Multiple sequence alignment - TraesCS5D01G475600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G475600 chr5D 100.000 2767 0 0 1 2767 515095393 515092627 0.000000e+00 5110
1 TraesCS5D01G475600 chr5D 94.009 701 34 6 932 1628 515039821 515039125 0.000000e+00 1055
2 TraesCS5D01G475600 chr5D 90.683 161 11 3 1789 1948 515039032 515038875 7.760000e-51 211
3 TraesCS5D01G475600 chr2D 92.928 707 39 7 930 1630 534129238 534129939 0.000000e+00 1018
4 TraesCS5D01G475600 chr2D 93.740 607 37 1 1024 1630 534122862 534123467 0.000000e+00 909
5 TraesCS5D01G475600 chr2D 83.700 454 56 8 2326 2767 534124895 534125342 1.980000e-111 412
6 TraesCS5D01G475600 chr2D 85.577 208 16 6 1749 1948 534129998 534130199 3.610000e-49 206
7 TraesCS5D01G475600 chr2D 85.906 149 11 4 1787 1930 633258520 633258377 1.720000e-32 150
8 TraesCS5D01G475600 chr2D 85.906 149 11 4 1787 1930 633285875 633285732 1.720000e-32 150
9 TraesCS5D01G475600 chr2B 89.890 821 40 14 1132 1948 634644061 634644842 0.000000e+00 1016
10 TraesCS5D01G475600 chr2B 91.036 714 43 11 932 1630 776645938 776645231 0.000000e+00 944
11 TraesCS5D01G475600 chr2B 83.448 145 14 9 104 245 4000796 4000659 2.890000e-25 126
12 TraesCS5D01G475600 chr2B 89.000 100 7 4 104 200 4098914 4098816 1.350000e-23 121
13 TraesCS5D01G475600 chr2B 89.000 100 7 4 104 200 4270264 4270166 1.350000e-23 121
14 TraesCS5D01G475600 chr2B 89.000 100 7 4 104 200 4363607 4363509 1.350000e-23 121
15 TraesCS5D01G475600 chr2B 89.583 96 7 3 107 200 4411972 4411878 4.840000e-23 119
16 TraesCS5D01G475600 chr5A 92.666 709 36 11 932 1629 643312218 643311515 0.000000e+00 1007
17 TraesCS5D01G475600 chr5A 89.109 101 6 3 104 200 131677620 131677719 1.350000e-23 121
18 TraesCS5D01G475600 chr7B 84.527 1047 109 35 861 1880 113445773 113444753 0.000000e+00 987
19 TraesCS5D01G475600 chr7B 88.119 101 7 4 104 200 723878099 723878198 6.260000e-22 115
20 TraesCS5D01G475600 chr7A 89.597 769 70 8 859 1624 151328330 151327569 0.000000e+00 968
21 TraesCS5D01G475600 chr7A 91.000 100 4 4 104 200 650629655 650629752 2.240000e-26 130
22 TraesCS5D01G475600 chr7D 88.731 772 74 11 859 1624 151542825 151542061 0.000000e+00 931
23 TraesCS5D01G475600 chr7D 81.280 422 60 10 303 713 151543523 151543110 9.560000e-85 324
24 TraesCS5D01G475600 chr6B 88.636 704 34 11 932 1628 33037855 33038519 0.000000e+00 815
25 TraesCS5D01G475600 chr4A 84.286 630 66 27 1334 1948 639977762 639978373 3.970000e-163 584
26 TraesCS5D01G475600 chr4A 85.090 389 43 8 2393 2767 639979125 639979512 1.550000e-102 383
27 TraesCS5D01G475600 chr2A 89.617 183 13 3 1748 1930 677828410 677828586 7.710000e-56 228
28 TraesCS5D01G475600 chr6D 87.654 162 15 2 1787 1948 20474532 20474376 1.690000e-42 183
29 TraesCS5D01G475600 chr5B 87.500 160 11 6 1789 1948 647878819 647878669 2.830000e-40 176
30 TraesCS5D01G475600 chr1A 88.119 101 7 5 104 200 61703015 61703114 6.260000e-22 115


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G475600 chr5D 515092627 515095393 2766 True 5110.00 5110 100.00000 1 2767 1 chr5D.!!$R1 2766
1 TraesCS5D01G475600 chr5D 515038875 515039821 946 True 633.00 1055 92.34600 932 1948 2 chr5D.!!$R2 1016
2 TraesCS5D01G475600 chr2D 534122862 534130199 7337 False 636.25 1018 88.98625 930 2767 4 chr2D.!!$F1 1837
3 TraesCS5D01G475600 chr2B 634644061 634644842 781 False 1016.00 1016 89.89000 1132 1948 1 chr2B.!!$F1 816
4 TraesCS5D01G475600 chr2B 776645231 776645938 707 True 944.00 944 91.03600 932 1630 1 chr2B.!!$R6 698
5 TraesCS5D01G475600 chr5A 643311515 643312218 703 True 1007.00 1007 92.66600 932 1629 1 chr5A.!!$R1 697
6 TraesCS5D01G475600 chr7B 113444753 113445773 1020 True 987.00 987 84.52700 861 1880 1 chr7B.!!$R1 1019
7 TraesCS5D01G475600 chr7A 151327569 151328330 761 True 968.00 968 89.59700 859 1624 1 chr7A.!!$R1 765
8 TraesCS5D01G475600 chr7D 151542061 151543523 1462 True 627.50 931 85.00550 303 1624 2 chr7D.!!$R1 1321
9 TraesCS5D01G475600 chr6B 33037855 33038519 664 False 815.00 815 88.63600 932 1628 1 chr6B.!!$F1 696
10 TraesCS5D01G475600 chr4A 639977762 639979512 1750 False 483.50 584 84.68800 1334 2767 2 chr4A.!!$F1 1433

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
602 612 0.034896 TCGCTCCTCCTTTGTTGTCC 59.965 55.0 0.0 0.0 0.0 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2032 7639 0.038892 TGGTCGGCGTCAAGACTAAC 60.039 55.0 6.85 0.0 37.52 2.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
69 70 8.090788 AGAATTACAAGTTAGGGAGAATAGCA 57.909 34.615 0.00 0.00 0.00 3.49
70 71 8.718656 AGAATTACAAGTTAGGGAGAATAGCAT 58.281 33.333 0.00 0.00 0.00 3.79
71 72 8.910351 AATTACAAGTTAGGGAGAATAGCATC 57.090 34.615 0.00 0.00 0.00 3.91
72 73 7.676683 TTACAAGTTAGGGAGAATAGCATCT 57.323 36.000 0.00 0.00 0.00 2.90
73 74 8.777578 TTACAAGTTAGGGAGAATAGCATCTA 57.222 34.615 0.00 0.00 0.00 1.98
74 75 7.863901 ACAAGTTAGGGAGAATAGCATCTAT 57.136 36.000 0.00 0.00 0.00 1.98
75 76 8.268878 ACAAGTTAGGGAGAATAGCATCTATT 57.731 34.615 0.00 0.00 0.00 1.73
76 77 8.718656 ACAAGTTAGGGAGAATAGCATCTATTT 58.281 33.333 1.19 0.00 0.00 1.40
77 78 9.566432 CAAGTTAGGGAGAATAGCATCTATTTT 57.434 33.333 1.19 0.00 0.00 1.82
79 80 8.938883 AGTTAGGGAGAATAGCATCTATTTTCA 58.061 33.333 14.81 0.00 0.00 2.69
80 81 9.732130 GTTAGGGAGAATAGCATCTATTTTCAT 57.268 33.333 14.81 8.32 0.00 2.57
156 157 9.975218 AATTATACTCACCTTTTGACCTAATGT 57.025 29.630 0.00 0.00 0.00 2.71
157 158 9.975218 ATTATACTCACCTTTTGACCTAATGTT 57.025 29.630 0.00 0.00 0.00 2.71
160 161 9.802039 ATACTCACCTTTTGACCTAATGTTAAA 57.198 29.630 0.00 0.00 31.27 1.52
161 162 8.528044 ACTCACCTTTTGACCTAATGTTAAAA 57.472 30.769 0.00 0.00 39.34 1.52
162 163 8.410912 ACTCACCTTTTGACCTAATGTTAAAAC 58.589 33.333 0.00 0.00 37.47 2.43
163 164 8.528044 TCACCTTTTGACCTAATGTTAAAACT 57.472 30.769 0.00 0.00 37.47 2.66
164 165 8.973182 TCACCTTTTGACCTAATGTTAAAACTT 58.027 29.630 0.00 0.00 37.47 2.66
167 168 9.908152 CCTTTTGACCTAATGTTAAAACTTAGG 57.092 33.333 19.03 19.03 37.47 2.69
219 220 7.747809 ATTTCTCCCTCTCTCTATTTCAACT 57.252 36.000 0.00 0.00 0.00 3.16
220 221 7.560796 TTTCTCCCTCTCTCTATTTCAACTT 57.439 36.000 0.00 0.00 0.00 2.66
224 225 8.061920 TCTCCCTCTCTCTATTTCAACTTATGA 58.938 37.037 0.00 0.00 35.85 2.15
225 226 8.609617 TCCCTCTCTCTATTTCAACTTATGAA 57.390 34.615 0.00 0.00 46.22 2.57
