Multiple sequence alignment - TraesCS5D01G474100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G474100 chr5D 100.000 5139 0 0 1 5139 513972136 513977274 0.000000e+00 9491.0
1 TraesCS5D01G474100 chr5D 80.556 288 36 13 4293 4571 513908166 513907890 2.430000e-48 204.0
2 TraesCS5D01G474100 chr5D 100.000 86 0 0 2927 3012 381152002 381151917 5.330000e-35 159.0
3 TraesCS5D01G474100 chr5D 98.246 57 1 0 5057 5113 513977051 513977107 3.270000e-17 100.0
4 TraesCS5D01G474100 chr5D 98.246 57 1 0 4916 4972 513977192 513977248 3.270000e-17 100.0
5 TraesCS5D01G474100 chr5D 97.917 48 1 0 5008 5055 513976391 513976438 3.300000e-12 84.2
6 TraesCS5D01G474100 chr5D 97.917 48 1 0 4256 4303 513977143 513977190 3.300000e-12 84.2
7 TraesCS5D01G474100 chr5D 95.918 49 2 0 4973 5021 513977016 513977064 4.270000e-11 80.5
8 TraesCS5D01G474100 chr5D 95.918 49 2 0 4881 4929 513977108 513977156 4.270000e-11 80.5
9 TraesCS5D01G474100 chr5D 100.000 37 0 0 5055 5091 513907010 513906974 9.230000e-08 69.4
10 TraesCS5D01G474100 chr5D 100.000 35 0 0 4916 4950 513907008 513906974 1.190000e-06 65.8
11 TraesCS5D01G474100 chr5D 94.286 35 2 0 4803 4837 513907225 513907191 3.000000e-03 54.7
12 TraesCS5D01G474100 chr5B 93.461 1988 89 22 3010 4972 644887530 644889501 0.000000e+00 2913.0
13 TraesCS5D01G474100 chr5B 89.746 1258 77 15 669 1893 644885158 644886396 0.000000e+00 1561.0
14 TraesCS5D01G474100 chr5B 97.074 752 19 2 2181 2929 644886781 644887532 0.000000e+00 1264.0
15 TraesCS5D01G474100 chr5B 92.226 283 19 1 1899 2178 644886447 644886729 1.040000e-106 398.0
16 TraesCS5D01G474100 chr5B 85.714 112 8 4 4588 4691 644865312 644865201 1.510000e-20 111.0
17 TraesCS5D01G474100 chr5B 93.333 75 1 1 5057 5127 644889441 644889515 1.960000e-19 108.0
18 TraesCS5D01G474100 chr5B 85.714 91 5 6 4822 4910 644864589 644864505 7.090000e-14 89.8
19 TraesCS5D01G474100 chr5B 95.745 47 2 0 5008 5054 644888774 644888820 5.520000e-10 76.8
20 TraesCS5D01G474100 chr5A 89.864 1697 82 32 3009 4671 641730806 641732446 0.000000e+00 2098.0
21 TraesCS5D01G474100 chr5A 87.430 1774 121 36 489 2178 641728248 641730003 0.000000e+00 1947.0
22 TraesCS5D01G474100 chr5A 97.074 752 19 1 2181 2929 641730055 641730806 0.000000e+00 1264.0
23 TraesCS5D01G474100 chr5A 83.768 690 84 16 3873 4555 641684664 641683996 3.380000e-176 628.0
24 TraesCS5D01G474100 chr5A 90.394 406 33 5 3874 4278 641682780 641682380 3.520000e-146 529.0
25 TraesCS5D01G474100 chr5A 81.429 630 107 8 51 673 527397752 527398378 1.650000e-139 507.0
26 TraesCS5D01G474100 chr5A 94.737 95 5 0 2920 3014 526875308 526875402 1.150000e-31 148.0
27 TraesCS5D01G474100 chr5A 93.939 99 5 1 2917 3014 612715686 612715784 1.150000e-31 148.0
28 TraesCS5D01G474100 chr5A 95.918 49 2 0 5008 5056 641732005 641732053 4.270000e-11 80.5
29 TraesCS5D01G474100 chrUn 100.000 389 0 0 2250 2638 480189589 480189201 0.000000e+00 719.0
30 TraesCS5D01G474100 chr2D 87.027 555 65 6 126 679 429082211 429081663 2.030000e-173 619.0
31 TraesCS5D01G474100 chr2D 77.844 844 158 19 3309 4134 402307534 402306702 3.570000e-136 496.0
32 TraesCS5D01G474100 chr7D 86.415 530 70 2 126 654 11414532 11414004 3.450000e-161 579.0
33 TraesCS5D01G474100 chr7D 90.179 112 5 5 2927 3035 498229923 498229815 1.930000e-29 141.0
34 TraesCS5D01G474100 chr7B 83.683 619 84 8 50 654 107765457 107764842 7.470000e-158 568.0
35 TraesCS5D01G474100 chr7B 85.225 555 79 3 126 678 690023501 690024054 7.470000e-158 568.0
36 TraesCS5D01G474100 chr6D 85.294 544 77 3 129 670 394210099 394209557 4.490000e-155 558.0
37 TraesCS5D01G474100 chr6D 84.699 549 82 2 126 672 423480254 423479706 9.730000e-152 547.0
38 TraesCS5D01G474100 chr6D 93.750 96 4 2 2926 3020 283795856 283795762 5.360000e-30 143.0
39 TraesCS5D01G474100 chr6A 82.911 632 92 6 52 669 438026754 438026125 5.810000e-154 555.0
40 TraesCS5D01G474100 chr1A 84.489 548 83 2 126 671 563185038 563184491 1.630000e-149 540.0
41 TraesCS5D01G474100 chr1A 76.307 861 172 24 3290 4139 303854569 303853730 1.020000e-116 431.0
42 TraesCS5D01G474100 chr2B 77.630 827 163 15 3291 4104 476400022 476400839 2.780000e-132 483.0
43 TraesCS5D01G474100 chr2B 94.318 88 5 0 2927 3014 774081696 774081609 8.980000e-28 135.0
44 TraesCS5D01G474100 chr2A 77.379 809 167 12 3290 4088 539394318 539393516 2.800000e-127 466.0
45 TraesCS5D01G474100 chr2A 92.157 102 5 3 2920 3018 539325569 539325670 1.930000e-29 141.0
46 TraesCS5D01G474100 chr1D 76.808 802 168 14 3309 4104 239806955 239806166 7.900000e-118 435.0
47 TraesCS5D01G474100 chr1D 93.814 97 6 0 2916 3012 415688346 415688442 4.150000e-31 147.0
48 TraesCS5D01G474100 chr6B 94.792 96 4 1 2924 3019 76149745 76149839 1.150000e-31 148.0
49 TraesCS5D01G474100 chr3D 78.836 189 26 12 4256 4434 39419063 39419247 1.170000e-21 115.0
50 TraesCS5D01G474100 chr3B 77.852 149 18 7 4134 4277 718350638 718350776 1.530000e-10 78.7
51 TraesCS5D01G474100 chr3B 86.154 65 5 2 4511 4571 718350980 718351044 3.320000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G474100 chr5D 513972136 513977274 5138 False 1431.485714 9491 97.737429 1 5139 7 chr5D.!!$F1 5138
1 TraesCS5D01G474100 chr5B 644885158 644889515 4357 False 1053.466667 2913 93.597500 669 5127 6 chr5B.!!$F1 4458
2 TraesCS5D01G474100 chr5A 641728248 641732446 4198 False 1347.375000 2098 92.571500 489 5056 4 chr5A.!!$F4 4567
3 TraesCS5D01G474100 chr5A 641682380 641684664 2284 True 578.500000 628 87.081000 3873 4555 2 chr5A.!!$R1 682
