Multiple sequence alignment - TraesCS5D01G473700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G473700 chr5D 100.000 2585 0 0 1 2585 513723271 513720687 0.000000e+00 4774.0
1 TraesCS5D01G473700 chr5D 94.000 650 37 2 1936 2583 335045440 335044791 0.000000e+00 983.0
2 TraesCS5D01G473700 chr5D 93.636 660 39 3 1928 2585 436111539 436112197 0.000000e+00 983.0
3 TraesCS5D01G473700 chr5D 85.912 937 100 17 1028 1935 513663517 513662584 0.000000e+00 970.0
4 TraesCS5D01G473700 chr5D 89.600 125 8 2 1028 1152 513694715 513694596 1.240000e-33 154.0
5 TraesCS5D01G473700 chr3D 94.785 652 32 2 1936 2585 79390396 79391047 0.000000e+00 1014.0
6 TraesCS5D01G473700 chr3D 91.192 193 12 4 666 854 306028957 306029148 9.180000e-65 257.0
7 TraesCS5D01G473700 chr5A 86.079 941 97 17 1025 1935 641591713 641590777 0.000000e+00 981.0
8 TraesCS5D01G473700 chr5A 89.637 579 31 9 1386 1935 641666734 641666156 0.000000e+00 710.0
9 TraesCS5D01G473700 chr5A 87.129 101 6 7 16 113 641670564 641670468 9.780000e-20 108.0
10 TraesCS5D01G473700 chr7D 93.874 653 35 5 1936 2585 426894428 426895078 0.000000e+00 979.0
11 TraesCS5D01G473700 chr6D 93.588 655 38 4 1934 2585 48913160 48913813 0.000000e+00 974.0
12 TraesCS5D01G473700 chr6D 93.568 653 39 3 1935 2585 65772883 65773534 0.000000e+00 970.0
13 TraesCS5D01G473700 chr6D 91.803 244 14 5 669 907 363243444 363243686 4.120000e-88 335.0
14 TraesCS5D01G473700 chr1D 93.588 655 39 3 1933 2585 254665826 254666479 0.000000e+00 974.0
15 TraesCS5D01G473700 chr2D 93.455 657 38 4 1931 2585 34688529 34689182 0.000000e+00 970.0
16 TraesCS5D01G473700 chr2D 73.597 303 69 7 1639 1931 28914873 28914572 3.520000e-19 106.0
17 TraesCS5D01G473700 chr4D 93.202 662 40 5 1927 2585 13018526 13019185 0.000000e+00 968.0
18 TraesCS5D01G473700 chr4D 88.362 232 19 7 689 914 362407651 362407880 3.280000e-69 272.0
19 TraesCS5D01G473700 chr4D 100.000 28 0 0 48 75 431412040 431412013 5.000000e-03 52.8
20 TraesCS5D01G473700 chr5B 84.968 938 107 18 1028 1935 644613194 644612261 0.000000e+00 920.0
21 TraesCS5D01G473700 chr5B 88.960 625 40 8 1340 1935 644844318 644843694 0.000000e+00 745.0
22 TraesCS5D01G473700 chr5B 90.102 394 28 7 934 1322 644844690 644844303 3.840000e-138 501.0
23 TraesCS5D01G473700 chr5B 88.980 245 20 7 668 907 45707991 45707749 1.940000e-76 296.0
24 TraesCS5D01G473700 chr5B 85.306 245 28 7 668 907 633769838 633770079 1.990000e-61 246.0
25 TraesCS5D01G473700 chr2B 74.695 901 171 37 1064 1927 797539231 797538351 5.290000e-92 348.0
26 TraesCS5D01G473700 chr2B 89.669 242 20 5 669 906 457730435 457730195 1.160000e-78 303.0
27 TraesCS5D01G473700 chr2B 76.080 301 59 9 1641 1930 46678283 46678581 7.460000e-31 145.0
28 TraesCS5D01G473700 chr2B 81.761 159 29 0 1768 1926 797718058 797717900 1.610000e-27 134.0
29 TraesCS5D01G473700 chr1A 88.066 243 23 5 669 906 553986997 553987238 1.510000e-72 283.0
30 TraesCS5D01G473700 chr1A 85.246 244 31 5 669 908 238677752 238677510 1.990000e-61 246.0
31 TraesCS5D01G473700 chr1B 86.122 245 28 5 669 908 162004616 162004859 2.550000e-65 259.0
32 TraesCS5D01G473700 chr1B 79.705 271 30 12 665 911 211478855 211479124 3.420000e-39 172.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G473700 chr5D 513720687 513723271 2584 True 4774 4774 100.000 1 2585 1 chr5D.!!$R4 2584
1 TraesCS5D01G473700 chr5D 335044791 335045440 649 True 983 983 94.000 1936 2583 1 chr5D.!!$R1 647
2 TraesCS5D01G473700 chr5D 436111539 436112197 658 False 983 983 93.636 1928 2585 1 chr5D.!!$F1 657
3 TraesCS5D01G473700 chr5D 513662584 513663517 933 True 970 970 85.912 1028 1935 1 chr5D.!!$R2 907
4 TraesCS5D01G473700 chr3D 79390396 79391047 651 False 1014 1014 94.785 1936 2585 1 chr3D.!!$F1 649
5 TraesCS5D01G473700 chr5A 641590777 641591713 936 True 981 981 86.079 1025 1935 1 chr5A.!!$R1 910
6 TraesCS5D01G473700 chr5A 641666156 641670564 4408 True 409 710 88.383 16 1935 2 chr5A.!!$R2 1919
7 TraesCS5D01G473700 chr7D 426894428 426895078 650 False 979 979 93.874 1936 2585 1 chr7D.!!$F1 649
8 TraesCS5D01G473700 chr6D 48913160 48913813 653 False 974 974 93.588 1934 2585 1 chr6D.!!$F1 651
9 TraesCS5D01G473700 chr6D 65772883 65773534 651 False 970 970 93.568 1935 2585 1 chr6D.!!$F2 650
10 TraesCS5D01G473700 chr1D 254665826 254666479 653 False 974 974 93.588 1933 2585 1 chr1D.!!$F1 652
11 TraesCS5D01G473700 chr2D 34688529 34689182 653 False 970 970 93.455 1931 2585 1 chr2D.!!$F1 654
12 TraesCS5D01G473700 chr4D 13018526 13019185 659 False 968 968 93.202 1927 2585 1 chr4D.!!$F1 658
13 TraesCS5D01G473700 chr5B 644612261 644613194 933 True 920 920 84.968 1028 1935 1 chr5B.!!$R2 907
14 TraesCS5D01G473700 chr5B 644843694 644844690 996 True 623 745 89.531 934 1935 2 chr5B.!!$R3 1001
15 TraesCS5D01G473700 chr2B 797538351 797539231 880 True 348 348 74.695 1064 1927 1 chr2B.!!$R2 863

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
679 2795 0.038526 CGTGCACGTACTCCTTCCTT 60.039 55.0 30.5 0.0 34.11 3.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1901 4960 0.822164 CGAACGACCCATAGGAACCT 59.178 55.0 0.0 0.0 36.73 3.5 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
95 96 6.548171 AGAAATGTGCATGCATTAAAAATGC 58.452 32.000 25.64 15.88 45.51 3.56
96 97 6.373216 AGAAATGTGCATGCATTAAAAATGCT 59.627 30.769 25.64 9.69 45.51 3.79
97 98 5.728351 ATGTGCATGCATTAAAAATGCTC 57.272 34.783 25.64 6.62 45.51 4.26
98 99 4.566987 TGTGCATGCATTAAAAATGCTCA 58.433 34.783 25.64 9.42 45.51 4.26
99 100 5.179533 TGTGCATGCATTAAAAATGCTCAT 58.820 33.333 25.64 8.41 45.51 2.90
100 101 5.064071 TGTGCATGCATTAAAAATGCTCATG 59.936 36.000 25.64 18.10 45.51 3.07
101 102 5.064198 GTGCATGCATTAAAAATGCTCATGT 59.936 36.000 25.64 4.47 45.51 3.21
102 103 6.256104 GTGCATGCATTAAAAATGCTCATGTA 59.744 34.615 25.64 15.19 45.51 2.29
103 104 6.477360 TGCATGCATTAAAAATGCTCATGTAG 59.523 34.615 18.46 8.00 45.51 2.74
104 105 6.477688 GCATGCATTAAAAATGCTCATGTAGT 59.522 34.615 21.43 0.62 44.79 2.73
