Multiple sequence alignment - TraesCS5D01G472500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G472500 chr5D 100.000 3859 0 0 1 3859 513281672 513285530 0.000000e+00 7127.0
1 TraesCS5D01G472500 chr5D 98.108 687 9 3 3174 3859 433706470 433705787 0.000000e+00 1194.0
2 TraesCS5D01G472500 chr5D 97.962 687 10 2 3174 3859 431703048 431703731 0.000000e+00 1188.0
3 TraesCS5D01G472500 chr5D 96.382 691 15 4 3174 3859 513201102 513201787 0.000000e+00 1129.0
4 TraesCS5D01G472500 chr5B 95.593 3063 114 11 128 3178 13466221 13469274 0.000000e+00 4889.0
5 TraesCS5D01G472500 chr5B 96.345 684 8 4 3174 3856 522365556 522366223 0.000000e+00 1109.0
6 TraesCS5D01G472500 chr5B 96.215 687 9 4 3174 3859 522913108 522912438 0.000000e+00 1109.0
7 TraesCS5D01G472500 chr1B 95.370 540 13 6 3332 3859 668763398 668762859 0.000000e+00 848.0
8 TraesCS5D01G472500 chr1A 94.915 531 19 5 3332 3859 576784295 576783770 0.000000e+00 824.0
9 TraesCS5D01G472500 chr1D 94.184 533 17 7 3332 3859 480438614 480438091 0.000000e+00 800.0
10 TraesCS5D01G472500 chr1D 90.323 93 4 3 3250 3337 480438727 480438635 2.440000e-22 117.0
11 TraesCS5D01G472500 chr1D 95.238 42 2 0 367 408 275771801 275771842 2.490000e-07 67.6
12 TraesCS5D01G472500 chr7D 96.069 407 15 1 544 949 498846506 498846912 0.000000e+00 662.0
13 TraesCS5D01G472500 chr7D 96.069 407 15 1 544 949 498851366 498851772 0.000000e+00 662.0
14 TraesCS5D01G472500 chr7D 96.069 407 15 1 544 949 498856046 498856452 0.000000e+00 662.0
15 TraesCS5D01G472500 chr7D 96.069 407 15 1 544 949 498861114 498861520 0.000000e+00 662.0
16 TraesCS5D01G472500 chrUn 95.238 42 2 0 367 408 349949713 349949672 2.490000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G472500 chr5D 513281672 513285530 3858 False 7127.0 7127 100.0000 1 3859 1 chr5D.!!$F3 3858
1 TraesCS5D01G472500 chr5D 433705787 433706470 683 True 1194.0 1194 98.1080 3174 3859 1 chr5D.!!$R1 685
2 TraesCS5D01G472500 chr5D 431703048 431703731 683 False 1188.0 1188 97.9620 3174 3859 1 chr5D.!!$F1 685
3 TraesCS5D01G472500 chr5D 513201102 513201787 685 False 1129.0 1129 96.3820 3174 3859 1 chr5D.!!$F2 685
4 TraesCS5D01G472500 chr5B 13466221 13469274 3053 False 4889.0 4889 95.5930 128 3178 1 chr5B.!!$F1 3050
5 TraesCS5D01G472500 chr5B 522365556 522366223 667 False 1109.0 1109 96.3450 3174 3856 1 chr5B.!!$F2 682
6 TraesCS5D01G472500 chr5B 522912438 522913108 670 True 1109.0 1109 96.2150 3174 3859 1 chr5B.!!$R1 685
7 TraesCS5D01G472500 chr1B 668762859 668763398 539 True 848.0 848 95.3700 3332 3859 1 chr1B.!!$R1 527
8 TraesCS5D01G472500 chr1A 576783770 576784295 525 True 824.0 824 94.9150 3332 3859 1 chr1A.!!$R1 527
