962 4.808895 GGAGAACAAACCAAACACAATTCC 59.191 41.667 0.00 0.00 0.00 3.01
3385 4963 5.413309 AGAACAAACCAAACACAATTCCA 57.587 34.783 0.00 0.00 0.00 3.53
3386 4964 5.799213 AGAACAAACCAAACACAATTCCAA 58.201 33.333 0.00 0.00 0.00 3.53
3387 4965 6.413892 AGAACAAACCAAACACAATTCCAAT 58.586 32.000 0.00 0.00 0.00 3.16
3390 4968 7.784633 ACAAACCAAACACAATTCCAATAAG 57.215 32.000 0.00 0.00 0.00 1.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
121 122 2.408050 CATGCTACAGATAAGCCGGAC 58.592 52.381 5.05 0.00 39.30 4.79
308 309 0.743701 CGAAGCTCCATTGCAGCTCT 60.744 55.000 1.80 0.00 46.96 4.09
547 1122 4.827481 GGCGACGAGGCTTCATTA 57.173 55.556 0.00 0.00 42.90 1.90
841 1421 6.202954 GCAGCTCGTTTAATATAACCATGACT 59.797 38.462 0.00 0.00 0.00 3.41
864 1444 2.608970 GATAAGCCGCCTTCCCAGCA 62.609 60.000 0.00 0.00 32.47 4.41
922 1502 4.934356 AGCCCTCAATTTGACAGGAAATA 58.066 39.130 12.80 0.00 0.00 1.40
923 1503 3.782992 AGCCCTCAATTTGACAGGAAAT 58.217 40.909 12.80 0.00 0.00 2.17
924 1504 3.243359 AGCCCTCAATTTGACAGGAAA 57.757 42.857 12.80 0.00 0.00 3.13
925 1505 2.978156 AGCCCTCAATTTGACAGGAA 57.022 45.000 12.80 0.00 0.00 3.36
926 1506 5.708736 TTATAGCCCTCAATTTGACAGGA 57.291 39.130 12.80 0.00 0.00 3.86
927 1507 5.829924 ACATTATAGCCCTCAATTTGACAGG 59.170 40.000 0.00 0.97 0.00 4.00
928 1508 6.238842 CCACATTATAGCCCTCAATTTGACAG 60.239 42.308 0.00 0.00 0.00 3.51
929 1509 5.593909 CCACATTATAGCCCTCAATTTGACA 59.406 40.000 0.00 0.00 0.00 3.58
930 1510 5.827797 TCCACATTATAGCCCTCAATTTGAC 59.172 40.000 0.00 0.00 0.00 3.18
931 1511 5.827797 GTCCACATTATAGCCCTCAATTTGA 59.172 40.000 0.00 0.00 0.00 2.69
932 1512 5.010012 GGTCCACATTATAGCCCTCAATTTG 59.990 44.000 0.00 0.00 0.00 2.32
933 1513 5.140454 GGTCCACATTATAGCCCTCAATTT 58.860 41.667 0.00 0.00 0.00 1.82
934 1514 4.167892 TGGTCCACATTATAGCCCTCAATT 59.832 41.667 0.00 0.00 0.00 2.32
982 1562 1.679969 TTGGGGATGGGGTTTTGGGT 61.680 55.000 0.00 0.00 0.00 4.51
988 1568 0.478507 GATCGATTGGGGATGGGGTT 59.521 55.000 0.00 0.00 0.00 4.11
1093 1719 2.372690 CGTCCTCTGGTTTGCGTCG 61.373 63.158 0.00 0.00 0.00 5.12
1112 1738 3.909662 ATGGTTCGTGCCATGAGC 58.090 55.556 11.53 0.00 46.63 4.26
1122 1751 1.662629 GTGATGCAGTCAGATGGTTCG 59.337 52.381 0.00 0.00 37.56 3.95
1135 1764 3.635191 TGCCTCCGTGGTGATGCA 61.635 61.111 0.00 0.00 38.35 3.96
1205 1834 2.202623 ATGCCTCTTCGTCGTCGC 60.203 61.111 0.00 0.00 36.96 5.19
1215 1844 0.532573 CACCACGTACAGATGCCTCT 59.467 55.000 0.00 0.00 0.00 3.69
1217 1846 1.079127 GCACCACGTACAGATGCCT 60.079 57.895 0.00 0.00 0.00 4.75
1402 2046 1.028330 CGGTGGTGATGATGCAGCTT 61.028 55.000 2.53 0.00 37.20 3.74