238 239 7.509141 TCAACTTATGAACAGAAAGCATTGA 57.491 32.000 0.00 0.00 34.30 2.57
240 241 9.230122 TCAACTTATGAACAGAAAGCATTGATA 57.770 29.630 0.00 0.00 34.30 2.15
241 242 9.844790 CAACTTATGAACAGAAAGCATTGATAA 57.155 29.630 0.00 0.00 0.00 1.75
243 244 8.680903 ACTTATGAACAGAAAGCATTGATAAGG 58.319 33.333 0.00 0.00 0.00 2.69
245 246 7.893124 ATGAACAGAAAGCATTGATAAGGAT 57.107 32.000 0.00 0.00 0.00 3.24
246 247 7.325660 TGAACAGAAAGCATTGATAAGGATC 57.674 36.000 0.00 0.00 0.00 3.36
247 248 7.114754 TGAACAGAAAGCATTGATAAGGATCT 58.885 34.615 0.00 0.00 32.79 2.75
249 250 7.951347 ACAGAAAGCATTGATAAGGATCTTT 57.049 32.000 0.00 0.00 32.79 2.52
250 251 7.994194 ACAGAAAGCATTGATAAGGATCTTTC 58.006 34.615 0.00 0.00 38.59 2.62
251 252 7.613022 ACAGAAAGCATTGATAAGGATCTTTCA 59.387 33.333 12.43 0.00 39.92 2.69
252 253 8.630917 CAGAAAGCATTGATAAGGATCTTTCAT 58.369 33.333 12.43 0.00 39.92 2.57
253 254 9.198475 AGAAAGCATTGATAAGGATCTTTCATT 57.802 29.630 12.43 0.00 39.92 2.57
254 255 9.813446 GAAAGCATTGATAAGGATCTTTCATTT 57.187 29.630 0.00 0.00 38.34 2.32
257 258 9.813446 AGCATTGATAAGGATCTTTCATTTTTC 57.187 29.630 0.00 0.00 32.79 2.29
258 259 9.813446 GCATTGATAAGGATCTTTCATTTTTCT 57.187 29.630 0.00 0.00 32.79 2.52
265 266 8.820153 AAGGATCTTTCATTTTTCTCTATGCT 57.180 30.769 0.00 0.00 0.00 3.79
266 267 8.223177 AGGATCTTTCATTTTTCTCTATGCTG 57.777 34.615 0.00 0.00 0.00 4.41
268 269 8.848182 GGATCTTTCATTTTTCTCTATGCTGAT 58.152 33.333 0.00 0.00 0.00 2.90
280 281 6.850555 TCTCTATGCTGATATGATCTTGACG 58.149 40.000 0.00 0.00 0.00 4.35
281 282 6.656693 TCTCTATGCTGATATGATCTTGACGA 59.343 38.462 0.00 0.00 0.00 4.20
282 283 6.850555 TCTATGCTGATATGATCTTGACGAG 58.149 40.000 0.00 0.00 0.00 4.18
283 284 5.718724 ATGCTGATATGATCTTGACGAGA 57.281 39.130 0.00 0.00 39.13 4.04
284 285 5.520376 TGCTGATATGATCTTGACGAGAA 57.480 39.130 0.00 0.00 38.06 2.87
285 286 6.094193 TGCTGATATGATCTTGACGAGAAT 57.906 37.500 0.00 0.00 38.06 2.40
286 287 6.519382 TGCTGATATGATCTTGACGAGAATT 58.481 36.000 0.00 0.00 38.06 2.17
287 288 6.423001 TGCTGATATGATCTTGACGAGAATTG 59.577 38.462 0.00 0.00 38.06 2.32
288 289 6.128607 GCTGATATGATCTTGACGAGAATTGG 60.129 42.308 0.00 0.00 38.06 3.16
289 290 6.226052 TGATATGATCTTGACGAGAATTGGG 58.774 40.000 0.00 0.00 38.06 4.12
290 291 4.760530 ATGATCTTGACGAGAATTGGGA 57.239 40.909 0.00 0.00 38.06 4.37
291 292 4.551702 TGATCTTGACGAGAATTGGGAA 57.448 40.909 0.00 0.00 38.06 3.97
293 294 4.020218 TGATCTTGACGAGAATTGGGAAGT 60.020 41.667 0.00 0.00 38.06 3.01
294 295 4.351874 TCTTGACGAGAATTGGGAAGTT 57.648 40.909 0.00 0.00 0.00 2.66
295 296 4.315803 TCTTGACGAGAATTGGGAAGTTC 58.684 43.478 0.00 0.00 0.00 3.01
297 298 4.079980 TGACGAGAATTGGGAAGTTCAA 57.920 40.909 5.01 0.00 0.00 2.69
300 301 4.911390 ACGAGAATTGGGAAGTTCAATCT 58.089 39.130 5.01 0.52 34.15 2.40
301 302 6.049955 ACGAGAATTGGGAAGTTCAATCTA 57.950 37.500 5.01 0.00 34.15 1.98
307 308 7.394641 AGAATTGGGAAGTTCAATCTAGAAACC 59.605 37.037 5.01 0.00 34.15 3.27
309 310 4.285003 TGGGAAGTTCAATCTAGAAACCGA 59.715 41.667 5.01 0.00 0.00 4.69
318 319 1.065636 TCTAGAAACCGAGGAGAGCGA 60.066 52.381 0.00 0.00 0.00 4.93
321 322 1.919956 GAAACCGAGGAGAGCGACGA 61.920 60.000 0.00 0.00 0.00 4.20
322 323 1.924320 AAACCGAGGAGAGCGACGAG 61.924 60.000 0.00 0.00 0.00 4.18
332 333 2.049063 GCGACGAGGAAGCTGTGT 60.049 61.111 0.00 0.00 0.00 3.72
352 353 1.617947 AATCCTCGCTCTGGTCACCC 61.618 60.000 0.00 0.00 0.00 4.61
360 361 0.631753 CTCTGGTCACCCTCCTCCTA 59.368 60.000 0.00 0.00 0.00 2.94
361 362 1.007238 CTCTGGTCACCCTCCTCCTAA 59.993 57.143 0.00 0.00 0.00 2.69
362 363 1.007238 TCTGGTCACCCTCCTCCTAAG 59.993 57.143 0.00 0.00 0.00 2.18
370 371 3.462579 CACCCTCCTCCTAAGTACCTCTA 59.537 52.174 0.00 0.00 0.00 2.43
373 374 4.264038 CCCTCCTCCTAAGTACCTCTATCC 60.264 54.167 0.00 0.00 0.00 2.59
386 387 0.531532 TCTATCCCCTCGTCGTCGTC 60.532 60.000 1.33 0.00 38.33 4.20
415 416 2.415608 CCGTCGCCTAGCTTCCTGA 61.416 63.158 0.00 0.00 0.00 3.86
421 422 1.517832 CCTAGCTTCCTGACACCGG 59.482 63.158 0.00 0.00 0.00 5.28
426 427 1.926511 GCTTCCTGACACCGGCAATG 61.927 60.000 0.00 0.00 0.00 2.82
478 480 1.887242 GGCTTGTGCGTGTGACTGA 60.887 57.895 0.00 0.00 40.82 3.41
485 487 1.218047 GCGTGTGACTGATAGGCCA 59.782 57.895 5.01 0.00 0.00 5.36
487 489 1.858091 CGTGTGACTGATAGGCCATC 58.142 55.000 5.01 6.88 0.00 3.51
500 502 4.720902 CCATCCAGCACGCCCACA 62.721 66.667 0.00 0.00 0.00 4.17
502 504 3.640407 ATCCAGCACGCCCACACT 61.640 61.111 0.00 0.00 0.00 3.55
506 508 2.046892 AGCACGCCCACACTGATC 60.047 61.111 0.00 0.00 0.00 2.92
507 509 2.046892 GCACGCCCACACTGATCT 60.047 61.111 0.00 0.00 0.00 2.75
509 511 1.742880 CACGCCCACACTGATCTGG 60.743 63.158 4.49 0.00 0.00 3.86
511 513 1.003355 CGCCCACACTGATCTGGTT 60.003 57.895 4.49 0.00 0.00 3.67
512 514 0.606401 CGCCCACACTGATCTGGTTT 60.606 55.000 4.49 0.00 0.00 3.27
513 515 1.338674 CGCCCACACTGATCTGGTTTA 60.339 52.381 4.49 0.00 0.00 2.01
514 516 2.680805 CGCCCACACTGATCTGGTTTAT 60.681 50.000 4.49 0.00 0.00 1.40
519 521 6.428159 GCCCACACTGATCTGGTTTATATTAG 59.572 42.308 4.49 0.00 0.00 1.73
527 529 7.883217 TGATCTGGTTTATATTAGTCGACTCC 58.117 38.462 23.89 14.76 0.00 3.85
528 530 7.504574 TGATCTGGTTTATATTAGTCGACTCCA 59.495 37.037 23.89 18.58 0.00 3.86
550 552 1.422781 CTCCATCATGGCCCACTACAT 59.577 52.381 0.00 0.00 37.47 2.29
579 581 1.375523 GGGAAAGCACCATCGTCGT 60.376 57.895 0.00 0.00 0.00 4.34
602 612 0.034896 TCGCTCCTCCTTTGTTGTCC 59.965 55.000 0.00 0.00 0.00 4.02
614 624 0.688087 TGTTGTCCCCAAAACCACCC 60.688 55.000 0.00 0.00 30.94 4.61
620 630 1.075836 CCCAAAACCACCCGGATCA 59.924 57.895 0.73 0.00 35.59 2.92
624 634 0.481128 AAAACCACCCGGATCACCTT 59.519 50.000 0.73 0.00 35.59 3.50
630 640 2.969950 CCACCCGGATCACCTTATTCTA 59.030 50.000 0.73 0.00 0.00 2.10
631 641 3.389983 CCACCCGGATCACCTTATTCTAA 59.610 47.826 0.73 0.00 0.00 2.10
650 660 6.392625 TCTAAGGTCATGTATCTGTGTAGC 57.607 41.667 0.00 0.00 0.00 3.58
659 669 3.315470 TGTATCTGTGTAGCGGTGAGATC 59.685 47.826 0.00 0.00 0.00 2.75
662 672 2.099756 TCTGTGTAGCGGTGAGATCATG 59.900 50.000 0.00 0.00 0.00 3.07
664 674 2.233676 TGTGTAGCGGTGAGATCATGTT 59.766 45.455 0.00 0.00 0.00 2.71
673 684 4.557205 GGTGAGATCATGTTACCGGTATC 58.443 47.826 16.67 15.51 0.00 2.24
686 697 1.278172 CGGTATCTCTCGGCATTGCG 61.278 60.000 1.91 0.00 0.00 4.85
705 716 3.405170 CGCAGCAGGGTAAACATTTAG 57.595 47.619 0.00 0.00 0.00 1.85