4 TraesCS5D01G474100 chr5A 527397752 527398378 626 False 507.000000 507 81.429000 51 673 1 chr5A.!!$F2 622
5 TraesCS5D01G474100 chr2D 429081663 429082211 548 True 619.000000 619 87.027000 126 679 1 chr2D.!!$R2 553
6 TraesCS5D01G474100 chr2D 402306702 402307534 832 True 496.000000 496 77.844000 3309 4134 1 chr2D.!!$R1 825
7 TraesCS5D01G474100 chr7D 11414004 11414532 528 True 579.000000 579 86.415000 126 654 1 chr7D.!!$R1 528
8 TraesCS5D01G474100 chr7B 107764842 107765457 615 True 568.000000 568 83.683000 50 654 1 chr7B.!!$R1 604
9 TraesCS5D01G474100 chr7B 690023501 690024054 553 False 568.000000 568 85.225000 126 678 1 chr7B.!!$F1 552
10 TraesCS5D01G474100 chr6D 394209557 394210099 542 True 558.000000 558 85.294000 129 670 1 chr6D.!!$R2 541
11 TraesCS5D01G474100 chr6D 423479706 423480254 548 True 547.000000 547 84.699000 126 672 1 chr6D.!!$R3 546
12 TraesCS5D01G474100 chr6A 438026125 438026754 629 True 555.000000 555 82.911000 52 669 1 chr6A.!!$R1 617
13 TraesCS5D01G474100 chr1A 563184491 563185038 547 True 540.000000 540 84.489000 126 671 1 chr1A.!!$R2 545
14 TraesCS5D01G474100 chr1A 303853730 303854569 839 True 431.000000 431 76.307000 3290 4139 1 chr1A.!!$R1 849
15 TraesCS5D01G474100 chr2B 476400022 476400839 817 False 483.000000 483 77.630000 3291 4104 1 chr2B.!!$F1 813
16 TraesCS5D01G474100 chr2A 539393516 539394318 802 True 466.000000 466 77.379000 3290 4088 1 chr2A.!!$R1 798
17 TraesCS5D01G474100 chr1D 239806166 239806955 789 True 435.000000 435 76.808000 3309 4104 1 chr1D.!!$R1 795

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
827 851 0.319986 TCACGCATGCCGACAGTTTA 60.320 50.0 13.15 0.00 41.02 2.01 F
1129 1163 0.245539 ATACACCAGCTGTACGCGTT 59.754 50.0 20.78 0.80 45.59 4.84 F
1131 1165 0.388134 ACACCAGCTGTACGCGTTAG 60.388 55.0 20.78 17.84 45.59 2.34 F
1489 1575 0.901124 AGCTCCCTGCACTTGTAGAG 59.099 55.0 0.00 0.00 45.94 2.43 F
2815 3016 2.028385 TCCTAGAAAAACGTCTCCAGGC 60.028 50.0 0.00 0.00 0.00 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2806 3007 0.890683 CACCCAAATTGCCTGGAGAC 59.109 55.000 0.00 0.00 35.85 3.36 R
2815 3016 1.070175 GTGTCGTCGTCACCCAAATTG 60.070 52.381 10.95 0.00 0.00 2.32 R
3066 3271 5.472148 TGAGAAAAGTTGCAAGCATAATGG 58.528 37.500 0.00 0.00 0.00 3.16 R
3149 3354 8.250332 ACACATCAGCTTAGAAAAAGAAAACAA 58.750 29.630 0.00 0.00 0.00 2.83 R
4434 4676 1.083489 TGAAATTCTAGGCGCGTTGG 58.917 50.000 8.36 1.93 0.00 3.77 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.912951 CGTAAGAAGATTATCCTCCCCTAA 57.087 41.667 0.00 0.00 43.02 2.69
24 25 7.299246 CGTAAGAAGATTATCCTCCCCTAAA 57.701 40.000 0.00 0.00 43.02 1.85
25 26 7.153315 CGTAAGAAGATTATCCTCCCCTAAAC 58.847 42.308 0.00 0.00 43.02 2.01
26 27 7.015389 CGTAAGAAGATTATCCTCCCCTAAACT 59.985 40.741 0.00 0.00 43.02 2.66
27 28 9.377238 GTAAGAAGATTATCCTCCCCTAAACTA 57.623 37.037 0.00 0.00 0.00 2.24
28 29 8.871570 AAGAAGATTATCCTCCCCTAAACTAA 57.128 34.615 0.00 0.00 0.00 2.24
29 30 8.499288 AGAAGATTATCCTCCCCTAAACTAAG 57.501 38.462 0.00 0.00 0.00 2.18
30 31 8.074991 AGAAGATTATCCTCCCCTAAACTAAGT 58.925 37.037 0.00 0.00 0.00 2.24
31 32 7.859026 AGATTATCCTCCCCTAAACTAAGTC 57.141 40.000 0.00 0.00 0.00 3.01
32 33 7.606581 AGATTATCCTCCCCTAAACTAAGTCT 58.393 38.462 0.00 0.00 0.00 3.24
33 34 8.074991 AGATTATCCTCCCCTAAACTAAGTCTT 58.925 37.037 0.00 0.00 0.00 3.01
34 35 9.377238 GATTATCCTCCCCTAAACTAAGTCTTA 57.623 37.037 0.00 0.00 0.00 2.10
35 36 8.779096 TTATCCTCCCCTAAACTAAGTCTTAG 57.221 38.462 16.64 16.64 39.18 2.18
36 37 6.413129 TCCTCCCCTAAACTAAGTCTTAGA 57.587 41.667 23.62 3.39 36.73 2.10
37 38 6.808357 TCCTCCCCTAAACTAAGTCTTAGAA 58.192 40.000 23.62 9.43 36.73 2.10
38 39 7.428335 TCCTCCCCTAAACTAAGTCTTAGAAT 58.572 38.462 23.62 14.38 36.73 2.40
39 40 7.905106 TCCTCCCCTAAACTAAGTCTTAGAATT 59.095 37.037 23.62 18.61 36.73 2.17
40 41 7.988028 CCTCCCCTAAACTAAGTCTTAGAATTG 59.012 40.741 23.62 12.79 36.73 2.32
41 42 7.336396 TCCCCTAAACTAAGTCTTAGAATTGC 58.664 38.462 23.62 0.00 36.73 3.56
42 43 7.037873 TCCCCTAAACTAAGTCTTAGAATTGCA 60.038 37.037 23.62 6.10 36.73 4.08
43 44 7.775561 CCCCTAAACTAAGTCTTAGAATTGCAT 59.224 37.037 23.62 0.00 36.73 3.96
44 45 8.616076 CCCTAAACTAAGTCTTAGAATTGCATG 58.384 37.037 23.62 10.81 36.73 4.06
45 46 8.616076 CCTAAACTAAGTCTTAGAATTGCATGG 58.384 37.037 23.62 14.28 36.73 3.66
46 47 9.167311 CTAAACTAAGTCTTAGAATTGCATGGT 57.833 33.333 23.62 0.00 36.73 3.55
47 48 8.409358 AAACTAAGTCTTAGAATTGCATGGTT 57.591 30.769 23.62 4.15 36.73 3.67
48 49 7.383102 ACTAAGTCTTAGAATTGCATGGTTG 57.617 36.000 23.62 0.00 36.73 3.77
67 68 4.393834 GTTGGCTTTTCTTTCCTCTCTCT 58.606 43.478 0.00 0.00 0.00 3.10
85 86 0.967380 CTCAAGGCGGCTTGGGAAAT 60.967 55.000 40.28 8.67 36.98 2.17
108 109 2.430332 CCTTCTTTCCTCGATCTCTGCT 59.570 50.000 0.00 0.00 0.00 4.24
111 112 1.480137 CTTTCCTCGATCTCTGCTGGT 59.520 52.381 0.00 0.00 0.00 4.00
138 150 4.838152 GATTCGCCTGCCGCTCCA 62.838 66.667 0.00 0.00 36.73 3.86
261 276 4.320935 GCTTCTTCTTCGAGTCAGTCTTCT 60.321 45.833 0.00 0.00 0.00 2.85
283 298 1.202475 GGCTCCGATCCTTCTCAAGTC 60.202 57.143 0.00 0.00 0.00 3.01
294 309 2.702592 TCTCAAGTCCGTTTGTTGGT 57.297 45.000 0.00 0.00 0.00 3.67
297 312 3.133362 TCTCAAGTCCGTTTGTTGGTACT 59.867 43.478 0.00 0.00 0.00 2.73
307 322 5.642063 CCGTTTGTTGGTACTGATTAGACAT 59.358 40.000 0.00 0.00 0.00 3.06
338 353 0.545646 AGATTCCTGCCAGCTCCTTC 59.454 55.000 0.00 0.00 0.00 3.46
340 355 1.267574 ATTCCTGCCAGCTCCTTCGA 61.268 55.000 0.00 0.00 0.00 3.71
412 427 4.932200 GTGTCAGGTTCTTCAGATCGATTT 59.068 41.667 0.00 0.00 0.00 2.17