105 106 7.648908 GCATGCATTAAAAATGCTCATGTAGTA 59.351 33.333 21.43 2.92 44.79 1.82
108 109 8.615211 TGCATTAAAAATGCTCATGTAGTAGAG 58.385 33.333 21.43 0.00 44.79 2.43
109 110 8.830580 GCATTAAAAATGCTCATGTAGTAGAGA 58.169 33.333 15.55 0.00 41.52 3.10
115 116 9.539825 AAAATGCTCATGTAGTAGAGAATACTG 57.460 33.333 0.00 0.00 29.87 2.74
116 117 6.641169 TGCTCATGTAGTAGAGAATACTGG 57.359 41.667 0.00 0.00 33.74 4.00
117 118 6.365520 TGCTCATGTAGTAGAGAATACTGGA 58.634 40.000 0.00 0.00 33.74 3.86
118 119 6.488344 TGCTCATGTAGTAGAGAATACTGGAG 59.512 42.308 0.00 0.00 33.74 3.86
119 120 6.072175 GCTCATGTAGTAGAGAATACTGGAGG 60.072 46.154 0.00 0.00 33.74 4.30
120 121 6.307776 TCATGTAGTAGAGAATACTGGAGGG 58.692 44.000 0.00 0.00 0.00 4.30
121 122 5.988865 TGTAGTAGAGAATACTGGAGGGA 57.011 43.478 0.00 0.00 0.00 4.20
122 123 6.337185 TGTAGTAGAGAATACTGGAGGGAA 57.663 41.667 0.00 0.00 0.00 3.97
123 124 6.366340 TGTAGTAGAGAATACTGGAGGGAAG 58.634 44.000 0.00 0.00 0.00 3.46
124 125 5.735733 AGTAGAGAATACTGGAGGGAAGA 57.264 43.478 0.00 0.00 0.00 2.87
125 126 6.093617 AGTAGAGAATACTGGAGGGAAGAA 57.906 41.667 0.00 0.00 0.00 2.52
126 127 6.133356 AGTAGAGAATACTGGAGGGAAGAAG 58.867 44.000 0.00 0.00 0.00 2.85
127 128 5.213868 AGAGAATACTGGAGGGAAGAAGA 57.786 43.478 0.00 0.00 0.00 2.87
128 129 5.594777 AGAGAATACTGGAGGGAAGAAGAA 58.405 41.667 0.00 0.00 0.00 2.52
129 130 5.660864 AGAGAATACTGGAGGGAAGAAGAAG 59.339 44.000 0.00 0.00 0.00 2.85
130 131 5.594777 AGAATACTGGAGGGAAGAAGAAGA 58.405 41.667 0.00 0.00 0.00 2.87
131 132 6.026186 AGAATACTGGAGGGAAGAAGAAGAA 58.974 40.000 0.00 0.00 0.00 2.52
132 133 6.502158 AGAATACTGGAGGGAAGAAGAAGAAA 59.498 38.462 0.00 0.00 0.00 2.52
133 134 4.359434 ACTGGAGGGAAGAAGAAGAAAC 57.641 45.455 0.00 0.00 0.00 2.78
134 135 3.073209 ACTGGAGGGAAGAAGAAGAAACC 59.927 47.826 0.00 0.00 0.00 3.27
135 136 2.375509 TGGAGGGAAGAAGAAGAAACCC 59.624 50.000 0.00 0.00 37.79 4.11
136 137 2.615747 GGAGGGAAGAAGAAGAAACCCG 60.616 54.545 0.00 0.00 41.81 5.28
141 142 4.386711 GGAAGAAGAAGAAACCCGAGAAA 58.613 43.478 0.00 0.00 0.00 2.52
204 1662 4.642445 AACCGGTACACAAAGAAAAAGG 57.358 40.909 8.00 0.00 0.00 3.11
210 1668 5.517411 CGGTACACAAAGAAAAAGGAAAACC 59.483 40.000 0.00 0.00 0.00 3.27
221 1679 3.720949 AAGGAAAACCGGTAAAACAGC 57.279 42.857 8.00 0.00 0.00 4.40
224 1682 3.702548 AGGAAAACCGGTAAAACAGCTTT 59.297 39.130 8.00 0.98 0.00 3.51
279 1737 9.533831 AATCAAGGTCCAAATATATGGGAATAC 57.466 33.333 7.72 3.34 41.05 1.89
280 1738 8.051468 TCAAGGTCCAAATATATGGGAATACA 57.949 34.615 7.72 0.00 41.05 2.29
281 1739 8.506921 TCAAGGTCCAAATATATGGGAATACAA 58.493 33.333 7.72 0.00 41.05 2.41
282 1740 9.312904 CAAGGTCCAAATATATGGGAATACAAT 57.687 33.333 7.72 0.00 41.05 2.71
283 1741 9.897040 AAGGTCCAAATATATGGGAATACAATT 57.103 29.630 7.72 0.00 41.05 2.32
284 1742 9.897040 AGGTCCAAATATATGGGAATACAATTT 57.103 29.630 7.72 0.00 41.05 1.82
314 1772 3.414269 TGGATTGAGGAACCGGTAAAAC 58.586 45.455 8.00 0.64 0.00 2.43
318 1776 1.162698 GAGGAACCGGTAAAACAGCC 58.837 55.000 8.00 0.83 0.00 4.85
322 1780 1.677052 GAACCGGTAAAACAGCCACAA 59.323 47.619 8.00 0.00 0.00 3.33
337 1795 2.351548 CAATCGCGCGCCATTCAG 60.352 61.111 27.95 10.02 0.00 3.02
338 1796 4.241999 AATCGCGCGCCATTCAGC 62.242 61.111 27.95 0.00 0.00 4.26
341 1799 4.285149 CGCGCGCCATTCAGCTAC 62.285 66.667 27.72 0.00 0.00 3.58
342 1800 3.941836 GCGCGCCATTCAGCTACC 61.942 66.667 23.24 0.00 0.00 3.18
343 1801 3.272334 CGCGCCATTCAGCTACCC 61.272 66.667 0.00 0.00 0.00 3.69
344 1802 2.190578 GCGCCATTCAGCTACCCT 59.809 61.111 0.00 0.00 0.00 4.34
354 2048 0.460311 CAGCTACCCTACTTGGACCG 59.540 60.000 0.00 0.00 38.35 4.79
358 2052 2.172229 TACCCTACTTGGACCGGCCT 62.172 60.000 14.76 0.00 38.35 5.19
359 2053 2.732619 CCCTACTTGGACCGGCCTC 61.733 68.421 14.76 0.00 38.35 4.70
360 2054 1.987855 CCTACTTGGACCGGCCTCA 60.988 63.158 14.76 2.46 38.35 3.86
361 2055 1.338136 CCTACTTGGACCGGCCTCAT 61.338 60.000 14.76 4.24 38.35 2.90
362 2056 0.179073 CTACTTGGACCGGCCTCATG 60.179 60.000 14.76 9.28 37.63 3.07
363 2057 2.252072 TACTTGGACCGGCCTCATGC 62.252 60.000 14.76 0.00 37.63 4.06
365 2059 3.626996 TTGGACCGGCCTCATGCAG 62.627 63.158 14.76 0.00 43.89 4.41
380 2074 4.073052 CAGGCCCTGCGTGTTTTA 57.927 55.556 0.00 0.00 39.23 1.52
381 2075 1.875963 CAGGCCCTGCGTGTTTTAG 59.124 57.895 0.00 0.00 39.23 1.85
382 2076 1.971695 AGGCCCTGCGTGTTTTAGC 60.972 57.895 0.00 0.00 0.00 3.09
383 2077 2.566529 GCCCTGCGTGTTTTAGCC 59.433 61.111 0.00 0.00 0.00 3.93
384 2078 2.265182 GCCCTGCGTGTTTTAGCCA 61.265 57.895 0.00 0.00 0.00 4.75
385 2079 1.579429 CCCTGCGTGTTTTAGCCAC 59.421 57.895 0.00 0.00 0.00 5.01
386 2080 1.169661 CCCTGCGTGTTTTAGCCACA 61.170 55.000 0.00 0.00 33.00 4.17
387 2081 0.238289 CCTGCGTGTTTTAGCCACAG 59.762 55.000 0.00 0.00 33.00 3.66
389 2083 1.333619 CTGCGTGTTTTAGCCACAGTT 59.666 47.619 0.00 0.00 33.00 3.16
393 2087 3.810373 CGTGTTTTAGCCACAGTTCATC 58.190 45.455 0.00 0.00 33.00 2.92
394 2088 3.664276 CGTGTTTTAGCCACAGTTCATCG 60.664 47.826 0.00 0.00 33.00 3.84
395 2089 2.225491 TGTTTTAGCCACAGTTCATCGC 59.775 45.455 0.00 0.00 0.00 4.58
396 2090 2.177394 TTTAGCCACAGTTCATCGCA 57.823 45.000 0.00 0.00 0.00 5.10
397 2091 1.725641 TTAGCCACAGTTCATCGCAG 58.274 50.000 0.00 0.00 0.00 5.18
398 2092 0.608130 TAGCCACAGTTCATCGCAGT 59.392 50.000 0.00 0.00 0.00 4.40
399 2093 0.952497 AGCCACAGTTCATCGCAGTG 60.952 55.000 0.00 0.00 0.00 3.66
400 2094 2.165380 CCACAGTTCATCGCAGTGG 58.835 57.895 0.00 0.00 43.14 4.00
401 2095 1.300971 CCACAGTTCATCGCAGTGGG 61.301 60.000 0.00 0.00 44.55 4.61
402 2096 1.672356 ACAGTTCATCGCAGTGGGC 60.672 57.895 1.51 0.00 39.90 5.36
403 2097 1.672030 CAGTTCATCGCAGTGGGCA 60.672 57.895 1.51 0.00 45.17 5.36
406 2100 0.109597 GTTCATCGCAGTGGGCAAAG 60.110 55.000 1.51 0.00 45.17 2.77
407 2101 0.250684 TTCATCGCAGTGGGCAAAGA 60.251 50.000 1.51 0.00 45.17 2.52
408 2102 0.250684 TCATCGCAGTGGGCAAAGAA 60.251 50.000 1.51 0.00 45.17 2.52
409 2103 0.813184 CATCGCAGTGGGCAAAGAAT 59.187 50.000 1.51 0.00 45.17 2.40