706 717 2.747446 CGCAGCAGGGTAAACATTTAGT 59.253 45.455 0.00 0.00 0.00 2.24
707 718 3.181510 CGCAGCAGGGTAAACATTTAGTC 60.182 47.826 0.00 0.00 0.00 2.59
709 720 4.331968 CAGCAGGGTAAACATTTAGTCCA 58.668 43.478 0.00 0.00 0.00 4.02
711 722 4.042934 AGCAGGGTAAACATTTAGTCCAGT 59.957 41.667 0.00 0.00 0.00 4.00
715 726 7.040271 GCAGGGTAAACATTTAGTCCAGTTTTA 60.040 37.037 0.00 0.00 35.90 1.52
716 727 8.512138 CAGGGTAAACATTTAGTCCAGTTTTAG 58.488 37.037 0.00 0.00 35.90 1.85
727 738 9.537852 TTTAGTCCAGTTTTAGATAGTACCAGA 57.462 33.333 0.00 0.00 0.00 3.86
731 742 7.975058 GTCCAGTTTTAGATAGTACCAGACTTC 59.025 40.741 0.00 0.00 39.81 3.01
732 743 7.672660 TCCAGTTTTAGATAGTACCAGACTTCA 59.327 37.037 0.00 0.00 39.81 3.02
733 744 8.478877 CCAGTTTTAGATAGTACCAGACTTCAT 58.521 37.037 0.00 0.00 39.81 2.57
740 755 8.006298 AGATAGTACCAGACTTCATCTTCAAG 57.994 38.462 0.00 0.00 39.81 3.02
762 891 9.677567 TCAAGAAAAATAAAAGTTGAAGATCGG 57.322 29.630 0.00 0.00 0.00 4.18
779 908 5.057149 AGATCGGCTTACCAATCATTGTAC 58.943 41.667 0.00 0.00 34.57 2.90
780 909 3.191669 TCGGCTTACCAATCATTGTACG 58.808 45.455 0.00 0.00 34.57 3.67
781 910 2.933906 CGGCTTACCAATCATTGTACGT 59.066 45.455 0.00 0.00 34.57 3.57
782 911 3.242284 CGGCTTACCAATCATTGTACGTG 60.242 47.826 0.00 0.00 34.57 4.49
783 912 3.486875 GGCTTACCAATCATTGTACGTGC 60.487 47.826 0.00 0.00 35.26 5.34
784 913 3.486875 GCTTACCAATCATTGTACGTGCC 60.487 47.826 0.00 0.00 0.00 5.01
785 914 2.192664 ACCAATCATTGTACGTGCCA 57.807 45.000 0.00 0.00 0.00 4.92
786 915 2.722094 ACCAATCATTGTACGTGCCAT 58.278 42.857 0.00 0.00 0.00 4.40
788 917 4.265893 ACCAATCATTGTACGTGCCATAA 58.734 39.130 0.00 0.00 0.00 1.90
789 918 4.887071 ACCAATCATTGTACGTGCCATAAT 59.113 37.500 0.00 0.00 0.00 1.28
790 919 6.058833 ACCAATCATTGTACGTGCCATAATA 58.941 36.000 0.00 0.00 0.00 0.98
791 920 6.017440 ACCAATCATTGTACGTGCCATAATAC 60.017 38.462 0.00 0.00 0.00 1.89
792 921 6.370593 CAATCATTGTACGTGCCATAATACC 58.629 40.000 0.00 0.00 0.00 2.73
793 922 4.382291 TCATTGTACGTGCCATAATACCC 58.618 43.478 0.00 0.00 0.00 3.69
794 923 4.101898 TCATTGTACGTGCCATAATACCCT 59.898 41.667 0.00 0.00 0.00 4.34
795 924 3.738830 TGTACGTGCCATAATACCCTC 57.261 47.619 0.00 0.00 0.00 4.30
796 925 2.034939 TGTACGTGCCATAATACCCTCG 59.965 50.000 0.00 0.00 0.00 4.63
801 931 0.685097 GCCATAATACCCTCGCCTCA 59.315 55.000 0.00 0.00 0.00 3.86
839 969 4.440250 CGCTGTGCTTTGTATAGGACTAGT 60.440 45.833 0.00 0.00 37.38 2.57
840 970 5.220989 CGCTGTGCTTTGTATAGGACTAGTA 60.221 44.000 0.00 0.00 37.38 1.82
852 982 9.265901 TGTATAGGACTAGTATAGACACGTTTC 57.734 37.037 9.76 0.00 42.77 2.78
898 1051 2.022195 TCAAACCCGAGTCTAGATCCG 58.978 52.381 0.00 2.66 0.00 4.18
910 1063 3.124806 GTCTAGATCCGCGATGAATACGA 59.875 47.826 8.23 0.00 0.00 3.43
916 1069 1.395670 CGCGATGAATACGACACGAT 58.604 50.000 0.00 0.00 0.00 3.73
917 1070 1.779157 CGCGATGAATACGACACGATT 59.221 47.619 0.00 0.00 0.00 3.34
923 1076 6.011277 CGATGAATACGACACGATTACGATA 58.989 40.000 0.00 0.00 42.66 2.92
979 6428 2.070573 ACGGCCCCAATAAATATCCCT 58.929 47.619 0.00 0.00 0.00 4.20
990 6443 0.843984 AATATCCCTGGTTCCCCACG 59.156 55.000 0.00 0.00 35.17 4.94
995 6451 3.006728 CTGGTTCCCCACGCCCTA 61.007 66.667 0.00 0.00 35.17 3.53
996 6452 3.006728 TGGTTCCCCACGCCCTAG 61.007 66.667 0.00 0.00 35.17 3.02
998 6454 4.484872 GTTCCCCACGCCCTAGCC 62.485 72.222 0.00 0.00 34.57 3.93
1016 6473 2.427410 CACGCACGCAAAGAAGCC 60.427 61.111 0.00 0.00 0.00 4.35
1028 6485 2.695147 CAAAGAAGCCCCTGTGTCTTTT 59.305 45.455 0.00 0.00 38.05 2.27
1037 6494 1.264288 CCTGTGTCTTTTGTTCGCTCC 59.736 52.381 0.00 0.00 0.00 4.70
1090 6561 2.506472 GCCTCCCAATCCTCCGAC 59.494 66.667 0.00 0.00 0.00 4.79
1472 6966 4.072131 GCAAACTACCTCAACATCAAGGA 58.928 43.478 0.00 0.00 36.46 3.36
1680 7244 8.543862 ACTTCGTATCATCGTATGTCTATGTA 57.456 34.615 0.00 0.00 0.00 2.29
1706 7270 1.666189 GCTGCCTTTTCTATGTCGTCC 59.334 52.381 0.00 0.00 0.00 4.79
1732 7296 7.578310 AGTGCTAGTGGTCGTAATTATTCTA 57.422 36.000 0.00 0.00 0.00 2.10
1738 7302 7.876936 AGTGGTCGTAATTATTCTAGAGTCA 57.123 36.000 0.00 0.00 0.00 3.41
1777 7342 2.096013 GCAAGAAGAAACCTATCGTGGC 59.904 50.000 0.00 0.00 0.00 5.01
1807 7380 7.174253 TGGTCATTACCTGTGAAACTGAATTAC 59.826 37.037 0.00 0.00 46.91 1.89
1855 7428 5.068591 TGCTTCGTAACATCATCCTTAGCTA 59.931 40.000 0.00 0.00 0.00 3.32
1949 7523 8.319143 TCTACAGGTTTGCTAAAGATTTGTAC 57.681 34.615 0.00 0.00 0.00 2.90
1950 7524 8.154856 TCTACAGGTTTGCTAAAGATTTGTACT 58.845 33.333 0.00 0.00 0.00 2.73
1951 7525 7.203255 ACAGGTTTGCTAAAGATTTGTACTC 57.797 36.000 0.00 0.00 0.00 2.59
1953 7527 7.284489 ACAGGTTTGCTAAAGATTTGTACTCAA 59.716 33.333 0.00 0.00 0.00 3.02
1957 7531 8.905702 GTTTGCTAAAGATTTGTACTCAACATG 58.094 33.333 0.00 0.00 38.10 3.21
1958 7532 6.611381 TGCTAAAGATTTGTACTCAACATGC 58.389 36.000 0.00 0.00 38.10 4.06
1959 7533 6.206438 TGCTAAAGATTTGTACTCAACATGCA 59.794 34.615 0.00 0.00 38.10 3.96
1961 7535 5.376854 AAGATTTGTACTCAACATGCACC 57.623 39.130 0.00 0.00 38.10 5.01
1962 7536 4.397420 AGATTTGTACTCAACATGCACCA 58.603 39.130 0.00 0.00 38.10 4.17
1963 7537 4.456911 AGATTTGTACTCAACATGCACCAG 59.543 41.667 0.00 0.00 38.10 4.00
1964 7538 1.522668 TGTACTCAACATGCACCAGC 58.477 50.000 0.00 0.00 35.42 4.85
1965 7539 4.246025 TTTGTACTCAACATGCACCAGCA 61.246 43.478 0.00 0.00 43.54 4.41
1974 7548 4.565531 GCACCAGCAGCATTTGTC 57.434 55.556 0.00 0.00 41.58 3.18
1976 7550 1.808531 GCACCAGCAGCATTTGTCCA 61.809 55.000 0.00 0.00 41.58 4.02
1977 7551 0.892755 CACCAGCAGCATTTGTCCAT 59.107 50.000 0.00 0.00 0.00 3.41
1978 7552 1.135199 CACCAGCAGCATTTGTCCATC 60.135 52.381 0.00 0.00 0.00 3.51
1979 7553 0.099968 CCAGCAGCATTTGTCCATCG 59.900 55.000 0.00 0.00 0.00 3.84
1980 7554 0.524816 CAGCAGCATTTGTCCATCGC 60.525 55.000 0.00 0.00 0.00 4.58
1981 7555 1.584483 GCAGCATTTGTCCATCGCG 60.584 57.895 0.00 0.00 0.00 5.87
1982 7556 1.584483 CAGCATTTGTCCATCGCGC 60.584 57.895 0.00 0.00 0.00 6.86
1984 7558 2.023181 CATTTGTCCATCGCGCGG 59.977 61.111 31.69 15.09 0.00 6.46
2005 7612 2.103340 GGGCGCGTGTTTGTTGTT 59.897 55.556 8.43 0.00 0.00 2.83
2008 7615 0.024364 GGCGCGTGTTTGTTGTTTTG 59.976 50.000 8.43 0.00 0.00 2.44
2009 7616 0.711118 GCGCGTGTTTGTTGTTTTGT 59.289 45.000 8.43 0.00 0.00 2.83
2019 7626 6.091034 GTGTTTGTTGTTTTGTTTCGGGTTAT 59.909 34.615 0.00 0.00 0.00 1.89