492 507 4.160439 ACGAAGACTTCTTGGCTATCATCA 59.840 41.667 13.22 0.00 36.11 3.07
637 652 4.024387 GTGCTTTGTACTTTCGGTGAATCA 60.024 41.667 0.00 0.00 0.00 2.57
724 740 4.469945 TCCTTGAGACAAGGGTATTACTGG 59.530 45.833 24.22 2.73 37.99 4.00
731 747 3.279434 CAAGGGTATTACTGGCAAGACC 58.721 50.000 0.00 0.00 38.75 3.85
773 797 3.650950 GGGAAGCAGGCCACCTCA 61.651 66.667 5.01 0.00 0.00 3.86
775 799 1.751927 GGAAGCAGGCCACCTCATG 60.752 63.158 5.01 0.00 0.00 3.07
777 801 0.747283 GAAGCAGGCCACCTCATGAG 60.747 60.000 16.24 16.24 0.00 2.90
779 803 2.124403 CAGGCCACCTCATGAGCC 60.124 66.667 17.76 15.87 42.16 4.70
780 804 2.285969 AGGCCACCTCATGAGCCT 60.286 61.111 18.06 18.06 45.19 4.58
781 805 2.191641 GGCCACCTCATGAGCCTC 59.808 66.667 17.76 5.68 39.98 4.70
815 839 3.814268 GCCCACGCAATCACGCAT 61.814 61.111 0.00 0.00 36.19 4.73
827 851 0.319986 TCACGCATGCCGACAGTTTA 60.320 50.000 13.15 0.00 41.02 2.01
846 874 4.988716 TGTCCTGCCCCTCGTCGT 62.989 66.667 0.00 0.00 0.00 4.34
856 884 0.455633 CCCTCGTCGTTAGTCGTTGG 60.456 60.000 0.00 0.00 40.80 3.77
1035 1069 4.228567 TCCACACGCGCTGGTTCA 62.229 61.111 19.85 1.93 0.00 3.18
1064 1098 1.372087 CCTTCGATTCCAGCACTGCC 61.372 60.000 0.00 0.00 0.00 4.85
1095 1129 1.570857 TTCGTCAGGCCAATGGGGAT 61.571 55.000 5.01 0.00 40.01 3.85
1096 1130 1.076777 CGTCAGGCCAATGGGGATT 60.077 57.895 5.01 0.00 40.01 3.01
1097 1131 0.684153 CGTCAGGCCAATGGGGATTT 60.684 55.000 5.01 0.00 40.01 2.17
1098 1132 1.114627 GTCAGGCCAATGGGGATTTC 58.885 55.000 5.01 0.00 40.01 2.17
1105 1139 3.118629 GGCCAATGGGGATTTCTTTTCTC 60.119 47.826 0.00 0.00 40.01 2.87
1113 1147 9.634021 AATGGGGATTTCTTTTCTCTCTTATAC 57.366 33.333 0.00 0.00 0.00 1.47
1116 1150 7.499563 GGGGATTTCTTTTCTCTCTTATACACC 59.500 40.741 0.00 0.00 0.00 4.16
1121 1155 6.634805 TCTTTTCTCTCTTATACACCAGCTG 58.365 40.000 6.78 6.78 0.00 4.24
1124 1158 6.452494 TTCTCTCTTATACACCAGCTGTAC 57.548 41.667 13.81 0.00 38.22 2.90
1129 1163 0.245539 ATACACCAGCTGTACGCGTT 59.754 50.000 20.78 0.80 45.59 4.84
1131 1165 0.388134 ACACCAGCTGTACGCGTTAG 60.388 55.000 20.78 17.84 45.59 2.34
1135 1169 1.445582 AGCTGTACGCGTTAGTGGC 60.446 57.895 20.78 15.08 45.59 5.01
1146 1180 1.533731 CGTTAGTGGCGTTCATTTGGT 59.466 47.619 0.00 0.00 0.00 3.67
1147 1181 2.031508 CGTTAGTGGCGTTCATTTGGTT 60.032 45.455 0.00 0.00 0.00 3.67
1151 1185 1.211709 GGCGTTCATTTGGTTCCCG 59.788 57.895 0.00 0.00 0.00 5.14
1152 1186 1.443702 GCGTTCATTTGGTTCCCGC 60.444 57.895 0.00 0.00 0.00 6.13
1183 1217 4.936685 ATTAGGCCAAGATAGGGGATTC 57.063 45.455 5.01 0.00 0.00 2.52
1194 1228 6.432403 AGATAGGGGATTCTTCACTGATTC 57.568 41.667 0.00 0.00 0.00 2.52
1265 1309 4.122776 CTGTATCCGCTAAAAGCAGATGT 58.877 43.478 7.69 0.00 42.58 3.06
1281 1325 4.987285 GCAGATGTGTAGATGTGTATCTGG 59.013 45.833 12.33 0.00 43.41 3.86
1303 1358 2.439409 CAATGCATTCAGGTGGACTCA 58.561 47.619 9.53 0.00 0.00 3.41
1344 1399 2.557317 CATTTTGATTGATGGCTGGGC 58.443 47.619 0.00 0.00 0.00 5.36
1485 1571 1.374190 CTCAGCTCCCTGCACTTGT 59.626 57.895 0.00 0.00 45.94 3.16
1489 1575 0.901124 AGCTCCCTGCACTTGTAGAG 59.099 55.000 0.00 0.00 45.94 2.43
1572 1667 6.317391 CCTTGAGTGAAACAGGGATATTCTTC 59.683 42.308 0.00 0.00 41.43 2.87
1590 1685 3.652869 TCTTCTTCTTCCATTGTCACCCT 59.347 43.478 0.00 0.00 0.00 4.34
1601 1696 2.656947 TGTCACCCTCTTCCCTTTTG 57.343 50.000 0.00 0.00 0.00 2.44
1743 1841 6.119536 TGGATTGGCCTGTTAACTAATAGTG 58.880 40.000 3.32 0.00 37.63 2.74
1896 1997 8.442384 CAATTTATAGTGGCAAATTCACCAAAC 58.558 33.333 1.16 0.00 37.79 2.93
1904 2050 4.694509 GGCAAATTCACCAAACATTATGCA 59.305 37.500 0.00 0.00 0.00 3.96
1997 2143 5.868801 TGCAATTAACTTTTTGGAGCATAGC 59.131 36.000 0.00 0.00 0.00 2.97
2126 2272 9.945904 CTAAGGACTTAAGGAGTGAATTTAAGT 57.054 33.333 7.53 8.19 45.37 2.24
2172 2321 8.034058 AGTAGATTGAAACATGTTTACTCTGC 57.966 34.615 23.33 23.22 32.11 4.26
2178 2327 4.818534 AACATGTTTACTCTGCTGTGTG 57.181 40.909 4.92 0.00 0.00 3.82
2179 2328 3.141398 ACATGTTTACTCTGCTGTGTGG 58.859 45.455 8.38 0.00 0.00 4.17
2746 2947 3.312828 GTTTGCATTTATTGTGGTCGCA 58.687 40.909 0.00 0.00 0.00 5.10
2806 3007 3.744426 ACACCGTTGATCCTAGAAAAACG 59.256 43.478 10.88 10.88 42.33 3.60
2815 3016 2.028385 TCCTAGAAAAACGTCTCCAGGC 60.028 50.000 0.00 0.00 0.00 4.85
2821 3022 3.369546 AAAACGTCTCCAGGCAATTTG 57.630 42.857 0.00 0.00 0.00 2.32
2854 3055 3.282021 CACCCATGAGAGGTATGGTTTG 58.718 50.000 0.00 0.00 42.85 2.93
2859 3060 2.972625 TGAGAGGTATGGTTTGCTTCG 58.027 47.619 0.00 0.00 0.00 3.79
2934 3135 9.851686 TGAAAGCATAATTATCATGTACTTCCT 57.148 29.630 0.00 0.00 0.00 3.36
2936 3137 8.854614 AAGCATAATTATCATGTACTTCCTCC 57.145 34.615 0.00 0.00 0.00 4.30
2937 3138 7.099764 AGCATAATTATCATGTACTTCCTCCG 58.900 38.462 0.00 0.00 0.00 4.63
2938 3139 6.874134 GCATAATTATCATGTACTTCCTCCGT 59.126 38.462 0.00 0.00 0.00 4.69
2939 3140 8.033038 GCATAATTATCATGTACTTCCTCCGTA 58.967 37.037 0.00 0.00 0.00 4.02
2940 3141 9.923143 CATAATTATCATGTACTTCCTCCGTAA 57.077 33.333 0.00 0.00 0.00 3.18
2942 3143 8.888579 AATTATCATGTACTTCCTCCGTAAAG 57.111 34.615 0.00 0.00 0.00 1.85
2943 3144 7.649533 TTATCATGTACTTCCTCCGTAAAGA 57.350 36.000 0.00 0.00 0.00 2.52
2944 3145 5.988310 TCATGTACTTCCTCCGTAAAGAA 57.012 39.130 0.00 0.00 0.00 2.52
2945 3146 6.349243 TCATGTACTTCCTCCGTAAAGAAA 57.651 37.500 0.00 0.00 0.00 2.52
2946 3147 6.942976 TCATGTACTTCCTCCGTAAAGAAAT 58.057 36.000 0.00 0.00 0.00 2.17
2947 3148 8.070034 TCATGTACTTCCTCCGTAAAGAAATA 57.930 34.615 0.00 0.00 0.00 1.40
2948 3149 8.701895 TCATGTACTTCCTCCGTAAAGAAATAT 58.298 33.333 0.00 0.00 0.00 1.28
2949 3150 9.976511 CATGTACTTCCTCCGTAAAGAAATATA 57.023 33.333 0.00 0.00 0.00 0.86
