Multiple sequence alignment - TraesCS5D01G473500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G473500 chr5D 100.000 2939 0 0 1 2939 513664643 513661705 0.000000e+00 5428.0
1 TraesCS5D01G473500 chr5D 85.912 937 100 17 1127 2060 513722244 513721337 0.000000e+00 970.0
2 TraesCS5D01G473500 chr5D 87.129 505 54 6 2056 2557 513714026 513713530 2.410000e-156 562.0
3 TraesCS5D01G473500 chr5D 81.614 446 33 26 811 1248 513695000 513694596 1.240000e-84 324.0
4 TraesCS5D01G473500 chr5D 100.000 167 0 0 3403 3569 513661241 513661075 3.460000e-80 309.0
5 TraesCS5D01G473500 chr5D 95.425 153 3 3 2788 2939 540840714 540840863 1.280000e-59 241.0
6 TraesCS5D01G473500 chr5D 89.333 75 4 4 3499 3569 254526349 254526423 1.360000e-14 91.6
7 TraesCS5D01G473500 chr5B 92.418 1886 115 13 687 2562 644613626 644611759 0.000000e+00 2665.0
8 TraesCS5D01G473500 chr5B 88.569 1111 121 2 1448 2558 644844306 644843202 0.000000e+00 1343.0
9 TraesCS5D01G473500 chr5B 92.787 305 19 1 1117 1418 644844607 644844303 4.230000e-119 438.0
10 TraesCS5D01G473500 chr5B 81.378 392 29 27 874 1248 644838740 644838376 2.710000e-71 279.0
11 TraesCS5D01G473500 chr5B 91.716 169 12 2 670 838 644613964 644613798 2.140000e-57 233.0
12 TraesCS5D01G473500 chr5B 84.444 135 17 4 2176 2308 610281379 610281247 2.890000e-26 130.0
13 TraesCS5D01G473500 chr5B 94.030 67 4 0 2871 2937 682864159 682864225 6.300000e-18 102.0
14 TraesCS5D01G473500 chr5A 91.409 1909 118 23 670 2562 641592153 641590275 0.000000e+00 2575.0
15 TraesCS5D01G473500 chr5A 87.374 697 85 1 1482 2178 641666734 641666041 0.000000e+00 797.0
16 TraesCS5D01G473500 chr5A 91.927 384 28 1 2174 2557 641641808 641641428 5.240000e-148 534.0
17 TraesCS5D01G473500 chr5A 90.865 208 13 4 1004 1206 641593960 641593754 1.260000e-69 274.0
18 TraesCS5D01G473500 chr2A 79.271 1399 210 45 1139 2508 707988241 707989588 0.000000e+00 904.0
19 TraesCS5D01G473500 chr2A 78.363 1368 244 34 1160 2510 763334023 763332691 0.000000e+00 839.0
20 TraesCS5D01G473500 chr2A 90.789 76 2 5 3499 3569 107218961 107219036 2.930000e-16 97.1
21 TraesCS5D01G473500 chr2A 94.737 57 3 0 3405 3461 24066615 24066559 4.910000e-14 89.8
22 TraesCS5D01G473500 chr2A 95.000 40 1 1 3454 3492 24066803 24066764 1.070000e-05 62.1
23 TraesCS5D01G473500 chr2B 79.043 1379 214 39 1157 2508 681217969 681219299 0.000000e+00 876.0
24 TraesCS5D01G473500 chr2B 75.237 1268 232 65 1277 2509 6178862 6180082 8.780000e-146 527.0
25 TraesCS5D01G473500 chr2B 93.220 59 4 0 3403 3461 35395709 35395651 1.770000e-13 87.9
26 TraesCS5D01G473500 chr2D 79.012 1377 205 49 1160 2505 568409197 568410520 0.000000e+00 865.0
27 TraesCS5D01G473500 chr2D 78.867 1377 217 40 1160 2508 568726329 568727659 0.000000e+00 863.0
28 TraesCS5D01G473500 chr2D 94.787 211 8 3 2561 2768 476933135 476933345 3.440000e-85 326.0
29 TraesCS5D01G473500 chr2D 98.305 59 1 0 3403 3461 22206085 22206027 1.750000e-18 104.0
30 TraesCS5D01G473500 chr2D 98.246 57 1 0 3403 3459 487362434 487362490 2.270000e-17 100.0
31 TraesCS5D01G473500 chr2D 89.333 75 4 4 3499 3569 431383818 431383744 1.360000e-14 91.6
32 TraesCS5D01G473500 chr2D 95.349 43 1 1 3454 3495 503449465 503449423 2.300000e-07 67.6
33 TraesCS5D01G473500 chr6B 84.964 685 82 11 1 669 277647820 277648499 0.000000e+00 675.0
34 TraesCS5D01G473500 chr6D 95.538 381 13 4 2563 2939 340106362 340106742 1.100000e-169 606.0
35 TraesCS5D01G473500 chr6D 95.261 211 6 4 2558 2764 276589278 276589068 7.390000e-87 331.0
36 TraesCS5D01G473500 chr6D 95.215 209 6 3 2563 2767 276587647 276587855 9.550000e-86 327.0
37 TraesCS5D01G473500 chr6D 94.787 211 8 3 2561 2768 415403479 415403269 3.440000e-85 326.0
38 TraesCS5D01G473500 chr6D 93.296 179 0 1 3403 3569 340107248 340107426 1.640000e-63 254.0
39 TraesCS5D01G473500 chr3D 95.276 381 13 5 2563 2939 18905849 18906228 1.830000e-167 599.0
40 TraesCS5D01G473500 chr3D 95.026 382 14 5 2562 2939 588865411 588865791 2.370000e-166 595.0
41 TraesCS5D01G473500 chr3D 93.717 382 15 6 2563 2939 500205456 500205833 6.690000e-157 564.0
42 TraesCS5D01G473500 chr7D 96.183 262 7 3 2562 2820 160655922 160656183 3.290000e-115 425.0
43 TraesCS5D01G473500 chr1B 74.343 647 131 30 1819 2452 589897810 589897186 3.560000e-60 243.0
44 TraesCS5D01G473500 chr1D 75.451 554 105 26 1840 2382 436086523 436085990 1.280000e-59 241.0
45 TraesCS5D01G473500 chr4A 92.000 175 5 4 2766 2939 627767120 627766954 1.660000e-58 237.0
46 TraesCS5D01G473500 chr4A 92.000 50 3 1 627 676 82622496 82622544 6.390000e-08 69.4
47 TraesCS5D01G473500 chrUn 94.737 57 3 0 3405 3461 277922484 277922540 4.910000e-14 89.8
48 TraesCS5D01G473500 chrUn 94.737 57 3 0 3405 3461 325845277 325845221 4.910000e-14 89.8
49 TraesCS5D01G473500 chrUn 95.000 40 1 1 3454 3492 277922296 277922335 1.070000e-05 62.1
50 TraesCS5D01G473500 chrUn 95.000 40 1 1 3454 3492 325845465 325845426 1.070000e-05 62.1
51 TraesCS5D01G473500 chr4D 84.211 76 10 2 595 668 493906714 493906639 4.940000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G473500 chr5D 513661075 513664643 3568 True 2868.5 5428 100.000 1 3569 2 chr5D.!!$R4 3568
1 TraesCS5D01G473500 chr5D 513721337 513722244 907 True 970.0 970 85.912 1127 2060 1 chr5D.!!$R3 933
2 TraesCS5D01G473500 chr5B 644611759 644613964 2205 True 1449.0 2665 92.067 670 2562 2 chr5B.!!$R3 1892
3 TraesCS5D01G473500 chr5B 644843202 644844607 1405 True 890.5 1343 90.678 1117 2558 2 chr5B.!!$R4 1441
4 TraesCS5D01G473500 chr5A 641590275 641593960 3685 True 1424.5 2575 91.137 670 2562 2 chr5A.!!$R3 1892
5 TraesCS5D01G473500 chr5A 641666041 641666734 693 True 797.0 797 87.374 1482 2178 1 chr5A.!!$R2 696
6 TraesCS5D01G473500 chr2A 707988241 707989588 1347 False 904.0 904 79.271 1139 2508 1 chr2A.!!$F2 1369
7 TraesCS5D01G473500 chr2A 763332691 763334023 1332 True 839.0 839 78.363 1160 2510 1 chr2A.!!$R1 1350
8 TraesCS5D01G473500 chr2B 681217969 681219299 1330 False 876.0 876 79.043 1157 2508 1 chr2B.!!$F2 1351
9 TraesCS5D01G473500 chr2B 6178862 6180082 1220 False 527.0 527 75.237 1277 2509 1 chr2B.!!$F1 1232