410 2104 0.813184 ATCGCAGTGGGCAAAGAATG 59.187 50.000 1.51 0.00 45.17 2.67
411 2105 1.213537 CGCAGTGGGCAAAGAATGG 59.786 57.895 0.00 0.00 45.17 3.16
412 2106 1.593265 GCAGTGGGCAAAGAATGGG 59.407 57.895 0.00 0.00 43.97 4.00
413 2107 0.899717 GCAGTGGGCAAAGAATGGGA 60.900 55.000 0.00 0.00 43.97 4.37
414 2108 1.631405 CAGTGGGCAAAGAATGGGAA 58.369 50.000 0.00 0.00 0.00 3.97
415 2109 1.969923 CAGTGGGCAAAGAATGGGAAA 59.030 47.619 0.00 0.00 0.00 3.13
416 2110 2.028748 CAGTGGGCAAAGAATGGGAAAG 60.029 50.000 0.00 0.00 0.00 2.62
417 2111 2.158325 AGTGGGCAAAGAATGGGAAAGA 60.158 45.455 0.00 0.00 0.00 2.52
418 2112 2.232208 GTGGGCAAAGAATGGGAAAGAG 59.768 50.000 0.00 0.00 0.00 2.85
419 2113 1.827344 GGGCAAAGAATGGGAAAGAGG 59.173 52.381 0.00 0.00 0.00 3.69
420 2114 1.205655 GGCAAAGAATGGGAAAGAGGC 59.794 52.381 0.00 0.00 0.00 4.70
421 2115 1.135286 GCAAAGAATGGGAAAGAGGCG 60.135 52.381 0.00 0.00 0.00 5.52
422 2116 2.436417 CAAAGAATGGGAAAGAGGCGA 58.564 47.619 0.00 0.00 0.00 5.54
423 2117 3.019564 CAAAGAATGGGAAAGAGGCGAT 58.980 45.455 0.00 0.00 0.00 4.58
424 2118 2.338577 AGAATGGGAAAGAGGCGATG 57.661 50.000 0.00 0.00 0.00 3.84
426 2120 0.753111 AATGGGAAAGAGGCGATGGC 60.753 55.000 0.00 0.00 38.90 4.40
427 2121 2.897350 GGGAAAGAGGCGATGGCG 60.897 66.667 0.00 0.00 41.24 5.69
429 2123 1.227674 GGAAAGAGGCGATGGCGAT 60.228 57.895 0.00 0.00 41.24 4.58
431 2125 0.530650 GAAAGAGGCGATGGCGATGA 60.531 55.000 0.00 0.00 41.24 2.92
433 2127 1.680522 AAGAGGCGATGGCGATGAGT 61.681 55.000 0.00 0.00 41.24 3.41
434 2128 1.953138 GAGGCGATGGCGATGAGTG 60.953 63.158 0.00 0.00 41.24 3.51
435 2129 2.969238 GGCGATGGCGATGAGTGG 60.969 66.667 0.00 0.00 41.24 4.00
436 2130 3.643978 GCGATGGCGATGAGTGGC 61.644 66.667 0.00 0.00 40.82 5.01
437 2131 2.107750 CGATGGCGATGAGTGGCT 59.892 61.111 0.00 0.00 40.82 4.75
439 2133 1.144716 GATGGCGATGAGTGGCTGA 59.855 57.895 0.00 0.00 0.00 4.26
441 2135 2.887568 GGCGATGAGTGGCTGACG 60.888 66.667 0.00 0.00 0.00 4.35
442 2136 2.887568 GCGATGAGTGGCTGACGG 60.888 66.667 0.00 0.00 0.00 4.79
443 2137 2.885113 CGATGAGTGGCTGACGGA 59.115 61.111 0.00 0.00 0.00 4.69
444 2138 1.215382 CGATGAGTGGCTGACGGAA 59.785 57.895 0.00 0.00 0.00 4.30
445 2139 0.803768 CGATGAGTGGCTGACGGAAG 60.804 60.000 0.00 0.00 0.00 3.46
446 2140 1.078848 ATGAGTGGCTGACGGAAGC 60.079 57.895 3.17 3.17 42.75 3.86
459 2153 1.952635 GGAAGCCGTTCGTTCGTGT 60.953 57.895 0.00 0.00 32.92 4.49
460 2154 1.485943 GAAGCCGTTCGTTCGTGTC 59.514 57.895 0.00 0.00 0.00 3.67
463 2157 3.759828 CCGTTCGTTCGTGTCGGC 61.760 66.667 10.47 0.00 35.01 5.54
464 2158 3.759828 CGTTCGTTCGTGTCGGCC 61.760 66.667 0.00 0.00 0.00 6.13
465 2159 3.759828 GTTCGTTCGTGTCGGCCG 61.760 66.667 22.12 22.12 0.00 6.13
485 2179 2.611800 TGGCTGCATCCAGGACCT 60.612 61.111 4.84 0.00 39.54 3.85
486 2180 2.191641 GGCTGCATCCAGGACCTC 59.808 66.667 0.55 0.00 39.54 3.85
488 2182 2.673200 GCTGCATCCAGGACCTCCA 61.673 63.158 0.00 0.00 39.54 3.86
489 2183 1.222936 CTGCATCCAGGACCTCCAC 59.777 63.158 0.00 0.00 38.89 4.02
490 2184 2.262774 CTGCATCCAGGACCTCCACC 62.263 65.000 0.00 0.00 38.89 4.61
492 2186 1.977293 GCATCCAGGACCTCCACCTC 61.977 65.000 0.00 0.00 38.89 3.85
493 2187 1.003573 ATCCAGGACCTCCACCTCC 59.996 63.158 0.00 0.00 38.89 4.30
494 2188 1.826384 ATCCAGGACCTCCACCTCCA 61.826 60.000 0.00 0.00 38.89 3.86
495 2189 2.294078 CCAGGACCTCCACCTCCAC 61.294 68.421 0.00 0.00 38.89 4.02
496 2190 2.122954 AGGACCTCCACCTCCACC 59.877 66.667 0.00 0.00 38.89 4.61
498 2192 1.990614 GGACCTCCACCTCCACCTC 60.991 68.421 0.00 0.00 35.64 3.85
499 2193 2.283966 ACCTCCACCTCCACCTCG 60.284 66.667 0.00 0.00 0.00 4.63
500 2194 2.283966 CCTCCACCTCCACCTCGT 60.284 66.667 0.00 0.00 0.00 4.18
501 2195 2.352032 CCTCCACCTCCACCTCGTC 61.352 68.421 0.00 0.00 0.00 4.20
502 2196 1.606601 CTCCACCTCCACCTCGTCA 60.607 63.158 0.00 0.00 0.00 4.35
503 2197 1.152419 TCCACCTCCACCTCGTCAA 60.152 57.895 0.00 0.00 0.00 3.18
504 2198 1.185618 TCCACCTCCACCTCGTCAAG 61.186 60.000 0.00 0.00 0.00 3.02
505 2199 1.472662 CCACCTCCACCTCGTCAAGT 61.473 60.000 0.00 0.00 0.00 3.16
506 2200 0.319900 CACCTCCACCTCGTCAAGTG 60.320 60.000 0.00 0.00 0.00 3.16
510 2204 3.396951 CCACCTCGTCAAGTGGTTT 57.603 52.632 0.94 0.00 46.99 3.27
511 2205 1.226746 CCACCTCGTCAAGTGGTTTC 58.773 55.000 0.94 0.00 46.99 2.78
512 2206 1.226746 CACCTCGTCAAGTGGTTTCC 58.773 55.000 0.00 0.00 43.65 3.13
514 2208 0.249741 CCTCGTCAAGTGGTTTCCGT 60.250 55.000 0.00 0.00 0.00 4.69
515 2209 1.137513 CTCGTCAAGTGGTTTCCGTC 58.862 55.000 0.00 0.00 0.00 4.79
517 2211 1.226030 CGTCAAGTGGTTTCCGTCCC 61.226 60.000 0.00 0.00 0.00 4.46
518 2212 1.070105 TCAAGTGGTTTCCGTCCCG 59.930 57.895 0.00 0.00 0.00 5.14
520 2214 1.227734 AAGTGGTTTCCGTCCCGTG 60.228 57.895 0.00 0.00 0.00 4.94
522 2216 1.524393 GTGGTTTCCGTCCCGTGTT 60.524 57.895 0.00 0.00 0.00 3.32
523 2217 1.096967 GTGGTTTCCGTCCCGTGTTT 61.097 55.000 0.00 0.00 0.00 2.83
526 2642 1.465777 GGTTTCCGTCCCGTGTTTATG 59.534 52.381 0.00 0.00 0.00 1.90
531 2647 1.636988 CGTCCCGTGTTTATGTCTCC 58.363 55.000 0.00 0.00 0.00 3.71
533 2649 2.353406 CGTCCCGTGTTTATGTCTCCTT 60.353 50.000 0.00 0.00 0.00 3.36
534 2650 3.259902 GTCCCGTGTTTATGTCTCCTTC 58.740 50.000 0.00 0.00 0.00 3.46
538 2654 3.179830 CGTGTTTATGTCTCCTTCCGAG 58.820 50.000 0.00 0.00 40.30 4.63
541 2657 3.056107 TGTTTATGTCTCCTTCCGAGGTG 60.056 47.826 0.00 0.00 43.97 4.00
542 2658 2.820728 TATGTCTCCTTCCGAGGTGA 57.179 50.000 0.00 0.00 43.97 4.02
543 2659 2.166907 ATGTCTCCTTCCGAGGTGAT 57.833 50.000 1.11 0.00 44.79 3.06
544 2660 1.475403 TGTCTCCTTCCGAGGTGATC 58.525 55.000 1.11 0.00 44.79 2.92
545 2661 0.747852 GTCTCCTTCCGAGGTGATCC 59.252 60.000 1.11 0.00 44.79 3.36
547 2663 0.752009 CTCCTTCCGAGGTGATCCGA 60.752 60.000 0.00 0.00 43.97 4.55
548 2664 1.035932 TCCTTCCGAGGTGATCCGAC 61.036 60.000 0.00 0.00 43.97 4.79
550 2666 1.374343 CTTCCGAGGTGATCCGACGA 61.374 60.000 0.00 0.00 39.27 4.20
554 2670 0.040870 CGAGGTGATCCGACGAGATG 60.041 60.000 0.00 0.00 39.27 2.90