2020 7627 7.275123 GTGTTTGTTGTTTTGTTTCGGGTTATA 59.725 33.333 0.00 0.00 0.00 0.98
2028 7635 2.428171 TGTTTCGGGTTATAGGTCTCCG 59.572 50.000 0.00 0.00 41.80 4.63
2031 7638 1.421268 TCGGGTTATAGGTCTCCGCTA 59.579 52.381 0.00 0.00 40.42 4.26
2032 7639 1.811359 CGGGTTATAGGTCTCCGCTAG 59.189 57.143 0.00 0.00 34.17 3.42
2034 7641 3.229293 GGGTTATAGGTCTCCGCTAGTT 58.771 50.000 0.00 0.00 0.00 2.24
2036 7643 4.458642 GGGTTATAGGTCTCCGCTAGTTAG 59.541 50.000 0.00 0.00 0.00 2.34
2037 7644 5.069318 GGTTATAGGTCTCCGCTAGTTAGT 58.931 45.833 0.00 0.00 0.00 2.24
2039 7646 4.710313 ATAGGTCTCCGCTAGTTAGTCT 57.290 45.455 0.00 0.00 0.00 3.24
2040 7647 3.369242 AGGTCTCCGCTAGTTAGTCTT 57.631 47.619 0.00 0.00 0.00 3.01
2041 7648 3.018149 AGGTCTCCGCTAGTTAGTCTTG 58.982 50.000 0.00 0.00 0.00 3.02
2042 7649 3.015327 GGTCTCCGCTAGTTAGTCTTGA 58.985 50.000 0.00 0.00 0.00 3.02
2043 7650 3.181498 GGTCTCCGCTAGTTAGTCTTGAC 60.181 52.174 0.00 0.00 0.00 3.18
2044 7651 2.676839 TCTCCGCTAGTTAGTCTTGACG 59.323 50.000 0.00 0.00 0.00 4.35
2045 7652 1.131883 TCCGCTAGTTAGTCTTGACGC 59.868 52.381 0.00 0.00 0.00 5.19
2046 7653 1.546834 CGCTAGTTAGTCTTGACGCC 58.453 55.000 0.00 0.00 0.00 5.68
2047 7654 1.546834 GCTAGTTAGTCTTGACGCCG 58.453 55.000 0.00 0.00 0.00 6.46
2048 7655 1.131883 GCTAGTTAGTCTTGACGCCGA 59.868 52.381 0.00 0.00 0.00 5.54
2049 7656 2.783333 CTAGTTAGTCTTGACGCCGAC 58.217 52.381 0.00 0.00 0.00 4.79
2050 7657 0.243095 AGTTAGTCTTGACGCCGACC 59.757 55.000 0.00 0.00 0.00 4.79
2051 7658 0.038892 GTTAGTCTTGACGCCGACCA 60.039 55.000 0.00 0.00 0.00 4.02
2052 7659 0.242825 TTAGTCTTGACGCCGACCAG 59.757 55.000 0.00 0.00 0.00 4.00
2053 7660 1.592400 TAGTCTTGACGCCGACCAGG 61.592 60.000 0.00 0.00 44.97 4.45
2054 7661 2.915659 TCTTGACGCCGACCAGGT 60.916 61.111 0.00 0.00 43.70 4.00
2055 7662 2.432628 CTTGACGCCGACCAGGTC 60.433 66.667 9.92 9.92 43.70 3.85
2056 7663 3.934391 CTTGACGCCGACCAGGTCC 62.934 68.421 14.46 0.00 43.70 4.46
2061 7668 4.410400 GCCGACCAGGTCCCCAAG 62.410 72.222 14.46 0.00 43.70 3.61
2062 7669 2.606519 CCGACCAGGTCCCCAAGA 60.607 66.667 14.46 0.00 34.51 3.02
2063 7670 1.995626 CCGACCAGGTCCCCAAGAT 60.996 63.158 14.46 0.00 34.51 2.40
2064 7671 1.522569 CGACCAGGTCCCCAAGATC 59.477 63.158 14.46 0.00 0.00 2.75
2065 7672 0.978146 CGACCAGGTCCCCAAGATCT 60.978 60.000 14.46 0.00 35.82 2.75
2066 7673 1.290134 GACCAGGTCCCCAAGATCTT 58.710 55.000 8.65 0.88 31.67 2.40
2067 7674 0.995024 ACCAGGTCCCCAAGATCTTG 59.005 55.000 25.75 25.75 31.67 3.02
2073 7680 2.427506 GTCCCCAAGATCTTGTGTCAC 58.572 52.381 29.03 17.64 38.85 3.67
2076 7683 3.138283 TCCCCAAGATCTTGTGTCACTTT 59.862 43.478 29.03 0.00 38.85 2.66
2093 7700 1.708680 CTTTGTCGTTTTTGCTAGCGC 59.291 47.619 10.77 0.00 0.00 5.92
2094 7701 0.040781 TTGTCGTTTTTGCTAGCGCC 60.041 50.000 10.77 0.00 34.43 6.53
2095 7702 0.882927 TGTCGTTTTTGCTAGCGCCT 60.883 50.000 10.77 0.00 34.43 5.52
2096 7703 1.073177 GTCGTTTTTGCTAGCGCCTA 58.927 50.000 10.77 0.00 34.43 3.93
2097 7704 1.060698 GTCGTTTTTGCTAGCGCCTAG 59.939 52.381 10.77 6.65 37.16 3.02
2110 7717 1.858091 CGCCTAGCAAGACAGGTATG 58.142 55.000 0.00 0.00 34.18 2.39
2111 7718 1.409064 CGCCTAGCAAGACAGGTATGA 59.591 52.381 0.00 0.00 34.18 2.15
2112 7719 2.799917 CGCCTAGCAAGACAGGTATGAC 60.800 54.545 0.00 0.00 34.18 3.06
2113 7720 2.799917 GCCTAGCAAGACAGGTATGACG 60.800 54.545 0.00 0.00 34.18 4.35
2114 7721 2.688446 CCTAGCAAGACAGGTATGACGA 59.312 50.000 0.00 0.00 0.00 4.20
2115 7722 2.656560 AGCAAGACAGGTATGACGAC 57.343 50.000 0.00 0.00 0.00 4.34
2116 7723 1.204941 AGCAAGACAGGTATGACGACC 59.795 52.381 0.00 0.00 40.08 4.79
2125 7732 0.751452 GTATGACGACCTTCTCCCCC 59.249 60.000 0.00 0.00 0.00 5.40
2155 7762 2.432628 CTCAGCGTCACCGGGAAC 60.433 66.667 6.32 1.77 33.68 3.62
2168 7775 4.313819 GGAACGTTGTCCCATCCC 57.686 61.111 5.00 0.00 0.00 3.85
2169 7776 1.683441 GGAACGTTGTCCCATCCCT 59.317 57.895 5.00 0.00 0.00 4.20
2170 7777 0.676782 GGAACGTTGTCCCATCCCTG 60.677 60.000 5.00 0.00 0.00 4.45
2171 7778 1.303317 AACGTTGTCCCATCCCTGC 60.303 57.895 0.00 0.00 0.00 4.85
2172 7779 1.779061 AACGTTGTCCCATCCCTGCT 61.779 55.000 0.00 0.00 0.00 4.24
2173 7780 1.450312 CGTTGTCCCATCCCTGCTC 60.450 63.158 0.00 0.00 0.00 4.26
2174 7781 1.685224 GTTGTCCCATCCCTGCTCA 59.315 57.895 0.00 0.00 0.00 4.26
2175 7782 0.678048 GTTGTCCCATCCCTGCTCAC 60.678 60.000 0.00 0.00 0.00 3.51
2176 7783 1.852157 TTGTCCCATCCCTGCTCACC 61.852 60.000 0.00 0.00 0.00 4.02
2177 7784 2.692368 TCCCATCCCTGCTCACCC 60.692 66.667 0.00 0.00 0.00 4.61
2178 7785 3.813724 CCCATCCCTGCTCACCCC 61.814 72.222 0.00 0.00 0.00 4.95
2179 7786 3.813724 CCATCCCTGCTCACCCCC 61.814 72.222 0.00 0.00 0.00 5.40
2201 7808 3.983494 CGAGCGAGGGCCATCGAT 61.983 66.667 41.09 37.05 45.27 3.59
2202 7809 2.423446 GAGCGAGGGCCATCGATT 59.577 61.111 41.09 27.91 42.16 3.34
2206 7813 2.432123 GAGGGCCATCGATTCCCC 59.568 66.667 22.64 20.60 40.97 4.81
2224 7831 1.154035 CCCAATGTTTTCGCTCCGC 60.154 57.895 0.00 0.00 0.00 5.54
2239 7846 1.887707 CCGCGGTAGAAATCCTGCC 60.888 63.158 19.50 0.00 43.36 4.85
2241 7848 1.223487 GCGGTAGAAATCCTGCCCA 59.777 57.895 0.00 0.00 43.84 5.36
2242 7849 0.393808 GCGGTAGAAATCCTGCCCAA 60.394 55.000 0.00 0.00 43.84 4.12
2252 7859 1.668826 TCCTGCCCAAGAACACCTAT 58.331 50.000 0.00 0.00 0.00 2.57
2262 7869 2.200081 AGAACACCTATGCCCATGAGT 58.800 47.619 0.00 0.00 0.00 3.41
2264 7871 2.425143 ACACCTATGCCCATGAGTTG 57.575 50.000 0.00 0.00 0.00 3.16
2298 8175 7.541091 CGTATAGTGTGGATATTACATGGTGAC 59.459 40.741 0.00 0.00 0.00 3.67
2310 8187 3.360867 ACATGGTGACAAGTTTGGTCAA 58.639 40.909 0.00 0.00 45.96 3.18
2313 8190 2.025793 TGGTGACAAGTTTGGTCAAGGA 60.026 45.455 0.00 0.00 45.96 3.36
2314 8191 2.357952 GGTGACAAGTTTGGTCAAGGAC 59.642 50.000 0.00 0.00 45.96 3.85
2316 8193 3.632145 GTGACAAGTTTGGTCAAGGACAT 59.368 43.478 0.00 0.00 45.96 3.06
2317 8194 3.882888 TGACAAGTTTGGTCAAGGACATC 59.117 43.478 0.00 0.00 41.96 3.06
2318 8195 3.222603 ACAAGTTTGGTCAAGGACATCC 58.777 45.455 0.00 0.00 33.68 3.51
2349 8243 5.047802 GGAGTGATTGATTGTGGACATGTTT 60.048 40.000 0.00 0.00 0.00 2.83
2351 8245 4.925054 GTGATTGATTGTGGACATGTTTGG 59.075 41.667 0.00 0.00 0.00 3.28
2354 8248 4.582701 TGATTGTGGACATGTTTGGTTC 57.417 40.909 0.00 0.00 0.00 3.62
2356 8250 2.333688 TGTGGACATGTTTGGTTCGA 57.666 45.000 0.00 0.00 0.00 3.71
2368 8265 8.356657 ACATGTTTGGTTCGATTTTTCTGAATA 58.643 29.630 0.00 0.00 0.00 1.75