10 TraesCS5D01G473500 chr2D 568409197 568410520 1323 False 865.0 865 79.012 1160 2505 1 chr2D.!!$F3 1345
11 TraesCS5D01G473500 chr2D 568726329 568727659 1330 False 863.0 863 78.867 1160 2508 1 chr2D.!!$F4 1348
12 TraesCS5D01G473500 chr6B 277647820 277648499 679 False 675.0 675 84.964 1 669 1 chr6B.!!$F1 668
13 TraesCS5D01G473500 chr6D 340106362 340107426 1064 False 430.0 606 94.417 2563 3569 2 chr6D.!!$F2 1006
14 TraesCS5D01G473500 chr1B 589897186 589897810 624 True 243.0 243 74.343 1819 2452 1 chr1B.!!$R1 633
15 TraesCS5D01G473500 chr1D 436085990 436086523 533 True 241.0 241 75.451 1840 2382 1 chr1D.!!$R1 542

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
767 1722 0.095417 GCTTCCAGCTTCGCGTAAAG 59.905 55.0 5.77 4.33 38.45 1.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2598 4329 0.378257 CGTGGTACCAATCTGCATGC 59.622 55.0 18.31 11.82 0.0 4.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
46 48 2.765699 AGTCTCCTCTTCCTCTTGCATC 59.234 50.000 0.00 0.00 0.00 3.91
56 58 1.692121 CCTCTTGCATCTCTCCTCCCT 60.692 57.143 0.00 0.00 0.00 4.20
61 63 0.179051 GCATCTCTCCTCCCTTGCTG 60.179 60.000 0.00 0.00 0.00 4.41
65 67 1.229304 TCTCCTCCCTTGCTGCAGA 60.229 57.895 20.43 0.00 0.00 4.26
82 84 1.019278 AGATTGGCGCAAGTACACGG 61.019 55.000 10.83 0.00 41.68 4.94
100 102 4.007644 CCCTCGCTGCCACTCACA 62.008 66.667 0.00 0.00 0.00 3.58
101 103 2.740055 CCTCGCTGCCACTCACAC 60.740 66.667 0.00 0.00 0.00 3.82
103 105 3.231889 CTCGCTGCCACTCACACCT 62.232 63.158 0.00 0.00 0.00 4.00
104 106 3.046087 CGCTGCCACTCACACCTG 61.046 66.667 0.00 0.00 0.00 4.00
109 111 2.670934 CCACTCACACCTGGCAGC 60.671 66.667 9.56 0.00 0.00 5.25
110 112 2.670934 CACTCACACCTGGCAGCC 60.671 66.667 9.56 3.66 0.00 4.85
111 113 4.320456 ACTCACACCTGGCAGCCG 62.320 66.667 9.56 4.28 0.00 5.52
133 135 4.539083 TCCACGCCGCACAGTGTT 62.539 61.111 1.61 0.00 36.69 3.32
135 137 4.312231 CACGCCGCACAGTGTTGG 62.312 66.667 1.61 6.03 33.97 3.77
154 156 0.324943 GGCACCTCTTCCTTGCTGTA 59.675 55.000 0.00 0.00 36.46 2.74
155 157 1.065126 GGCACCTCTTCCTTGCTGTAT 60.065 52.381 0.00 0.00 36.46 2.29
156 158 2.284190 GCACCTCTTCCTTGCTGTATC 58.716 52.381 0.00 0.00 33.26 2.24
158 160 3.133003 GCACCTCTTCCTTGCTGTATCTA 59.867 47.826 0.00 0.00 33.26 1.98
159 161 4.739137 GCACCTCTTCCTTGCTGTATCTAG 60.739 50.000 0.00 0.00 33.26 2.43
160 162 4.646945 CACCTCTTCCTTGCTGTATCTAGA 59.353 45.833 0.00 0.00 0.00 2.43
161 163 5.304101 CACCTCTTCCTTGCTGTATCTAGAT 59.696 44.000 10.73 10.73 0.00 1.98
163 165 6.183360 ACCTCTTCCTTGCTGTATCTAGATTG 60.183 42.308 11.25 3.35 0.00 2.67
164 166 6.166984 TCTTCCTTGCTGTATCTAGATTGG 57.833 41.667 11.25 3.00 0.00 3.16
165 167 4.963318 TCCTTGCTGTATCTAGATTGGG 57.037 45.455 11.25 2.65 0.00 4.12
166 168 4.556697 TCCTTGCTGTATCTAGATTGGGA 58.443 43.478 11.25 5.86 0.00 4.37
167 169 5.158141 TCCTTGCTGTATCTAGATTGGGAT 58.842 41.667 11.25 0.00 0.00 3.85
171 173 3.194542 GCTGTATCTAGATTGGGATCGCT 59.805 47.826 11.25 0.00 37.37 4.93
173 175 3.511540 TGTATCTAGATTGGGATCGCTGG 59.488 47.826 11.25 0.00 37.37 4.85
175 177 0.321122 CTAGATTGGGATCGCTGGCC 60.321 60.000 11.46 0.00 37.37 5.36
177 179 3.757248 GATTGGGATCGCTGGCCGT 62.757 63.158 11.46 0.00 38.35 5.68
178 180 3.757248 ATTGGGATCGCTGGCCGTC 62.757 63.158 11.46 0.00 38.35 4.79
187 189 4.039357 CTGGCCGTCGTCGACAGT 62.039 66.667 24.13 0.00 39.71 3.55
190 192 4.380628 GCCGTCGTCGACAGTCGT 62.381 66.667 24.13 0.00 41.35 4.34
191 193 2.499098 CCGTCGTCGACAGTCGTG 60.499 66.667 24.13 15.71 41.35 4.35
192 194 3.157523 CGTCGTCGACAGTCGTGC 61.158 66.667 24.13 14.87 41.35 5.34
193 195 2.799916 GTCGTCGACAGTCGTGCC 60.800 66.667 22.16 10.69 41.35 5.01
194 196 4.034258 TCGTCGACAGTCGTGCCC 62.034 66.667 22.16 8.40 41.35 5.36
196 198 4.034258 GTCGACAGTCGTGCCCGA 62.034 66.667 22.16 0.00 41.35 5.14
197 199 3.733960 TCGACAGTCGTGCCCGAG 61.734 66.667 22.16 0.00 45.26 4.63
198 200 3.733960 CGACAGTCGTGCCCGAGA 61.734 66.667 15.21 0.00 45.26 4.04
199 201 2.885861 GACAGTCGTGCCCGAGAT 59.114 61.111 0.00 0.00 45.26 2.75
201 203 2.105128 CAGTCGTGCCCGAGATCC 59.895 66.667 0.00 0.00 45.26 3.36
202 204 3.518998 AGTCGTGCCCGAGATCCG 61.519 66.667 0.00 0.00 45.26 4.18
221 223 2.925170 ACGGCCTGGCTGTCTCTT 60.925 61.111 27.12 4.38 45.94 2.85
231 233 2.904664 CTGTCTCTTCAGCAACGCA 58.095 52.632 0.00 0.00 0.00 5.24
232 234 0.510359 CTGTCTCTTCAGCAACGCAC 59.490 55.000 0.00 0.00 0.00 5.34
233 235 1.215014 TGTCTCTTCAGCAACGCACG 61.215 55.000 0.00 0.00 0.00 5.34
234 236 1.664649 TCTCTTCAGCAACGCACGG 60.665 57.895 0.00 0.00 0.00 4.94
257 259 2.880770 TCCGTCATGGATTTTGGCC 58.119 52.632 0.00 0.00 43.74 5.36
258 260 0.682855 TCCGTCATGGATTTTGGCCC 60.683 55.000 0.00 0.00 43.74 5.80
259 261 0.969917 CCGTCATGGATTTTGGCCCA 60.970 55.000 0.00 0.00 42.00 5.36
260 262 0.173255 CGTCATGGATTTTGGCCCAC 59.827 55.000 0.00 0.00 34.92 4.61
261 263 0.173255 GTCATGGATTTTGGCCCACG 59.827 55.000 0.00 0.00 34.92 4.94
262 264 0.969917 TCATGGATTTTGGCCCACGG 60.970 55.000 0.00 0.00 34.92 4.94
264 266 2.036572 GGATTTTGGCCCACGGGA 59.963 61.111 6.21 0.00 37.50 5.14
265 267 2.052104 GGATTTTGGCCCACGGGAG 61.052 63.158 6.21 0.00 37.50 4.30
266 268 2.679996 ATTTTGGCCCACGGGAGC 60.680 61.111 6.21 0.00 37.50 4.70
279 281 3.334054 GGAGCCCTCCTTGGTGCT 61.334 66.667 7.08 0.00 46.16 4.40
280 282 2.270527 GAGCCCTCCTTGGTGCTC 59.729 66.667 10.75 10.75 45.14 4.26
281 283 3.672295 GAGCCCTCCTTGGTGCTCG 62.672 68.421 10.75 0.00 43.74 5.03
283 285 2.581354 CCCTCCTTGGTGCTCGAG 59.419 66.667 8.45 8.45 0.00 4.04
284 286 2.581354 CCTCCTTGGTGCTCGAGG 59.419 66.667 15.58 7.38 46.49 4.63
285 287 2.581354 CTCCTTGGTGCTCGAGGG 59.419 66.667 15.58 5.65 45.41 4.30
287 289 2.232298 CTCCTTGGTGCTCGAGGGAC 62.232 65.000 15.58 6.28 45.41 4.46
292 294 4.436998 GTGCTCGAGGGACCACGG 62.437 72.222 15.58 1.17 0.00 4.94
295 297 3.461773 CTCGAGGGACCACGGCAT 61.462 66.667 3.91 0.00 0.00 4.40
296 298 3.723235 CTCGAGGGACCACGGCATG 62.723 68.421 3.91 0.00 0.00 4.06
297 299 3.770040 CGAGGGACCACGGCATGA 61.770 66.667 0.00 0.00 0.00 3.07
298 300 2.668632 GAGGGACCACGGCATGAA 59.331 61.111 0.00 0.00 0.00 2.57
299 301 1.002624 GAGGGACCACGGCATGAAA 60.003 57.895 0.00 0.00 0.00 2.69