2954 3155 8.979534 ACTTCCTCCGTAAAGAAATATAAGAGT 58.020 33.333 0.00 0.00 0.00 3.24
2955 3156 9.250624 CTTCCTCCGTAAAGAAATATAAGAGTG 57.749 37.037 0.00 0.00 0.00 3.51
2956 3157 8.302515 TCCTCCGTAAAGAAATATAAGAGTGT 57.697 34.615 0.00 0.00 0.00 3.55
2957 3158 8.755977 TCCTCCGTAAAGAAATATAAGAGTGTT 58.244 33.333 0.00 0.00 0.00 3.32
2958 3159 9.379791 CCTCCGTAAAGAAATATAAGAGTGTTT 57.620 33.333 0.00 0.00 0.00 2.83
2986 3187 9.733219 GATAACTACTTTAGTGATCTAAACGCT 57.267 33.333 4.09 0.00 41.55 5.07
2987 3188 9.733219 ATAACTACTTTAGTGATCTAAACGCTC 57.267 33.333 0.00 0.00 40.05 5.03
2988 3189 7.393841 ACTACTTTAGTGATCTAAACGCTCT 57.606 36.000 0.00 0.00 40.05 4.09
2989 3190 7.828712 ACTACTTTAGTGATCTAAACGCTCTT 58.171 34.615 0.00 0.00 40.05 2.85
2990 3191 8.954350 ACTACTTTAGTGATCTAAACGCTCTTA 58.046 33.333 0.00 0.00 40.05 2.10
2991 3192 9.953697 CTACTTTAGTGATCTAAACGCTCTTAT 57.046 33.333 0.00 0.00 40.05 1.73
3006 3207 8.649973 AACGCTCTTATATTTCTTTACAGAGG 57.350 34.615 0.00 0.00 0.00 3.69
3007 3208 7.210873 ACGCTCTTATATTTCTTTACAGAGGG 58.789 38.462 8.36 8.36 42.53 4.30
3008 3209 7.069578 ACGCTCTTATATTTCTTTACAGAGGGA 59.930 37.037 14.96 0.00 40.49 4.20
3009 3210 7.596995 CGCTCTTATATTTCTTTACAGAGGGAG 59.403 40.741 4.76 0.00 40.49 4.30
3028 3233 7.569111 AGAGGGAGTATAGTATTGTTGGTGATT 59.431 37.037 0.00 0.00 0.00 2.57
3029 3234 7.509546 AGGGAGTATAGTATTGTTGGTGATTG 58.490 38.462 0.00 0.00 0.00 2.67
3113 3318 5.808366 TCAACTTCCTCTCAGCTCTAAAA 57.192 39.130 0.00 0.00 0.00 1.52
3149 3354 5.316987 CTGGAATTTTGAGGAAGTGTACCT 58.683 41.667 0.00 0.00 40.80 3.08
3934 4163 4.713946 GGCATGGTGACCGAGAAA 57.286 55.556 0.00 0.00 0.00 2.52
3937 4166 1.523758 GCATGGTGACCGAGAAAGTT 58.476 50.000 0.00 0.00 0.00 2.66
3950 4179 3.985925 CGAGAAAGTTTACGGCTACAACT 59.014 43.478 6.74 0.00 31.90 3.16
4149 4378 1.835483 CTAATGTGATGCTCCGCGGC 61.835 60.000 23.51 10.89 0.00 6.53
4188 4417 2.823196 TTCAGTTGCAGTGTTCGTTG 57.177 45.000 0.00 0.00 0.00 4.10
4226 4455 2.433970 CAGTTTGGGGTTGAAATGGTGT 59.566 45.455 0.00 0.00 0.00 4.16
4227 4456 2.433970 AGTTTGGGGTTGAAATGGTGTG 59.566 45.455 0.00 0.00 0.00 3.82
4250 4482 4.377431 GCAGTTGACAGAATACAGGTTTCG 60.377 45.833 0.00 0.00 0.00 3.46
4321 4557 4.258702 ACATGAGTACACCTTCAGACAC 57.741 45.455 0.00 0.00 0.00 3.67
4434 4676 1.814394 TGCAGCTGTCATGTTCAATCC 59.186 47.619 16.64 0.00 0.00 3.01
4437 4679 2.821378 CAGCTGTCATGTTCAATCCCAA 59.179 45.455 5.25 0.00 0.00 4.12
4447 4689 1.153449 CAATCCCAACGCGCCTAGA 60.153 57.895 5.73 0.00 0.00 2.43
4452 4694 0.377203 CCCAACGCGCCTAGAATTTC 59.623 55.000 5.73 0.00 0.00 2.17
4453 4695 1.083489 CCAACGCGCCTAGAATTTCA 58.917 50.000 5.73 0.00 0.00 2.69
4454 4696 1.670811 CCAACGCGCCTAGAATTTCAT 59.329 47.619 5.73 0.00 0.00 2.57
4455 4697 2.097466 CCAACGCGCCTAGAATTTCATT 59.903 45.455 5.73 0.00 0.00 2.57
4456 4698 3.427503 CCAACGCGCCTAGAATTTCATTT 60.428 43.478 5.73 0.00 0.00 2.32
4457 4699 3.675467 ACGCGCCTAGAATTTCATTTC 57.325 42.857 5.73 0.00 0.00 2.17
4480 4723 8.925161 TTCTTTTTCTTTTGTCACCTGTAATG 57.075 30.769 0.00 0.00 0.00 1.90
4481 4724 8.062065 TCTTTTTCTTTTGTCACCTGTAATGT 57.938 30.769 0.00 0.00 0.00 2.71
4550 4798 6.534634 ACTAGTGAACTTGGTTAAGCAAGAT 58.465 36.000 39.86 32.68 37.43 2.40
4567 4815 4.153117 GCAAGATGAACGAACATTCAGTCT 59.847 41.667 0.00 0.00 41.76 3.24
4671 4985 2.351738 GCATCCACCACAACTTTGTAGC 60.352 50.000 0.00 0.00 39.91 3.58
4694 5008 6.660521 AGCATGGTTTCTCTTGATACAAATCA 59.339 34.615 0.00 0.00 40.43 2.57
4783 5499 4.335315 TGGAAGCTTGACTTACAACTGTTG 59.665 41.667 18.44 18.44 46.68 3.33
4784 5500 3.971032 AGCTTGACTTACAACTGTTGC 57.029 42.857 19.82 4.47 34.56 4.17
4785 5501 2.287915 AGCTTGACTTACAACTGTTGCG 59.712 45.455 19.82 11.16 34.56 4.85
4805 5539 3.315191 GCGGCATAACAAATGTAGGATGT 59.685 43.478 0.00 0.00 0.00 3.06
4912 5682 5.412526 AAAACATGTTTTGCTGCATTCTG 57.587 34.783 30.64 0.07 40.84 3.02
4974 5744 8.593945 AAATTGTAGATAAAGAAATGGCAGGA 57.406 30.769 0.00 0.00 0.00 3.86
4975 5745 7.573968 ATTGTAGATAAAGAAATGGCAGGAC 57.426 36.000 0.00 0.00 0.00 3.85
4976 5746 6.061022 TGTAGATAAAGAAATGGCAGGACA 57.939 37.500 0.00 0.00 0.00 4.02
4977 5747 6.480763 TGTAGATAAAGAAATGGCAGGACAA 58.519 36.000 0.00 0.00 0.00 3.18
4979 5749 5.574188 AGATAAAGAAATGGCAGGACAACT 58.426 37.500 0.00 0.00 0.00 3.16
4980 5750 6.012745 AGATAAAGAAATGGCAGGACAACTT 58.987 36.000 0.00 0.00 0.00 2.66
4981 5751 6.494835 AGATAAAGAAATGGCAGGACAACTTT 59.505 34.615 0.00 0.00 0.00 2.66
4984 5754 4.469657 AGAAATGGCAGGACAACTTTACA 58.530 39.130 0.00 0.00 0.00 2.41
4985 5755 4.892934 AGAAATGGCAGGACAACTTTACAA 59.107 37.500 0.00 0.00 0.00 2.41
4986 5756 4.584327 AATGGCAGGACAACTTTACAAC 57.416 40.909 0.00 0.00 0.00 3.32
4987 5757 3.006112 TGGCAGGACAACTTTACAACA 57.994 42.857 0.00 0.00 0.00 3.33
4988 5758 3.561143 TGGCAGGACAACTTTACAACAT 58.439 40.909 0.00 0.00 0.00 2.71
4991 5761 4.202111 GGCAGGACAACTTTACAACATGTT 60.202 41.667 4.92 4.92 0.00 2.71
4993 5763 5.810074 GCAGGACAACTTTACAACATGTTTT 59.190 36.000 8.77 5.26 0.00 2.43
4994 5764 6.237808 GCAGGACAACTTTACAACATGTTTTG 60.238 38.462 8.77 12.12 0.00 2.44
4995 5765 5.810074 AGGACAACTTTACAACATGTTTTGC 59.190 36.000 8.77 6.38 0.00 3.68
4996 5766 5.810074 GGACAACTTTACAACATGTTTTGCT 59.190 36.000 8.77 1.54 0.00 3.91
4997 5767 6.237808 GGACAACTTTACAACATGTTTTGCTG 60.238 38.462 8.77 0.00 0.00 4.41
4998 5768 5.063312 ACAACTTTACAACATGTTTTGCTGC 59.937 36.000 8.77 0.00 0.00 5.25
4999 5769 4.753233 ACTTTACAACATGTTTTGCTGCA 58.247 34.783 8.77 0.00 0.00 4.41