1446 2090 0.741221 GCCGTAGTGCTCTTCCCTTG 60.741 60.000 0.00 0.00 0.00 3.61
1974 2656 3.680338 GAGGTCGCTCGTCGGAACC 62.680 68.421 0.00 0.00 39.05 3.62
2050 2732 2.932234 CGACGTGCCTCCAGTCCTT 61.932 63.158 0.00 0.00 0.00 3.36
2051 2733 3.374402 CGACGTGCCTCCAGTCCT 61.374 66.667 0.00 0.00 0.00 3.85
2246 2928 1.138047 CTTGTAAGAGCGGGCGTACG 61.138 60.000 11.84 11.84 0.00 3.67
2266 2948 1.099295 TCATCGCGGTACCTCGACAT 61.099 55.000 27.95 11.74 37.55 3.06
2286 2968 2.589442 AACGCCGCAACCTCGAAA 60.589 55.556 0.00 0.00 0.00 3.46
2289 2971 3.777925 CAGAACGCCGCAACCTCG 61.778 66.667 0.00 0.00 0.00 4.63
2298 2980 2.906354 ACAAGTCATATCCAGAACGCC 58.094 47.619 0.00 0.00 0.00 5.68
2462 3176 3.615614 GAGCTAGCTTGCATCAAAATCG 58.384 45.455 20.42 0.00 34.99 3.34
2463 3177 3.547613 CCGAGCTAGCTTGCATCAAAATC 60.548 47.826 24.53 7.93 34.99 2.17
2488 3202 0.314302 CCTCCATCCCGTACGTCATC 59.686 60.000 15.21 0.00 0.00 2.92
2498 3212 2.190578 CTTCACGGCCTCCATCCC 59.809 66.667 0.00 0.00 0.00 3.85
2502 3216 2.203788 AGGACTTCACGGCCTCCA 60.204 61.111 9.01 0.00 0.00 3.86
2510 3224 2.663196 CGTGGGGGAGGACTTCAC 59.337 66.667 0.00 0.00 0.00 3.18
2524 3239 1.781025 TTCTTCAGGTTTGCCGCGTG 61.781 55.000 4.92 0.00 40.50 5.34
2546 3261 6.767902 TGTATCATAGAAAAGAGAACATGGCC 59.232 38.462 0.00 0.00 0.00 5.36
2564 3279 8.746530 TCCGAGAGTAAGTTAAAAGTGTATCAT 58.253 33.333 0.00 0.00 0.00 2.45
2565 3280 8.114331 TCCGAGAGTAAGTTAAAAGTGTATCA 57.886 34.615 0.00 0.00 0.00 2.15
2566 3281 8.976986 TTCCGAGAGTAAGTTAAAAGTGTATC 57.023 34.615 0.00 0.00 0.00 2.24
2567 3282 9.768662 TTTTCCGAGAGTAAGTTAAAAGTGTAT 57.231 29.630 0.00 0.00 0.00 2.29
2568 3283 9.598517 TTTTTCCGAGAGTAAGTTAAAAGTGTA 57.401 29.630 0.00 0.00 0.00 2.90
2569 3284 8.496707 TTTTTCCGAGAGTAAGTTAAAAGTGT 57.503 30.769 0.00 0.00 0.00 3.55
2613 3328 5.596361 TGGTGTGAACCTCATGTTACAAAAT 59.404 36.000 0.00 0.00 37.29 1.82
2629 3344 3.117851 TGGATAAGGTGTTGTGGTGTGAA 60.118 43.478 0.00 0.00 0.00 3.18
2630 3345 2.439880 TGGATAAGGTGTTGTGGTGTGA 59.560 45.455 0.00 0.00 0.00 3.58
2631 3346 2.552315 GTGGATAAGGTGTTGTGGTGTG 59.448 50.000 0.00 0.00 0.00 3.82
2632 3347 2.808933 CGTGGATAAGGTGTTGTGGTGT 60.809 50.000 0.00 0.00 0.00 4.16
2633 3348 1.804151 CGTGGATAAGGTGTTGTGGTG 59.196 52.381 0.00 0.00 0.00 4.17
2634 3349 1.418637 ACGTGGATAAGGTGTTGTGGT 59.581 47.619 0.00 0.00 0.00 4.16
2635 3350 1.804151 CACGTGGATAAGGTGTTGTGG 59.196 52.381 7.95 0.00 39.36 4.17
2638 3353 1.724623 CGTCACGTGGATAAGGTGTTG 59.275 52.381 17.00 0.00 43.64 3.33
2639 3354 1.337447 CCGTCACGTGGATAAGGTGTT 60.337 52.381 17.00 0.00 43.64 3.32
2640 3355 0.245539 CCGTCACGTGGATAAGGTGT 59.754 55.000 17.00 0.00 43.64 4.16