300 302 1.002134 AGGGACCACGGCATGAAAG 60.002 57.895 0.00 0.00 0.00 2.62
301 303 2.046285 GGGACCACGGCATGAAAGG 61.046 63.158 0.00 0.00 0.00 3.11
302 304 2.046285 GGACCACGGCATGAAAGGG 61.046 63.158 0.00 0.00 0.00 3.95
303 305 2.676471 ACCACGGCATGAAAGGGC 60.676 61.111 0.00 0.00 41.08 5.19
304 306 2.361610 CCACGGCATGAAAGGGCT 60.362 61.111 0.00 0.00 42.97 5.19
305 307 1.077787 CCACGGCATGAAAGGGCTA 60.078 57.895 0.00 0.00 42.97 3.93
306 308 1.376609 CCACGGCATGAAAGGGCTAC 61.377 60.000 0.00 0.00 42.97 3.58
307 309 0.392998 CACGGCATGAAAGGGCTACT 60.393 55.000 0.00 0.00 42.97 2.57
309 311 1.154205 CGGCATGAAAGGGCTACTCG 61.154 60.000 0.00 0.00 42.97 4.18
310 312 0.178068 GGCATGAAAGGGCTACTCGA 59.822 55.000 0.00 0.00 41.37 4.04
311 313 1.576356 GCATGAAAGGGCTACTCGAG 58.424 55.000 11.84 11.84 0.00 4.04
332 334 3.838120 GCTTTGAGCTTTGTCCATAACC 58.162 45.455 0.00 0.00 38.45 2.85
333 335 3.255642 GCTTTGAGCTTTGTCCATAACCA 59.744 43.478 0.00 0.00 38.45 3.67
334 336 4.082026 GCTTTGAGCTTTGTCCATAACCAT 60.082 41.667 0.00 0.00 38.45 3.55
335 337 5.389859 TTTGAGCTTTGTCCATAACCATG 57.610 39.130 0.00 0.00 0.00 3.66
336 338 8.990030 GCTTTGAGCTTTGTCCATAACCATGG 62.990 46.154 11.19 11.19 44.71 3.66
342 344 3.731136 CCATAACCATGGCGACCG 58.269 61.111 13.04 0.00 45.29 4.79
343 345 1.145156 CCATAACCATGGCGACCGA 59.855 57.895 13.04 0.00 45.29 4.69
346 348 0.179084 ATAACCATGGCGACCGACTG 60.179 55.000 13.04 0.00 0.00 3.51
347 349 1.252215 TAACCATGGCGACCGACTGA 61.252 55.000 13.04 0.00 0.00 3.41
348 350 1.899437 AACCATGGCGACCGACTGAT 61.899 55.000 13.04 0.00 0.00 2.90
349 351 1.153369 CCATGGCGACCGACTGATT 60.153 57.895 0.00 0.00 0.00 2.57
350 352 0.744414 CCATGGCGACCGACTGATTT 60.744 55.000 0.00 0.00 0.00 2.17
351 353 0.652592 CATGGCGACCGACTGATTTC 59.347 55.000 0.00 0.00 0.00 2.17
352 354 0.537188 ATGGCGACCGACTGATTTCT 59.463 50.000 0.00 0.00 0.00 2.52
353 355 0.320374 TGGCGACCGACTGATTTCTT 59.680 50.000 0.00 0.00 0.00 2.52
354 356 0.721718 GGCGACCGACTGATTTCTTG 59.278 55.000 0.00 0.00 0.00 3.02
356 358 1.428448 CGACCGACTGATTTCTTGCA 58.572 50.000 0.00 0.00 0.00 4.08
357 359 1.798223 CGACCGACTGATTTCTTGCAA 59.202 47.619 0.00 0.00 0.00 4.08
358 360 2.411547 CGACCGACTGATTTCTTGCAAC 60.412 50.000 0.00 0.00 0.00 4.17
359 361 2.548057 GACCGACTGATTTCTTGCAACA 59.452 45.455 0.00 0.00 0.00 3.33
360 362 2.948979 ACCGACTGATTTCTTGCAACAA 59.051 40.909 0.00 0.00 0.00 2.83
361 363 3.003689 ACCGACTGATTTCTTGCAACAAG 59.996 43.478 0.00 0.81 0.00 3.16
362 364 3.558505 CGACTGATTTCTTGCAACAAGG 58.441 45.455 7.44 0.00 0.00 3.61
363 365 3.250762 CGACTGATTTCTTGCAACAAGGA 59.749 43.478 7.44 0.00 0.00 3.36
364 366 4.083110 CGACTGATTTCTTGCAACAAGGAT 60.083 41.667 7.44 2.89 0.00 3.24
367 369 5.537674 ACTGATTTCTTGCAACAAGGATCTT 59.462 36.000 17.41 0.00 0.00 2.40
368 370 5.775686 TGATTTCTTGCAACAAGGATCTTG 58.224 37.500 17.41 6.15 0.00 3.02
370 372 5.596836 TTTCTTGCAACAAGGATCTTGTT 57.403 34.783 17.23 17.23 42.75 2.83
378 380 5.675684 AACAAGGATCTTGTTGTGGTTTT 57.324 34.783 20.81 0.00 40.70 2.43
380 382 4.956075 ACAAGGATCTTGTTGTGGTTTTCT 59.044 37.500 7.41 0.00 35.55 2.52
381 383 6.126409 ACAAGGATCTTGTTGTGGTTTTCTA 58.874 36.000 7.41 0.00 35.55 2.10
382 384 6.605594 ACAAGGATCTTGTTGTGGTTTTCTAA 59.394 34.615 7.41 0.00 35.55 2.10
383 385 7.123547 ACAAGGATCTTGTTGTGGTTTTCTAAA 59.876 33.333 7.41 0.00 35.55 1.85
384 386 7.654022 AGGATCTTGTTGTGGTTTTCTAAAA 57.346 32.000 0.00 0.00 0.00 1.52
385 387 7.489160 AGGATCTTGTTGTGGTTTTCTAAAAC 58.511 34.615 9.36 9.36 45.70 2.43
395 397 7.044589 GTGGTTTTCTAAAACAACAACAGTG 57.955 36.000 17.19 0.00 46.95 3.66
396 398 6.643360 GTGGTTTTCTAAAACAACAACAGTGT 59.357 34.615 17.19 0.00 46.95 3.55
412 414 2.713154 GTTGCAAACGACGGTGCT 59.287 55.556 21.54 0.00 41.48 4.40
413 415 1.063488 GTTGCAAACGACGGTGCTT 59.937 52.632 21.54 0.00 41.48 3.91
415 417 0.584396 TTGCAAACGACGGTGCTTAG 59.416 50.000 21.54 0.00 41.48 2.18
416 418 1.154469 GCAAACGACGGTGCTTAGC 60.154 57.895 15.98 0.00 37.78 3.09
417 419 1.837538 GCAAACGACGGTGCTTAGCA 61.838 55.000 15.98 1.39 37.78 3.49
418 420 0.163788 CAAACGACGGTGCTTAGCAG 59.836 55.000 7.34 0.00 40.08 4.24
431 433 2.993899 GCTTAGCAGCGACAACTTAGAA 59.006 45.455 0.00 0.00 35.91 2.10
433 435 4.093556 GCTTAGCAGCGACAACTTAGAAAT 59.906 41.667 0.00 0.00 35.91 2.17
434 436 5.530519 TTAGCAGCGACAACTTAGAAATG 57.469 39.130 0.00 0.00 0.00 2.32
435 437 2.160417 AGCAGCGACAACTTAGAAATGC 59.840 45.455 0.00 0.00 0.00 3.56
436 438 2.729156 GCAGCGACAACTTAGAAATGCC 60.729 50.000 0.00 0.00 0.00 4.40
437 439 2.744202 CAGCGACAACTTAGAAATGCCT 59.256 45.455 0.00 0.00 0.00 4.75
438 440 3.189287 CAGCGACAACTTAGAAATGCCTT 59.811 43.478 0.00 0.00 0.00 4.35
439 441 3.821033 AGCGACAACTTAGAAATGCCTTT 59.179 39.130 0.00 0.00 0.00 3.11
441 443 4.982295 GCGACAACTTAGAAATGCCTTTTT 59.018 37.500 0.00 0.00 0.00 1.94
442 444 5.107875 GCGACAACTTAGAAATGCCTTTTTG 60.108 40.000 0.00 0.00 0.00 2.44
443 445 5.107875 CGACAACTTAGAAATGCCTTTTTGC 60.108 40.000 0.00 0.00 0.00 3.68
444 446 5.669477 ACAACTTAGAAATGCCTTTTTGCA 58.331 33.333 0.00 0.00 46.94 4.08
445 447 6.112058 ACAACTTAGAAATGCCTTTTTGCAA 58.888 32.000 0.00 0.00 45.84 4.08
446 448 6.037062 ACAACTTAGAAATGCCTTTTTGCAAC 59.963 34.615 0.00 0.00 45.84 4.17
447 449 5.669477 ACTTAGAAATGCCTTTTTGCAACA 58.331 33.333 0.00 0.00 45.84 3.33
448 450 6.290605 ACTTAGAAATGCCTTTTTGCAACAT 58.709 32.000 0.00 0.00 45.84 2.71
449 451 6.424812 ACTTAGAAATGCCTTTTTGCAACATC 59.575 34.615 0.00 0.00 45.84 3.06
450 452 4.706035 AGAAATGCCTTTTTGCAACATCA 58.294 34.783 0.00 0.00 45.84 3.07
451 453 4.512571 AGAAATGCCTTTTTGCAACATCAC 59.487 37.500 0.00 0.00 45.84 3.06
452 454 2.237393 TGCCTTTTTGCAACATCACC 57.763 45.000 0.00 0.00 38.56 4.02
453 455 1.761784 TGCCTTTTTGCAACATCACCT 59.238 42.857 0.00 0.00 38.56 4.00
454 456 2.224018 TGCCTTTTTGCAACATCACCTC 60.224 45.455 0.00 0.00 38.56 3.85
455 457 2.036346 GCCTTTTTGCAACATCACCTCT 59.964 45.455 0.00 0.00 0.00 3.69
456 458 3.645884 CCTTTTTGCAACATCACCTCTG 58.354 45.455 0.00 0.00 0.00 3.35
457 459 3.068590 CCTTTTTGCAACATCACCTCTGT 59.931 43.478 0.00 0.00 0.00 3.41
458 460 4.441913 CCTTTTTGCAACATCACCTCTGTT 60.442 41.667 0.00 0.00 37.31 3.16