9 TraesCS5D01G472500 chr1D 480438091 480438727 636 True 458.5 800 92.2535 3250 3859 2 chr1D.!!$R1 609

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
93 94 1.000163 ACGGCTACAGTGACTGACAAG 60.000 52.381 20.97 13.74 35.18 3.16 F
1505 1511 0.033699 AAGGATGGGCTGAGCTTTCC 60.034 55.000 3.72 8.48 0.00 3.13 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2019 2027 0.108662 GGCCACAAGCACCATAAAGC 60.109 55.0 0.0 0.0 46.50 3.51 R
3019 3032 0.677731 CCACCACGGATGCAACAGAT 60.678 55.0 0.3 0.0 36.56 2.90 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 3.330267 GGATAGATCCTGTTTCGGATGC 58.670 50.000 0.98 0.00 43.71 3.91
30 31 3.007398 GGATAGATCCTGTTTCGGATGCT 59.993 47.826 0.98 0.00 43.71 3.79
31 32 4.503991 GGATAGATCCTGTTTCGGATGCTT 60.504 45.833 0.98 0.00 43.71 3.91
32 33 3.356529 AGATCCTGTTTCGGATGCTTT 57.643 42.857 0.00 0.00 43.71 3.51
33 34 3.690460 AGATCCTGTTTCGGATGCTTTT 58.310 40.909 0.00 0.00 43.71 2.27
34 35 3.691609 AGATCCTGTTTCGGATGCTTTTC 59.308 43.478 0.00 0.00 43.71 2.29
35 36 2.159382 TCCTGTTTCGGATGCTTTTCC 58.841 47.619 0.00 0.00 0.00 3.13
36 37 1.885887 CCTGTTTCGGATGCTTTTCCA 59.114 47.619 2.58 0.00 35.34 3.53
37 38 2.351738 CCTGTTTCGGATGCTTTTCCAC 60.352 50.000 2.58 0.00 35.34 4.02
38 39 2.554032 CTGTTTCGGATGCTTTTCCACT 59.446 45.455 2.58 0.00 35.34 4.00
39 40 2.293122 TGTTTCGGATGCTTTTCCACTG 59.707 45.455 2.58 0.00 35.34 3.66
40 41 2.270352 TTCGGATGCTTTTCCACTGT 57.730 45.000 2.58 0.00 35.34 3.55
41 42 3.410631 TTCGGATGCTTTTCCACTGTA 57.589 42.857 2.58 0.00 35.34 2.74
42 43 3.627395 TCGGATGCTTTTCCACTGTAT 57.373 42.857 2.58 0.00 35.34 2.29
43 44 3.270027 TCGGATGCTTTTCCACTGTATG 58.730 45.455 2.58 0.00 35.34 2.39
44 45 2.223340 CGGATGCTTTTCCACTGTATGC 60.223 50.000 2.58 0.00 35.34 3.14
45 46 2.754552 GGATGCTTTTCCACTGTATGCA 59.245 45.455 0.00 0.00 35.72 3.96
46 47 3.382546 GGATGCTTTTCCACTGTATGCAT 59.617 43.478 3.79 3.79 41.51 3.96
47 48 4.580167 GGATGCTTTTCCACTGTATGCATA 59.420 41.667 1.16 1.16 39.36 3.14
48 49 5.242393 GGATGCTTTTCCACTGTATGCATAT 59.758 40.000 10.16 0.00 39.36 1.78
49 50 6.430925 GGATGCTTTTCCACTGTATGCATATA 59.569 38.462 10.16 6.32 39.36 0.86
50 51 6.866010 TGCTTTTCCACTGTATGCATATAG 57.134 37.500 24.25 24.25 0.00 1.31
51 52 6.591001 TGCTTTTCCACTGTATGCATATAGA 58.409 36.000 30.39 11.21 0.00 1.98
52 53 6.483307 TGCTTTTCCACTGTATGCATATAGAC 59.517 38.462 30.39 13.13 0.00 2.59
53 54 6.708054 GCTTTTCCACTGTATGCATATAGACT 59.292 38.462 30.39 11.65 0.00 3.24
54 55 7.227512 GCTTTTCCACTGTATGCATATAGACTT 59.772 37.037 30.39 11.01 0.00 3.01
55 56 8.662781 TTTTCCACTGTATGCATATAGACTTC 57.337 34.615 30.39 9.01 0.00 3.01
56 57 6.013842 TCCACTGTATGCATATAGACTTCG 57.986 41.667 30.39 15.46 0.00 3.79