555 2671 0.312416 GAGGTGATCCGACGAGATGG 59.688 60.000 0.00 0.00 39.05 3.51
558 2674 0.312416 GTGATCCGACGAGATGGAGG 59.688 60.000 0.00 0.00 37.76 4.30
571 2687 3.819245 TGGAGGTCCACTGGTTTTG 57.181 52.632 0.00 0.00 42.01 2.44
572 2688 0.923358 TGGAGGTCCACTGGTTTTGT 59.077 50.000 0.00 0.00 42.01 2.83
573 2689 1.133915 TGGAGGTCCACTGGTTTTGTC 60.134 52.381 0.00 0.00 42.01 3.18
574 2690 1.143073 GGAGGTCCACTGGTTTTGTCT 59.857 52.381 0.00 0.00 35.64 3.41
577 2693 1.676006 GGTCCACTGGTTTTGTCTGTG 59.324 52.381 0.00 0.00 35.00 3.66
578 2694 2.639065 GTCCACTGGTTTTGTCTGTGA 58.361 47.619 0.00 0.00 36.57 3.58
580 2696 1.676006 CCACTGGTTTTGTCTGTGACC 59.324 52.381 0.00 0.00 36.57 4.02
581 2697 1.676006 CACTGGTTTTGTCTGTGACCC 59.324 52.381 0.00 0.00 36.57 4.46
582 2698 0.944386 CTGGTTTTGTCTGTGACCCG 59.056 55.000 0.00 0.00 0.00 5.28
583 2699 1.098712 TGGTTTTGTCTGTGACCCGC 61.099 55.000 0.00 0.00 0.00 6.13
585 2701 0.736053 GTTTTGTCTGTGACCCGCAA 59.264 50.000 0.00 0.00 0.00 4.85
586 2702 1.133407 GTTTTGTCTGTGACCCGCAAA 59.867 47.619 0.00 0.00 0.00 3.68
587 2703 0.736053 TTTGTCTGTGACCCGCAAAC 59.264 50.000 0.00 0.00 0.00 2.93
588 2704 1.098712 TTGTCTGTGACCCGCAAACC 61.099 55.000 0.00 0.00 0.00 3.27
590 2706 1.227823 TCTGTGACCCGCAAACCTG 60.228 57.895 0.00 0.00 0.00 4.00
591 2707 2.904866 TGTGACCCGCAAACCTGC 60.905 61.111 0.00 0.00 45.75 4.85
592 2708 3.670377 GTGACCCGCAAACCTGCC 61.670 66.667 0.00 0.00 46.56 4.85
594 2710 3.670377 GACCCGCAAACCTGCCAC 61.670 66.667 0.00 0.00 46.56 5.01
600 2716 3.365265 CAAACCTGCCACGGCCTC 61.365 66.667 5.42 0.00 41.09 4.70
612 2728 4.803426 GGCCTCGCTCCACAGACG 62.803 72.222 0.00 0.00 0.00 4.18
615 2731 1.444553 CCTCGCTCCACAGACGTTC 60.445 63.158 0.00 0.00 0.00 3.95
618 2734 3.112709 GCTCCACAGACGTTCGCC 61.113 66.667 0.00 0.00 0.00 5.54
619 2735 2.805353 CTCCACAGACGTTCGCCG 60.805 66.667 0.00 0.00 44.03 6.46
621 2737 4.657824 CCACAGACGTTCGCCGGT 62.658 66.667 1.90 0.00 42.24 5.28
622 2738 2.660552 CACAGACGTTCGCCGGTT 60.661 61.111 1.90 0.00 42.24 4.44
624 2740 1.080974 ACAGACGTTCGCCGGTTAG 60.081 57.895 1.90 0.00 42.24 2.34
625 2741 1.804326 CAGACGTTCGCCGGTTAGG 60.804 63.158 1.90 0.00 42.24 2.69
626 2742 2.259511 GACGTTCGCCGGTTAGGT 59.740 61.111 1.90 0.06 43.70 3.08
628 2744 0.798389 GACGTTCGCCGGTTAGGTAC 60.798 60.000 1.90 0.00 43.70 3.34
637 2753 1.446618 GGTTAGGTACCACACGCGG 60.447 63.158 15.94 1.27 46.92 6.46
638 2754 2.096442 GTTAGGTACCACACGCGGC 61.096 63.158 15.94 0.00 0.00 6.53
639 2755 3.299524 TTAGGTACCACACGCGGCC 62.300 63.158 15.94 0.00 0.00 6.13
674 2790 4.415332 CCGCGTGCACGTACTCCT 62.415 66.667 36.80 0.00 42.22 3.69
676 2792 2.434134 CGCGTGCACGTACTCCTTC 61.434 63.158 36.80 18.53 42.22 3.46
677 2793 2.092882 GCGTGCACGTACTCCTTCC 61.093 63.158 36.80 15.74 42.22 3.46
678 2794 1.585006 CGTGCACGTACTCCTTCCT 59.415 57.895 30.50 0.00 34.11 3.36
679 2795 0.038526 CGTGCACGTACTCCTTCCTT 60.039 55.000 30.50 0.00 34.11 3.36
681 2797 2.490991 GTGCACGTACTCCTTCCTTTT 58.509 47.619 0.00 0.00 0.00 2.27
713 3300 6.317140 TCTGCATATCAGATTTGGTCAAAGTC 59.683 38.462 3.34 1.51 46.34 3.01
727 3314 8.463930 TTGGTCAAAGTCAAATCTGATTAACT 57.536 30.769 2.85 7.76 33.05 2.24
728 3315 8.463930 TGGTCAAAGTCAAATCTGATTAACTT 57.536 30.769 18.21 18.21 33.05 2.66
729 3316 8.912988 TGGTCAAAGTCAAATCTGATTAACTTT 58.087 29.630 24.03 24.03 38.15 2.66
730 3317 9.185192 GGTCAAAGTCAAATCTGATTAACTTTG 57.815 33.333 33.75 33.75 45.57 2.77
834 3708 9.681062 ACCATATAGCTTTAGTGTTTTACATGT 57.319 29.630 2.69 2.69 0.00 3.21
901 3775 9.853177 ATATGTAGACTAAAAAGAAATGGAGGG 57.147 33.333 0.00 0.00 0.00 4.30
902 3776 7.324388 TGTAGACTAAAAAGAAATGGAGGGA 57.676 36.000 0.00 0.00 0.00 4.20
903 3777 7.394816 TGTAGACTAAAAAGAAATGGAGGGAG 58.605 38.462 0.00 0.00 0.00 4.30
904 3778 6.455690 AGACTAAAAAGAAATGGAGGGAGT 57.544 37.500 0.00 0.00 0.00 3.85
905 3779 7.569599 AGACTAAAAAGAAATGGAGGGAGTA 57.430 36.000 0.00 0.00 0.00 2.59
906 3780 7.395617 AGACTAAAAAGAAATGGAGGGAGTAC 58.604 38.462 0.00 0.00 0.00 2.73
907 3781 7.017254 AGACTAAAAAGAAATGGAGGGAGTACA 59.983 37.037 0.00 0.00 0.00 2.90
908 3782 7.523415 ACTAAAAAGAAATGGAGGGAGTACAA 58.477 34.615 0.00 0.00 0.00 2.41
909 3783 8.002459 ACTAAAAAGAAATGGAGGGAGTACAAA 58.998 33.333 0.00 0.00 0.00 2.83
910 3784 7.855784 AAAAAGAAATGGAGGGAGTACAAAT 57.144 32.000 0.00 0.00 0.00 2.32
911 3785 8.950007 AAAAAGAAATGGAGGGAGTACAAATA 57.050 30.769 0.00 0.00 0.00 1.40
912 3786 9.547279 AAAAAGAAATGGAGGGAGTACAAATAT 57.453 29.630 0.00 0.00 0.00 1.28
913 3787 8.753497 AAAGAAATGGAGGGAGTACAAATATC 57.247 34.615 0.00 0.00 0.00 1.63
914 3788 6.842676 AGAAATGGAGGGAGTACAAATATCC 58.157 40.000 0.00 0.00 0.00 2.59
920 3794 2.132762 GGAGTACAAATATCCCACGCG 58.867 52.381 3.53 3.53 0.00 6.01
921 3795 1.525619 GAGTACAAATATCCCACGCGC 59.474 52.381 5.73 0.00 0.00 6.86
922 3796 0.231279 GTACAAATATCCCACGCGCG 59.769 55.000 30.96 30.96 0.00 6.86
923 3797 0.876777 TACAAATATCCCACGCGCGG 60.877 55.000 35.22 22.11 0.00 6.46
924 3798 3.276846 AAATATCCCACGCGCGGC 61.277 61.111 35.22 0.00 0.00 6.53
947 3821 4.025401 CGGTGCAACTTGGGACGC 62.025 66.667 0.00 0.00 36.74 5.19
973 3847 1.867233 CAGCCCGAATTAACATCTCCG 59.133 52.381 0.00 0.00 0.00 4.63
974 3848 0.586802 GCCCGAATTAACATCTCCGC 59.413 55.000 0.00 0.00 0.00 5.54
985 3859 2.772691 ATCTCCGCCGTCGTCTTCC 61.773 63.158 0.00 0.00 0.00 3.46
997 3876 2.602267 TCTTCCCGTCGCCCAGAA 60.602 61.111 0.00 0.00 0.00 3.02
1003 3882 0.958382 CCCGTCGCCCAGAAAAATGA 60.958 55.000 0.00 0.00 0.00 2.57
1007 3886 2.151202 GTCGCCCAGAAAAATGACAGA 58.849 47.619 0.00 0.00 0.00 3.41
1012 3891 3.754965 CCCAGAAAAATGACAGACCAGA 58.245 45.455 0.00 0.00 0.00 3.86
1014 3893 4.136796 CCAGAAAAATGACAGACCAGACA 58.863 43.478 0.00 0.00 0.00 3.41
1015 3894 4.023707 CCAGAAAAATGACAGACCAGACAC 60.024 45.833 0.00 0.00 0.00 3.67
1016 3895 3.809832 AGAAAAATGACAGACCAGACACG 59.190 43.478 0.00 0.00 0.00 4.49
1017 3896 3.469008 AAAATGACAGACCAGACACGA 57.531 42.857 0.00 0.00 0.00 4.35