5000 5770 5.358922 ACTTTACAACATGTTTTGCTGCAT 58.641 33.333 8.77 0.00 0.00 3.96
5001 5771 5.816777 ACTTTACAACATGTTTTGCTGCATT 59.183 32.000 8.77 0.00 0.00 3.56
5002 5772 5.903764 TTACAACATGTTTTGCTGCATTC 57.096 34.783 8.77 0.00 0.00 2.67
5005 5775 3.738830 ACATGTTTTGCTGCATTCTGT 57.261 38.095 1.84 0.72 0.00 3.41
5006 5776 4.852134 ACATGTTTTGCTGCATTCTGTA 57.148 36.364 1.84 0.00 0.00 2.74
5030 6426 5.047660 ACTTCAGACAGATGAGAAGTACACC 60.048 44.000 13.94 0.00 46.25 4.16
5031 6427 4.667573 TCAGACAGATGAGAAGTACACCT 58.332 43.478 0.00 0.00 0.00 4.00
5032 6428 5.080337 TCAGACAGATGAGAAGTACACCTT 58.920 41.667 0.00 0.00 35.59 3.50
5043 6439 4.955811 AAGTACACCTTCAGACACATGA 57.044 40.909 0.00 0.00 0.00 3.07
5044 6440 4.955811 AGTACACCTTCAGACACATGAA 57.044 40.909 0.00 0.00 37.60 2.57
5045 6441 5.290493 AGTACACCTTCAGACACATGAAA 57.710 39.130 0.00 0.00 38.66 2.69
5046 6442 5.680619 AGTACACCTTCAGACACATGAAAA 58.319 37.500 0.00 0.00 38.66 2.29
5047 6443 5.760253 AGTACACCTTCAGACACATGAAAAG 59.240 40.000 0.00 0.00 38.66 2.27
5048 6444 4.780815 ACACCTTCAGACACATGAAAAGA 58.219 39.130 0.00 0.00 38.66 2.52
5049 6445 5.192927 ACACCTTCAGACACATGAAAAGAA 58.807 37.500 0.00 0.00 38.66 2.52
5050 6446 5.297776 ACACCTTCAGACACATGAAAAGAAG 59.702 40.000 0.00 6.24 38.66 2.85
5051 6447 5.297776 CACCTTCAGACACATGAAAAGAAGT 59.702 40.000 0.00 0.00 38.66 3.01
5052 6448 6.483307 CACCTTCAGACACATGAAAAGAAGTA 59.517 38.462 0.00 0.00 38.66 2.24
5053 6449 6.483640 ACCTTCAGACACATGAAAAGAAGTAC 59.516 38.462 0.00 0.00 38.66 2.73
5054 6450 6.483307 CCTTCAGACACATGAAAAGAAGTACA 59.517 38.462 0.00 0.00 38.66 2.90
5055 6451 6.844696 TCAGACACATGAAAAGAAGTACAC 57.155 37.500 0.00 0.00 0.00 2.90
5056 6452 5.758296 TCAGACACATGAAAAGAAGTACACC 59.242 40.000 0.00 0.00 0.00 4.16
5057 6453 5.760253 CAGACACATGAAAAGAAGTACACCT 59.240 40.000 0.00 0.00 0.00 4.00
5058 6454 6.260936 CAGACACATGAAAAGAAGTACACCTT 59.739 38.462 0.00 0.00 35.59 3.50
5068 6464 3.340814 AAGTACACCTTCAGGCAGATG 57.659 47.619 0.00 0.00 39.32 2.90
5069 6465 2.540383 AGTACACCTTCAGGCAGATGA 58.460 47.619 0.00 0.00 39.32 2.92
5070 6466 2.906389 AGTACACCTTCAGGCAGATGAA 59.094 45.455 0.00 0.00 39.32 2.57
5071 6467 2.191128 ACACCTTCAGGCAGATGAAC 57.809 50.000 0.00 0.00 39.32 3.18
5072 6468 1.701847 ACACCTTCAGGCAGATGAACT 59.298 47.619 0.00 0.00 39.32 3.01
5127 6523 5.420104 AGAAATGGCAACCATCTCCTTTTAG 59.580 40.000 0.00 0.00 44.40 1.85
5128 6524 4.591321 ATGGCAACCATCTCCTTTTAGA 57.409 40.909 0.00 0.00 40.74 2.10
5129 6525 3.955471 TGGCAACCATCTCCTTTTAGAG 58.045 45.455 0.00 0.00 35.04 2.43
5130 6526 2.685388 GGCAACCATCTCCTTTTAGAGC 59.315 50.000 0.00 0.00 33.66 4.09
5131 6527 3.347216 GCAACCATCTCCTTTTAGAGCA 58.653 45.455 0.00 0.00 33.66 4.26
5132 6528 3.950395 GCAACCATCTCCTTTTAGAGCAT 59.050 43.478 0.00 0.00 33.66 3.79
5133 6529 4.036144 GCAACCATCTCCTTTTAGAGCATC 59.964 45.833 0.00 0.00 33.66 3.91
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 8.265108 AGTTTAGGGGAGGATAATCTTCTTAC 57.735 38.462 0.00 0.00 0.00 2.34
3 4 8.871570 TTAGTTTAGGGGAGGATAATCTTCTT 57.128 34.615 0.00 0.00 0.00 2.52
4 5 8.074991 ACTTAGTTTAGGGGAGGATAATCTTCT 58.925 37.037 0.00 0.00 0.00 2.85
5 6 8.265108 ACTTAGTTTAGGGGAGGATAATCTTC 57.735 38.462 0.00 0.00 0.00 2.87
6 7 8.074991 AGACTTAGTTTAGGGGAGGATAATCTT 58.925 37.037 0.00 0.00 0.00 2.40
7 8 7.606581 AGACTTAGTTTAGGGGAGGATAATCT 58.393 38.462 0.00 0.00 0.00 2.40
8 9 7.859026 AGACTTAGTTTAGGGGAGGATAATC 57.141 40.000 0.00 0.00 0.00 1.75
9 10 9.382307 CTAAGACTTAGTTTAGGGGAGGATAAT 57.618 37.037 13.26 0.00 0.00 1.28
10 11 8.572221 TCTAAGACTTAGTTTAGGGGAGGATAA 58.428 37.037 19.39 0.00 34.81 1.75
11 12 8.122646 TCTAAGACTTAGTTTAGGGGAGGATA 57.877 38.462 19.39 0.00 34.81 2.59
12 13 6.994582 TCTAAGACTTAGTTTAGGGGAGGAT 58.005 40.000 19.39 0.00 34.81 3.24
13 14 6.413129 TCTAAGACTTAGTTTAGGGGAGGA 57.587 41.667 19.39 0.00 34.81 3.71
14 15 7.678207 ATTCTAAGACTTAGTTTAGGGGAGG 57.322 40.000 19.39 0.00 34.81 4.30
15 16 7.496263 GCAATTCTAAGACTTAGTTTAGGGGAG 59.504 40.741 19.39 5.91 34.81 4.30
16 17 7.037873 TGCAATTCTAAGACTTAGTTTAGGGGA 60.038 37.037 19.39 6.75 34.81 4.81
17 18 7.110155 TGCAATTCTAAGACTTAGTTTAGGGG 58.890 38.462 19.39 7.51 34.81 4.79
18 19 8.616076 CATGCAATTCTAAGACTTAGTTTAGGG 58.384 37.037 19.39 8.75 34.81 3.53
19 20 8.616076 CCATGCAATTCTAAGACTTAGTTTAGG 58.384 37.037 19.39 9.59 34.81 2.69
20 21 9.167311 ACCATGCAATTCTAAGACTTAGTTTAG 57.833 33.333 19.39 10.99 34.81 1.85
21 22 9.515226 AACCATGCAATTCTAAGACTTAGTTTA 57.485 29.630 19.39 8.84 34.81 2.01
22 23 8.299570 CAACCATGCAATTCTAAGACTTAGTTT 58.700 33.333 19.39 12.64 34.81 2.66
23 24 7.094205 CCAACCATGCAATTCTAAGACTTAGTT 60.094 37.037 19.39 7.10 34.81 2.24
24 25 6.375455 CCAACCATGCAATTCTAAGACTTAGT 59.625 38.462 19.39 1.33 34.81 2.24
25 26 6.678900 GCCAACCATGCAATTCTAAGACTTAG 60.679 42.308 15.03 15.03 34.52 2.18
26 27 5.125417 GCCAACCATGCAATTCTAAGACTTA 59.875 40.000 0.00 0.00 0.00 2.24
27 28 4.082026 GCCAACCATGCAATTCTAAGACTT 60.082 41.667 0.00 0.00 0.00 3.01
28 29 3.445096 GCCAACCATGCAATTCTAAGACT 59.555 43.478 0.00 0.00 0.00 3.24
29 30 3.445096 AGCCAACCATGCAATTCTAAGAC 59.555 43.478 0.00 0.00 0.00 3.01
30 31 3.700538 AGCCAACCATGCAATTCTAAGA 58.299 40.909 0.00 0.00 0.00 2.10
31 32 4.460948 AAGCCAACCATGCAATTCTAAG 57.539 40.909 0.00 0.00 0.00 2.18
32 33 4.888326 AAAGCCAACCATGCAATTCTAA 57.112 36.364 0.00 0.00 0.00 2.10
33 34 4.527816 AGAAAAGCCAACCATGCAATTCTA 59.472 37.500 0.00 0.00 35.50 2.10
34 35 3.325716 AGAAAAGCCAACCATGCAATTCT 59.674 39.130 0.00 0.00 33.70 2.40
35 36 3.667360 AGAAAAGCCAACCATGCAATTC 58.333 40.909 0.00 0.00 0.00 2.17