2642 3357 1.895238 CCCGTCACGTGGATAAGGT 59.105 57.895 17.00 0.00 0.00 3.50
2643 3358 1.520787 GCCCGTCACGTGGATAAGG 60.521 63.158 17.00 8.21 0.00 2.69
2644 3359 1.876714 CGCCCGTCACGTGGATAAG 60.877 63.158 17.00 2.46 0.00 1.73
2646 3361 3.829044 CCGCCCGTCACGTGGATA 61.829 66.667 17.00 0.00 0.00 2.59
2650 3365 4.953868 TCAACCGCCCGTCACGTG 62.954 66.667 9.94 9.94 0.00 4.49
2652 3367 3.271706 TAGTCAACCGCCCGTCACG 62.272 63.158 0.00 0.00 0.00 4.35
2653 3368 1.445582 CTAGTCAACCGCCCGTCAC 60.446 63.158 0.00 0.00 0.00 3.67
2655 3370 1.153881 GACTAGTCAACCGCCCGTC 60.154 63.158 18.20 0.00 0.00 4.79
2656 3371 1.466025 TTGACTAGTCAACCGCCCGT 61.466 55.000 30.07 0.00 43.90 5.28
2664 3379 7.639113 AGTTTGATTGGTTTTGACTAGTCAA 57.361 32.000 30.07 30.07 46.72 3.18
2665 3380 8.617809 GTTAGTTTGATTGGTTTTGACTAGTCA 58.382 33.333 21.74 21.74 37.91 3.41
2666 3381 8.074370 GGTTAGTTTGATTGGTTTTGACTAGTC 58.926 37.037 16.32 16.32 0.00 2.59
2667 3382 7.558444 TGGTTAGTTTGATTGGTTTTGACTAGT 59.442 33.333 0.00 0.00 0.00 2.57
2668 3383 7.936584 TGGTTAGTTTGATTGGTTTTGACTAG 58.063 34.615 0.00 0.00 0.00 2.57
2670 3385 6.605594 TCTGGTTAGTTTGATTGGTTTTGACT 59.394 34.615 0.00 0.00 0.00 3.41
2671 3386 6.801575 TCTGGTTAGTTTGATTGGTTTTGAC 58.198 36.000 0.00 0.00 0.00 3.18
2672 3387 7.411486 TTCTGGTTAGTTTGATTGGTTTTGA 57.589 32.000 0.00 0.00 0.00 2.69
2675 3390 7.616313 TGTTTTCTGGTTAGTTTGATTGGTTT 58.384 30.769 0.00 0.00 0.00 3.27
2677 3392 6.379988 ACTGTTTTCTGGTTAGTTTGATTGGT 59.620 34.615 0.00 0.00 0.00 3.67
2678 3393 6.805713 ACTGTTTTCTGGTTAGTTTGATTGG 58.194 36.000 0.00 0.00 0.00 3.16
2679 3394 8.702163 AAACTGTTTTCTGGTTAGTTTGATTG 57.298 30.769 0.00 0.00 39.37 2.67
2684 3399 7.175990 TCACTCAAACTGTTTTCTGGTTAGTTT 59.824 33.333 2.41 0.00 40.93 2.66
2686 3401 6.177610 TCACTCAAACTGTTTTCTGGTTAGT 58.822 36.000 2.41 0.00 0.00 2.24
2688 3403 5.065988 GCTCACTCAAACTGTTTTCTGGTTA 59.934 40.000 2.41 0.00 0.00 2.85
2690 3405 3.378427 GCTCACTCAAACTGTTTTCTGGT 59.622 43.478 2.41 0.00 0.00 4.00
2693 3408 3.620488 TGGCTCACTCAAACTGTTTTCT 58.380 40.909 2.41 0.00 0.00 2.52
2694 3409 4.370364 TTGGCTCACTCAAACTGTTTTC 57.630 40.909 2.41 0.00 0.00 2.29
2695 3410 4.160252 ACATTGGCTCACTCAAACTGTTTT 59.840 37.500 2.41 0.00 0.00 2.43
2697 3412 3.290710 ACATTGGCTCACTCAAACTGTT 58.709 40.909 0.00 0.00 0.00 3.16
2700 3415 6.096846 ACTTTTAACATTGGCTCACTCAAACT 59.903 34.615 0.00 0.00 0.00 2.66
2702 3417 6.463995 ACTTTTAACATTGGCTCACTCAAA 57.536 33.333 0.00 0.00 0.00 2.69
2705 3420 5.831997 ACAACTTTTAACATTGGCTCACTC 58.168 37.500 0.00 0.00 0.00 3.51
2706 3421 5.594317 AGACAACTTTTAACATTGGCTCACT 59.406 36.000 0.00 0.00 37.05 3.41