2369 8266 9.190858 CATGTTTGGTTCGATTTTTCTGAATAA 57.809 29.630 0.00 0.00 0.00 1.40
2389 8286 8.049117 TGAATAATACAGGCTTGTTTCTCATCT 58.951 33.333 6.84 0.00 38.76 2.90
2391 8288 2.157738 ACAGGCTTGTTTCTCATCTGC 58.842 47.619 0.00 0.00 32.28 4.26
2400 8297 3.071457 TGTTTCTCATCTGCAGTCCTTCA 59.929 43.478 14.67 0.00 0.00 3.02
2402 8299 2.250924 TCTCATCTGCAGTCCTTCACA 58.749 47.619 14.67 0.00 0.00 3.58
2410 8307 1.457346 CAGTCCTTCACATTGGAGCC 58.543 55.000 0.00 0.00 32.36 4.70
2436 8410 8.173775 CACATCTCTGTATGATTGTTCAGTTTC 58.826 37.037 0.00 0.00 31.56 2.78
2437 8411 7.879677 ACATCTCTGTATGATTGTTCAGTTTCA 59.120 33.333 0.00 0.00 34.73 2.69
2441 8415 7.809665 TCTGTATGATTGTTCAGTTTCACATG 58.190 34.615 0.00 0.00 34.73 3.21
2442 8416 7.445096 TCTGTATGATTGTTCAGTTTCACATGT 59.555 33.333 0.00 0.00 34.73 3.21
2447 8421 7.416817 TGATTGTTCAGTTTCACATGTAAGTG 58.583 34.615 0.00 3.84 40.85 3.16
2454 8428 7.026562 TCAGTTTCACATGTAAGTGTTTGTTG 58.973 34.615 13.42 0.00 40.37 3.33
2456 8430 7.701924 CAGTTTCACATGTAAGTGTTTGTTGAT 59.298 33.333 0.00 0.00 40.37 2.57
2457 8431 7.701924 AGTTTCACATGTAAGTGTTTGTTGATG 59.298 33.333 0.00 0.00 40.37 3.07
2461 8435 5.009610 ACATGTAAGTGTTTGTTGATGGACC 59.990 40.000 0.00 0.00 0.00 4.46
2471 8445 1.067635 GTTGATGGACCATGGTTGCAC 60.068 52.381 20.85 11.90 0.00 4.57
2473 8447 0.323725 GATGGACCATGGTTGCACCT 60.324 55.000 20.85 5.51 39.58 4.00
2518 8497 3.006112 TGGCAGAACTAAACACACCAA 57.994 42.857 0.00 0.00 0.00 3.67
2555 8534 4.315803 TCTTTTTCTTAAGTCTCTGGGCG 58.684 43.478 1.63 0.00 0.00 6.13
2579 8558 7.148869 GCGCCCTAAGTTTTATGTTTAAGTTTG 60.149 37.037 0.00 0.00 0.00 2.93
2580 8559 8.077386 CGCCCTAAGTTTTATGTTTAAGTTTGA 58.923 33.333 0.00 0.00 0.00 2.69
2592 8571 8.934023 ATGTTTAAGTTTGACCTTATTCCTCA 57.066 30.769 0.00 0.00 0.00 3.86
2595 8574 9.498176 GTTTAAGTTTGACCTTATTCCTCAGTA 57.502 33.333 0.00 0.00 0.00 2.74
2666 8648 5.487488 TCAGGCTCCCTAAGTTTCTATTCAA 59.513 40.000 0.00 0.00 29.64 2.69
2691 8673 8.966069 ATGTTCTTTCTTCTTTATAGTAGGGC 57.034 34.615 0.00 0.00 0.00 5.19
2763 8745 9.468532 GCTTTCAGAAAGTTCAGTAATTTCAAT 57.531 29.630 21.61 0.00 40.64 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 45 8.090788 TGCTATTCTCCCTAACTTGTAATTCT 57.909 34.615 0.00 0.00 0.00 2.40
46 47 8.718656 AGATGCTATTCTCCCTAACTTGTAATT 58.281 33.333 0.00 0.00 0.00 1.40
47 48 8.268878 AGATGCTATTCTCCCTAACTTGTAAT 57.731 34.615 0.00 0.00 0.00 1.89
49 50 8.958060 ATAGATGCTATTCTCCCTAACTTGTA 57.042 34.615 0.00 0.00 0.00 2.41
50 51 7.863901 ATAGATGCTATTCTCCCTAACTTGT 57.136 36.000 0.00 0.00 0.00 3.16
52 53 9.785982 GAAAATAGATGCTATTCTCCCTAACTT 57.214 33.333 0.00 0.00 0.00 2.66
53 54 8.938883 TGAAAATAGATGCTATTCTCCCTAACT 58.061 33.333 0.00 0.00 0.00 2.24
54 55 9.732130 ATGAAAATAGATGCTATTCTCCCTAAC 57.268 33.333 0.00 0.00 0.00 2.34
58 59 9.507329 TTGTATGAAAATAGATGCTATTCTCCC 57.493 33.333 0.00 0.00 0.00 4.30
130 131 9.975218 ACATTAGGTCAAAAGGTGAGTATAATT 57.025 29.630 0.00 0.00 36.74 1.40
131 132 9.975218 AACATTAGGTCAAAAGGTGAGTATAAT 57.025 29.630 0.00 0.00 36.74 1.28
134 135 9.802039 TTTAACATTAGGTCAAAAGGTGAGTAT 57.198 29.630 0.00 0.00 36.74 2.12
135 136 9.629878 TTTTAACATTAGGTCAAAAGGTGAGTA 57.370 29.630 0.00 0.00 36.74 2.59
136 137 8.410912 GTTTTAACATTAGGTCAAAAGGTGAGT 58.589 33.333 0.00 0.00 36.74 3.41
137 138 8.630037 AGTTTTAACATTAGGTCAAAAGGTGAG 58.370 33.333 0.00 0.00 36.74 3.51
141 142 9.908152 CCTAAGTTTTAACATTAGGTCAAAAGG 57.092 33.333 15.38 0.00 40.38 3.11
193 194 9.445973 AGTTGAAATAGAGAGAGGGAGAAATAT 57.554 33.333 0.00 0.00 0.00 1.28
194 195 8.846423 AGTTGAAATAGAGAGAGGGAGAAATA 57.154 34.615 0.00 0.00 0.00 1.40
195 196 7.747809 AGTTGAAATAGAGAGAGGGAGAAAT 57.252 36.000 0.00 0.00 0.00 2.17
196 197 7.560796 AAGTTGAAATAGAGAGAGGGAGAAA 57.439 36.000 0.00 0.00 0.00 2.52
197 198 8.700051 CATAAGTTGAAATAGAGAGAGGGAGAA 58.300 37.037 0.00 0.00 0.00 2.87
198 199 8.061920 TCATAAGTTGAAATAGAGAGAGGGAGA 58.938 37.037 0.00 0.00 0.00 3.71
199 200 8.243961 TCATAAGTTGAAATAGAGAGAGGGAG 57.756 38.462 0.00 0.00 0.00 4.30
200 201 8.478877 GTTCATAAGTTGAAATAGAGAGAGGGA 58.521 37.037 0.00 0.00 45.71 4.20
202 203 9.311916 CTGTTCATAAGTTGAAATAGAGAGAGG 57.688 37.037 0.00 0.00 45.71 3.69
208 209 9.283768 TGCTTTCTGTTCATAAGTTGAAATAGA 57.716 29.630 0.00 0.00 45.71 1.98
211 212 9.199982 CAATGCTTTCTGTTCATAAGTTGAAAT 57.800 29.630 0.00 0.00 45.71 2.17
212 213 8.412456 TCAATGCTTTCTGTTCATAAGTTGAAA 58.588 29.630 0.00 0.00 45.71 2.69
213 214 7.939782 TCAATGCTTTCTGTTCATAAGTTGAA 58.060 30.769 0.00 0.00 42.09 2.69
215 216 9.844790 TTATCAATGCTTTCTGTTCATAAGTTG 57.155 29.630 0.00 0.00 0.00 3.16
217 218 8.680903 CCTTATCAATGCTTTCTGTTCATAAGT 58.319 33.333 0.00 0.00 0.00 2.24
219 220 8.806429 TCCTTATCAATGCTTTCTGTTCATAA 57.194 30.769 0.00 0.00 0.00 1.90
220 221 8.985315 ATCCTTATCAATGCTTTCTGTTCATA 57.015 30.769 0.00 0.00 0.00 2.15
224 225 7.951347 AAGATCCTTATCAATGCTTTCTGTT 57.049 32.000 0.00 0.00 34.28 3.16
225 226 7.613022 TGAAAGATCCTTATCAATGCTTTCTGT 59.387 33.333 0.30 0.00 39.99 3.41
226 227 7.993101 TGAAAGATCCTTATCAATGCTTTCTG 58.007 34.615 0.30 0.00 39.99 3.02
228 229 9.813446 AAATGAAAGATCCTTATCAATGCTTTC 57.187 29.630 0.00 0.00 39.83 2.62
231 232 9.813446 GAAAAATGAAAGATCCTTATCAATGCT 57.187 29.630 0.00 0.00 34.28 3.79
232 233 9.813446 AGAAAAATGAAAGATCCTTATCAATGC 57.187 29.630 0.00 0.00 34.28 3.56
240 241 8.684520 CAGCATAGAGAAAAATGAAAGATCCTT 58.315 33.333 0.00 0.00 0.00 3.36
241 242 8.051535 TCAGCATAGAGAAAAATGAAAGATCCT 58.948 33.333 0.00 0.00 0.00 3.24
242 243 8.218338 TCAGCATAGAGAAAAATGAAAGATCC 57.782 34.615 0.00 0.00 0.00 3.36
253 254 9.486497 GTCAAGATCATATCAGCATAGAGAAAA 57.514 33.333 0.00 0.00 0.00 2.29
254 255 7.811713 CGTCAAGATCATATCAGCATAGAGAAA 59.188 37.037 0.00 0.00 0.00 2.52
255 256 7.175641 TCGTCAAGATCATATCAGCATAGAGAA 59.824 37.037 0.00 0.00 0.00 2.87
257 258 6.850555 TCGTCAAGATCATATCAGCATAGAG 58.149 40.000 0.00 0.00 0.00 2.43
258 259 6.656693 TCTCGTCAAGATCATATCAGCATAGA 59.343 38.462 0.00 0.00 0.00 1.98
259 260 6.850555 TCTCGTCAAGATCATATCAGCATAG 58.149 40.000 0.00 0.00 0.00 2.23
260 261 6.824305 TCTCGTCAAGATCATATCAGCATA 57.176 37.500 0.00 0.00 0.00 3.14
261 262 5.718724 TCTCGTCAAGATCATATCAGCAT 57.281 39.130 0.00 0.00 0.00 3.79
262 263 5.520376 TTCTCGTCAAGATCATATCAGCA 57.480 39.130 0.00 0.00 32.82 4.41