36 37 3.775261 AGAAAAGCCAACCATGCAATT 57.225 38.095 0.00 0.00 0.00 2.32
37 38 3.775261 AAGAAAAGCCAACCATGCAAT 57.225 38.095 0.00 0.00 0.00 3.56
38 39 3.465871 GAAAGAAAAGCCAACCATGCAA 58.534 40.909 0.00 0.00 0.00 4.08
39 40 2.224257 GGAAAGAAAAGCCAACCATGCA 60.224 45.455 0.00 0.00 0.00 3.96
40 41 2.037641 AGGAAAGAAAAGCCAACCATGC 59.962 45.455 0.00 0.00 0.00 4.06
41 42 3.575687 AGAGGAAAGAAAAGCCAACCATG 59.424 43.478 0.00 0.00 0.00 3.66
42 43 3.829026 GAGAGGAAAGAAAAGCCAACCAT 59.171 43.478 0.00 0.00 0.00 3.55
43 44 3.117512 AGAGAGGAAAGAAAAGCCAACCA 60.118 43.478 0.00 0.00 0.00 3.67
44 45 3.491342 AGAGAGGAAAGAAAAGCCAACC 58.509 45.455 0.00 0.00 0.00 3.77
45 46 4.393834 AGAGAGAGGAAAGAAAAGCCAAC 58.606 43.478 0.00 0.00 0.00 3.77
46 47 4.103153 TGAGAGAGAGGAAAGAAAAGCCAA 59.897 41.667 0.00 0.00 0.00 4.52
47 48 3.648067 TGAGAGAGAGGAAAGAAAAGCCA 59.352 43.478 0.00 0.00 0.00 4.75
48 49 4.278975 TGAGAGAGAGGAAAGAAAAGCC 57.721 45.455 0.00 0.00 0.00 4.35
85 86 3.027412 CAGAGATCGAGGAAAGAAGGGA 58.973 50.000 0.00 0.00 0.00 4.20
93 94 0.820226 CACCAGCAGAGATCGAGGAA 59.180 55.000 0.00 0.00 0.00 3.36
94 95 0.034089 TCACCAGCAGAGATCGAGGA 60.034 55.000 0.00 0.00 0.00 3.71
108 109 2.668632 GAATCCACGGGCTCACCA 59.331 61.111 0.00 0.00 40.22 4.17
111 112 4.467084 GGCGAATCCACGGGCTCA 62.467 66.667 0.00 0.00 34.01 4.26
261 276 0.617535 TTGAGAAGGATCGGAGCCCA 60.618 55.000 9.01 0.00 0.00 5.36
283 298 4.992319 TGTCTAATCAGTACCAACAAACGG 59.008 41.667 0.00 0.00 0.00 4.44
294 309 6.056236 ACGTCAGAGCTATGTCTAATCAGTA 58.944 40.000 8.44 0.00 0.00 2.74
297 312 6.289064 TCTACGTCAGAGCTATGTCTAATCA 58.711 40.000 8.44 0.00 0.00 2.57
307 322 2.619177 GCAGGAATCTACGTCAGAGCTA 59.381 50.000 0.00 0.00 36.48 3.32
338 353 2.024871 CTCTAACCTCGCCGCTCG 59.975 66.667 0.00 0.00 40.15 5.03
340 355 0.108756 GAAACTCTAACCTCGCCGCT 60.109 55.000 0.00 0.00 0.00 5.52
412 427 2.232941 AGTCGTCGCCTTTGAATCCTTA 59.767 45.455 0.00 0.00 0.00 2.69
613 628 2.907634 TCACCGAAAGTACAAAGCACA 58.092 42.857 0.00 0.00 0.00 4.57
676 691 7.987268 TTGTCTACGCTCAAGATGTATAAAG 57.013 36.000 0.00 0.00 0.00 1.85
679 694 6.490381 AGGATTGTCTACGCTCAAGATGTATA 59.510 38.462 0.00 0.00 0.00 1.47
680 695 5.303078 AGGATTGTCTACGCTCAAGATGTAT 59.697 40.000 0.00 0.00 0.00 2.29
681 696 4.645136 AGGATTGTCTACGCTCAAGATGTA 59.355 41.667 0.00 0.00 0.00 2.29
724 740 2.432628 CGTCACCTCCGGTCTTGC 60.433 66.667 0.00 0.00 31.02 4.01
773 797 0.554792 CCAATGGAAGGGAGGCTCAT 59.445 55.000 17.69 0.61 0.00 2.90
775 799 0.106967 GACCAATGGAAGGGAGGCTC 60.107 60.000 6.16 5.78 0.00 4.70
777 801 1.076705 GGACCAATGGAAGGGAGGC 60.077 63.158 6.16 0.00 0.00 4.70
779 803 1.452108 GCGGACCAATGGAAGGGAG 60.452 63.158 6.16 0.00 0.00 4.30
780 804 2.674754 GCGGACCAATGGAAGGGA 59.325 61.111 6.16 0.00 0.00 4.20
781 805 2.824041 CGCGGACCAATGGAAGGG 60.824 66.667 6.16 1.09 0.00 3.95
805 829 1.061411 CTGTCGGCATGCGTGATTG 59.939 57.895 12.44 5.64 0.00 2.67
806 830 0.955428 AACTGTCGGCATGCGTGATT 60.955 50.000 12.44 1.10 0.00 2.57
807 831 0.955428 AAACTGTCGGCATGCGTGAT 60.955 50.000 12.44 0.00 0.00 3.06
808 832 0.319986 TAAACTGTCGGCATGCGTGA 60.320 50.000 12.44 9.49 0.00 4.35
809 833 0.179225 GTAAACTGTCGGCATGCGTG 60.179 55.000 12.44 6.93 0.00 5.34
827 851 2.997897 GACGAGGGGCAGGACAGT 60.998 66.667 0.00 0.00 0.00 3.55
846 874 0.675083 TCGGAGCAACCAACGACTAA 59.325 50.000 0.00 0.00 38.90 2.24
856 884 0.526211 GGGTGGAAAATCGGAGCAAC 59.474 55.000 0.00 0.00 0.00 4.17
963 997 3.382832 AAGGCCTCGTCCGGTCTG 61.383 66.667 5.23 0.00 38.26 3.51
965 999 4.452733 CCAAGGCCTCGTCCGGTC 62.453 72.222 5.23 0.00 0.00 4.79
978 1012 2.124942 GAGGAGCGGAAGGCCAAG 60.125 66.667 5.01 0.00 45.17 3.61
979 1013 3.717294 GGAGGAGCGGAAGGCCAA 61.717 66.667 5.01 0.00 45.17 4.52
1035 1069 2.091055 TGGAATCGAAGGGAGAGGAGAT 60.091 50.000 0.00 0.00 0.00 2.75
1064 1098 2.590073 CCTGACGAAGCTATCTATGCG 58.410 52.381 0.00 0.00 35.28 4.73
1095 1129 7.604164 CAGCTGGTGTATAAGAGAGAAAAGAAA 59.396 37.037 5.57 0.00 0.00 2.52
1096 1130 7.099764 CAGCTGGTGTATAAGAGAGAAAAGAA 58.900 38.462 5.57 0.00 0.00 2.52
1097 1131 6.211584 ACAGCTGGTGTATAAGAGAGAAAAGA 59.788 38.462 19.93 0.00 37.75 2.52
1098 1132 6.402222 ACAGCTGGTGTATAAGAGAGAAAAG 58.598 40.000 19.93 0.00 37.75 2.27
1105 1139 3.372954 GCGTACAGCTGGTGTATAAGAG 58.627 50.000 21.04 12.02 43.70 2.85
1113 1147 0.388134 ACTAACGCGTACAGCTGGTG 60.388 55.000 19.93 9.55 45.59 4.17
1116 1150 1.683790 GCCACTAACGCGTACAGCTG 61.684 60.000 14.46 13.48 45.59 4.24
1129 1163 2.156098 GGAACCAAATGAACGCCACTA 58.844 47.619 0.00 0.00 0.00 2.74
1131 1165 3.489813 GGAACCAAATGAACGCCAC 57.510 52.632 0.00 0.00 0.00 5.01
1146 1180 2.101917 CCTAATTAACTCGAGGCGGGAA 59.898 50.000 18.41 3.41 0.00 3.97
1147 1181 1.684983 CCTAATTAACTCGAGGCGGGA 59.315 52.381 18.41 0.00 0.00 5.14
1152 1186 4.402056 TCTTGGCCTAATTAACTCGAGG 57.598 45.455 18.41 0.00 0.00 4.63
1183 1217 4.508124 GGGTAACGCATAGAATCAGTGAAG 59.492 45.833 0.00 0.00 37.60 3.02
1194 1228 0.101040 TTCGACCGGGTAACGCATAG 59.899 55.000 6.32 0.00 42.52 2.23
1265 1309 4.707105 CATTGCCCAGATACACATCTACA 58.293 43.478 0.00 0.00 39.62 2.74
1281 1325 0.174162 GTCCACCTGAATGCATTGCC 59.826 55.000 18.59 3.68 0.00 4.52
1303 1358 1.176527 CATTCCCCAAACGCACATCT 58.823 50.000 0.00 0.00 0.00 2.90
1340 1395 1.699054 CCTGGATCAGATTCGGCCCA 61.699 60.000 0.00 0.00 32.44 5.36
1344 1399 0.032678 CGTCCCTGGATCAGATTCGG 59.967 60.000 0.00 0.00 32.44 4.30
1345 1400 0.598680 GCGTCCCTGGATCAGATTCG 60.599 60.000 0.00 0.00 32.44 3.34