57 58 4.623167 CCACTGTATGCATATAGACTTCGC 59.377 45.833 30.39 7.68 0.00 4.70
58 59 5.465051 CACTGTATGCATATAGACTTCGCT 58.535 41.667 30.39 9.08 0.00 4.93
59 60 5.570973 CACTGTATGCATATAGACTTCGCTC 59.429 44.000 30.39 6.55 0.00 5.03
60 61 5.475220 ACTGTATGCATATAGACTTCGCTCT 59.525 40.000 30.39 7.80 0.00 4.09
61 62 6.655425 ACTGTATGCATATAGACTTCGCTCTA 59.345 38.462 30.39 0.00 0.00 2.43
62 63 7.338196 ACTGTATGCATATAGACTTCGCTCTAT 59.662 37.037 30.39 6.71 37.29 1.98
63 64 8.056407 TGTATGCATATAGACTTCGCTCTATT 57.944 34.615 10.16 0.00 35.48 1.73
64 65 9.174166 TGTATGCATATAGACTTCGCTCTATTA 57.826 33.333 10.16 0.00 35.48 0.98
67 68 7.539436 TGCATATAGACTTCGCTCTATTAAGG 58.461 38.462 0.00 0.00 35.48 2.69
68 69 7.393515 TGCATATAGACTTCGCTCTATTAAGGA 59.606 37.037 0.00 0.00 35.48 3.36
69 70 8.410141 GCATATAGACTTCGCTCTATTAAGGAT 58.590 37.037 0.00 0.00 35.48 3.24
75 76 8.452534 AGACTTCGCTCTATTAAGGATATAACG 58.547 37.037 0.00 0.00 0.00 3.18
76 77 7.536855 ACTTCGCTCTATTAAGGATATAACGG 58.463 38.462 0.00 0.00 0.00 4.44
77 78 5.888105 TCGCTCTATTAAGGATATAACGGC 58.112 41.667 0.00 0.00 0.00 5.68
78 79 5.651139 TCGCTCTATTAAGGATATAACGGCT 59.349 40.000 0.00 0.00 0.00 5.52
79 80 6.825213 TCGCTCTATTAAGGATATAACGGCTA 59.175 38.462 0.00 0.00 0.00 3.93
80 81 6.911511 CGCTCTATTAAGGATATAACGGCTAC 59.088 42.308 0.00 0.00 0.00 3.58
81 82 7.414873 CGCTCTATTAAGGATATAACGGCTACA 60.415 40.741 0.00 0.00 0.00 2.74
82 83 7.916450 GCTCTATTAAGGATATAACGGCTACAG 59.084 40.741 0.00 0.00 0.00 2.74
83 84 8.874744 TCTATTAAGGATATAACGGCTACAGT 57.125 34.615 0.00 0.00 0.00 3.55
84 85 8.737175 TCTATTAAGGATATAACGGCTACAGTG 58.263 37.037 0.00 0.00 0.00 3.66
85 86 6.964807 TTAAGGATATAACGGCTACAGTGA 57.035 37.500 0.00 0.00 0.00 3.41
86 87 4.850347 AGGATATAACGGCTACAGTGAC 57.150 45.455 0.00 0.00 0.00 3.67
87 88 4.471548 AGGATATAACGGCTACAGTGACT 58.528 43.478 0.00 0.00 0.00 3.41
88 89 4.278669 AGGATATAACGGCTACAGTGACTG 59.721 45.833 11.70 11.70 37.52 3.51
89 90 4.277672 GGATATAACGGCTACAGTGACTGA 59.722 45.833 20.97 2.05 35.18 3.41
90 91 3.505464 ATAACGGCTACAGTGACTGAC 57.495 47.619 20.97 7.97 35.18 3.51
91 92 1.037493 AACGGCTACAGTGACTGACA 58.963 50.000 20.97 5.55 35.18 3.58
92 93 1.037493 ACGGCTACAGTGACTGACAA 58.963 50.000 20.97 3.31 35.18 3.18
93 94 1.000163 ACGGCTACAGTGACTGACAAG 60.000 52.381 20.97 13.74 35.18 3.16
94 95 1.269723 CGGCTACAGTGACTGACAAGA 59.730 52.381 20.97 0.00 35.18 3.02
95 96 2.678324 GGCTACAGTGACTGACAAGAC 58.322 52.381 20.97 11.61 35.18 3.01
96 97 2.610727 GGCTACAGTGACTGACAAGACC 60.611 54.545 20.97 13.51 35.18 3.85
97 98 2.297597 GCTACAGTGACTGACAAGACCT 59.702 50.000 20.97 0.00 35.18 3.85