263 264 6.128607 CCAATTCTCGTCAAGATCATATCAGC 60.129 42.308 0.00 0.00 32.82 4.26
264 265 6.368243 CCCAATTCTCGTCAAGATCATATCAG 59.632 42.308 0.00 0.00 32.82 2.90
265 266 6.041979 TCCCAATTCTCGTCAAGATCATATCA 59.958 38.462 0.00 0.00 32.82 2.15
266 267 6.459066 TCCCAATTCTCGTCAAGATCATATC 58.541 40.000 0.00 0.00 32.82 1.63
268 269 5.869649 TCCCAATTCTCGTCAAGATCATA 57.130 39.130 0.00 0.00 32.82 2.15
270 271 4.020218 ACTTCCCAATTCTCGTCAAGATCA 60.020 41.667 0.00 0.00 32.82 2.92
272 273 4.559862 ACTTCCCAATTCTCGTCAAGAT 57.440 40.909 0.00 0.00 32.82 2.40
273 274 4.202315 TGAACTTCCCAATTCTCGTCAAGA 60.202 41.667 0.00 0.00 0.00 3.02
274 275 4.065088 TGAACTTCCCAATTCTCGTCAAG 58.935 43.478 0.00 0.00 0.00 3.02
275 276 4.079980 TGAACTTCCCAATTCTCGTCAA 57.920 40.909 0.00 0.00 0.00 3.18
276 277 3.762407 TGAACTTCCCAATTCTCGTCA 57.238 42.857 0.00 0.00 0.00 4.35
278 279 4.911390 AGATTGAACTTCCCAATTCTCGT 58.089 39.130 0.00 0.00 34.67 4.18
280 281 8.454894 GTTTCTAGATTGAACTTCCCAATTCTC 58.545 37.037 0.00 0.00 34.67 2.87
281 282 7.394641 GGTTTCTAGATTGAACTTCCCAATTCT 59.605 37.037 0.00 0.00 34.67 2.40
282 283 7.539436 GGTTTCTAGATTGAACTTCCCAATTC 58.461 38.462 0.00 0.00 34.67 2.17
283 284 6.151144 CGGTTTCTAGATTGAACTTCCCAATT 59.849 38.462 0.00 0.00 34.67 2.32
284 285 5.648092 CGGTTTCTAGATTGAACTTCCCAAT 59.352 40.000 0.00 0.00 36.98 3.16
285 286 5.001232 CGGTTTCTAGATTGAACTTCCCAA 58.999 41.667 0.00 0.00 0.00 4.12
286 287 4.285003 TCGGTTTCTAGATTGAACTTCCCA 59.715 41.667 0.00 0.00 0.00 4.37
287 288 4.828829 TCGGTTTCTAGATTGAACTTCCC 58.171 43.478 0.00 0.00 0.00 3.97
288 289 4.870991 CCTCGGTTTCTAGATTGAACTTCC 59.129 45.833 0.00 0.00 0.00 3.46
289 290 5.721232 TCCTCGGTTTCTAGATTGAACTTC 58.279 41.667 0.00 0.00 0.00 3.01
290 291 5.480772 TCTCCTCGGTTTCTAGATTGAACTT 59.519 40.000 0.00 0.00 0.00 2.66
291 292 5.017490 TCTCCTCGGTTTCTAGATTGAACT 58.983 41.667 0.00 0.00 0.00 3.01
293 294 4.142138 GCTCTCCTCGGTTTCTAGATTGAA 60.142 45.833 0.00 0.00 0.00 2.69
294 295 3.381908 GCTCTCCTCGGTTTCTAGATTGA 59.618 47.826 0.00 0.00 0.00 2.57
295 296 3.712187 GCTCTCCTCGGTTTCTAGATTG 58.288 50.000 0.00 0.00 0.00 2.67
297 298 1.950909 CGCTCTCCTCGGTTTCTAGAT 59.049 52.381 0.00 0.00 0.00 1.98
300 301 1.093159 GTCGCTCTCCTCGGTTTCTA 58.907 55.000 0.00 0.00 0.00 2.10
301 302 1.884444 GTCGCTCTCCTCGGTTTCT 59.116 57.895 0.00 0.00 0.00 2.52
307 308 2.042520 CTTCCTCGTCGCTCTCCTCG 62.043 65.000 0.00 0.00 0.00 4.63
309 310 2.411504 GCTTCCTCGTCGCTCTCCT 61.412 63.158 0.00 0.00 0.00 3.69
318 319 2.166664 GAGGATTACACAGCTTCCTCGT 59.833 50.000 12.89 0.00 43.43 4.18
321 322 1.134670 GCGAGGATTACACAGCTTCCT 60.135 52.381 1.90 1.90 41.29 3.36
322 323 1.134670 AGCGAGGATTACACAGCTTCC 60.135 52.381 0.00 0.00 0.00 3.46
332 333 1.112113 GGTGACCAGAGCGAGGATTA 58.888 55.000 0.00 0.00 0.00 1.75
352 353 4.264038 GGGGATAGAGGTACTTAGGAGGAG 60.264 54.167 0.00 0.00 41.55 3.69
360 361 2.486907 CGACGAGGGGATAGAGGTACTT 60.487 54.545 0.00 0.00 41.55 2.24
362 363 1.202746 ACGACGAGGGGATAGAGGTAC 60.203 57.143 0.00 0.00 0.00 3.34
370 371 2.045634 TGACGACGACGAGGGGAT 60.046 61.111 15.32 0.00 42.66 3.85
373 374 4.813526 CGCTGACGACGACGAGGG 62.814 72.222 15.32 6.48 43.93 4.30
392 393 2.885774 GAAGCTAGGCGACGGTGGTC 62.886 65.000 0.00 0.00 39.89 4.02
394 395 2.202756 GAAGCTAGGCGACGGTGG 60.203 66.667 0.00 0.00 0.00 4.61
398 399 1.226717 GTCAGGAAGCTAGGCGACG 60.227 63.158 0.00 0.00 0.00 5.12
406 407 2.129555 ATTGCCGGTGTCAGGAAGCT 62.130 55.000 1.90 0.00 0.00 3.74
421 422 2.491152 CGGTGGTGATGGCATTGC 59.509 61.111 0.00 0.00 0.00 3.56
478 480 2.111878 GCGTGCTGGATGGCCTAT 59.888 61.111 3.32 0.00 34.31 2.57
485 487 3.640407 AGTGTGGGCGTGCTGGAT 61.640 61.111 0.00 0.00 0.00 3.41
487 489 3.907260 ATCAGTGTGGGCGTGCTGG 62.907 63.158 0.00 0.00 0.00 4.85
497 499 8.135529 TCGACTAATATAAACCAGATCAGTGTG 58.864 37.037 0.00 0.00 0.00 3.82
500 502 8.466617 AGTCGACTAATATAAACCAGATCAGT 57.533 34.615 18.46 0.00 0.00 3.41
502 504 7.504574 TGGAGTCGACTAATATAAACCAGATCA 59.495 37.037 20.09 0.00 0.00 2.92
506 508 7.887381 AGATGGAGTCGACTAATATAAACCAG 58.113 38.462 20.09 0.00 0.00 4.00
507 509 7.039923 GGAGATGGAGTCGACTAATATAAACCA 60.040 40.741 20.09 18.55 0.00 3.67
509 511 7.883217 TGGAGATGGAGTCGACTAATATAAAC 58.117 38.462 20.09 2.81 0.00 2.01
511 513 7.888546 TGATGGAGATGGAGTCGACTAATATAA 59.111 37.037 20.09 5.53 0.00 0.98
512 514 7.402862 TGATGGAGATGGAGTCGACTAATATA 58.597 38.462 20.09 3.62 0.00 0.86
513 515 6.249192 TGATGGAGATGGAGTCGACTAATAT 58.751 40.000 20.09 12.63 0.00 1.28
514 516 5.631119 TGATGGAGATGGAGTCGACTAATA 58.369 41.667 20.09 8.22 0.00 0.98
519 521 2.288702 CCATGATGGAGATGGAGTCGAC 60.289 54.545 5.27 7.70 42.81 4.20
527 529 0.477204 AGTGGGCCATGATGGAGATG 59.523 55.000 17.22 0.00 40.96 2.90
528 530 1.701847 GTAGTGGGCCATGATGGAGAT 59.298 52.381 17.22 0.00 40.96 2.75
550 552 1.254975 TGCTTTCCCGGTCGAGATCA 61.255 55.000 0.00 0.00 0.00 2.92
579 581 1.048601 AACAAAGGAGGAGCGACTCA 58.951 50.000 11.85 0.00 39.27 3.41
602 612 1.075836 TGATCCGGGTGGTTTTGGG 59.924 57.895 0.00 0.00 36.30 4.12
624 634 8.577296 GCTACACAGATACATGACCTTAGAATA 58.423 37.037 0.00 0.00 0.00 1.75
630 640 3.181475 CCGCTACACAGATACATGACCTT 60.181 47.826 0.00 0.00 0.00 3.50
631 641 2.362397 CCGCTACACAGATACATGACCT 59.638 50.000 0.00 0.00 0.00 3.85
640 650 2.379005 TGATCTCACCGCTACACAGAT 58.621 47.619 0.00 0.00 0.00 2.90
642 652 2.159184 ACATGATCTCACCGCTACACAG 60.159 50.000 0.00 0.00 0.00 3.66
659 669 2.607282 GCCGAGAGATACCGGTAACATG 60.607 54.545 20.22 6.68 46.84 3.21
662 672 1.027357 TGCCGAGAGATACCGGTAAC 58.973 55.000 20.22 16.71 46.84 2.50
664 674 1.611977 CAATGCCGAGAGATACCGGTA 59.388 52.381 18.46 18.46 46.84 4.02
673 684 4.233635 GCTGCGCAATGCCGAGAG 62.234 66.667 13.05 0.00 45.60 3.20
680 691 0.456653 GTTTACCCTGCTGCGCAATG 60.457 55.000 13.05 0.81 38.41 2.82
686 697 3.128764 GGACTAAATGTTTACCCTGCTGC 59.871 47.826 0.00 0.00 0.00 5.25
704 715 7.183460 AGTCTGGTACTATCTAAAACTGGACT 58.817 38.462 0.00 0.00 36.36 3.85
705 716 7.407393 AGTCTGGTACTATCTAAAACTGGAC 57.593 40.000 0.00 0.00 36.36 4.02
706 717 7.672660 TGAAGTCTGGTACTATCTAAAACTGGA 59.327 37.037 0.00 0.00 37.50 3.86
707 718 7.837863 TGAAGTCTGGTACTATCTAAAACTGG 58.162 38.462 0.00 0.00 37.50 4.00
709 720 9.482175 AGATGAAGTCTGGTACTATCTAAAACT 57.518 33.333 0.00 0.00 37.50 2.66