2708 3423 5.221224 CCAGACAACTTTTAACATTGGCTCA 60.221 40.000 0.00 0.00 39.76 4.26
2709 3424 5.221244 ACCAGACAACTTTTAACATTGGCTC 60.221 40.000 0.00 0.00 39.76 4.70
2710 3425 4.649218 ACCAGACAACTTTTAACATTGGCT 59.351 37.500 0.00 0.00 42.58 4.75
2712 3427 6.391227 AGACCAGACAACTTTTAACATTGG 57.609 37.500 0.00 0.00 0.00 3.16
2716 3431 9.016438 ACTTTTAAGACCAGACAACTTTTAACA 57.984 29.630 0.00 0.00 0.00 2.41
2748 3463 9.782900 CCCCTAACCATTCCCATAAAATATAAT 57.217 33.333 0.00 0.00 0.00 1.28
2749 3464 8.748233 ACCCCTAACCATTCCCATAAAATATAA 58.252 33.333 0.00 0.00 0.00 0.98
2751 3466 7.016296 CACCCCTAACCATTCCCATAAAATAT 58.984 38.462 0.00 0.00 0.00 1.28
2753 3468 5.042979 TCACCCCTAACCATTCCCATAAAAT 60.043 40.000 0.00 0.00 0.00 1.82
2754 3469 4.295238 TCACCCCTAACCATTCCCATAAAA 59.705 41.667 0.00 0.00 0.00 1.52
2755 3470 3.859248 TCACCCCTAACCATTCCCATAAA 59.141 43.478 0.00 0.00 0.00 1.40
2756 3471 3.461831 CTCACCCCTAACCATTCCCATAA 59.538 47.826 0.00 0.00 0.00 1.90
2759 3474 1.295020 CTCACCCCTAACCATTCCCA 58.705 55.000 0.00 0.00 0.00 4.37
2760 3475 1.212195 GACTCACCCCTAACCATTCCC 59.788 57.143 0.00 0.00 0.00 3.97
2761 3476 1.134491 CGACTCACCCCTAACCATTCC 60.134 57.143 0.00 0.00 0.00 3.01
2765 3480 0.901580 GGTCGACTCACCCCTAACCA 60.902 60.000 16.46 0.00 0.00 3.67
2767 3482 0.971386 TTGGTCGACTCACCCCTAAC 59.029 55.000 16.46 0.00 35.26 2.34
2768 3483 1.719529 TTTGGTCGACTCACCCCTAA 58.280 50.000 16.46 0.00 35.26 2.69
2769 3484 1.946984 ATTTGGTCGACTCACCCCTA 58.053 50.000 16.46 0.00 35.26 3.53
2770 3485 1.064825 AATTTGGTCGACTCACCCCT 58.935 50.000 16.46 0.00 35.26 4.79
2771 3486 1.539827 CAAATTTGGTCGACTCACCCC 59.460 52.381 16.46 0.00 35.26 4.95
2772 3487 2.227194 ACAAATTTGGTCGACTCACCC 58.773 47.619 21.74 0.00 35.26 4.61
2773 3488 3.982576 AACAAATTTGGTCGACTCACC 57.017 42.857 21.74 0.00 36.90 4.02
2793 3508 5.923684 GCAGAACAATCGATTAACCCAAAAA 59.076 36.000 10.97 0.00 0.00 1.94
2795 3510 4.082463 GGCAGAACAATCGATTAACCCAAA 60.082 41.667 10.97 0.00 0.00 3.28
2797 3512 3.013921 GGCAGAACAATCGATTAACCCA 58.986 45.455 10.97 0.00 0.00 4.51
2798 3513 3.013921 TGGCAGAACAATCGATTAACCC 58.986 45.455 10.97 6.44 0.00 4.11
2799 3514 4.900635 ATGGCAGAACAATCGATTAACC 57.099 40.909 10.97 6.80 0.00 2.85
2800 3515 5.036737 CCAATGGCAGAACAATCGATTAAC 58.963 41.667 10.97 5.41 0.00 2.01
2801 3516 4.946772 TCCAATGGCAGAACAATCGATTAA 59.053 37.500 10.97 0.00 0.00 1.40
2802 3517 4.522114 TCCAATGGCAGAACAATCGATTA 58.478 39.130 10.97 0.00 0.00 1.75
2803 3518 3.355378 TCCAATGGCAGAACAATCGATT 58.645 40.909 4.39 4.39 0.00 3.34
2804 3519 3.003394 TCCAATGGCAGAACAATCGAT 57.997 42.857 0.00 0.00 0.00 3.59