466 468 6.618287 CAACATCACCTCTGTTGTAGAAAA 57.382 37.500 7.77 0.00 45.31 2.29
467 469 7.026631 CAACATCACCTCTGTTGTAGAAAAA 57.973 36.000 7.77 0.00 45.31 1.94
496 498 5.437289 CAACAATACCTCTGTTGCAAGAA 57.563 39.130 0.00 0.00 45.07 2.52
497 499 5.830912 CAACAATACCTCTGTTGCAAGAAA 58.169 37.500 0.00 0.00 45.07 2.52
498 500 6.272318 CAACAATACCTCTGTTGCAAGAAAA 58.728 36.000 0.00 0.00 45.07 2.29
500 502 7.054491 ACAATACCTCTGTTGCAAGAAAAAT 57.946 32.000 0.00 0.00 0.00 1.82
502 504 7.014615 ACAATACCTCTGTTGCAAGAAAAATCT 59.985 33.333 0.00 0.00 0.00 2.40
503 505 5.192327 ACCTCTGTTGCAAGAAAAATCTG 57.808 39.130 0.00 0.00 0.00 2.90
504 506 3.985925 CCTCTGTTGCAAGAAAAATCTGC 59.014 43.478 0.00 0.00 0.00 4.26
507 509 5.603596 TCTGTTGCAAGAAAAATCTGCAAT 58.396 33.333 11.42 0.00 45.33 3.56
510 512 7.383029 TCTGTTGCAAGAAAAATCTGCAATAAG 59.617 33.333 11.42 11.80 45.33 1.73
511 513 7.208777 TGTTGCAAGAAAAATCTGCAATAAGA 58.791 30.769 11.42 0.00 45.33 2.10
512 514 7.169645 TGTTGCAAGAAAAATCTGCAATAAGAC 59.830 33.333 11.42 0.92 45.33 3.01
513 515 6.158598 TGCAAGAAAAATCTGCAATAAGACC 58.841 36.000 0.00 0.00 32.17 3.85
514 516 6.015180 TGCAAGAAAAATCTGCAATAAGACCT 60.015 34.615 0.00 0.00 32.17 3.85
515 517 6.529477 GCAAGAAAAATCTGCAATAAGACCTC 59.471 38.462 0.00 0.00 0.00 3.85
516 518 7.576477 GCAAGAAAAATCTGCAATAAGACCTCT 60.576 37.037 0.00 0.00 0.00 3.69
517 519 7.388460 AGAAAAATCTGCAATAAGACCTCTG 57.612 36.000 0.00 0.00 0.00 3.35
518 520 6.944862 AGAAAAATCTGCAATAAGACCTCTGT 59.055 34.615 0.00 0.00 0.00 3.41
520 522 6.506500 AAATCTGCAATAAGACCTCTGTTG 57.493 37.500 0.00 0.00 0.00 3.33
521 523 4.890158 TCTGCAATAAGACCTCTGTTGA 57.110 40.909 0.00 0.00 0.00 3.18
522 524 5.227569 TCTGCAATAAGACCTCTGTTGAA 57.772 39.130 0.00 0.00 0.00 2.69
523 525 5.620206 TCTGCAATAAGACCTCTGTTGAAA 58.380 37.500 0.00 0.00 0.00 2.69
524 526 6.061441 TCTGCAATAAGACCTCTGTTGAAAA 58.939 36.000 0.00 0.00 0.00 2.29
525 527 6.716628 TCTGCAATAAGACCTCTGTTGAAAAT 59.283 34.615 0.00 0.00 0.00 1.82
527 529 8.579850 TGCAATAAGACCTCTGTTGAAAATAT 57.420 30.769 0.00 0.00 0.00 1.28
528 530 9.023962 TGCAATAAGACCTCTGTTGAAAATATT 57.976 29.630 0.00 0.00 0.00 1.28
529 531 9.860898 GCAATAAGACCTCTGTTGAAAATATTT 57.139 29.630 0.00 0.00 0.00 1.40
534 536 4.764823 ACCTCTGTTGAAAATATTTCCGCA 59.235 37.500 0.10 0.00 0.00 5.69
535 537 5.242838 ACCTCTGTTGAAAATATTTCCGCAA 59.757 36.000 0.10 4.39 0.00 4.85
536 538 5.572896 CCTCTGTTGAAAATATTTCCGCAAC 59.427 40.000 22.03 22.03 36.92 4.17
537 539 6.078202 TCTGTTGAAAATATTTCCGCAACA 57.922 33.333 25.84 25.84 42.03 3.33
539 541 6.640499 TCTGTTGAAAATATTTCCGCAACAAG 59.360 34.615 26.58 22.45 43.14 3.16
540 542 5.176590 TGTTGAAAATATTTCCGCAACAAGC 59.823 36.000 25.65 11.84 41.53 4.01
542 544 2.959507 AATATTTCCGCAACAAGCCC 57.040 45.000 0.00 0.00 41.38 5.19
543 545 2.143876 ATATTTCCGCAACAAGCCCT 57.856 45.000 0.00 0.00 41.38 5.19
545 547 0.251341 ATTTCCGCAACAAGCCCTCT 60.251 50.000 0.00 0.00 41.38 3.69
547 549 0.618458 TTCCGCAACAAGCCCTCTAT 59.382 50.000 0.00 0.00 41.38 1.98
549 551 0.734889 CCGCAACAAGCCCTCTATTG 59.265 55.000 0.00 0.00 41.38 1.90
550 552 0.099436 CGCAACAAGCCCTCTATTGC 59.901 55.000 0.00 0.00 41.74 3.56
552 554 1.545582 GCAACAAGCCCTCTATTGCAA 59.454 47.619 0.00 0.00 44.01 4.08
577 579 2.577449 AAAACTTTGCAACGGTGGAG 57.423 45.000 0.90 0.00 0.00 3.86
578 580 0.744281 AAACTTTGCAACGGTGGAGG 59.256 50.000 0.90 0.00 0.00 4.30
579 581 1.734388 AACTTTGCAACGGTGGAGGC 61.734 55.000 0.90 0.00 0.00 4.70
580 582 3.254014 CTTTGCAACGGTGGAGGCG 62.254 63.158 0.90 0.00 0.00 5.52
581 583 3.758973 TTTGCAACGGTGGAGGCGA 62.759 57.895 0.90 0.00 0.00 5.54
582 584 4.980805 TGCAACGGTGGAGGCGAC 62.981 66.667 0.90 0.00 0.00 5.19
598 600 2.806856 GACGCTCGGCTGCTTGATG 61.807 63.158 0.00 0.00 0.00 3.07
599 601 4.233635 CGCTCGGCTGCTTGATGC 62.234 66.667 0.00 3.78 43.25 3.91
611 613 1.468054 GCTTGATGCACCAAATCGGAC 60.468 52.381 0.00 0.00 42.31 4.79
612 614 0.801872 TTGATGCACCAAATCGGACG 59.198 50.000 0.00 0.00 38.63 4.79
613 615 1.024046 TGATGCACCAAATCGGACGG 61.024 55.000 0.00 0.00 38.63 4.79
615 617 2.746277 GCACCAAATCGGACGGCT 60.746 61.111 0.00 0.00 38.63 5.52
616 618 2.750888 GCACCAAATCGGACGGCTC 61.751 63.158 0.00 0.00 38.63 4.70
618 620 3.564027 CCAAATCGGACGGCTCGC 61.564 66.667 0.00 0.00 36.56 5.03
619 621 3.913573 CAAATCGGACGGCTCGCG 61.914 66.667 0.00 0.00 0.00 5.87
620 622 4.124351 AAATCGGACGGCTCGCGA 62.124 61.111 9.26 9.26 0.00 5.87
626 628 4.194720 GACGGCTCGCGACTGGAT 62.195 66.667 3.71 0.00 0.00 3.41
627 629 4.498520 ACGGCTCGCGACTGGATG 62.499 66.667 3.71 0.00 0.00 3.51
628 630 4.193334 CGGCTCGCGACTGGATGA 62.193 66.667 3.71 0.00 0.00 2.92
630 632 1.663074 GGCTCGCGACTGGATGATC 60.663 63.158 3.71 0.00 0.00 2.92
632 634 0.249238 GCTCGCGACTGGATGATCTT 60.249 55.000 3.71 0.00 0.00 2.40
633 635 1.804372 GCTCGCGACTGGATGATCTTT 60.804 52.381 3.71 0.00 0.00 2.52
634 636 2.544685 CTCGCGACTGGATGATCTTTT 58.455 47.619 3.71 0.00 0.00 2.27
636 638 4.112634 CTCGCGACTGGATGATCTTTTAA 58.887 43.478 3.71 0.00 0.00 1.52
639 641 5.410132 TCGCGACTGGATGATCTTTTAAAAA 59.590 36.000 3.71 0.00 0.00 1.94
640 642 5.734498 CGCGACTGGATGATCTTTTAAAAAG 59.266 40.000 0.00 0.00 0.00 2.27
641 643 6.402118 CGCGACTGGATGATCTTTTAAAAAGA 60.402 38.462 0.00 0.00 0.00 2.52
642 644 7.475840 GCGACTGGATGATCTTTTAAAAAGAT 58.524 34.615 0.00 0.00 39.53 2.40
650 652 4.434713 TCTTTTAAAAAGATCAGCCGGC 57.565 40.909 21.89 21.89 0.00 6.13
651 653 2.911819 TTTAAAAAGATCAGCCGGCG 57.088 45.000 23.20 16.49 0.00 6.46
652 654 2.102070 TTAAAAAGATCAGCCGGCGA 57.898 45.000 23.20 21.50 0.00 5.54
655 657 1.635663 AAAAGATCAGCCGGCGAACG 61.636 55.000 23.20 11.45 43.80 3.95
657 659 3.554692 GATCAGCCGGCGAACGTG 61.555 66.667 23.20 14.04 42.24 4.49
658 660 4.373116 ATCAGCCGGCGAACGTGT 62.373 61.111 23.20 0.00 42.24 4.49
659 661 2.877360 GATCAGCCGGCGAACGTGTA 62.877 60.000 23.20 4.11 42.24 2.90
660 662 2.884087 ATCAGCCGGCGAACGTGTAG 62.884 60.000 23.20 3.75 42.24 2.74
681 683 1.202521 CCCGCCCCAATTTTATCAAGC 60.203 52.381 0.00 0.00 0.00 4.01
693 1648 4.591321 TTTATCAAGCCAGGGTCAGATT 57.409 40.909 10.79 0.00 0.00 2.40