98 99 3.506455 GCTACAGTGACTGACAAGACCTA 59.494 47.826 20.97 0.00 35.18 3.08
99 100 4.158764 GCTACAGTGACTGACAAGACCTAT 59.841 45.833 20.97 0.00 35.18 2.57
100 101 4.792521 ACAGTGACTGACAAGACCTATC 57.207 45.455 20.97 0.00 35.18 2.08
101 102 4.411927 ACAGTGACTGACAAGACCTATCT 58.588 43.478 20.97 0.00 34.07 1.98
102 103 4.835615 ACAGTGACTGACAAGACCTATCTT 59.164 41.667 20.97 0.00 39.25 2.40
112 113 4.851639 AAGACCTATCTTGCAGGTGAAT 57.148 40.909 0.00 0.00 46.60 2.57
113 114 5.957771 AAGACCTATCTTGCAGGTGAATA 57.042 39.130 0.00 0.00 46.60 1.75
114 115 6.506538 AAGACCTATCTTGCAGGTGAATAT 57.493 37.500 0.00 0.00 46.60 1.28
115 116 6.506538 AGACCTATCTTGCAGGTGAATATT 57.493 37.500 0.00 0.00 46.60 1.28
116 117 7.618019 AGACCTATCTTGCAGGTGAATATTA 57.382 36.000 0.00 0.00 46.60 0.98
117 118 8.034313 AGACCTATCTTGCAGGTGAATATTAA 57.966 34.615 0.00 0.00 46.60 1.40
118 119 8.664079 AGACCTATCTTGCAGGTGAATATTAAT 58.336 33.333 0.00 0.00 46.60 1.40
119 120 9.289782 GACCTATCTTGCAGGTGAATATTAATT 57.710 33.333 0.00 0.00 46.60 1.40
120 121 9.071276 ACCTATCTTGCAGGTGAATATTAATTG 57.929 33.333 0.00 0.00 44.89 2.32
121 122 8.025445 CCTATCTTGCAGGTGAATATTAATTGC 58.975 37.037 0.00 0.00 0.00 3.56
122 123 5.820131 TCTTGCAGGTGAATATTAATTGCG 58.180 37.500 0.00 0.00 33.03 4.85
123 124 5.356751 TCTTGCAGGTGAATATTAATTGCGT 59.643 36.000 0.00 0.00 33.03 5.24
124 125 5.574891 TGCAGGTGAATATTAATTGCGTT 57.425 34.783 0.00 0.00 33.03 4.84
125 126 5.960113 TGCAGGTGAATATTAATTGCGTTT 58.040 33.333 0.00 0.00 33.03 3.60
126 127 5.804473 TGCAGGTGAATATTAATTGCGTTTG 59.196 36.000 0.00 0.00 33.03 2.93
252 253 8.874156 TCATCAATGGAGTATTAGCTCTTACAT 58.126 33.333 0.00 0.00 35.89 2.29
274 275 3.508762 ACATAGACGTTAAAGGCAGACG 58.491 45.455 0.00 0.00 42.13 4.18
277 278 1.549170 AGACGTTAAAGGCAGACGGAT 59.451 47.619 0.00 0.00 40.82 4.18
287 288 1.576356 GCAGACGGATTGCTAAGAGG 58.424 55.000 1.46 0.00 38.51 3.69
377 378 6.706055 TTGTTAATCGTGCTTCTCAGTAAG 57.294 37.500 0.00 0.00 0.00 2.34
451 452 5.569355 TGTATTCATTGGTCTGGTTGATGT 58.431 37.500 0.00 0.00 0.00 3.06
458 459 3.625853 TGGTCTGGTTGATGTGTTTTCA 58.374 40.909 0.00 0.00 0.00 2.69
462 463 6.072008 TGGTCTGGTTGATGTGTTTTCATATG 60.072 38.462 0.00 0.00 31.92 1.78
529 530 5.678919 GCGAGAAAGCTTTACAAATAGATGC 59.321 40.000 12.68 2.70 0.00 3.91
550 551 4.282957 TGCTGATGAGCTTATAAGGAGAGG 59.717 45.833 14.28 0.00 46.39 3.69
557 558 3.326297 AGCTTATAAGGAGAGGCCATCAC 59.674 47.826 14.28 0.00 40.02 3.06
726 727 5.402270 CCTGTTGTTTTGTAGCAATGCTTAC 59.598 40.000 14.85 10.21 40.44 2.34
741 742 3.006940 TGCTTACGCTTACTGGGAATTG 58.993 45.455 0.00 0.00 36.97 2.32
778 779 3.935828 GTCTGAACCTTGCTAATCCTGAC 59.064 47.826 0.00 0.00 0.00 3.51