2805 3520 2.488204 TCCAATGGCAGAACAATCGA 57.512 45.000 0.00 0.00 0.00 3.59
2806 3521 2.223641 CCATCCAATGGCAGAACAATCG 60.224 50.000 0.00 0.00 44.70 3.34
2807 3522 3.447918 CCATCCAATGGCAGAACAATC 57.552 47.619 0.00 0.00 44.70 2.67
2818 3533 5.759273 TCTTTTGTTGCTTTTCCATCCAATG 59.241 36.000 0.00 0.00 0.00 2.82
2819 3534 5.927819 TCTTTTGTTGCTTTTCCATCCAAT 58.072 33.333 0.00 0.00 0.00 3.16
2820 3535 5.350504 TCTTTTGTTGCTTTTCCATCCAA 57.649 34.783 0.00 0.00 0.00 3.53
2821 3536 5.350504 TTCTTTTGTTGCTTTTCCATCCA 57.649 34.783 0.00 0.00 0.00 3.41
2822 3537 6.866010 ATTTCTTTTGTTGCTTTTCCATCC 57.134 33.333 0.00 0.00 0.00 3.51
2823 3538 7.696755 ACAATTTCTTTTGTTGCTTTTCCATC 58.303 30.769 0.00 0.00 36.43 3.51
2824 3539 7.628769 ACAATTTCTTTTGTTGCTTTTCCAT 57.371 28.000 0.00 0.00 36.43 3.41
2825 3540 7.173907 TGAACAATTTCTTTTGTTGCTTTTCCA 59.826 29.630 7.25 0.00 46.84 3.53
2826 3541 7.525759 TGAACAATTTCTTTTGTTGCTTTTCC 58.474 30.769 7.25 0.00 46.84 3.13
2827 3542 9.558648 AATGAACAATTTCTTTTGTTGCTTTTC 57.441 25.926 7.25 0.00 46.84 2.29
2831 3546 9.768662 AGATAATGAACAATTTCTTTTGTTGCT 57.231 25.926 7.25 0.00 46.84 3.91
2838 3553 9.539194 AGGAGGAAGATAATGAACAATTTCTTT 57.461 29.630 0.00 0.00 34.41 2.52
2841 3556 8.401709 GTGAGGAGGAAGATAATGAACAATTTC 58.598 37.037 0.00 0.00 0.00 2.17
2845 3560 6.373005 TGTGAGGAGGAAGATAATGAACAA 57.627 37.500 0.00 0.00 0.00 2.83
2847 3562 7.278875 AGATTGTGAGGAGGAAGATAATGAAC 58.721 38.462 0.00 0.00 0.00 3.18
2855 3570 5.028802 AGATCAAGATTGTGAGGAGGAAGA 58.971 41.667 0.00 0.00 0.00 2.87
2856 3571 5.356291 AGATCAAGATTGTGAGGAGGAAG 57.644 43.478 0.00 0.00 0.00 3.46
2860 3575 5.819901 GGGTTTAGATCAAGATTGTGAGGAG 59.180 44.000 0.00 0.00 0.00 3.69
2861 3576 5.488919 AGGGTTTAGATCAAGATTGTGAGGA 59.511 40.000 0.00 0.00 0.00 3.71
2862 3577 5.749462 AGGGTTTAGATCAAGATTGTGAGG 58.251 41.667 0.00 0.00 0.00 3.86
2863 3578 7.609532 AGAAAGGGTTTAGATCAAGATTGTGAG 59.390 37.037 0.00 0.00 0.00 3.51
2864 3579 7.461749 AGAAAGGGTTTAGATCAAGATTGTGA 58.538 34.615 0.00 0.00 0.00 3.58
2865 3580 7.693969 AGAAAGGGTTTAGATCAAGATTGTG 57.306 36.000 0.00 0.00 0.00 3.33
2866 3581 8.712228 AAAGAAAGGGTTTAGATCAAGATTGT 57.288 30.769 0.00 0.00 0.00 2.71
2867 3582 9.018582 AGAAAGAAAGGGTTTAGATCAAGATTG 57.981 33.333 0.00 0.00 0.00 2.67
2868 3583 9.237187 GAGAAAGAAAGGGTTTAGATCAAGATT 57.763 33.333 0.00 0.00 0.00 2.40
2869 3584 8.610369 AGAGAAAGAAAGGGTTTAGATCAAGAT 58.390 33.333 0.00 0.00 0.00 2.40
2871 3586 7.120432 CCAGAGAAAGAAAGGGTTTAGATCAAG 59.880 40.741 0.00 0.00 0.00 3.02
2872 3587 6.942576 CCAGAGAAAGAAAGGGTTTAGATCAA 59.057 38.462 0.00 0.00 0.00 2.57
2874 3589 5.355630 GCCAGAGAAAGAAAGGGTTTAGATC 59.644 44.000 0.00 0.00 0.00 2.75