714 1669 9.390795 CAGATTTGACTCAACTATCACAAAAAG 57.609 33.333 0.00 0.00 32.51 2.27
715 1670 8.078596 AGATTTGACTCAACTATCACAAAAAGC 58.921 33.333 0.00 0.00 32.51 3.51
716 1671 6.942532 TTGACTCAACTATCACAAAAAGCT 57.057 33.333 0.00 0.00 0.00 3.74
717 1672 6.545504 TGACTCAACTATCACAAAAAGCTC 57.454 37.500 0.00 0.00 0.00 4.09
721 1676 7.771183 ACTCAACTATCACAAAAAGCTCAAAA 58.229 30.769 0.00 0.00 0.00 2.44
722 1677 8.416329 ACTCAACTATCACAAAAAGCTCAAAAT 58.584 29.630 0.00 0.00 0.00 1.82
766 1721 1.296056 GGCTTCCAGCTTCGCGTAAA 61.296 55.000 5.77 0.00 41.99 2.01
767 1722 0.095417 GCTTCCAGCTTCGCGTAAAG 59.905 55.000 5.77 4.33 38.45 1.85
798 1753 5.882557 TGCTTGATTGAATTAACCTCTCCTC 59.117 40.000 0.00 0.00 0.00 3.71
799 1754 5.007136 GCTTGATTGAATTAACCTCTCCTCG 59.993 44.000 0.00 0.00 0.00 4.63
834 2118 2.373707 GCCTGCATCCTCCACCTCT 61.374 63.158 0.00 0.00 0.00 3.69
855 2139 1.153901 GCTGTGGCATGTCACATGC 60.154 57.895 31.77 31.35 45.26 4.06
856 2140 1.868987 GCTGTGGCATGTCACATGCA 61.869 55.000 37.26 23.49 45.26 3.96
857 2141 0.815095 CTGTGGCATGTCACATGCAT 59.185 50.000 37.26 0.00 45.26 3.96
858 2142 0.528470 TGTGGCATGTCACATGCATG 59.472 50.000 37.26 25.09 46.21 4.06
884 2168 1.129811 GTGTTTATGTTTCCCGCCGAG 59.870 52.381 0.00 0.00 0.00 4.63
889 2173 3.703127 GTTTCCCGCCGAGGAGGT 61.703 66.667 10.93 0.00 45.00 3.85
918 2202 1.001068 TCCGTCCACTAATTTGTGCGA 59.999 47.619 13.70 9.92 36.68 5.10
971 2255 2.203280 CTCCACAAACGGCCACCA 60.203 61.111 2.24 0.00 0.00 4.17
995 2279 4.373116 GCCAAGGACGCCGACTGA 62.373 66.667 0.00 0.00 0.00 3.41
1037 2335 4.767255 CTCCACTCGGCCAGGCAC 62.767 72.222 15.19 1.34 0.00 5.01
1042 2340 3.390521 CTCGGCCAGGCACCAGTA 61.391 66.667 15.19 0.00 0.00 2.74
1046 2344 2.742372 GCCAGGCACCAGTACACG 60.742 66.667 6.55 0.00 0.00 4.49
1077 2383 4.074970 CCAAAGCCCGCATTAATATCTCT 58.925 43.478 0.00 0.00 0.00 3.10
1078 2384 4.154918 CCAAAGCCCGCATTAATATCTCTC 59.845 45.833 0.00 0.00 0.00 3.20
1079 2385 3.618690 AGCCCGCATTAATATCTCTCC 57.381 47.619 0.00 0.00 0.00 3.71
1080 2386 2.093973 AGCCCGCATTAATATCTCTCCG 60.094 50.000 0.00 0.00 0.00 4.63
1155 2464 2.577059 CTCGCAAGGAAGCCGGTA 59.423 61.111 1.90 0.00 38.47 4.02
1311 3007 2.044946 GCCGCCAACCTGGAGATT 60.045 61.111 0.00 0.00 39.92 2.40
1653 3361 2.426023 GGATTGCCGCCGATACCT 59.574 61.111 0.00 0.00 0.00 3.08
1731 3440 1.965414 TGGAGCTGTCCCAAAGGATA 58.035 50.000 0.00 0.00 46.41 2.59
1809 3518 4.899239 GCCATCGTCTCCGGCCTG 62.899 72.222 0.00 0.00 40.07 4.85
2535 4266 1.437986 GCTGGCGGATCTAACGAGT 59.562 57.895 0.00 0.00 0.00 4.18
2578 4309 2.349886 GCCGAGAGTTAATTGCACAGAG 59.650 50.000 0.00 0.00 0.00 3.35
2579 4310 3.589988 CCGAGAGTTAATTGCACAGAGT 58.410 45.455 0.00 0.00 0.00 3.24
2585 4316 5.701290 AGAGTTAATTGCACAGAGTTACCAC 59.299 40.000 0.00 0.00 0.00 4.16
2613 4344 2.675767 CATCGCATGCAGATTGGTAC 57.324 50.000 19.57 0.00 0.00 3.34
2630 4361 5.303747 TGGTACCACGATTGCTAATTTTG 57.696 39.130 11.60 0.00 0.00 2.44
2642 4374 4.062293 TGCTAATTTTGCGTGTCAGTACT 58.938 39.130 0.00 0.00 0.00 2.73
2829 4564 2.461637 CCCCCTCCTCCCCTCTTT 59.538 66.667 0.00 0.00 0.00 2.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
46 48 1.221293 CTGCAGCAAGGGAGGAGAG 59.779 63.158 0.00 0.00 0.00 3.20
56 58 2.480853 CTTGCGCCAATCTGCAGCAA 62.481 55.000 9.47 8.00 43.25 3.91
61 63 0.179189 GTGTACTTGCGCCAATCTGC 60.179 55.000 4.18 0.00 0.00 4.26
65 67 2.686816 GCCGTGTACTTGCGCCAAT 61.687 57.895 4.18 0.00 0.00 3.16
93 95 2.670934 GGCTGCCAGGTGTGAGTG 60.671 66.667 15.17 0.00 0.00 3.51
94 96 4.320456 CGGCTGCCAGGTGTGAGT 62.320 66.667 20.29 0.00 0.00 3.41
116 118 4.539083 AACACTGTGCGGCGTGGA 62.539 61.111 9.37 0.00 35.51 4.02
122 124 3.964875 GTGCCCAACACTGTGCGG 61.965 66.667 7.90 8.73 46.41 5.69
130 132 0.178992 CAAGGAAGAGGTGCCCAACA 60.179 55.000 0.00 0.00 0.00 3.33
132 134 1.228552 GCAAGGAAGAGGTGCCCAA 60.229 57.895 0.00 0.00 31.94 4.12
133 135 2.156098 AGCAAGGAAGAGGTGCCCA 61.156 57.895 0.00 0.00 39.13 5.36
135 137 0.324943 TACAGCAAGGAAGAGGTGCC 59.675 55.000 0.00 0.00 39.13 5.01
136 138 2.093235 AGATACAGCAAGGAAGAGGTGC 60.093 50.000 0.00 0.00 36.76 5.01
138 140 4.873010 TCTAGATACAGCAAGGAAGAGGT 58.127 43.478 0.00 0.00 0.00 3.85
140 142 6.222389 CCAATCTAGATACAGCAAGGAAGAG 58.778 44.000 5.46 0.00 0.00 2.85
141 143 5.070981 CCCAATCTAGATACAGCAAGGAAGA 59.929 44.000 5.46 0.00 0.00 2.87
142 144 5.070981 TCCCAATCTAGATACAGCAAGGAAG 59.929 44.000 5.46 0.00 0.00 3.46
143 145 4.968719 TCCCAATCTAGATACAGCAAGGAA 59.031 41.667 5.46 0.00 0.00 3.36
144 146 4.556697 TCCCAATCTAGATACAGCAAGGA 58.443 43.478 5.46 2.42 0.00 3.36
145 147 4.963318 TCCCAATCTAGATACAGCAAGG 57.037 45.455 5.46 0.09 0.00 3.61
146 148 5.167121 CGATCCCAATCTAGATACAGCAAG 58.833 45.833 5.46 0.00 0.00 4.01
147 149 4.561530 GCGATCCCAATCTAGATACAGCAA 60.562 45.833 5.46 0.00 0.00 3.91
148 150 3.056536 GCGATCCCAATCTAGATACAGCA 60.057 47.826 5.46 0.00 0.00 4.41
149 151 3.194542 AGCGATCCCAATCTAGATACAGC 59.805 47.826 5.46 5.56 0.00 4.40
151 153 3.511540 CCAGCGATCCCAATCTAGATACA 59.488 47.826 5.46 0.00 0.00 2.29
154 156 1.277557 GCCAGCGATCCCAATCTAGAT 59.722 52.381 0.00 0.00 0.00 1.98
155 157 0.681733 GCCAGCGATCCCAATCTAGA 59.318 55.000 0.00 0.00 0.00 2.43
156 158 0.321122 GGCCAGCGATCCCAATCTAG 60.321 60.000 0.00 0.00 0.00 2.43
158 160 2.512896 GGCCAGCGATCCCAATCT 59.487 61.111 0.00 0.00 0.00 2.40
159 161 2.974698 CGGCCAGCGATCCCAATC 60.975 66.667 2.24 0.00 0.00 2.67
160 162 3.757248 GACGGCCAGCGATCCCAAT 62.757 63.158 2.24 0.00 0.00 3.16
161 163 4.467084 GACGGCCAGCGATCCCAA 62.467 66.667 2.24 0.00 0.00 4.12
171 173 4.034258 GACTGTCGACGACGGCCA 62.034 66.667 31.57 10.83 43.97 5.36
173 175 4.380628 ACGACTGTCGACGACGGC 62.381 66.667 33.99 23.22 43.74 5.68
175 177 3.157523 GCACGACTGTCGACGACG 61.158 66.667 33.99 21.85 43.74 5.12
177 179 4.034258 GGGCACGACTGTCGACGA 62.034 66.667 33.99 0.00 43.74 4.20
179 181 3.948086 CTCGGGCACGACTGTCGAC 62.948 68.421 33.99 23.97 45.59 4.20
181 183 2.921538 GATCTCGGGCACGACTGTCG 62.922 65.000 26.94 26.94 45.59 4.35
183 185 2.711922 GGATCTCGGGCACGACTGT 61.712 63.158 7.15 0.00 45.59 3.55
184 186 2.105128 GGATCTCGGGCACGACTG 59.895 66.667 7.15 0.00 45.59 3.51