1018 3897 3.469008 AAATGACAGACCAGACACGAA 57.531 42.857 0.00 0.00 0.00 3.85
1019 3898 2.440539 ATGACAGACCAGACACGAAC 57.559 50.000 0.00 0.00 0.00 3.95
1020 3899 1.107945 TGACAGACCAGACACGAACA 58.892 50.000 0.00 0.00 0.00 3.18
1337 4252 4.373116 GGACCTGCGCGACTTCCA 62.373 66.667 12.10 0.00 0.00 3.53
1338 4253 3.112709 GACCTGCGCGACTTCCAC 61.113 66.667 12.10 0.00 0.00 4.02
1339 4254 4.681978 ACCTGCGCGACTTCCACC 62.682 66.667 12.10 0.00 0.00 4.61
1434 4463 3.007614 GTGTGCCCACCTACTTCTTCTTA 59.992 47.826 0.00 0.00 35.44 2.10
1437 4466 3.908103 TGCCCACCTACTTCTTCTTAACT 59.092 43.478 0.00 0.00 0.00 2.24
1495 4524 0.669077 GGTCATCGATGAGCGTACCT 59.331 55.000 34.15 0.00 44.12 3.08
1774 4833 1.078143 GGAGACCTCAAAGCGCCAT 60.078 57.895 2.29 0.00 0.00 4.40
1901 4960 0.178992 CCTGGAAACAAGTGGGCAGA 60.179 55.000 0.00 0.00 42.06 4.26
1909 4968 0.984230 CAAGTGGGCAGAGGTTCCTA 59.016 55.000 0.00 0.00 0.00 2.94
1918 4977 1.831736 CAGAGGTTCCTATGGGTCGTT 59.168 52.381 5.66 0.00 0.00 3.85
2059 5118 1.306141 ATGGGACTCTCCTTGGCGA 60.306 57.895 0.00 0.00 36.57 5.54
2117 5177 2.215196 TCTTTGTAACCGACCTTGTGC 58.785 47.619 0.00 0.00 0.00 4.57
2123 5183 2.983592 CCGACCTTGTGCAACCCC 60.984 66.667 0.00 0.00 34.36 4.95
2125 5185 1.603455 CGACCTTGTGCAACCCCAT 60.603 57.895 0.00 0.00 34.36 4.00
2133 5193 0.550914 GTGCAACCCCATATCCTCCA 59.449 55.000 0.00 0.00 0.00 3.86
2183 5248 4.111375 CGGAGGGGAGATATTCATTACG 57.889 50.000 0.00 0.00 0.00 3.18
2184 5249 3.510360 CGGAGGGGAGATATTCATTACGT 59.490 47.826 0.00 0.00 0.00 3.57
2279 5344 9.127277 TCATATTCATCAAGATCAATCAAGCAA 57.873 29.630 0.00 0.00 0.00 3.91
2336 5401 0.037139 TGGGTAAACATCGTGTCCCG 60.037 55.000 0.00 0.00 37.88 5.14
2446 5511 0.249911 GAGAGTTCCACTGTGCCGTT 60.250 55.000 1.29 0.00 0.00 4.44
2533 5598 1.630148 CGGACAGATCTTCGTGTTCC 58.370 55.000 0.00 0.00 0.00 3.62
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
80 81 7.997107 ACTACATGAGCATTTTTAATGCATG 57.003 32.000 22.14 19.10 46.77 4.06
94 95 6.072175 CCTCCAGTATTCTCTACTACATGAGC 60.072 46.154 0.00 0.00 0.00 4.26
95 96 6.432783 CCCTCCAGTATTCTCTACTACATGAG 59.567 46.154 0.00 0.00 0.00 2.90
96 97 6.102762 TCCCTCCAGTATTCTCTACTACATGA 59.897 42.308 0.00 0.00 0.00 3.07
97 98 6.307776 TCCCTCCAGTATTCTCTACTACATG 58.692 44.000 0.00 0.00 0.00 3.21
98 99 6.532119 TCCCTCCAGTATTCTCTACTACAT 57.468 41.667 0.00 0.00 0.00 2.29
99 100 5.988865 TCCCTCCAGTATTCTCTACTACA 57.011 43.478 0.00 0.00 0.00 2.74
100 101 6.603224 TCTTCCCTCCAGTATTCTCTACTAC 58.397 44.000 0.00 0.00 0.00 2.73
101 102 6.843473 TCTTCCCTCCAGTATTCTCTACTA 57.157 41.667 0.00 0.00 0.00 1.82
102 103 5.735733 TCTTCCCTCCAGTATTCTCTACT 57.264 43.478 0.00 0.00 0.00 2.57
103 104 6.130569 TCTTCTTCCCTCCAGTATTCTCTAC 58.869 44.000 0.00 0.00 0.00 2.59
104 105 6.342819 TCTTCTTCCCTCCAGTATTCTCTA 57.657 41.667 0.00 0.00 0.00 2.43
105 106 5.213868 TCTTCTTCCCTCCAGTATTCTCT 57.786 43.478 0.00 0.00 0.00 3.10
108 109 5.941555 TCTTCTTCTTCCCTCCAGTATTC 57.058 43.478 0.00 0.00 0.00 1.75
109 110 6.477253 GTTTCTTCTTCTTCCCTCCAGTATT 58.523 40.000 0.00 0.00 0.00 1.89
110 111 5.045505 GGTTTCTTCTTCTTCCCTCCAGTAT 60.046 44.000 0.00 0.00 0.00 2.12
111 112 4.286291 GGTTTCTTCTTCTTCCCTCCAGTA 59.714 45.833 0.00 0.00 0.00 2.74
112 113 3.073209 GGTTTCTTCTTCTTCCCTCCAGT 59.927 47.826 0.00 0.00 0.00 4.00
113 114 3.560239 GGGTTTCTTCTTCTTCCCTCCAG 60.560 52.174 0.00 0.00 32.89 3.86
114 115 2.375509 GGGTTTCTTCTTCTTCCCTCCA 59.624 50.000 0.00 0.00 32.89 3.86
115 116 2.615747 CGGGTTTCTTCTTCTTCCCTCC 60.616 54.545 0.00 0.00 33.41 4.30
116 117 2.302157 TCGGGTTTCTTCTTCTTCCCTC 59.698 50.000 0.00 0.00 33.41 4.30
117 118 2.303311 CTCGGGTTTCTTCTTCTTCCCT 59.697 50.000 0.00 0.00 33.41 4.20
118 119 2.302157 TCTCGGGTTTCTTCTTCTTCCC 59.698 50.000 0.00 0.00 0.00 3.97
119 120 3.679824 TCTCGGGTTTCTTCTTCTTCC 57.320 47.619 0.00 0.00 0.00 3.46
120 121 6.373186 TTTTTCTCGGGTTTCTTCTTCTTC 57.627 37.500 0.00 0.00 0.00 2.87
166 167 8.468399 TGTACCGGTTTTCATTAACTTTTCTTT 58.532 29.630 15.04 0.00 0.00 2.52
169 170 7.194962 TGTGTACCGGTTTTCATTAACTTTTC 58.805 34.615 15.04 0.00 0.00 2.29
173 174 6.543100 TCTTTGTGTACCGGTTTTCATTAACT 59.457 34.615 15.04 0.00 0.00 2.24
174 175 6.727215 TCTTTGTGTACCGGTTTTCATTAAC 58.273 36.000 15.04 1.86 0.00 2.01
175 176 6.939132 TCTTTGTGTACCGGTTTTCATTAA 57.061 33.333 15.04 7.41 0.00 1.40
179 180 5.640189 TTTTCTTTGTGTACCGGTTTTCA 57.360 34.783 15.04 7.63 0.00 2.69
253 1711 9.533831 GTATTCCCATATATTTGGACCTTGATT 57.466 33.333 13.30 2.20 39.25 2.57
254 1712 8.677871 TGTATTCCCATATATTTGGACCTTGAT 58.322 33.333 13.30 1.99 39.25 2.57
255 1713 8.051468 TGTATTCCCATATATTTGGACCTTGA 57.949 34.615 13.30 0.00 39.25 3.02
256 1714 8.704849 TTGTATTCCCATATATTTGGACCTTG 57.295 34.615 13.30 0.00 39.25 3.61
257 1715 9.897040 AATTGTATTCCCATATATTTGGACCTT 57.103 29.630 13.30 0.00 39.25 3.50
258 1716 9.897040 AAATTGTATTCCCATATATTTGGACCT 57.103 29.630 13.30 0.86 39.25 3.85
278 1736 9.699410 TTCCTCAATCCAACTGATATAAATTGT 57.301 29.630 0.00 0.00 31.83 2.71
279 1737 9.956720 GTTCCTCAATCCAACTGATATAAATTG 57.043 33.333 0.00 0.00 31.83 2.32
280 1738 9.136323 GGTTCCTCAATCCAACTGATATAAATT 57.864 33.333 0.00 0.00 31.83 1.82
281 1739 7.445402 CGGTTCCTCAATCCAACTGATATAAAT 59.555 37.037 0.00 0.00 31.83 1.40
282 1740 6.765989 CGGTTCCTCAATCCAACTGATATAAA 59.234 38.462 0.00 0.00 31.83 1.40
283 1741 6.288294 CGGTTCCTCAATCCAACTGATATAA 58.712 40.000 0.00 0.00 31.83 0.98
284 1742 5.221641 CCGGTTCCTCAATCCAACTGATATA 60.222 44.000 0.00 0.00 31.83 0.86
285 1743 4.444876 CCGGTTCCTCAATCCAACTGATAT 60.445 45.833 0.00 0.00 31.83 1.63
286 1744 3.118408 CCGGTTCCTCAATCCAACTGATA 60.118 47.826 0.00 0.00 31.83 2.15
287 1745 2.356125 CCGGTTCCTCAATCCAACTGAT 60.356 50.000 0.00 0.00 34.22 2.90
288 1746 1.003118 CCGGTTCCTCAATCCAACTGA 59.997 52.381 0.00 0.00 0.00 3.41
289 1747 1.271379 ACCGGTTCCTCAATCCAACTG 60.271 52.381 0.00 0.00 0.00 3.16
290 1748 1.064825 ACCGGTTCCTCAATCCAACT 58.935 50.000 0.00 0.00 0.00 3.16
291 1749 2.773993 TACCGGTTCCTCAATCCAAC 57.226 50.000 15.04 0.00 0.00 3.77