1445 1525 1.269309 GCAGCCTCACAGATACTACCG 60.269 57.143 0.00 0.00 0.00 4.02
1485 1571 6.317642 GTCTCACTTGAATCTCTAGCACTCTA 59.682 42.308 0.00 0.00 0.00 2.43
1489 1575 4.101942 CGTCTCACTTGAATCTCTAGCAC 58.898 47.826 0.00 0.00 0.00 4.40
1572 1667 3.710209 AGAGGGTGACAATGGAAGAAG 57.290 47.619 0.00 0.00 0.00 2.85
1590 1685 4.044571 ACATCAGAATCCCAAAAGGGAAGA 59.955 41.667 7.43 4.38 41.79 2.87
1601 1696 3.845781 TTCAGGCTACATCAGAATCCC 57.154 47.619 0.00 0.00 0.00 3.85
1695 1793 8.462016 CCATCTAAAACAAAGCTATATATGCCC 58.538 37.037 0.00 0.00 0.00 5.36
1743 1841 4.020485 TGGAACTGAAACTTAGGACCTAGC 60.020 45.833 0.48 0.00 0.00 3.42
1896 1997 7.197703 TCATGCTTCAAACTGTATGCATAATG 58.802 34.615 8.28 6.82 38.82 1.90
1904 2050 6.925165 CCTGTTTTTCATGCTTCAAACTGTAT 59.075 34.615 0.00 0.00 31.59 2.29
1997 2143 7.539712 ACGGTTGTAATGAATGAATACTGAG 57.460 36.000 0.00 0.00 0.00 3.35
2062 2208 6.422449 GTGTCTCACATGTGCACAGTATGC 62.422 50.000 25.84 11.81 43.65 3.14
2150 2299 6.488006 ACAGCAGAGTAAACATGTTTCAATCT 59.512 34.615 26.46 22.19 34.23 2.40
2172 2321 6.122277 AGGTAAACATTCCATATCCACACAG 58.878 40.000 0.00 0.00 0.00 3.66
2746 2947 3.404899 CCCAATCAACAAGCTTGCAAAT 58.595 40.909 26.27 13.51 0.00 2.32
2806 3007 0.890683 CACCCAAATTGCCTGGAGAC 59.109 55.000 0.00 0.00 35.85 3.36
2815 3016 1.070175 GTGTCGTCGTCACCCAAATTG 60.070 52.381 10.95 0.00 0.00 2.32
2922 3123 5.988310 TTCTTTACGGAGGAAGTACATGA 57.012 39.130 0.00 0.00 0.00 3.07
2928 3129 8.979534 ACTCTTATATTTCTTTACGGAGGAAGT 58.020 33.333 0.00 0.00 0.00 3.01
2929 3130 9.250624 CACTCTTATATTTCTTTACGGAGGAAG 57.749 37.037 0.00 0.00 0.00 3.46
2930 3131 8.755977 ACACTCTTATATTTCTTTACGGAGGAA 58.244 33.333 0.00 0.00 0.00 3.36
2931 3132 8.302515 ACACTCTTATATTTCTTTACGGAGGA 57.697 34.615 0.00 0.00 0.00 3.71
2932 3133 8.943909 AACACTCTTATATTTCTTTACGGAGG 57.056 34.615 0.00 0.00 0.00 4.30
2959 3160 9.733219 GCGTTTAGATCACTAAAGTAGTTATCT 57.267 33.333 13.75 13.75 46.18 1.98
2960 3161 9.733219 AGCGTTTAGATCACTAAAGTAGTTATC 57.267 33.333 0.00 2.65 45.42 1.75
2961 3162 9.733219 GAGCGTTTAGATCACTAAAGTAGTTAT 57.267 33.333 0.00 0.00 45.42 1.89
2962 3163 8.954350 AGAGCGTTTAGATCACTAAAGTAGTTA 58.046 33.333 0.00 0.00 45.42 2.24
2963 3164 7.828712 AGAGCGTTTAGATCACTAAAGTAGTT 58.171 34.615 0.00 0.00 45.42 2.24
2964 3165 7.393841 AGAGCGTTTAGATCACTAAAGTAGT 57.606 36.000 0.00 0.00 45.42 2.73
2965 3166 9.953697 ATAAGAGCGTTTAGATCACTAAAGTAG 57.046 33.333 0.00 0.00 45.42 2.57
2980 3181 9.099454 CCTCTGTAAAGAAATATAAGAGCGTTT 57.901 33.333 0.00 0.00 0.00 3.60
2981 3182 7.711339 CCCTCTGTAAAGAAATATAAGAGCGTT 59.289 37.037 0.00 0.00 0.00 4.84
2982 3183 7.069578 TCCCTCTGTAAAGAAATATAAGAGCGT 59.930 37.037 0.00 0.00 0.00 5.07
2983 3184 7.434492 TCCCTCTGTAAAGAAATATAAGAGCG 58.566 38.462 0.00 0.00 0.00 5.03
2984 3185 8.425703 ACTCCCTCTGTAAAGAAATATAAGAGC 58.574 37.037 0.00 0.00 0.00 4.09
2994 3195 9.710818 ACAATACTATACTCCCTCTGTAAAGAA 57.289 33.333 0.00 0.00 0.00 2.52
2995 3196 9.710818 AACAATACTATACTCCCTCTGTAAAGA 57.289 33.333 0.00 0.00 0.00 2.52
2996 3197 9.751542 CAACAATACTATACTCCCTCTGTAAAG 57.248 37.037 0.00 0.00 0.00 1.85
2997 3198 8.701895 CCAACAATACTATACTCCCTCTGTAAA 58.298 37.037 0.00 0.00 0.00 2.01
2998 3199 7.842743 ACCAACAATACTATACTCCCTCTGTAA 59.157 37.037 0.00 0.00 0.00 2.41
2999 3200 7.287005 CACCAACAATACTATACTCCCTCTGTA 59.713 40.741 0.00 0.00 0.00 2.74
3000 3201 6.098409 CACCAACAATACTATACTCCCTCTGT 59.902 42.308 0.00 0.00 0.00 3.41
3001 3202 6.323996 TCACCAACAATACTATACTCCCTCTG 59.676 42.308 0.00 0.00 0.00 3.35
3002 3203 6.441222 TCACCAACAATACTATACTCCCTCT 58.559 40.000 0.00 0.00 0.00 3.69
3003 3204 6.726490 TCACCAACAATACTATACTCCCTC 57.274 41.667 0.00 0.00 0.00 4.30
3004 3205 7.347222 TCAATCACCAACAATACTATACTCCCT 59.653 37.037 0.00 0.00 0.00 4.20
3005 3206 7.506114 TCAATCACCAACAATACTATACTCCC 58.494 38.462 0.00 0.00 0.00 4.30
3006 3207 8.204836 ACTCAATCACCAACAATACTATACTCC 58.795 37.037 0.00 0.00 0.00 3.85
3007 3208 9.035607 CACTCAATCACCAACAATACTATACTC 57.964 37.037 0.00 0.00 0.00 2.59
3008 3209 7.495934 GCACTCAATCACCAACAATACTATACT 59.504 37.037 0.00 0.00 0.00 2.12
3009 3210 7.495934 AGCACTCAATCACCAACAATACTATAC 59.504 37.037 0.00 0.00 0.00 1.47
3028 3233 6.882610 ACAGAAAATAAATGTCAGCACTCA 57.117 33.333 0.00 0.00 0.00 3.41
3029 3234 8.579682 AAAACAGAAAATAAATGTCAGCACTC 57.420 30.769 0.00 0.00 0.00 3.51
3066 3271 5.472148 TGAGAAAAGTTGCAAGCATAATGG 58.528 37.500 0.00 0.00 0.00 3.16
3149 3354 8.250332 ACACATCAGCTTAGAAAAAGAAAACAA 58.750 29.630 0.00 0.00 0.00 2.83
3934 4163 4.748600 GTCTTTGAGTTGTAGCCGTAAACT 59.251 41.667 0.00 0.00 36.87 2.66
3937 4166 3.311106 CGTCTTTGAGTTGTAGCCGTAA 58.689 45.455 0.00 0.00 0.00 3.18
3950 4179 1.808411 GCCAGATTCACCGTCTTTGA 58.192 50.000 0.00 0.00 0.00 2.69
4115 4344 3.118112 CACATTAGCTCCAGATCCTTGGT 60.118 47.826 0.00 0.00 39.35 3.67
4166 4395 3.338818 ACGAACACTGCAACTGAAATG 57.661 42.857 0.00 0.00 0.00 2.32
4167 4396 3.376859 TCAACGAACACTGCAACTGAAAT 59.623 39.130 0.00 0.00 0.00 2.17
4188 4417 4.946784 AACTGAATCAACTAACCGCATC 57.053 40.909 0.00 0.00 0.00 3.91
4226 4455 3.769739 ACCTGTATTCTGTCAACTGCA 57.230 42.857 0.00 0.00 0.00 4.41
4227 4456 4.377431 CGAAACCTGTATTCTGTCAACTGC 60.377 45.833 0.00 0.00 0.00 4.40
4250 4482 3.883830 TCTCATCTGTCTGAAGAAGGC 57.116 47.619 0.00 0.00 0.00 4.35
4321 4557 5.416083 TCTACCCGTGTATTTCTTGTCATG 58.584 41.667 0.00 0.00 0.00 3.07
4434 4676 1.083489 TGAAATTCTAGGCGCGTTGG 58.917 50.000 8.36 1.93 0.00 3.77
4437 4679 3.270877 AGAAATGAAATTCTAGGCGCGT 58.729 40.909 8.43 8.08 37.88 6.01
4452 4694 7.832503 ACAGGTGACAAAAGAAAAAGAAATG 57.167 32.000 0.00 0.00 0.00 2.32