185 187 3.518998 CGGATCTCGGGCACGACT 61.519 66.667 7.15 0.00 45.59 4.18
203 205 3.245668 AAGAGACAGCCAGGCCGTG 62.246 63.158 4.55 1.39 0.00 4.94
204 206 2.925170 AAGAGACAGCCAGGCCGT 60.925 61.111 8.22 2.97 0.00 5.68
205 207 2.125350 GAAGAGACAGCCAGGCCG 60.125 66.667 8.22 0.00 0.00 6.13
206 208 1.078567 CTGAAGAGACAGCCAGGCC 60.079 63.158 8.22 0.00 0.00 5.19
207 209 4.613929 CTGAAGAGACAGCCAGGC 57.386 61.111 1.84 1.84 0.00 4.85
213 215 0.510359 GTGCGTTGCTGAAGAGACAG 59.490 55.000 0.00 0.00 40.43 3.51
214 216 1.215014 CGTGCGTTGCTGAAGAGACA 61.215 55.000 0.00 0.00 0.00 3.41
216 218 1.664649 CCGTGCGTTGCTGAAGAGA 60.665 57.895 0.00 0.00 0.00 3.10
217 219 2.856032 CCGTGCGTTGCTGAAGAG 59.144 61.111 0.00 0.00 0.00 2.85
218 220 3.345808 GCCGTGCGTTGCTGAAGA 61.346 61.111 0.00 0.00 0.00 2.87
240 242 0.969917 TGGGCCAAAATCCATGACGG 60.970 55.000 2.13 0.00 0.00 4.79
241 243 0.173255 GTGGGCCAAAATCCATGACG 59.827 55.000 8.40 0.00 35.28 4.35
242 244 0.173255 CGTGGGCCAAAATCCATGAC 59.827 55.000 8.40 0.00 41.33 3.06
244 246 1.516892 CCGTGGGCCAAAATCCATG 59.483 57.895 8.40 0.00 39.20 3.66
246 248 2.283532 CCCGTGGGCCAAAATCCA 60.284 61.111 8.40 0.00 0.00 3.41
247 249 2.036572 TCCCGTGGGCCAAAATCC 59.963 61.111 8.40 0.00 34.68 3.01
248 250 2.710902 GCTCCCGTGGGCCAAAATC 61.711 63.158 8.40 0.00 34.68 2.17
249 251 2.679996 GCTCCCGTGGGCCAAAAT 60.680 61.111 8.40 0.00 34.68 1.82
262 264 3.336814 GAGCACCAAGGAGGGCTCC 62.337 68.421 15.90 0.00 46.49 4.70
264 266 3.710722 CGAGCACCAAGGAGGGCT 61.711 66.667 0.00 0.00 43.74 5.19
265 267 3.672295 CTCGAGCACCAAGGAGGGC 62.672 68.421 0.00 0.00 43.89 5.19
266 268 2.581354 CTCGAGCACCAAGGAGGG 59.419 66.667 0.00 0.00 43.89 4.30
267 269 2.581354 CCTCGAGCACCAAGGAGG 59.419 66.667 6.99 0.00 45.67 4.30
268 270 1.984570 TCCCTCGAGCACCAAGGAG 60.985 63.158 6.99 0.00 31.44 3.69
269 271 2.119611 TCCCTCGAGCACCAAGGA 59.880 61.111 6.99 4.16 31.44 3.36
272 274 2.525629 TGGTCCCTCGAGCACCAA 60.526 61.111 24.84 13.06 41.50 3.67
278 280 3.461773 ATGCCGTGGTCCCTCGAG 61.462 66.667 5.13 5.13 35.30 4.04
279 281 3.770040 CATGCCGTGGTCCCTCGA 61.770 66.667 9.22 0.00 35.30 4.04
280 282 2.796483 TTTCATGCCGTGGTCCCTCG 62.796 60.000 0.95 0.95 0.00 4.63
281 283 1.002624 TTTCATGCCGTGGTCCCTC 60.003 57.895 0.00 0.00 0.00 4.30
283 285 2.046285 CCTTTCATGCCGTGGTCCC 61.046 63.158 0.00 0.00 0.00 4.46
284 286 2.046285 CCCTTTCATGCCGTGGTCC 61.046 63.158 0.00 0.00 0.00 4.46
285 287 2.700773 GCCCTTTCATGCCGTGGTC 61.701 63.158 0.00 0.00 0.00 4.02
287 289 1.077787 TAGCCCTTTCATGCCGTGG 60.078 57.895 0.00 0.00 0.00 4.94
288 290 0.392998 AGTAGCCCTTTCATGCCGTG 60.393 55.000 0.00 0.00 0.00 4.94
289 291 0.107654 GAGTAGCCCTTTCATGCCGT 60.108 55.000 0.00 0.00 0.00 5.68
290 292 1.154205 CGAGTAGCCCTTTCATGCCG 61.154 60.000 0.00 0.00 0.00 5.69
291 293 0.178068 TCGAGTAGCCCTTTCATGCC 59.822 55.000 0.00 0.00 0.00 4.40
292 294 1.576356 CTCGAGTAGCCCTTTCATGC 58.424 55.000 3.62 0.00 0.00 4.06
293 295 1.576356 GCTCGAGTAGCCCTTTCATG 58.424 55.000 15.13 0.00 46.25 3.07
311 313 3.255642 TGGTTATGGACAAAGCTCAAAGC 59.744 43.478 0.00 0.00 42.84 3.51
312 314 5.404946 CATGGTTATGGACAAAGCTCAAAG 58.595 41.667 0.00 0.00 0.00 2.77
313 315 5.389859 CATGGTTATGGACAAAGCTCAAA 57.610 39.130 0.00 0.00 0.00 2.69
326 328 0.179084 AGTCGGTCGCCATGGTTATG 60.179 55.000 14.67 1.22 0.00 1.90
328 330 1.216977 CAGTCGGTCGCCATGGTTA 59.783 57.895 14.67 0.00 0.00 2.85
329 331 1.899437 ATCAGTCGGTCGCCATGGTT 61.899 55.000 14.67 0.00 0.00 3.67
330 332 1.899437 AATCAGTCGGTCGCCATGGT 61.899 55.000 14.67 0.00 0.00 3.55
332 334 0.652592 GAAATCAGTCGGTCGCCATG 59.347 55.000 0.00 0.00 0.00 3.66
333 335 0.537188 AGAAATCAGTCGGTCGCCAT 59.463 50.000 0.00 0.00 0.00 4.40
334 336 0.320374 AAGAAATCAGTCGGTCGCCA 59.680 50.000 0.00 0.00 0.00 5.69
335 337 0.721718 CAAGAAATCAGTCGGTCGCC 59.278 55.000 0.00 0.00 0.00 5.54
336 338 0.095417 GCAAGAAATCAGTCGGTCGC 59.905 55.000 0.00 0.00 0.00 5.19
337 339 1.428448 TGCAAGAAATCAGTCGGTCG 58.572 50.000 0.00 0.00 0.00 4.79
339 341 2.571212 TGTTGCAAGAAATCAGTCGGT 58.429 42.857 0.00 0.00 0.00 4.69
340 342 3.558505 CTTGTTGCAAGAAATCAGTCGG 58.441 45.455 10.53 0.00 0.00 4.79
341 343 3.250762 TCCTTGTTGCAAGAAATCAGTCG 59.749 43.478 10.53 0.00 0.00 4.18
342 344 4.836125 TCCTTGTTGCAAGAAATCAGTC 57.164 40.909 10.53 0.00 0.00 3.51
343 345 5.075493 AGATCCTTGTTGCAAGAAATCAGT 58.925 37.500 18.13 2.01 0.00 3.41
346 348 5.776744 ACAAGATCCTTGTTGCAAGAAATC 58.223 37.500 10.53 10.96 29.38 2.17
347 349 5.796424 ACAAGATCCTTGTTGCAAGAAAT 57.204 34.783 10.53 1.87 29.38 2.17
348 350 5.596836 AACAAGATCCTTGTTGCAAGAAA 57.403 34.783 20.27 2.55 40.70 2.52
356 358 5.422012 AGAAAACCACAACAAGATCCTTGTT 59.578 36.000 16.62 16.62 42.75 2.83
357 359 4.956075 AGAAAACCACAACAAGATCCTTGT 59.044 37.500 6.53 6.53 0.00 3.16
358 360 5.520376 AGAAAACCACAACAAGATCCTTG 57.480 39.130 5.26 5.26 0.00 3.61
359 361 7.654022 TTTAGAAAACCACAACAAGATCCTT 57.346 32.000 0.00 0.00 0.00 3.36
360 362 7.123547 TGTTTTAGAAAACCACAACAAGATCCT 59.876 33.333 13.80 0.00 45.82 3.24
361 363 7.262048 TGTTTTAGAAAACCACAACAAGATCC 58.738 34.615 13.80 0.00 45.82 3.36
362 364 8.592155 GTTGTTTTAGAAAACCACAACAAGATC 58.408 33.333 13.80 0.00 45.82 2.75
363 365 8.091449 TGTTGTTTTAGAAAACCACAACAAGAT 58.909 29.630 17.61 0.00 45.58 2.40
364 366 7.434492 TGTTGTTTTAGAAAACCACAACAAGA 58.566 30.769 17.61 2.78 45.58 3.02
370 372 6.642950 CACTGTTGTTGTTTTAGAAAACCACA 59.357 34.615 16.53 16.53 46.34 4.17
372 374 6.750148 ACACTGTTGTTGTTTTAGAAAACCA 58.250 32.000 13.80 2.06 45.82 3.67
373 375 7.646446 AACACTGTTGTTGTTTTAGAAAACC 57.354 32.000 13.80 2.32 44.66 3.27
387 389 1.465020 CGTCGTTTGCAACACTGTTGT 60.465 47.619 20.54 0.00 37.67 3.32
388 390 1.179332 CGTCGTTTGCAACACTGTTG 58.821 50.000 16.36 16.36 0.00 3.33
389 391 0.098025 CCGTCGTTTGCAACACTGTT 59.902 50.000 0.00 0.00 0.00 3.16
391 393 0.588730 CACCGTCGTTTGCAACACTG 60.589 55.000 0.00 0.00 0.00 3.66
394 396 1.649390 AAGCACCGTCGTTTGCAACA 61.649 50.000 15.99 0.00 41.48 3.33
395 397 0.305313 TAAGCACCGTCGTTTGCAAC 59.695 50.000 15.99 0.00 41.48 4.17
396 398 0.584396 CTAAGCACCGTCGTTTGCAA 59.416 50.000 15.99 0.00 41.48 4.08
398 400 1.154469 GCTAAGCACCGTCGTTTGC 60.154 57.895 7.77 7.77 39.16 3.68