292 1750 3.791953 TTTACCGGTTCCTCAATCCAA 57.208 42.857 15.04 0.00 0.00 3.53
293 1751 3.181442 TGTTTTACCGGTTCCTCAATCCA 60.181 43.478 15.04 0.00 0.00 3.41
294 1752 3.414269 TGTTTTACCGGTTCCTCAATCC 58.586 45.455 15.04 0.00 0.00 3.01
295 1753 3.119955 GCTGTTTTACCGGTTCCTCAATC 60.120 47.826 15.04 0.00 0.00 2.67
296 1754 2.817844 GCTGTTTTACCGGTTCCTCAAT 59.182 45.455 15.04 0.00 0.00 2.57
297 1755 2.223745 GCTGTTTTACCGGTTCCTCAA 58.776 47.619 15.04 0.00 0.00 3.02
298 1756 1.543871 GGCTGTTTTACCGGTTCCTCA 60.544 52.381 15.04 7.23 0.00 3.86
299 1757 1.162698 GGCTGTTTTACCGGTTCCTC 58.837 55.000 15.04 2.19 0.00 3.71
300 1758 0.475044 TGGCTGTTTTACCGGTTCCT 59.525 50.000 15.04 0.00 0.00 3.36
301 1759 0.594602 GTGGCTGTTTTACCGGTTCC 59.405 55.000 15.04 3.70 0.00 3.62
302 1760 1.310904 TGTGGCTGTTTTACCGGTTC 58.689 50.000 15.04 1.79 0.00 3.62
318 1776 2.648724 GAATGGCGCGCGATTGTG 60.649 61.111 39.63 2.99 0.00 3.33
322 1780 3.790334 TAGCTGAATGGCGCGCGAT 62.790 57.895 37.18 25.10 37.29 4.58
337 1795 1.821258 CCGGTCCAAGTAGGGTAGC 59.179 63.158 0.00 0.00 38.24 3.58
338 1796 1.683418 GGCCGGTCCAAGTAGGGTAG 61.683 65.000 1.90 0.00 38.24 3.18
339 1797 1.686800 GGCCGGTCCAAGTAGGGTA 60.687 63.158 1.90 0.00 38.24 3.69
341 1799 2.687566 AGGCCGGTCCAAGTAGGG 60.688 66.667 15.92 0.00 38.24 3.53
342 1800 1.338136 ATGAGGCCGGTCCAAGTAGG 61.338 60.000 15.92 0.00 37.29 3.18
343 1801 0.179073 CATGAGGCCGGTCCAAGTAG 60.179 60.000 15.92 0.00 37.29 2.57
344 1802 1.904771 CATGAGGCCGGTCCAAGTA 59.095 57.895 15.92 1.52 37.29 2.24
363 2057 1.875963 CTAAAACACGCAGGGCCTG 59.124 57.895 29.44 29.44 34.12 4.85
365 2059 2.566529 GCTAAAACACGCAGGGCC 59.433 61.111 0.00 0.00 0.00 5.80
367 2061 1.169661 TGTGGCTAAAACACGCAGGG 61.170 55.000 0.00 0.00 41.64 4.45
368 2062 0.238289 CTGTGGCTAAAACACGCAGG 59.762 55.000 0.00 0.00 41.64 4.85
370 2064 1.332375 GAACTGTGGCTAAAACACGCA 59.668 47.619 0.00 0.00 41.64 5.24
371 2065 1.332375 TGAACTGTGGCTAAAACACGC 59.668 47.619 0.00 0.00 41.64 5.34
372 2066 3.664276 CGATGAACTGTGGCTAAAACACG 60.664 47.826 0.00 0.00 41.64 4.49
373 2067 3.810373 CGATGAACTGTGGCTAAAACAC 58.190 45.455 0.00 0.00 39.26 3.32
374 2068 2.225491 GCGATGAACTGTGGCTAAAACA 59.775 45.455 0.00 0.00 0.00 2.83
375 2069 2.225491 TGCGATGAACTGTGGCTAAAAC 59.775 45.455 0.00 0.00 0.00 2.43
376 2070 2.483877 CTGCGATGAACTGTGGCTAAAA 59.516 45.455 0.00 0.00 0.00 1.52
379 2073 0.608130 ACTGCGATGAACTGTGGCTA 59.392 50.000 0.00 0.00 0.00 3.93
380 2074 0.952497 CACTGCGATGAACTGTGGCT 60.952 55.000 0.00 0.00 34.44 4.75
381 2075 1.499056 CACTGCGATGAACTGTGGC 59.501 57.895 0.00 0.00 34.44 5.01
382 2076 2.165380 CCACTGCGATGAACTGTGG 58.835 57.895 5.58 5.58 46.38 4.17
383 2077 1.915614 GCCCACTGCGATGAACTGTG 61.916 60.000 0.00 0.00 36.90 3.66
384 2078 1.672356 GCCCACTGCGATGAACTGT 60.672 57.895 0.00 0.00 0.00 3.55
385 2079 1.236616 TTGCCCACTGCGATGAACTG 61.237 55.000 0.00 0.00 45.60 3.16
386 2080 0.537143 TTTGCCCACTGCGATGAACT 60.537 50.000 0.00 0.00 45.60 3.01
387 2081 0.109597 CTTTGCCCACTGCGATGAAC 60.110 55.000 0.00 0.00 45.60 3.18
389 2083 0.250684 TTCTTTGCCCACTGCGATGA 60.251 50.000 0.00 0.00 45.60 2.92
393 2087 1.213537 CCATTCTTTGCCCACTGCG 59.786 57.895 0.00 0.00 45.60 5.18
394 2088 0.899717 TCCCATTCTTTGCCCACTGC 60.900 55.000 0.00 0.00 41.77 4.40
395 2089 1.631405 TTCCCATTCTTTGCCCACTG 58.369 50.000 0.00 0.00 0.00 3.66
396 2090 2.158325 TCTTTCCCATTCTTTGCCCACT 60.158 45.455 0.00 0.00 0.00 4.00
397 2091 2.232208 CTCTTTCCCATTCTTTGCCCAC 59.768 50.000 0.00 0.00 0.00 4.61
398 2092 2.528564 CTCTTTCCCATTCTTTGCCCA 58.471 47.619 0.00 0.00 0.00 5.36
399 2093 1.827344 CCTCTTTCCCATTCTTTGCCC 59.173 52.381 0.00 0.00 0.00 5.36
400 2094 1.205655 GCCTCTTTCCCATTCTTTGCC 59.794 52.381 0.00 0.00 0.00 4.52
401 2095 1.135286 CGCCTCTTTCCCATTCTTTGC 60.135 52.381 0.00 0.00 0.00 3.68
402 2096 2.436417 TCGCCTCTTTCCCATTCTTTG 58.564 47.619 0.00 0.00 0.00 2.77
403 2097 2.879103 TCGCCTCTTTCCCATTCTTT 57.121 45.000 0.00 0.00 0.00 2.52
406 2100 1.312815 CCATCGCCTCTTTCCCATTC 58.687 55.000 0.00 0.00 0.00 2.67
407 2101 0.753111 GCCATCGCCTCTTTCCCATT 60.753 55.000 0.00 0.00 0.00 3.16
408 2102 1.152881 GCCATCGCCTCTTTCCCAT 60.153 57.895 0.00 0.00 0.00 4.00
409 2103 2.272146 GCCATCGCCTCTTTCCCA 59.728 61.111 0.00 0.00 0.00 4.37
410 2104 2.666596 ATCGCCATCGCCTCTTTCCC 62.667 60.000 0.00 0.00 35.26 3.97
411 2105 1.227674 ATCGCCATCGCCTCTTTCC 60.228 57.895 0.00 0.00 35.26 3.13
412 2106 0.530650 TCATCGCCATCGCCTCTTTC 60.531 55.000 0.00 0.00 35.26 2.62
413 2107 0.531532 CTCATCGCCATCGCCTCTTT 60.532 55.000 0.00 0.00 35.26 2.52
414 2108 1.068753 CTCATCGCCATCGCCTCTT 59.931 57.895 0.00 0.00 35.26 2.85
415 2109 2.130426 ACTCATCGCCATCGCCTCT 61.130 57.895 0.00 0.00 35.26 3.69
416 2110 1.953138 CACTCATCGCCATCGCCTC 60.953 63.158 0.00 0.00 35.26 4.70
417 2111 2.107750 CACTCATCGCCATCGCCT 59.892 61.111 0.00 0.00 35.26 5.52
418 2112 2.969238 CCACTCATCGCCATCGCC 60.969 66.667 0.00 0.00 35.26 5.54
419 2113 3.643978 GCCACTCATCGCCATCGC 61.644 66.667 0.00 0.00 35.26 4.58
420 2114 2.107750 AGCCACTCATCGCCATCG 59.892 61.111 0.00 0.00 0.00 3.84
421 2115 1.144716 TCAGCCACTCATCGCCATC 59.855 57.895 0.00 0.00 0.00 3.51
422 2116 1.153289 GTCAGCCACTCATCGCCAT 60.153 57.895 0.00 0.00 0.00 4.40
423 2117 2.265739 GTCAGCCACTCATCGCCA 59.734 61.111 0.00 0.00 0.00 5.69
424 2118 2.887568 CGTCAGCCACTCATCGCC 60.888 66.667 0.00 0.00 0.00 5.54
426 2120 0.803768 CTTCCGTCAGCCACTCATCG 60.804 60.000 0.00 0.00 0.00 3.84
427 2121 1.086634 GCTTCCGTCAGCCACTCATC 61.087 60.000 0.00 0.00 33.21 2.92
429 2123 2.343758 GCTTCCGTCAGCCACTCA 59.656 61.111 0.00 0.00 33.21 3.41
441 2135 1.883725 GACACGAACGAACGGCTTCC 61.884 60.000 0.14 0.00 37.61 3.46
442 2136 1.485943 GACACGAACGAACGGCTTC 59.514 57.895 0.14 0.00 37.61 3.86
443 2137 2.297912 CGACACGAACGAACGGCTT 61.298 57.895 0.14 0.00 37.61 4.35
444 2138 2.728383 CGACACGAACGAACGGCT 60.728 61.111 0.14 0.00 37.61 5.52