2875 3590 5.257262 GCCAGAGAAAGAAAGGGTTTAGAT 58.743 41.667 0.00 0.00 0.00 1.98
2876 3591 4.506802 GGCCAGAGAAAGAAAGGGTTTAGA 60.507 45.833 0.00 0.00 0.00 2.10
2877 3592 3.759086 GGCCAGAGAAAGAAAGGGTTTAG 59.241 47.826 0.00 0.00 0.00 1.85
2878 3593 3.763057 GGCCAGAGAAAGAAAGGGTTTA 58.237 45.455 0.00 0.00 0.00 2.01
2879 3594 2.598565 GGCCAGAGAAAGAAAGGGTTT 58.401 47.619 0.00 0.00 0.00 3.27
2880 3595 1.545651 CGGCCAGAGAAAGAAAGGGTT 60.546 52.381 2.24 0.00 0.00 4.11
2881 3596 0.036875 CGGCCAGAGAAAGAAAGGGT 59.963 55.000 2.24 0.00 0.00 4.34
2882 3597 1.308783 GCGGCCAGAGAAAGAAAGGG 61.309 60.000 2.24 0.00 0.00 3.95
2883 3598 1.308783 GGCGGCCAGAGAAAGAAAGG 61.309 60.000 15.62 0.00 0.00 3.11
2885 3600 1.303317 GGGCGGCCAGAGAAAGAAA 60.303 57.895 25.33 0.00 0.00 2.52
2886 3601 2.185310 GAGGGCGGCCAGAGAAAGAA 62.185 60.000 31.59 0.00 0.00 2.52
2887 3602 2.607750 AGGGCGGCCAGAGAAAGA 60.608 61.111 31.59 0.00 0.00 2.52
2888 3603 1.330655 TAGAGGGCGGCCAGAGAAAG 61.331 60.000 31.59 0.00 0.00 2.62
2889 3604 1.305802 TAGAGGGCGGCCAGAGAAA 60.306 57.895 31.59 6.08 0.00 2.52
2891 3606 2.123683 CTAGAGGGCGGCCAGAGA 60.124 66.667 31.59 11.19 0.00 3.10
2892 3607 3.922640 GCTAGAGGGCGGCCAGAG 61.923 72.222 31.59 22.95 0.00 3.35
2894 3609 3.922640 GAGCTAGAGGGCGGCCAG 61.923 72.222 31.59 19.83 37.29 4.85
2895 3610 4.777854 TGAGCTAGAGGGCGGCCA 62.778 66.667 31.59 8.79 37.29 5.36
2896 3611 3.922640 CTGAGCTAGAGGGCGGCC 61.923 72.222 22.67 22.67 37.29 6.13
2897 3612 4.600576 GCTGAGCTAGAGGGCGGC 62.601 72.222 0.00 0.00 37.29 6.53
2898 3613 3.922640 GGCTGAGCTAGAGGGCGG 61.923 72.222 3.72 0.00 37.29 6.13
2899 3614 4.277593 CGGCTGAGCTAGAGGGCG 62.278 72.222 3.72 8.63 40.84 6.13
2900 3615 3.145422 GACGGCTGAGCTAGAGGGC 62.145 68.421 3.72 0.00 0.00 5.19
2901 3616 1.454847 AGACGGCTGAGCTAGAGGG 60.455 63.158 3.72 0.00 0.00 4.30
2902 3617 1.732917 CAGACGGCTGAGCTAGAGG 59.267 63.158 14.96 0.00 45.17 3.69
2903 3618 1.065600 GCAGACGGCTGAGCTAGAG 59.934 63.158 26.04 0.00 45.17 2.43
2904 3619 2.418910 GGCAGACGGCTGAGCTAGA 61.419 63.158 26.04 0.00 45.17 2.43
2905 3620 2.105930 GGCAGACGGCTGAGCTAG 59.894 66.667 26.04 1.25 45.17 3.42
2933 3686 1.287730 GATCGAGCATCATCGGCCAC 61.288 60.000 2.24 0.00 42.93 5.01
2936 3689 2.724708 GCGATCGAGCATCATCGGC 61.725 63.158 21.57 0.00 42.33 5.54
2940 3693 1.005275 CAGGGCGATCGAGCATCAT 60.005 57.895 21.57 0.00 39.27 2.45
2942 3695 3.040763 GCAGGGCGATCGAGCATC 61.041 66.667 21.57 0.00 39.27 3.91
2964 4392 2.283966 ACAGTGAGGGGAGGACGG 60.284 66.667 0.00 0.00 0.00 4.79
2973 4401 1.966451 GCCAAACCCGACAGTGAGG 60.966 63.158 0.00 0.00 0.00 3.86
2974 4402 2.317609 CGCCAAACCCGACAGTGAG 61.318 63.158 0.00 0.00 0.00 3.51