399 401 0.163788 CTGCTAAGCACCGTCGTTTG 59.836 55.000 0.00 0.00 33.79 2.93
400 402 2.528797 CTGCTAAGCACCGTCGTTT 58.471 52.632 0.00 0.00 33.79 3.60
401 403 4.261888 CTGCTAAGCACCGTCGTT 57.738 55.556 0.00 0.00 33.79 3.85
410 412 2.607187 TCTAAGTTGTCGCTGCTAAGC 58.393 47.619 0.00 0.00 46.66 3.09
411 413 5.554636 CATTTCTAAGTTGTCGCTGCTAAG 58.445 41.667 0.00 0.00 0.00 2.18
412 414 4.142902 GCATTTCTAAGTTGTCGCTGCTAA 60.143 41.667 0.00 0.00 0.00 3.09
413 415 3.370978 GCATTTCTAAGTTGTCGCTGCTA 59.629 43.478 0.00 0.00 0.00 3.49
415 417 2.509870 GCATTTCTAAGTTGTCGCTGC 58.490 47.619 0.00 0.00 0.00 5.25
416 418 2.744202 AGGCATTTCTAAGTTGTCGCTG 59.256 45.455 0.00 0.00 0.00 5.18
417 419 3.059352 AGGCATTTCTAAGTTGTCGCT 57.941 42.857 0.00 0.00 0.00 4.93
418 420 3.831715 AAGGCATTTCTAAGTTGTCGC 57.168 42.857 0.00 0.00 0.00 5.19
419 421 5.107875 GCAAAAAGGCATTTCTAAGTTGTCG 60.108 40.000 0.00 0.00 0.00 4.35
422 424 6.036953 TGTTGCAAAAAGGCATTTCTAAGTTG 59.963 34.615 0.00 0.00 44.48 3.16
425 427 6.424509 TGATGTTGCAAAAAGGCATTTCTAAG 59.575 34.615 0.00 0.00 44.48 2.18
426 428 6.202570 GTGATGTTGCAAAAAGGCATTTCTAA 59.797 34.615 0.00 0.00 44.48 2.10
427 429 5.695816 GTGATGTTGCAAAAAGGCATTTCTA 59.304 36.000 0.00 0.00 44.48 2.10
429 431 4.319694 GGTGATGTTGCAAAAAGGCATTTC 60.320 41.667 0.00 0.00 44.48 2.17
431 433 3.140623 GGTGATGTTGCAAAAAGGCATT 58.859 40.909 0.00 0.00 44.48 3.56
433 435 1.761784 AGGTGATGTTGCAAAAAGGCA 59.238 42.857 0.00 0.00 43.19 4.75
434 436 2.036346 AGAGGTGATGTTGCAAAAAGGC 59.964 45.455 0.00 0.00 0.00 4.35
435 437 3.068590 ACAGAGGTGATGTTGCAAAAAGG 59.931 43.478 0.00 0.00 0.00 3.11
436 438 4.311816 ACAGAGGTGATGTTGCAAAAAG 57.688 40.909 0.00 0.00 0.00 2.27
437 439 4.734398 AACAGAGGTGATGTTGCAAAAA 57.266 36.364 0.00 0.00 39.36 1.94
475 477 6.463995 TTTTCTTGCAACAGAGGTATTGTT 57.536 33.333 0.00 0.00 39.23 2.83
476 478 6.463995 TTTTTCTTGCAACAGAGGTATTGT 57.536 33.333 0.00 0.00 0.00 2.71
477 479 7.327761 CAGATTTTTCTTGCAACAGAGGTATTG 59.672 37.037 0.00 0.00 0.00 1.90
478 480 7.373493 CAGATTTTTCTTGCAACAGAGGTATT 58.627 34.615 0.00 0.00 0.00 1.89
479 481 6.571150 GCAGATTTTTCTTGCAACAGAGGTAT 60.571 38.462 0.00 0.00 0.00 2.73
480 482 5.278463 GCAGATTTTTCTTGCAACAGAGGTA 60.278 40.000 0.00 0.00 0.00 3.08
481 483 4.500375 GCAGATTTTTCTTGCAACAGAGGT 60.500 41.667 0.00 0.00 0.00 3.85
482 484 3.985925 GCAGATTTTTCTTGCAACAGAGG 59.014 43.478 0.00 0.00 0.00 3.69
483 485 4.613944 TGCAGATTTTTCTTGCAACAGAG 58.386 39.130 0.00 0.00 32.17 3.35
484 486 4.652421 TGCAGATTTTTCTTGCAACAGA 57.348 36.364 0.00 0.00 32.17 3.41
485 487 5.917541 ATTGCAGATTTTTCTTGCAACAG 57.082 34.783 12.62 0.00 46.17 3.16
487 489 7.359514 GGTCTTATTGCAGATTTTTCTTGCAAC 60.360 37.037 12.62 1.85 46.17 4.17
489 491 6.015180 AGGTCTTATTGCAGATTTTTCTTGCA 60.015 34.615 0.00 0.00 0.00 4.08
491 493 7.754027 CAGAGGTCTTATTGCAGATTTTTCTTG 59.246 37.037 0.00 0.00 0.00 3.02
493 495 6.944862 ACAGAGGTCTTATTGCAGATTTTTCT 59.055 34.615 0.00 0.00 0.00 2.52
494 496 7.150783 ACAGAGGTCTTATTGCAGATTTTTC 57.849 36.000 0.00 0.00 0.00 2.29
496 498 6.716628 TCAACAGAGGTCTTATTGCAGATTTT 59.283 34.615 0.00 0.00 0.00 1.82
497 499 6.240894 TCAACAGAGGTCTTATTGCAGATTT 58.759 36.000 0.00 0.00 0.00 2.17
498 500 5.809001 TCAACAGAGGTCTTATTGCAGATT 58.191 37.500 0.00 0.00 0.00 2.40
500 502 4.890158 TCAACAGAGGTCTTATTGCAGA 57.110 40.909 0.00 0.00 0.00 4.26
502 504 6.899393 ATTTTCAACAGAGGTCTTATTGCA 57.101 33.333 0.00 0.00 0.00 4.08
503 505 9.860898 AAATATTTTCAACAGAGGTCTTATTGC 57.139 29.630 0.00 0.00 0.00 3.56
507 509 7.148306 GCGGAAATATTTTCAACAGAGGTCTTA 60.148 37.037 7.26 0.00 0.00 2.10
510 512 5.106317 TGCGGAAATATTTTCAACAGAGGTC 60.106 40.000 7.26 0.00 0.00 3.85
511 513 4.764823 TGCGGAAATATTTTCAACAGAGGT 59.235 37.500 7.26 0.00 0.00 3.85
512 514 5.309323 TGCGGAAATATTTTCAACAGAGG 57.691 39.130 7.26 0.00 0.00 3.69
513 515 6.148948 TGTTGCGGAAATATTTTCAACAGAG 58.851 36.000 24.63 6.51 38.86 3.35
514 516 6.078202 TGTTGCGGAAATATTTTCAACAGA 57.922 33.333 24.63 13.61 38.86 3.41
515 517 6.616260 GCTTGTTGCGGAAATATTTTCAACAG 60.616 38.462 25.69 22.36 42.77 3.16
516 518 5.176590 GCTTGTTGCGGAAATATTTTCAACA 59.823 36.000 24.63 24.63 41.04 3.33
517 519 5.389411 GGCTTGTTGCGGAAATATTTTCAAC 60.389 40.000 21.87 21.87 44.05 3.18
518 520 4.688413 GGCTTGTTGCGGAAATATTTTCAA 59.312 37.500 7.26 7.18 44.05 2.69
520 522 3.616821 GGGCTTGTTGCGGAAATATTTTC 59.383 43.478 1.43 0.00 44.05 2.29
521 523 3.260632 AGGGCTTGTTGCGGAAATATTTT 59.739 39.130 1.43 0.00 44.05 1.82
522 524 2.831526 AGGGCTTGTTGCGGAAATATTT 59.168 40.909 0.00 0.00 44.05 1.40
523 525 2.427095 GAGGGCTTGTTGCGGAAATATT 59.573 45.455 0.00 0.00 44.05 1.28
524 526 2.024414 GAGGGCTTGTTGCGGAAATAT 58.976 47.619 0.00 0.00 44.05 1.28
525 527 1.004277 AGAGGGCTTGTTGCGGAAATA 59.996 47.619 0.00 0.00 44.05 1.40
527 529 0.398696 TAGAGGGCTTGTTGCGGAAA 59.601 50.000 0.00 0.00 44.05 3.13
528 530 0.618458 ATAGAGGGCTTGTTGCGGAA 59.382 50.000 0.00 0.00 44.05 4.30
529 531 0.618458 AATAGAGGGCTTGTTGCGGA 59.382 50.000 0.00 0.00 44.05 5.54
530 532 0.734889 CAATAGAGGGCTTGTTGCGG 59.265 55.000 0.00 0.00 44.05 5.69
531 533 0.099436 GCAATAGAGGGCTTGTTGCG 59.901 55.000 0.00 0.00 44.05 4.85
534 536 4.953940 TTTTTGCAATAGAGGGCTTGTT 57.046 36.364 0.00 0.00 0.00 2.83
557 559 2.418060 CCTCCACCGTTGCAAAGTTTTT 60.418 45.455 11.48 0.00 0.00 1.94
558 560 1.136110 CCTCCACCGTTGCAAAGTTTT 59.864 47.619 11.48 0.00 0.00 2.43
559 561 0.744281 CCTCCACCGTTGCAAAGTTT 59.256 50.000 11.48 0.00 0.00 2.66
560 562 1.734388 GCCTCCACCGTTGCAAAGTT 61.734 55.000 11.48 0.00 0.00 2.66
561 563 2.193536 GCCTCCACCGTTGCAAAGT 61.194 57.895 11.48 4.62 0.00 2.66
563 565 3.283684 CGCCTCCACCGTTGCAAA 61.284 61.111 0.00 0.00 0.00 3.68
564 566 4.243008 TCGCCTCCACCGTTGCAA 62.243 61.111 0.00 0.00 0.00 4.08
565 567 4.980805 GTCGCCTCCACCGTTGCA 62.981 66.667 0.00 0.00 0.00 4.08
580 582 2.510238 ATCAAGCAGCCGAGCGTC 60.510 61.111 0.00 0.00 40.15 5.19
581 583 2.816958 CATCAAGCAGCCGAGCGT 60.817 61.111 0.00 0.00 40.15 5.07
582 584 4.233635 GCATCAAGCAGCCGAGCG 62.234 66.667 0.00 0.00 44.79 5.03
591 593 0.810648 TCCGATTTGGTGCATCAAGC 59.189 50.000 13.02 8.40 39.49 4.01