445 2139 3.759828 CCGACACGAACGAACGGC 61.760 66.667 14.21 0.69 37.32 5.68
446 2140 3.759828 GCCGACACGAACGAACGG 61.760 66.667 18.75 18.75 45.26 4.44
447 2141 3.759828 GGCCGACACGAACGAACG 61.760 66.667 0.14 0.00 39.31 3.95
448 2142 3.759828 CGGCCGACACGAACGAAC 61.760 66.667 24.07 0.00 0.00 3.95
470 2164 2.191641 GGAGGTCCTGGATGCAGC 59.808 66.667 9.03 0.00 0.00 5.25
472 2166 2.300967 GGTGGAGGTCCTGGATGCA 61.301 63.158 0.00 0.00 36.82 3.96
474 2168 1.341156 GGAGGTGGAGGTCCTGGATG 61.341 65.000 0.00 0.00 35.20 3.51
475 2169 1.003573 GGAGGTGGAGGTCCTGGAT 59.996 63.158 0.00 0.00 35.20 3.41
476 2170 2.450243 GGAGGTGGAGGTCCTGGA 59.550 66.667 0.00 0.00 35.20 3.86
478 2172 2.294078 GGTGGAGGTGGAGGTCCTG 61.294 68.421 0.00 0.00 35.20 3.86
480 2174 1.990614 GAGGTGGAGGTGGAGGTCC 60.991 68.421 0.00 0.00 0.00 4.46
481 2175 2.352032 CGAGGTGGAGGTGGAGGTC 61.352 68.421 0.00 0.00 0.00 3.85
482 2176 2.283966 CGAGGTGGAGGTGGAGGT 60.284 66.667 0.00 0.00 0.00 3.85
483 2177 2.283966 ACGAGGTGGAGGTGGAGG 60.284 66.667 0.00 0.00 0.00 4.30
484 2178 1.185618 TTGACGAGGTGGAGGTGGAG 61.186 60.000 0.00 0.00 0.00 3.86
485 2179 1.152419 TTGACGAGGTGGAGGTGGA 60.152 57.895 0.00 0.00 0.00 4.02
486 2180 1.293498 CTTGACGAGGTGGAGGTGG 59.707 63.158 0.00 0.00 0.00 4.61
488 2182 2.050269 CACTTGACGAGGTGGAGGT 58.950 57.895 0.00 0.00 0.00 3.85
489 2183 4.996976 CACTTGACGAGGTGGAGG 57.003 61.111 0.00 0.00 0.00 4.30
493 2187 1.226746 GGAAACCACTTGACGAGGTG 58.773 55.000 0.00 0.00 36.65 4.00
494 2188 0.249741 CGGAAACCACTTGACGAGGT 60.250 55.000 0.00 0.00 38.31 3.85
495 2189 0.249741 ACGGAAACCACTTGACGAGG 60.250 55.000 0.00 0.00 0.00 4.63
496 2190 1.137513 GACGGAAACCACTTGACGAG 58.862 55.000 0.00 0.00 0.00 4.18
498 2192 1.226030 GGGACGGAAACCACTTGACG 61.226 60.000 0.00 0.00 0.00 4.35
499 2193 2.625375 GGGACGGAAACCACTTGAC 58.375 57.895 0.00 0.00 0.00 3.18
514 2208 2.235402 GGAAGGAGACATAAACACGGGA 59.765 50.000 0.00 0.00 0.00 5.14
515 2209 2.629051 GGAAGGAGACATAAACACGGG 58.371 52.381 0.00 0.00 0.00 5.28
517 2211 3.179830 CTCGGAAGGAGACATAAACACG 58.820 50.000 0.00 0.00 46.23 4.49
518 2212 3.056035 ACCTCGGAAGGAGACATAAACAC 60.056 47.826 0.00 0.00 46.67 3.32
520 2214 3.194968 TCACCTCGGAAGGAGACATAAAC 59.805 47.826 0.00 0.00 46.67 2.01
522 2216 3.095912 TCACCTCGGAAGGAGACATAA 57.904 47.619 0.00 0.00 46.67 1.90
523 2217 2.820728 TCACCTCGGAAGGAGACATA 57.179 50.000 0.00 0.00 46.67 2.29
526 2642 0.747852 GGATCACCTCGGAAGGAGAC 59.252 60.000 0.00 0.00 46.67 3.36
531 2647 1.064296 CGTCGGATCACCTCGGAAG 59.936 63.158 0.00 0.00 35.26 3.46
533 2649 1.818363 CTCGTCGGATCACCTCGGA 60.818 63.158 0.00 0.00 34.21 4.55
534 2650 1.167155 ATCTCGTCGGATCACCTCGG 61.167 60.000 0.00 0.00 34.21 4.63
538 2654 0.312416 CTCCATCTCGTCGGATCACC 59.688 60.000 0.00 0.00 0.00 4.02
541 2657 0.594110 GACCTCCATCTCGTCGGATC 59.406 60.000 0.00 0.00 0.00 3.36
542 2658 0.824182 GGACCTCCATCTCGTCGGAT 60.824 60.000 0.00 0.00 35.64 4.18
543 2659 1.453379 GGACCTCCATCTCGTCGGA 60.453 63.158 0.00 0.00 35.64 4.55
544 2660 1.753078 TGGACCTCCATCTCGTCGG 60.753 63.158 0.00 0.00 42.01 4.79
545 2661 3.920031 TGGACCTCCATCTCGTCG 58.080 61.111 0.00 0.00 42.01 5.12
554 2670 1.143073 AGACAAAACCAGTGGACCTCC 59.857 52.381 18.40 0.10 0.00 4.30
555 2671 2.222027 CAGACAAAACCAGTGGACCTC 58.778 52.381 18.40 2.71 0.00 3.85
558 2674 2.354821 GTCACAGACAAAACCAGTGGAC 59.645 50.000 18.40 0.00 32.09 4.02
563 2679 0.944386 CGGGTCACAGACAAAACCAG 59.056 55.000 0.00 0.00 33.68 4.00
564 2680 1.098712 GCGGGTCACAGACAAAACCA 61.099 55.000 0.00 0.00 33.68 3.67
565 2681 1.098712 TGCGGGTCACAGACAAAACC 61.099 55.000 0.00 0.00 33.68 3.27
566 2682 0.736053 TTGCGGGTCACAGACAAAAC 59.264 50.000 0.00 0.00 33.68 2.43
567 2683 1.133407 GTTTGCGGGTCACAGACAAAA 59.867 47.619 0.00 0.00 33.68 2.44
571 2687 1.227853 AGGTTTGCGGGTCACAGAC 60.228 57.895 0.00 0.00 0.00 3.51
572 2688 1.227823 CAGGTTTGCGGGTCACAGA 60.228 57.895 0.00 0.00 0.00 3.41
573 2689 2.908073 GCAGGTTTGCGGGTCACAG 61.908 63.158 0.00 0.00 41.13 3.66
574 2690 2.904866 GCAGGTTTGCGGGTCACA 60.905 61.111 0.00 0.00 41.13 3.58
583 2699 3.365265 GAGGCCGTGGCAGGTTTG 61.365 66.667 13.76 0.00 44.11 2.93
594 2710 4.803426 GTCTGTGGAGCGAGGCCG 62.803 72.222 0.00 0.00 39.16 6.13
595 2711 4.803426 CGTCTGTGGAGCGAGGCC 62.803 72.222 0.00 0.00 0.00 5.19
596 2712 3.575351 AACGTCTGTGGAGCGAGGC 62.575 63.158 0.00 0.00 0.00 4.70
597 2713 1.444553 GAACGTCTGTGGAGCGAGG 60.445 63.158 0.00 0.00 0.00 4.63
598 2714 1.797933 CGAACGTCTGTGGAGCGAG 60.798 63.158 0.00 0.00 0.00 5.03
599 2715 2.254350 CGAACGTCTGTGGAGCGA 59.746 61.111 0.00 0.00 0.00 4.93
600 2716 3.470567 GCGAACGTCTGTGGAGCG 61.471 66.667 0.00 0.00 0.00 5.03
601 2717 3.112709 GGCGAACGTCTGTGGAGC 61.113 66.667 0.00 0.00 0.00 4.70
602 2718 2.805353 CGGCGAACGTCTGTGGAG 60.805 66.667 0.00 0.00 37.93 3.86
603 2719 4.351938 CCGGCGAACGTCTGTGGA 62.352 66.667 9.30 0.00 42.24 4.02
604 2720 2.752322 TAACCGGCGAACGTCTGTGG 62.752 60.000 9.30 0.00 42.24 4.17
605 2721 1.342082 CTAACCGGCGAACGTCTGTG 61.342 60.000 9.30 0.00 42.24 3.66
607 2723 1.804326 CCTAACCGGCGAACGTCTG 60.804 63.158 9.30 0.00 42.24 3.51
609 2725 0.798389 GTACCTAACCGGCGAACGTC 60.798 60.000 9.30 0.00 42.24 4.34
612 2728 4.502263 GGTACCTAACCGGCGAAC 57.498 61.111 9.30 0.00 38.88 3.95
621 2737 2.262292 GCCGCGTGTGGTACCTAA 59.738 61.111 14.36 0.00 0.00 2.69
622 2738 3.762247 GGCCGCGTGTGGTACCTA 61.762 66.667 14.36 0.00 0.00 3.08
657 2773 3.909258 AAGGAGTACGTGCACGCGG 62.909 63.158 37.35 14.02 44.43 6.46
661 2777 2.165319 AAAGGAAGGAGTACGTGCAC 57.835 50.000 6.82 6.82 0.00 4.57
689 2805 6.094464 TGACTTTGACCAAATCTGATATGCAG 59.906 38.462 0.00 0.00 46.31 4.41
690 2806 5.945191 TGACTTTGACCAAATCTGATATGCA 59.055 36.000 0.00 0.00 0.00 3.96
691 2807 6.441093 TGACTTTGACCAAATCTGATATGC 57.559 37.500 0.00 0.00 0.00 3.14
700 2816 9.696917 GTTAATCAGATTTGACTTTGACCAAAT 57.303 29.630 0.00 0.00 43.33 2.32
701 2817 8.912988 AGTTAATCAGATTTGACTTTGACCAAA 58.087 29.630 0.00 0.00 35.83 3.28