4454 4696 9.364989 CATTACAGGTGACAAAAGAAAAAGAAA 57.635 29.630 0.00 0.00 0.00 2.52
4455 4697 8.527810 ACATTACAGGTGACAAAAGAAAAAGAA 58.472 29.630 0.00 0.00 0.00 2.52
4456 4698 8.062065 ACATTACAGGTGACAAAAGAAAAAGA 57.938 30.769 0.00 0.00 0.00 2.52
4457 4699 8.594687 CAACATTACAGGTGACAAAAGAAAAAG 58.405 33.333 0.00 0.00 0.00 2.27
4471 4714 9.965824 CTAAAAATTCAGTTCAACATTACAGGT 57.034 29.630 0.00 0.00 0.00 4.00
4480 4723 9.617975 CCTCTTCATCTAAAAATTCAGTTCAAC 57.382 33.333 0.00 0.00 0.00 3.18
4481 4724 8.796475 CCCTCTTCATCTAAAAATTCAGTTCAA 58.204 33.333 0.00 0.00 0.00 2.69
4550 4798 4.053469 TGTCAGACTGAATGTTCGTTCA 57.947 40.909 6.76 7.16 36.70 3.18
4567 4815 4.832266 AGGCAAATACAAATCCAGTTGTCA 59.168 37.500 0.00 0.00 40.85 3.58
4671 4985 7.919091 CCATGATTTGTATCAAGAGAAACCATG 59.081 37.037 0.00 0.00 43.67 3.66
4766 5482 2.602217 GCCGCAACAGTTGTAAGTCAAG 60.602 50.000 14.88 0.00 36.66 3.02
4771 5487 3.058570 TGTTATGCCGCAACAGTTGTAAG 60.059 43.478 14.88 6.83 32.32 2.34
4772 5488 2.879026 TGTTATGCCGCAACAGTTGTAA 59.121 40.909 14.88 2.57 32.32 2.41
4783 5499 3.315191 ACATCCTACATTTGTTATGCCGC 59.685 43.478 0.00 0.00 0.00 6.53
4784 5500 5.989168 TCTACATCCTACATTTGTTATGCCG 59.011 40.000 0.00 0.00 0.00 5.69
4785 5501 7.801716 TTCTACATCCTACATTTGTTATGCC 57.198 36.000 0.00 0.00 0.00 4.40
4805 5539 8.884323 AGATTTAGTTCATGGCCTGATATTCTA 58.116 33.333 3.32 4.20 32.72 2.10
4954 5724 6.599638 AGTTGTCCTGCCATTTCTTTATCTAC 59.400 38.462 0.00 0.00 0.00 2.59
4958 5728 6.670695 AAAGTTGTCCTGCCATTTCTTTAT 57.329 33.333 0.00 0.00 0.00 1.40
4959 5729 6.547880 TGTAAAGTTGTCCTGCCATTTCTTTA 59.452 34.615 0.00 0.00 0.00 1.85
4960 5730 5.362430 TGTAAAGTTGTCCTGCCATTTCTTT 59.638 36.000 0.00 0.00 0.00 2.52
4962 5732 4.469657 TGTAAAGTTGTCCTGCCATTTCT 58.530 39.130 0.00 0.00 0.00 2.52
4963 5733 4.846779 TGTAAAGTTGTCCTGCCATTTC 57.153 40.909 0.00 0.00 0.00 2.17
4964 5734 4.404073 TGTTGTAAAGTTGTCCTGCCATTT 59.596 37.500 0.00 0.00 0.00 2.32
4965 5735 3.957497 TGTTGTAAAGTTGTCCTGCCATT 59.043 39.130 0.00 0.00 0.00 3.16
4967 5737 3.006112 TGTTGTAAAGTTGTCCTGCCA 57.994 42.857 0.00 0.00 0.00 4.92
4968 5738 3.317993 ACATGTTGTAAAGTTGTCCTGCC 59.682 43.478 0.00 0.00 0.00 4.85
4969 5739 4.568152 ACATGTTGTAAAGTTGTCCTGC 57.432 40.909 0.00 0.00 0.00 4.85
4970 5740 6.237808 GCAAAACATGTTGTAAAGTTGTCCTG 60.238 38.462 12.82 0.00 0.00 3.86
4971 5741 5.810074 GCAAAACATGTTGTAAAGTTGTCCT 59.190 36.000 12.82 0.00 0.00 3.85
4972 5742 5.810074 AGCAAAACATGTTGTAAAGTTGTCC 59.190 36.000 12.82 0.63 0.00 4.02
4973 5743 6.695245 CAGCAAAACATGTTGTAAAGTTGTC 58.305 36.000 12.82 7.97 35.69 3.18
4974 5744 5.063312 GCAGCAAAACATGTTGTAAAGTTGT 59.937 36.000 12.82 0.72 41.84 3.32
4975 5745 5.063186 TGCAGCAAAACATGTTGTAAAGTTG 59.937 36.000 12.82 12.40 41.84 3.16
4976 5746 5.174395 TGCAGCAAAACATGTTGTAAAGTT 58.826 33.333 12.82 0.00 41.84 2.66
4977 5747 4.753233 TGCAGCAAAACATGTTGTAAAGT 58.247 34.783 12.82 0.00 41.84 2.66
4979 5749 6.018913 CAGAATGCAGCAAAACATGTTGTAAA 60.019 34.615 12.82 0.00 41.84 2.01
4980 5750 5.462729 CAGAATGCAGCAAAACATGTTGTAA 59.537 36.000 12.82 0.00 41.84 2.41
4981 5751 4.983538 CAGAATGCAGCAAAACATGTTGTA 59.016 37.500 12.82 0.00 41.84 2.41
4984 5754 4.062677 ACAGAATGCAGCAAAACATGTT 57.937 36.364 4.92 4.92 42.53 2.71
4985 5755 3.738830 ACAGAATGCAGCAAAACATGT 57.261 38.095 0.00 0.00 42.53 3.21
4986 5756 4.801891 AGTACAGAATGCAGCAAAACATG 58.198 39.130 0.00 0.00 42.53 3.21
4987 5757 5.009911 TGAAGTACAGAATGCAGCAAAACAT 59.990 36.000 0.00 0.00 42.53 2.71
4988 5758 4.337836 TGAAGTACAGAATGCAGCAAAACA 59.662 37.500 0.00 0.00 42.53 2.83
5002 5772 6.266168 ACTTCTCATCTGTCTGAAGTACAG 57.734 41.667 5.56 0.00 44.70 2.74
5005 5775 6.151312 GGTGTACTTCTCATCTGTCTGAAGTA 59.849 42.308 9.48 9.48 44.70 2.24
5006 5776 5.047660 GGTGTACTTCTCATCTGTCTGAAGT 60.048 44.000 11.17 11.17 46.99 3.01
5030 6426 7.348201 GTGTACTTCTTTTCATGTGTCTGAAG 58.652 38.462 12.71 12.71 36.55 3.02
5031 6427 6.260050 GGTGTACTTCTTTTCATGTGTCTGAA 59.740 38.462 0.00 0.00 33.42 3.02
5032 6428 5.758296 GGTGTACTTCTTTTCATGTGTCTGA 59.242 40.000 0.00 0.00 0.00 3.27
5033 6429 5.760253 AGGTGTACTTCTTTTCATGTGTCTG 59.240 40.000 0.00 0.00 0.00 3.51
5034 6430 5.930135 AGGTGTACTTCTTTTCATGTGTCT 58.070 37.500 0.00 0.00 0.00 3.41
5035 6431 6.619801 AAGGTGTACTTCTTTTCATGTGTC 57.380 37.500 0.00 0.00 32.85 3.67
5048 6444 2.906389 TCATCTGCCTGAAGGTGTACTT 59.094 45.455 0.00 0.00 43.65 2.24
5049 6445 2.540383 TCATCTGCCTGAAGGTGTACT 58.460 47.619 0.00 0.00 37.57 2.73
5050 6446 3.003480 GTTCATCTGCCTGAAGGTGTAC 58.997 50.000 0.00 0.00 35.88 2.90
5051 6447 2.906389 AGTTCATCTGCCTGAAGGTGTA 59.094 45.455 0.00 0.00 35.88 2.90
5052 6448 1.701847 AGTTCATCTGCCTGAAGGTGT 59.298 47.619 0.00 0.00 35.88 4.16
5053 6449 2.082231 CAGTTCATCTGCCTGAAGGTG 58.918 52.381 0.00 0.00 35.88 4.00
5054 6450 2.486472 CAGTTCATCTGCCTGAAGGT 57.514 50.000 0.00 0.00 35.88 3.50
5088 6484 9.807649 GTTGCCATTTCTTCATCTACAATTTAT 57.192 29.630 0.00 0.00 0.00 1.40
5089 6485 8.250332 GGTTGCCATTTCTTCATCTACAATTTA 58.750 33.333 0.00 0.00 0.00 1.40
5090 6486 7.099120 GGTTGCCATTTCTTCATCTACAATTT 58.901 34.615 0.00 0.00 0.00 1.82
5091 6487 6.211184 TGGTTGCCATTTCTTCATCTACAATT 59.789 34.615 0.00 0.00 0.00 2.32
5092 6488 5.716228 TGGTTGCCATTTCTTCATCTACAAT 59.284 36.000 0.00 0.00 0.00 2.71
5093 6489 5.076182 TGGTTGCCATTTCTTCATCTACAA 58.924 37.500 0.00 0.00 0.00 2.41
5094 6490 4.661222 TGGTTGCCATTTCTTCATCTACA 58.339 39.130 0.00 0.00 0.00 2.74


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.