715 726 7.836685 TCTTGAAGATGAAGTCTGGTACTATCT 59.163 37.037 0.00 0.00 37.50 1.98
716 727 8.001881 TCTTGAAGATGAAGTCTGGTACTATC 57.998 38.462 0.00 0.00 37.50 2.08
719 730 6.672266 TTCTTGAAGATGAAGTCTGGTACT 57.328 37.500 0.00 0.00 41.49 2.73
721 732 8.924511 ATTTTTCTTGAAGATGAAGTCTGGTA 57.075 30.769 0.00 0.00 37.23 3.25
722 733 7.830099 ATTTTTCTTGAAGATGAAGTCTGGT 57.170 32.000 0.00 0.00 37.23 4.00
740 755 8.520835 AAGCCGATCTTCAACTTTTATTTTTC 57.479 30.769 0.00 0.00 0.00 2.29
749 764 3.695830 TGGTAAGCCGATCTTCAACTT 57.304 42.857 0.00 0.00 36.25 2.66
750 765 3.695830 TTGGTAAGCCGATCTTCAACT 57.304 42.857 0.00 0.00 36.25 3.16
758 887 3.807622 CGTACAATGATTGGTAAGCCGAT 59.192 43.478 10.27 0.00 41.55 4.18
762 891 3.486875 GGCACGTACAATGATTGGTAAGC 60.487 47.826 10.27 6.71 34.12 3.09
779 908 0.949105 GGCGAGGGTATTATGGCACG 60.949 60.000 0.00 0.00 0.00 5.34
780 909 0.396811 AGGCGAGGGTATTATGGCAC 59.603 55.000 0.00 0.00 0.00 5.01
781 910 0.685097 GAGGCGAGGGTATTATGGCA 59.315 55.000 0.00 0.00 0.00 4.92
782 911 0.685097 TGAGGCGAGGGTATTATGGC 59.315 55.000 0.00 0.00 0.00 4.40
783 912 2.632996 TCTTGAGGCGAGGGTATTATGG 59.367 50.000 0.00 0.00 0.00 2.74
784 913 3.654414 GTCTTGAGGCGAGGGTATTATG 58.346 50.000 0.00 0.00 0.00 1.90
785 914 2.296471 CGTCTTGAGGCGAGGGTATTAT 59.704 50.000 0.00 0.00 0.00 1.28
786 915 1.679680 CGTCTTGAGGCGAGGGTATTA 59.320 52.381 0.00 0.00 0.00 0.98
788 917 0.395311 TCGTCTTGAGGCGAGGGTAT 60.395 55.000 3.23 0.00 32.98 2.73
789 918 0.609957 TTCGTCTTGAGGCGAGGGTA 60.610 55.000 7.80 0.00 38.40 3.69
790 919 1.906824 TTCGTCTTGAGGCGAGGGT 60.907 57.895 7.80 0.00 38.40 4.34
791 920 1.446272 GTTCGTCTTGAGGCGAGGG 60.446 63.158 7.80 0.00 38.40 4.30
792 921 1.446272 GGTTCGTCTTGAGGCGAGG 60.446 63.158 7.80 0.00 38.40 4.63
793 922 1.446272 GGGTTCGTCTTGAGGCGAG 60.446 63.158 7.80 0.00 38.40 5.03
794 923 2.204461 TGGGTTCGTCTTGAGGCGA 61.204 57.895 3.23 3.23 35.17 5.54
795 924 2.027625 GTGGGTTCGTCTTGAGGCG 61.028 63.158 0.00 0.00 0.00 5.52
796 925 2.027625 CGTGGGTTCGTCTTGAGGC 61.028 63.158 0.00 0.00 0.00 4.70
839 969 6.604396 TCATGTCCCTAAGAAACGTGTCTATA 59.396 38.462 9.11 3.39 32.87 1.31
840 970 5.421056 TCATGTCCCTAAGAAACGTGTCTAT 59.579 40.000 9.11 2.32 32.87 1.98
852 982 0.806102 CACGGCGTCATGTCCCTAAG 60.806 60.000 10.85 0.00 0.00 2.18
855 985 2.359169 ATCACGGCGTCATGTCCCT 61.359 57.895 10.85 0.00 0.00 4.20
898 1051 3.181566 CGTAATCGTGTCGTATTCATCGC 60.182 47.826 0.00 0.00 0.00 4.58
910 1063 5.589452 GGGGAGATATCTATCGTAATCGTGT 59.411 44.000 4.89 0.00 37.76 4.49
916 1069 5.426504 GACTCGGGGAGATATCTATCGTAA 58.573 45.833 4.89 0.00 37.76 3.18
917 1070 4.141756 GGACTCGGGGAGATATCTATCGTA 60.142 50.000 4.89 0.98 37.76 3.43
923 1076 1.203075 GGTGGACTCGGGGAGATATCT 60.203 57.143 4.47 4.47 33.32 1.98
954 6403 0.923358 ATTTATTGGGGCCGTGGAGA 59.077 50.000 0.00 0.00 0.00 3.71
995 6451 4.927782 TCTTTGCGTGCGTGGGCT 62.928 61.111 0.00 0.00 40.82 5.19
996 6452 3.879351 CTTCTTTGCGTGCGTGGGC 62.879 63.158 0.00 0.00 40.52 5.36
998 6454 2.427410 GCTTCTTTGCGTGCGTGG 60.427 61.111 0.00 0.00 0.00 4.94
1016 6473 1.264288 GAGCGAACAAAAGACACAGGG 59.736 52.381 0.00 0.00 0.00 4.45
1472 6966 2.084546 GGCAAGTAAGGTCGAGCAATT 58.915 47.619 18.15 5.85 0.00 2.32
1680 7244 1.945394 CATAGAAAAGGCAGCGCTGAT 59.055 47.619 40.21 24.61 0.00 2.90
1706 7270 7.649973 AGAATAATTACGACCACTAGCACTAG 58.350 38.462 3.10 3.10 39.04 2.57
1732 7296 5.639506 CAGGAATACACGATGTTTTGACTCT 59.360 40.000 0.00 0.00 0.00 3.24
1738 7302 4.759693 TCTTGCAGGAATACACGATGTTTT 59.240 37.500 0.00 0.00 0.00 2.43
1748 7312 6.018669 CGATAGGTTTCTTCTTGCAGGAATAC 60.019 42.308 12.10 10.18 0.00 1.89
1807 7380 7.060633 GCAAAACGTCCACTTGACAATTAATAG 59.939 37.037 0.00 0.00 44.71 1.73
1812 7385 3.130340 AGCAAAACGTCCACTTGACAATT 59.870 39.130 0.00 0.00 44.71 2.32
1813 7386 2.687935 AGCAAAACGTCCACTTGACAAT 59.312 40.909 0.00 0.00 44.71 2.71
1814 7387 2.088423 AGCAAAACGTCCACTTGACAA 58.912 42.857 0.00 0.00 44.71 3.18
1855 7428 6.682423 TCTCAAATCACACGCATAAATCAT 57.318 33.333 0.00 0.00 0.00 2.45
1931 7505 8.905702 CATGTTGAGTACAAATCTTTAGCAAAC 58.094 33.333 0.00 0.00 40.89 2.93
1944 7518 1.879380 GCTGGTGCATGTTGAGTACAA 59.121 47.619 0.00 0.00 40.89 2.41
1948 7522 4.905240 TGCTGGTGCATGTTGAGT 57.095 50.000 0.00 0.00 45.31 3.41
1957 7531 1.080298 GGACAAATGCTGCTGGTGC 60.080 57.895 0.00 0.00 40.20 5.01
1958 7532 0.892755 ATGGACAAATGCTGCTGGTG 59.107 50.000 0.00 0.00 0.00 4.17
1959 7533 1.180029 GATGGACAAATGCTGCTGGT 58.820 50.000 0.00 0.00 0.00 4.00
1961 7535 0.524816 GCGATGGACAAATGCTGCTG 60.525 55.000 0.00 0.00 0.00 4.41
1962 7536 1.805254 GCGATGGACAAATGCTGCT 59.195 52.632 0.00 0.00 0.00 4.24
1963 7537 1.584483 CGCGATGGACAAATGCTGC 60.584 57.895 0.00 0.00 0.00 5.25
1964 7538 1.584483 GCGCGATGGACAAATGCTG 60.584 57.895 12.10 0.00 0.00 4.41
1965 7539 2.793946 GCGCGATGGACAAATGCT 59.206 55.556 12.10 0.00 0.00 3.79
1968 7542 2.125310 TCCGCGCGATGGACAAAT 60.125 55.556 34.63 0.00 0.00 2.32
1996 7603 4.994220 AACCCGAAACAAAACAACAAAC 57.006 36.364 0.00 0.00 0.00 2.93
1999 7606 5.593502 ACCTATAACCCGAAACAAAACAACA 59.406 36.000 0.00 0.00 0.00 3.33
2005 7612 4.621274 CGGAGACCTATAACCCGAAACAAA 60.621 45.833 0.00 0.00 42.49 2.83
2008 7615 2.800985 GCGGAGACCTATAACCCGAAAC 60.801 54.545 0.00 0.00 42.49 2.78
2009 7616 1.410153 GCGGAGACCTATAACCCGAAA 59.590 52.381 0.00 0.00 42.49 3.46
2019 7626 4.080695 TCAAGACTAACTAGCGGAGACCTA 60.081 45.833 0.00 0.00 0.00 3.08
2020 7627 3.018149 CAAGACTAACTAGCGGAGACCT 58.982 50.000 0.00 0.00 0.00 3.85
2028 7635 1.131883 TCGGCGTCAAGACTAACTAGC 59.868 52.381 6.85 0.00 0.00 3.42
2031 7638 0.243095 GGTCGGCGTCAAGACTAACT 59.757 55.000 6.85 0.00 37.52 2.24
2032 7639 0.038892 TGGTCGGCGTCAAGACTAAC 60.039 55.000 6.85 0.00 37.52 2.34
2034 7641 1.592400 CCTGGTCGGCGTCAAGACTA 61.592 60.000 10.16 0.00 37.52 2.59
2036 7643 2.432628 CCTGGTCGGCGTCAAGAC 60.433 66.667 10.16 0.00 36.70 3.01
2037 7644 2.915659 ACCTGGTCGGCGTCAAGA 60.916 61.111 10.16 0.00 35.61 3.02
2039 7646 3.998672 GGACCTGGTCGGCGTCAA 61.999 66.667 19.98 0.00 35.61 3.18
2057 7664 4.319046 CGACAAAGTGACACAAGATCTTGG 60.319 45.833 33.11 24.71 44.45 3.61
2058 7665 4.271049 ACGACAAAGTGACACAAGATCTTG 59.729 41.667 29.74 29.74 45.58 3.02
2059 7666 4.442706 ACGACAAAGTGACACAAGATCTT 58.557 39.130 8.59 0.88 0.00 2.40
2060 7667 4.060038 ACGACAAAGTGACACAAGATCT 57.940 40.909 8.59 0.00 0.00 2.75