702 2818 8.463930 AGTTAATCAGATTTGACTTTGACCAA 57.536 30.769 0.00 0.00 35.83 3.67
703 2819 8.463930 AAGTTAATCAGATTTGACTTTGACCA 57.536 30.769 14.43 0.00 35.83 4.02
704 2820 9.185192 CAAAGTTAATCAGATTTGACTTTGACC 57.815 33.333 32.30 3.20 45.56 4.02
705 2821 9.950680 TCAAAGTTAATCAGATTTGACTTTGAC 57.049 29.630 33.14 11.38 45.82 3.18
808 3682 9.681062 ACATGTAAAACACTAAAGCTATATGGT 57.319 29.630 0.00 0.00 0.00 3.55
875 3749 9.853177 CCCTCCATTTCTTTTTAGTCTACATAT 57.147 33.333 0.00 0.00 0.00 1.78
876 3750 9.053472 TCCCTCCATTTCTTTTTAGTCTACATA 57.947 33.333 0.00 0.00 0.00 2.29
877 3751 7.928873 TCCCTCCATTTCTTTTTAGTCTACAT 58.071 34.615 0.00 0.00 0.00 2.29
878 3752 7.017254 ACTCCCTCCATTTCTTTTTAGTCTACA 59.983 37.037 0.00 0.00 0.00 2.74
879 3753 7.395617 ACTCCCTCCATTTCTTTTTAGTCTAC 58.604 38.462 0.00 0.00 0.00 2.59
880 3754 7.569599 ACTCCCTCCATTTCTTTTTAGTCTA 57.430 36.000 0.00 0.00 0.00 2.59
881 3755 6.455690 ACTCCCTCCATTTCTTTTTAGTCT 57.544 37.500 0.00 0.00 0.00 3.24
882 3756 7.166167 TGTACTCCCTCCATTTCTTTTTAGTC 58.834 38.462 0.00 0.00 0.00 2.59
883 3757 7.086685 TGTACTCCCTCCATTTCTTTTTAGT 57.913 36.000 0.00 0.00 0.00 2.24
884 3758 7.996098 TTGTACTCCCTCCATTTCTTTTTAG 57.004 36.000 0.00 0.00 0.00 1.85
885 3759 8.950007 ATTTGTACTCCCTCCATTTCTTTTTA 57.050 30.769 0.00 0.00 0.00 1.52
886 3760 7.855784 ATTTGTACTCCCTCCATTTCTTTTT 57.144 32.000 0.00 0.00 0.00 1.94
887 3761 9.190317 GATATTTGTACTCCCTCCATTTCTTTT 57.810 33.333 0.00 0.00 0.00 2.27
888 3762 7.780271 GGATATTTGTACTCCCTCCATTTCTTT 59.220 37.037 0.00 0.00 0.00 2.52
889 3763 7.290813 GGATATTTGTACTCCCTCCATTTCTT 58.709 38.462 0.00 0.00 0.00 2.52
890 3764 6.183361 GGGATATTTGTACTCCCTCCATTTCT 60.183 42.308 9.40 0.00 44.49 2.52
891 3765 6.004574 GGGATATTTGTACTCCCTCCATTTC 58.995 44.000 9.40 0.00 44.49 2.17
892 3766 5.953571 GGGATATTTGTACTCCCTCCATTT 58.046 41.667 9.40 0.00 44.49 2.32
893 3767 5.584551 GGGATATTTGTACTCCCTCCATT 57.415 43.478 9.40 0.00 44.49 3.16
900 3774 2.132762 CGCGTGGGATATTTGTACTCC 58.867 52.381 0.00 0.00 0.00 3.85
901 3775 1.525619 GCGCGTGGGATATTTGTACTC 59.474 52.381 8.43 0.00 0.00 2.59
902 3776 1.578583 GCGCGTGGGATATTTGTACT 58.421 50.000 8.43 0.00 0.00 2.73
903 3777 0.231279 CGCGCGTGGGATATTTGTAC 59.769 55.000 24.19 0.00 0.00 2.90
904 3778 0.876777 CCGCGCGTGGGATATTTGTA 60.877 55.000 30.86 0.00 0.00 2.41
905 3779 2.177580 CCGCGCGTGGGATATTTGT 61.178 57.895 30.86 0.00 0.00 2.83
906 3780 2.631428 CCGCGCGTGGGATATTTG 59.369 61.111 30.86 4.86 0.00 2.32
907 3781 3.276846 GCCGCGCGTGGGATATTT 61.277 61.111 37.26 0.00 0.00 1.40
924 3798 3.673484 CAAGTTGCACCGCCTGGG 61.673 66.667 0.00 0.00 40.75 4.45
925 3799 3.673484 CCAAGTTGCACCGCCTGG 61.673 66.667 0.00 0.00 42.84 4.45
926 3800 3.673484 CCCAAGTTGCACCGCCTG 61.673 66.667 0.00 0.00 0.00 4.85
927 3801 3.884774 TCCCAAGTTGCACCGCCT 61.885 61.111 0.00 0.00 0.00 5.52
928 3802 3.670377 GTCCCAAGTTGCACCGCC 61.670 66.667 0.00 0.00 0.00 6.13
929 3803 4.025401 CGTCCCAAGTTGCACCGC 62.025 66.667 0.00 0.00 0.00 5.68
930 3804 4.025401 GCGTCCCAAGTTGCACCG 62.025 66.667 0.00 0.00 0.00 4.94
931 3805 3.670377 GGCGTCCCAAGTTGCACC 61.670 66.667 0.00 0.00 0.00 5.01
932 3806 2.904866 TGGCGTCCCAAGTTGCAC 60.905 61.111 0.00 0.00 38.46 4.57
947 3821 1.747367 TTAATTCGGGCTGCCGTGG 60.747 57.895 13.40 4.59 34.52 4.94
960 3834 1.134907 ACGACGGCGGAGATGTTAATT 60.135 47.619 18.49 0.00 43.17 1.40
963 3837 1.028330 AGACGACGGCGGAGATGTTA 61.028 55.000 18.49 0.00 43.17 2.41
985 3859 0.168128 GTCATTTTTCTGGGCGACGG 59.832 55.000 0.00 0.00 0.00 4.79
988 3862 2.151202 GTCTGTCATTTTTCTGGGCGA 58.849 47.619 0.00 0.00 0.00 5.54
992 3866 4.023707 GTGTCTGGTCTGTCATTTTTCTGG 60.024 45.833 0.00 0.00 0.00 3.86
997 3876 3.469008 TCGTGTCTGGTCTGTCATTTT 57.531 42.857 0.00 0.00 0.00 1.82
1003 3882 0.821517 TGTGTTCGTGTCTGGTCTGT 59.178 50.000 0.00 0.00 0.00 3.41
1007 3886 2.357637 CCATTTTGTGTTCGTGTCTGGT 59.642 45.455 0.00 0.00 0.00 4.00
1012 3891 1.107114 TGGCCATTTTGTGTTCGTGT 58.893 45.000 0.00 0.00 0.00 4.49
1014 3893 0.030101 CGTGGCCATTTTGTGTTCGT 59.970 50.000 9.72 0.00 0.00 3.85
1015 3894 0.662970 CCGTGGCCATTTTGTGTTCG 60.663 55.000 9.72 3.80 0.00 3.95
1016 3895 0.943835 GCCGTGGCCATTTTGTGTTC 60.944 55.000 9.72 0.00 34.56 3.18
1017 3896 1.068921 GCCGTGGCCATTTTGTGTT 59.931 52.632 9.72 0.00 34.56 3.32
1018 3897 2.733945 GCCGTGGCCATTTTGTGT 59.266 55.556 9.72 0.00 34.56 3.72
1019 3898 2.430582 CGCCGTGGCCATTTTGTG 60.431 61.111 9.72 0.29 37.98 3.33
1020 3899 2.596046 TCGCCGTGGCCATTTTGT 60.596 55.556 9.72 0.00 37.98 2.83
1171 4050 0.594602 CCATCGAGGAACGGCGTATA 59.405 55.000 15.20 0.00 41.22 1.47
1177 4056 2.582498 GACGCCATCGAGGAACGG 60.582 66.667 15.00 1.22 41.22 4.44
1321 4236 3.112709 GTGGAAGTCGCGCAGGTC 61.113 66.667 8.75 0.00 0.00 3.85
1322 4237 4.681978 GGTGGAAGTCGCGCAGGT 62.682 66.667 8.75 0.00 0.00 4.00
1413 4442 1.729586 AGAAGAAGTAGGTGGGCACA 58.270 50.000 0.00 0.00 0.00 4.57
1491 4520 2.359169 CCGGAAGCTGAGGCAGGTA 61.359 63.158 0.00 0.00 41.59 3.08
1495 4524 3.706373 GTCCCGGAAGCTGAGGCA 61.706 66.667 0.73 0.00 41.70 4.75
1901 4960 0.822164 CGAACGACCCATAGGAACCT 59.178 55.000 0.00 0.00 36.73 3.50
2059 5118 2.674380 CGCCAAGCTTGCCTTCCT 60.674 61.111 21.43 0.00 0.00 3.36
2117 5177 1.846439 ACACTGGAGGATATGGGGTTG 59.154 52.381 0.00 0.00 0.00 3.77
2123 5183 8.191446 CGGTTTATATAGACACTGGAGGATATG 58.809 40.741 5.83 0.00 0.00 1.78
2125 5185 6.662234 CCGGTTTATATAGACACTGGAGGATA 59.338 42.308 5.71 0.00 37.83 2.59
2133 5193 5.703310 AGTCCTCCGGTTTATATAGACACT 58.297 41.667 0.00 0.00 0.00 3.55
2175 5240 6.216801 AGCCTGTATGACTAACGTAATGAA 57.783 37.500 0.00 0.00 0.00 2.57
2183 5248 7.921745 CCTAAAAGTCTAGCCTGTATGACTAAC 59.078 40.741 0.00 0.00 38.63 2.34
2184 5249 7.069578 CCCTAAAAGTCTAGCCTGTATGACTAA 59.930 40.741 0.00 0.00 38.63 2.24
2279 5344 7.297588 TCTCTATGGAGGTAATACCCTACTTCT 59.702 40.741 5.71 0.00 39.75 2.85
2463 5528 2.165301 GTCGACGATTGAAGGGGCG 61.165 63.158 0.00 0.00 0.00 6.13


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.