2975 4403 2.280524 CGCCAAACCCGACAGTGA 60.281 61.111 0.00 0.00 0.00 3.41
2976 4404 2.590575 ACGCCAAACCCGACAGTG 60.591 61.111 0.00 0.00 0.00 3.66
2977 4405 2.280592 GACGCCAAACCCGACAGT 60.281 61.111 0.00 0.00 0.00 3.55
2978 4406 3.411351 CGACGCCAAACCCGACAG 61.411 66.667 0.00 0.00 0.00 3.51
2979 4407 4.973055 CCGACGCCAAACCCGACA 62.973 66.667 0.00 0.00 0.00 4.35
2983 4411 3.733960 GAAGCCGACGCCAAACCC 61.734 66.667 0.00 0.00 34.57 4.11
3002 4430 1.696097 TTTAGAGGGATGGCCGGAGC 61.696 60.000 5.05 0.00 38.76 4.70
3003 4431 0.394565 CTTTAGAGGGATGGCCGGAG 59.605 60.000 5.05 0.00 33.83 4.63
3004 4432 1.696097 GCTTTAGAGGGATGGCCGGA 61.696 60.000 5.05 0.00 33.83 5.14
3005 4433 1.227973 GCTTTAGAGGGATGGCCGG 60.228 63.158 0.00 0.00 33.83 6.13
3006 4434 1.227973 GGCTTTAGAGGGATGGCCG 60.228 63.158 0.00 0.00 33.83 6.13
3007 4435 1.227973 CGGCTTTAGAGGGATGGCC 60.228 63.158 0.00 0.00 36.60 5.36
3008 4436 1.227973 CCGGCTTTAGAGGGATGGC 60.228 63.158 0.00 0.00 0.00 4.40
3009 4437 1.227973 GCCGGCTTTAGAGGGATGG 60.228 63.158 22.15 0.00 0.00 3.51
3010 4438 1.595382 CGCCGGCTTTAGAGGGATG 60.595 63.158 26.68 0.00 0.00 3.51
3011 4439 1.335132 TTCGCCGGCTTTAGAGGGAT 61.335 55.000 26.68 0.00 0.00 3.85
3012 4440 1.985662 TTCGCCGGCTTTAGAGGGA 60.986 57.895 26.68 8.76 0.00 4.20
3013 4441 1.814169 GTTCGCCGGCTTTAGAGGG 60.814 63.158 26.68 6.06 0.00 4.30
3014 4442 0.458669 TAGTTCGCCGGCTTTAGAGG 59.541 55.000 26.68 6.92 0.00 3.69
3015 4443 1.557651 GTAGTTCGCCGGCTTTAGAG 58.442 55.000 26.68 7.77 0.00 2.43
3016 4444 0.174162 GGTAGTTCGCCGGCTTTAGA 59.826 55.000 26.68 11.72 0.00 2.10
3017 4445 0.808847 GGGTAGTTCGCCGGCTTTAG 60.809 60.000 26.68 9.07 0.00 1.85
3018 4446 1.218854 GGGTAGTTCGCCGGCTTTA 59.781 57.895 26.68 6.92 0.00 1.85
3019 4447 2.046604 GGGTAGTTCGCCGGCTTT 60.047 61.111 26.68 9.47 0.00 3.51
3020 4448 4.446413 CGGGTAGTTCGCCGGCTT 62.446 66.667 26.68 9.85 0.00 4.35
3033 4461 4.324267 CAAGTTTACCAGAGAAATCGGGT 58.676 43.478 5.43 5.43 37.43 5.28
3034 4462 3.127030 GCAAGTTTACCAGAGAAATCGGG 59.873 47.826 0.00 0.00 0.00 5.14
3037 4465 4.082733 GGGTGCAAGTTTACCAGAGAAATC 60.083 45.833 8.03 0.00 38.74 2.17
3042 4470 1.534729 GGGGTGCAAGTTTACCAGAG 58.465 55.000 8.03 0.00 38.74 3.35
3044 4472 0.178975 TGGGGGTGCAAGTTTACCAG 60.179 55.000 8.03 0.00 38.74 4.00
3045 4473 0.178975 CTGGGGGTGCAAGTTTACCA 60.179 55.000 8.03 0.00 38.74 3.25
3046 4474 1.532604 GCTGGGGGTGCAAGTTTACC 61.533 60.000 0.00 0.00 36.21 2.85
3048 4476 0.114168 ATGCTGGGGGTGCAAGTTTA 59.886 50.000 0.00 0.00 44.01 2.01
3049 4477 1.152269 ATGCTGGGGGTGCAAGTTT 60.152 52.632 0.00 0.00 44.01 2.66