2061 7668 4.795970 AACGACAAAGTGACACAAGATC 57.204 40.909 8.59 0.00 0.00 2.75
2062 7669 5.560966 AAAACGACAAAGTGACACAAGAT 57.439 34.783 8.59 0.00 0.00 2.40
2063 7670 5.150683 CAAAAACGACAAAGTGACACAAGA 58.849 37.500 8.59 0.00 0.00 3.02
2064 7671 4.201485 GCAAAAACGACAAAGTGACACAAG 60.201 41.667 8.59 0.00 0.00 3.16
2065 7672 3.670991 GCAAAAACGACAAAGTGACACAA 59.329 39.130 8.59 0.00 0.00 3.33
2066 7673 3.057876 AGCAAAAACGACAAAGTGACACA 60.058 39.130 8.59 0.00 0.00 3.72
2067 7674 3.498082 AGCAAAAACGACAAAGTGACAC 58.502 40.909 0.00 0.00 0.00 3.67
2073 7680 1.708680 GCGCTAGCAAAAACGACAAAG 59.291 47.619 16.45 0.00 44.35 2.77
2093 7700 2.688446 TCGTCATACCTGTCTTGCTAGG 59.312 50.000 0.00 0.00 40.01 3.02
2094 7701 3.489398 GGTCGTCATACCTGTCTTGCTAG 60.489 52.174 0.00 0.00 36.53 3.42
2095 7702 2.426024 GGTCGTCATACCTGTCTTGCTA 59.574 50.000 0.00 0.00 36.53 3.49
2096 7703 1.204941 GGTCGTCATACCTGTCTTGCT 59.795 52.381 0.00 0.00 36.53 3.91
2097 7704 1.641577 GGTCGTCATACCTGTCTTGC 58.358 55.000 0.00 0.00 36.53 4.01
2107 7714 3.218974 GGGGGAGAAGGTCGTCATA 57.781 57.895 0.00 0.00 0.00 2.15
2108 7715 4.051932 GGGGGAGAAGGTCGTCAT 57.948 61.111 0.00 0.00 0.00 3.06
2159 7766 2.592308 GGTGAGCAGGGATGGGAC 59.408 66.667 0.00 0.00 0.00 4.46
2160 7767 2.692368 GGGTGAGCAGGGATGGGA 60.692 66.667 0.00 0.00 0.00 4.37
2161 7768 3.813724 GGGGTGAGCAGGGATGGG 61.814 72.222 0.00 0.00 0.00 4.00
2162 7769 3.813724 GGGGGTGAGCAGGGATGG 61.814 72.222 0.00 0.00 0.00 3.51
2184 7791 3.506059 AATCGATGGCCCTCGCTCG 62.506 63.158 23.86 12.87 38.52 5.03
2185 7792 1.666234 GAATCGATGGCCCTCGCTC 60.666 63.158 23.86 18.06 38.52 5.03
2186 7793 2.423446 GAATCGATGGCCCTCGCT 59.577 61.111 23.86 13.14 38.52 4.93
2187 7794 2.666526 GGAATCGATGGCCCTCGC 60.667 66.667 23.86 11.17 38.52 5.03
2188 7795 2.031163 GGGAATCGATGGCCCTCG 59.969 66.667 22.85 22.85 38.85 4.63
2189 7796 2.432123 GGGGAATCGATGGCCCTC 59.568 66.667 26.85 17.41 41.72 4.30
2190 7797 3.178611 GGGGGAATCGATGGCCCT 61.179 66.667 26.85 1.61 41.72 5.19
2224 7831 1.209504 TCTTGGGCAGGATTTCTACCG 59.790 52.381 0.00 0.00 29.24 4.02
2225 7832 3.017442 GTTCTTGGGCAGGATTTCTACC 58.983 50.000 0.00 0.00 0.00 3.18
2227 7834 3.561313 GGTGTTCTTGGGCAGGATTTCTA 60.561 47.826 0.00 0.00 0.00 2.10
2228 7835 2.519013 GTGTTCTTGGGCAGGATTTCT 58.481 47.619 0.00 0.00 0.00 2.52
2239 7846 2.026641 CATGGGCATAGGTGTTCTTGG 58.973 52.381 0.00 0.00 0.00 3.61
2241 7848 2.578021 ACTCATGGGCATAGGTGTTCTT 59.422 45.455 0.00 0.00 0.00 2.52
2242 7849 2.200081 ACTCATGGGCATAGGTGTTCT 58.800 47.619 0.00 0.00 0.00 3.01
2262 7869 2.494471 CCACACTATACGTCCACTCCAA 59.506 50.000 0.00 0.00 0.00 3.53
2264 7871 2.372264 TCCACACTATACGTCCACTCC 58.628 52.381 0.00 0.00 0.00 3.85
2273 8150 8.364894 TGTCACCATGTAATATCCACACTATAC 58.635 37.037 0.00 0.00 0.00 1.47
2298 8175 3.490348 AGGATGTCCTTGACCAAACTTG 58.510 45.455 0.00 0.00 46.09 3.16
2299 8176 3.884037 AGGATGTCCTTGACCAAACTT 57.116 42.857 0.00 0.00 46.09 2.66
2317 8194 4.157289 CACAATCAATCACTCCTCCAAAGG 59.843 45.833 0.00 0.00 44.89 3.11
2318 8195 4.157289 CCACAATCAATCACTCCTCCAAAG 59.843 45.833 0.00 0.00 0.00 2.77
2321 8215 2.912295 TCCACAATCAATCACTCCTCCA 59.088 45.455 0.00 0.00 0.00 3.86
2335 8229 3.218453 TCGAACCAAACATGTCCACAAT 58.782 40.909 0.00 0.00 0.00 2.71
2337 8231 2.333688 TCGAACCAAACATGTCCACA 57.666 45.000 0.00 0.00 0.00 4.17
2349 8243 8.673711 CCTGTATTATTCAGAAAAATCGAACCA 58.326 33.333 0.30 0.00 35.20 3.67
2351 8245 8.398665 AGCCTGTATTATTCAGAAAAATCGAAC 58.601 33.333 0.30 0.00 35.20 3.95
2354 8248 8.184192 ACAAGCCTGTATTATTCAGAAAAATCG 58.816 33.333 0.30 0.00 35.20 3.34
2368 8265 4.397417 GCAGATGAGAAACAAGCCTGTATT 59.603 41.667 0.00 0.00 33.45 1.89
2369 8266 3.944015 GCAGATGAGAAACAAGCCTGTAT 59.056 43.478 0.00 0.00 33.45 2.29
2371 8268 2.157738 GCAGATGAGAAACAAGCCTGT 58.842 47.619 0.00 0.00 37.39 4.00
2372 8269 2.156917 TGCAGATGAGAAACAAGCCTG 58.843 47.619 0.00 0.00 0.00 4.85
2373 8270 2.224719 ACTGCAGATGAGAAACAAGCCT 60.225 45.455 23.35 0.00 0.00 4.58
2389 8286 1.883638 GCTCCAATGTGAAGGACTGCA 60.884 52.381 0.00 0.00 0.00 4.41
2391 8288 1.271543 TGGCTCCAATGTGAAGGACTG 60.272 52.381 0.00 0.00 0.00 3.51
2400 8297 1.632409 ACAGAGATGTGGCTCCAATGT 59.368 47.619 0.00 0.00 35.49 2.71
2402 8299 3.713248 TCATACAGAGATGTGGCTCCAAT 59.287 43.478 0.00 0.00 35.49 3.16
2410 8307 7.606858 AACTGAACAATCATACAGAGATGTG 57.393 36.000 0.00 0.00 34.37 3.21
2436 8410 5.914635 GTCCATCAACAAACACTTACATGTG 59.085 40.000 9.11 0.00 43.07 3.21
2437 8411 5.009610 GGTCCATCAACAAACACTTACATGT 59.990 40.000 2.69 2.69 0.00 3.21
2441 8415 5.460646 CATGGTCCATCAACAAACACTTAC 58.539 41.667 0.00 0.00 0.00 2.34
2442 8416 4.522405 CCATGGTCCATCAACAAACACTTA 59.478 41.667 2.57 0.00 0.00 2.24
2447 8421 3.652274 CAACCATGGTCCATCAACAAAC 58.348 45.455 20.07 0.00 0.00 2.93
2479 8453 8.232913 TCTGCCAATTAAAATTAGTATGACCC 57.767 34.615 0.00 0.00 0.00 4.46
2480 8454 9.516314 GTTCTGCCAATTAAAATTAGTATGACC 57.484 33.333 0.00 0.00 0.00 4.02
2495 8469 3.957497 TGGTGTGTTTAGTTCTGCCAATT 59.043 39.130 0.00 0.00 0.00 2.32
2497 8471 3.006112 TGGTGTGTTTAGTTCTGCCAA 57.994 42.857 0.00 0.00 0.00 4.52
2498 8472 2.719531 TGGTGTGTTTAGTTCTGCCA 57.280 45.000 0.00 0.00 0.00 4.92
2518 8497 6.194285 AGAAAAAGAAACTAAGAGAGGGCT 57.806 37.500 0.00 0.00 0.00 5.19
2551 8530 1.758936 ACATAAAACTTAGGGCGCCC 58.241 50.000 39.29 39.29 0.00 6.13
2555 8534 9.188588 GTCAAACTTAAACATAAAACTTAGGGC 57.811 33.333 0.00 0.00 0.00 5.19
2638 8618 3.394606 AGAAACTTAGGGAGCCTGAACAA 59.605 43.478 0.00 0.00 34.61 2.83
2645 8625 6.122964 ACATTGAATAGAAACTTAGGGAGCC 58.877 40.000 0.00 0.00 0.00 4.70
2647 8627 9.454859 AAGAACATTGAATAGAAACTTAGGGAG 57.545 33.333 0.00 0.00 0.00 4.30
2666 8648 8.548877 TGCCCTACTATAAAGAAGAAAGAACAT 58.451 33.333 0.00 0.00 0.00 2.71
2719 8701 2.241160 AGCAATGGCACTGAACAATGA 58.759 42.857 0.00 0.00 44.61 2.57
2720 8702 2.736144 AGCAATGGCACTGAACAATG 57.264 45.000 0.00 0.00 44.61 2.82
2721 8703 3.069872 TGAAAGCAATGGCACTGAACAAT 59.930 39.130 0.00 0.00 44.61 2.71
2730 8712 3.384146 TGAACTTTCTGAAAGCAATGGCA 59.616 39.130 25.76 13.81 44.61 4.92
2731 8713 3.981211 TGAACTTTCTGAAAGCAATGGC 58.019 40.909 25.76 11.85 42.27 4.40
2732 8714 5.192327 ACTGAACTTTCTGAAAGCAATGG 57.808 39.130 25.76 15.85 42.27 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.