592 594 1.202065 CGTCCGATTTGGTGCATCAAG 60.202 52.381 13.02 1.16 39.52 3.02
593 595 0.801872 CGTCCGATTTGGTGCATCAA 59.198 50.000 8.71 8.71 39.52 2.57
594 596 1.024046 CCGTCCGATTTGGTGCATCA 61.024 55.000 0.00 0.00 39.52 3.07
595 597 1.721487 CCGTCCGATTTGGTGCATC 59.279 57.895 0.00 0.00 39.52 3.91
598 600 2.746277 AGCCGTCCGATTTGGTGC 60.746 61.111 0.00 0.00 39.52 5.01
599 601 2.452813 CGAGCCGTCCGATTTGGTG 61.453 63.158 0.00 0.00 39.52 4.17
600 602 2.125673 CGAGCCGTCCGATTTGGT 60.126 61.111 0.00 0.00 39.52 3.67
601 603 3.564027 GCGAGCCGTCCGATTTGG 61.564 66.667 0.00 0.00 40.09 3.28
602 604 3.913573 CGCGAGCCGTCCGATTTG 61.914 66.667 0.00 0.00 0.00 2.32
604 606 4.849329 GTCGCGAGCCGTCCGATT 62.849 66.667 10.24 0.00 38.35 3.34
611 613 3.490793 ATCATCCAGTCGCGAGCCG 62.491 63.158 10.24 0.00 38.61 5.52
612 614 1.663074 GATCATCCAGTCGCGAGCC 60.663 63.158 10.24 0.00 0.00 4.70
613 615 0.249238 AAGATCATCCAGTCGCGAGC 60.249 55.000 10.24 4.59 0.00 5.03
615 617 2.672961 AAAAGATCATCCAGTCGCGA 57.327 45.000 3.71 3.71 0.00 5.87
616 618 4.857871 TTTAAAAGATCATCCAGTCGCG 57.142 40.909 0.00 0.00 0.00 5.87
628 630 4.438744 CGCCGGCTGATCTTTTTAAAAGAT 60.439 41.667 26.87 26.87 39.53 2.40
630 632 3.119990 TCGCCGGCTGATCTTTTTAAAAG 60.120 43.478 26.68 10.89 0.00 2.27
632 634 2.428491 TCGCCGGCTGATCTTTTTAAA 58.572 42.857 26.68 0.00 0.00 1.52
633 635 2.102070 TCGCCGGCTGATCTTTTTAA 57.898 45.000 26.68 0.00 0.00 1.52
634 636 1.735571 GTTCGCCGGCTGATCTTTTTA 59.264 47.619 26.68 3.76 0.00 1.52
636 638 1.635663 CGTTCGCCGGCTGATCTTTT 61.636 55.000 26.68 0.00 0.00 2.27
639 641 3.760035 ACGTTCGCCGGCTGATCT 61.760 61.111 26.68 9.43 42.24 2.75
640 642 2.877360 TACACGTTCGCCGGCTGATC 62.877 60.000 26.68 19.50 42.24 2.92
641 643 2.884087 CTACACGTTCGCCGGCTGAT 62.884 60.000 26.68 10.31 42.24 2.90
642 644 3.620300 CTACACGTTCGCCGGCTGA 62.620 63.158 26.68 20.38 42.24 4.26
643 645 3.179265 CTACACGTTCGCCGGCTG 61.179 66.667 26.68 18.13 42.24 4.85
655 657 1.254975 AAAATTGGGGCGGGCTACAC 61.255 55.000 0.26 0.00 0.00 2.90
657 659 1.611977 GATAAAATTGGGGCGGGCTAC 59.388 52.381 0.26 0.00 0.00 3.58
658 660 1.215673 TGATAAAATTGGGGCGGGCTA 59.784 47.619 0.26 0.00 0.00 3.93
659 661 0.032615 TGATAAAATTGGGGCGGGCT 60.033 50.000 0.26 0.00 0.00 5.19
660 662 0.827368 TTGATAAAATTGGGGCGGGC 59.173 50.000 0.00 0.00 0.00 6.13
661 663 1.202521 GCTTGATAAAATTGGGGCGGG 60.203 52.381 0.00 0.00 0.00 6.13
662 664 1.202521 GGCTTGATAAAATTGGGGCGG 60.203 52.381 0.00 0.00 0.00 6.13
665 667 2.435437 CCCTGGCTTGATAAAATTGGGG 59.565 50.000 0.00 0.00 0.00 4.96
666 668 3.106827 ACCCTGGCTTGATAAAATTGGG 58.893 45.455 0.00 0.00 38.13 4.12
667 669 3.768757 TGACCCTGGCTTGATAAAATTGG 59.231 43.478 0.00 0.00 0.00 3.16
668 670 4.706476 TCTGACCCTGGCTTGATAAAATTG 59.294 41.667 0.00 0.00 0.00 2.32
693 1648 6.542005 TGAGCTTTTTGTGATAGTTGAGTCAA 59.458 34.615 0.08 0.08 0.00 3.18
704 1659 7.288810 TCTGGTATTTTGAGCTTTTTGTGAT 57.711 32.000 0.00 0.00 0.00 3.06
714 1669 4.192317 AGGACGAATCTGGTATTTTGAGC 58.808 43.478 0.00 0.00 0.00 4.26
715 1670 4.504461 CGAGGACGAATCTGGTATTTTGAG 59.496 45.833 0.00 0.00 42.66 3.02
716 1671 4.081862 ACGAGGACGAATCTGGTATTTTGA 60.082 41.667 0.00 0.00 42.66 2.69
717 1672 4.032900 CACGAGGACGAATCTGGTATTTTG 59.967 45.833 0.00 0.00 42.66 2.44
721 1676 2.358267 GACACGAGGACGAATCTGGTAT 59.642 50.000 0.00 0.00 42.66 2.73
722 1677 1.741706 GACACGAGGACGAATCTGGTA 59.258 52.381 0.00 0.00 42.66 3.25
768 1723 8.195436 AGAGGTTAATTCAATCAAGCAATCATG 58.805 33.333 0.00 0.00 0.00 3.07
769 1724 8.302515 AGAGGTTAATTCAATCAAGCAATCAT 57.697 30.769 0.00 0.00 0.00 2.45
770 1725 7.148018 GGAGAGGTTAATTCAATCAAGCAATCA 60.148 37.037 0.00 0.00 0.00 2.57
771 1726 7.067981 AGGAGAGGTTAATTCAATCAAGCAATC 59.932 37.037 0.00 0.00 0.00 2.67
772 1727 6.894103 AGGAGAGGTTAATTCAATCAAGCAAT 59.106 34.615 0.00 0.00 0.00 3.56
774 1729 5.819991 AGGAGAGGTTAATTCAATCAAGCA 58.180 37.500 0.00 0.00 0.00 3.91
775 1730 5.007136 CGAGGAGAGGTTAATTCAATCAAGC 59.993 44.000 0.00 0.00 0.00 4.01
798 1753 1.669115 CACAGTTGAGGTGGAGGCG 60.669 63.158 0.00 0.00 32.65 5.52
799 1754 1.968540 GCACAGTTGAGGTGGAGGC 60.969 63.158 0.00 0.00 36.76 4.70
834 2118 1.451072 TGTGACATGCCACAGCTCA 59.549 52.632 11.13 0.00 41.63 4.26
855 2139 4.236935 GGAAACATAAACACAGCCACATG 58.763 43.478 0.00 0.00 0.00 3.21
856 2140 3.258123 GGGAAACATAAACACAGCCACAT 59.742 43.478 0.00 0.00 0.00 3.21
857 2141 2.625790 GGGAAACATAAACACAGCCACA 59.374 45.455 0.00 0.00 0.00 4.17
858 2142 2.351350 CGGGAAACATAAACACAGCCAC 60.351 50.000 0.00 0.00 0.00 5.01
884 2168 0.101939 GACGGACGTCCATTACCTCC 59.898 60.000 32.80 1.87 39.08 4.30
949 2233 2.556287 GCCGTTTGTGGAGCGAAG 59.444 61.111 0.00 0.00 33.36 3.79
950 2234 2.975799 GGCCGTTTGTGGAGCGAA 60.976 61.111 0.00 0.00 33.36 4.70
951 2235 4.243008 TGGCCGTTTGTGGAGCGA 62.243 61.111 0.00 0.00 33.36 4.93
952 2236 4.025401 GTGGCCGTTTGTGGAGCG 62.025 66.667 0.00 0.00 0.00 5.03
991 2275 5.126067 GGGATATTTGTACATGCTGTCAGT 58.874 41.667 0.00 0.00 0.00 3.41
995 2279 5.116084 AGTGGGATATTTGTACATGCTGT 57.884 39.130 0.00 0.00 0.00 4.40
1058 2356 3.617531 CGGAGAGATATTAATGCGGGCTT 60.618 47.826 0.00 0.00 0.00 4.35
1311 3007 2.436109 GGCAGGCAGTGGAAGGAA 59.564 61.111 0.00 0.00 0.00 3.36
1593 3301 1.227497 CATCTCCCGGAAGCTCAGC 60.227 63.158 0.73 0.00 0.00 4.26
1653 3361 4.819761 GCGGCGAGGTGATCTGCA 62.820 66.667 12.98 0.00 31.66 4.41
2535 4266 1.227999 CGGCGCTTTTCTTCCACTGA 61.228 55.000 7.64 0.00 0.00 3.41
2578 4309 1.134175 CGATGCCCCAATTGTGGTAAC 59.866 52.381 8.84 2.15 44.30 2.50
2579 4310 1.468985 CGATGCCCCAATTGTGGTAA 58.531 50.000 8.84 0.00 44.30 2.85
2585 4316 4.742274 CATGCGATGCCCCAATTG 57.258 55.556 0.00 0.00 0.00 2.32
2598 4329 0.378257 CGTGGTACCAATCTGCATGC 59.622 55.000 18.31 11.82 0.00 4.06
2605 4336 5.751243 AATTAGCAATCGTGGTACCAATC 57.249 39.130 18.31 4.02 37.45 2.67
2613 4344 2.593775 CACGCAAAATTAGCAATCGTGG 59.406 45.455 0.00 0.00 41.14 4.94
2630 4361 2.993899 AGCAATGTTAGTACTGACACGC 59.006 45.455 25.06 25.06 33.71 5.34
2829 4564 3.015145 GGCTAGGGTGGGGAAGCA 61.015 66.667 0.00 0.00 0.00 3.91


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.