3051 4479 2.036256 GATGCTGGGGGTGCAAGT 59.964 61.111 0.00 0.00 44.01 3.16
3053 4481 1.496444 TAGTGATGCTGGGGGTGCAA 61.496 55.000 0.00 0.00 44.01 4.08
3054 4482 1.496444 TTAGTGATGCTGGGGGTGCA 61.496 55.000 0.00 0.00 44.95 4.57
3063 4491 5.304101 CCTCTTGGTCTATCTTAGTGATGCT 59.696 44.000 0.00 0.00 36.65 3.79
3082 4510 2.759795 GGGAAGCAGCACCCTCTT 59.240 61.111 17.36 0.00 42.56 2.85
3088 4516 2.467826 GCTCATCGGGAAGCAGCAC 61.468 63.158 0.00 0.00 0.00 4.40
3089 4517 2.124983 GCTCATCGGGAAGCAGCA 60.125 61.111 0.00 0.00 0.00 4.41
3119 4548 0.385390 CAAAGCATTATGGCGGGGAC 59.615 55.000 0.00 0.00 39.27 4.46
3120 4549 1.391157 GCAAAGCATTATGGCGGGGA 61.391 55.000 0.00 0.00 39.27 4.81
3124 4688 0.249155 CCTGGCAAAGCATTATGGCG 60.249 55.000 0.00 0.00 44.38 5.69
3127 4691 4.402155 TCCTTTACCTGGCAAAGCATTATG 59.598 41.667 13.01 0.43 32.69 1.90
3161 4725 6.442112 TGAAACATGTCGATGCAAAATTACA 58.558 32.000 0.00 0.00 32.14 2.41
3162 4726 6.582295 ACTGAAACATGTCGATGCAAAATTAC 59.418 34.615 0.00 0.00 32.14 1.89
3164 4728 5.403166 CACTGAAACATGTCGATGCAAAATT 59.597 36.000 0.00 0.00 32.14 1.82
3165 4729 4.919168 CACTGAAACATGTCGATGCAAAAT 59.081 37.500 0.00 0.00 32.14 1.82
3166 4730 4.202000 ACACTGAAACATGTCGATGCAAAA 60.202 37.500 0.00 0.00 32.14 2.44
3167 4731 3.314913 ACACTGAAACATGTCGATGCAAA 59.685 39.130 0.00 0.00 32.14 3.68
3168 4732 2.877786 ACACTGAAACATGTCGATGCAA 59.122 40.909 0.00 0.00 32.14 4.08
3169 4733 2.480037 GACACTGAAACATGTCGATGCA 59.520 45.455 0.00 0.00 36.20 3.96
3170 4734 3.109230 GACACTGAAACATGTCGATGC 57.891 47.619 0.00 0.00 36.20 3.91
3184 4761 0.458543 ATAGCCAGAACGCGACACTG 60.459 55.000 15.93 17.86 0.00 3.66
3187 4764 0.457853 GTCATAGCCAGAACGCGACA 60.458 55.000 15.93 0.00 0.00 4.35
3200 4777 7.878477 AATCAACAATTGCAACAAGTCATAG 57.122 32.000 0.00 0.00 0.00 2.23
3227 4804 6.016213 TGTTCAACGACATTGCTAGTAGTA 57.984 37.500 0.00 0.00 38.29 1.82
3229 4806 4.923871 ACTGTTCAACGACATTGCTAGTAG 59.076 41.667 0.00 0.00 38.29 2.57
3230 4807 4.878439 ACTGTTCAACGACATTGCTAGTA 58.122 39.130 0.00 0.00 38.29 1.82
3231 4808 3.728845 ACTGTTCAACGACATTGCTAGT 58.271 40.909 0.00 0.00 38.29 2.57
3232 4809 4.457810 CAACTGTTCAACGACATTGCTAG 58.542 43.478 0.00 0.00 38.29 3.42
3269 4846 2.434884 CAGGCGTGCAGGGTGTAG 60.435 66.667 8.72 0.00 0.00 2.74
3292 4869 1.440850 CGTAGAACGCGACACCGAA 60.441 57.895 15.93 0.00 33.65 4.30
3356 4934 3.020984 TGTTTGGTTTGTTCTCCAGGTC 58.979 45.455 0.00 0.00 35.05 3.85
3383 4961 5.003778 CGTACGTACGGTTTCTTCTTATTGG 59.996 44.000 34.54 5.67 45.30 3.16
3384 4962 6.001502 CGTACGTACGGTTTCTTCTTATTG 57.998 41.667 34.54 6.03 45.30 1.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.