781 782 3.512329 TGAACCTTGCTAATCCTGACGTA 59.488 43.478 0.00 0.00 0.00 3.57
791 792 6.757010 TGCTAATCCTGACGTATCTTCTTTTC 59.243 38.462 0.00 0.00 0.00 2.29
967 968 5.417811 CACTAGTGAGATTGAGCAGACAAT 58.582 41.667 18.45 0.00 42.19 2.71
968 969 5.873712 CACTAGTGAGATTGAGCAGACAATT 59.126 40.000 18.45 0.00 40.03 2.32
1027 1033 0.386113 GCTCGATTTACTCCTCGGCT 59.614 55.000 0.00 0.00 35.64 5.52
1036 1042 8.579006 TCGATTTACTCCTCGGCTAAATTTATA 58.421 33.333 0.00 0.00 35.64 0.98
1076 1082 5.355596 TGTTGGTATTTTTGCAGAACAAGG 58.644 37.500 0.00 0.00 40.06 3.61
1113 1119 2.186903 CGTCCAGGGTATTGCGCT 59.813 61.111 9.73 0.00 41.40 5.92
1114 1120 1.883084 CGTCCAGGGTATTGCGCTC 60.883 63.158 9.73 0.00 38.41 5.03
1154 1160 3.708403 TGGAGGATGGTGATGCATATC 57.292 47.619 0.00 0.00 0.00 1.63
1167 1173 8.377799 TGGTGATGCATATCATTGTACTAATCT 58.622 33.333 0.00 0.00 44.62 2.40
1168 1174 8.663025 GGTGATGCATATCATTGTACTAATCTG 58.337 37.037 0.00 0.00 44.62 2.90
1266 1272 6.030228 GGTTTTGTACTGATATCTTTGCTGC 58.970 40.000 3.98 0.00 0.00 5.25
1311 1317 1.725641 CAGCTGATGGAAACGCTACA 58.274 50.000 8.42 0.00 0.00 2.74
1386 1392 2.373169 TGATCAGGTGCTGGAGAGTTTT 59.627 45.455 0.00 0.00 31.51 2.43
1409 1415 0.308993 GCAAATAGCTCCGTCATGCC 59.691 55.000 0.00 0.00 41.15 4.40
1423 1429 3.313249 CGTCATGCCAGCAAAGATAATGA 59.687 43.478 0.00 0.00 0.00 2.57
1458 1464 7.599245 GGAAGGAAATATATTGTAGAGGTCACG 59.401 40.741 0.00 0.00 0.00 4.35
1495 1501 1.414550 GTAGGAGAGACAAGGATGGGC 59.585 57.143 0.00 0.00 0.00 5.36
1505 1511 0.033699 AAGGATGGGCTGAGCTTTCC 60.034 55.000 3.72 8.48 0.00 3.13
1529 1535 2.288152 TGCTCAAATTTTTCACGGAGGC 60.288 45.455 0.00 0.00 0.00 4.70
1535 1541 1.770294 TTTTTCACGGAGGCTGGTTT 58.230 45.000 0.00 0.00 0.00 3.27
1536 1542 1.770294 TTTTCACGGAGGCTGGTTTT 58.230 45.000 0.00 0.00 0.00 2.43
1545 1551 3.014623 GGAGGCTGGTTTTATGTACCAC 58.985 50.000 0.00 0.00 40.65 4.16
1589 1595 1.450134 CCAGTAGCGCTCCAATGCA 60.450 57.895 16.34 0.00 0.00 3.96
1668 1674 7.976135 AGTATTCAGCTGTATTCATTCATCC 57.024 36.000 14.67 0.00 0.00 3.51
1680 1686 4.794248 TCATTCATCCGTAAGATTTGCG 57.206 40.909 0.00 0.00 43.02 4.85
1681 1687 3.002246 TCATTCATCCGTAAGATTTGCGC 59.998 43.478 0.00 0.00 43.02 6.09
1791 1798 2.910199 TGCTTCATGATACTGCTGGTC 58.090 47.619 0.00 0.00 0.00 4.02
1810 1817 6.409810 GCTGGTCCTTTATTTCTTCTCCCTAT 60.410 42.308 0.00 0.00 0.00 2.57
1825 1832 9.672673 TCTTCTCCCTATCTGTTTATTTTTCTG 57.327 33.333 0.00 0.00 0.00 3.02
1854 1861 8.314751 AGTCCATATATTGATCTTTTCTACGGG 58.685 37.037 0.00 0.00 0.00 5.28
1935 1943 3.576648 GACACTTCCTCACTTCCTAACG 58.423 50.000 0.00 0.00 0.00 3.18
1951 1959 1.073177 AACGTGCGCACCAGTAATAC 58.927 50.000 33.23 6.88 0.00 1.89
2009 2017 5.240623 GGACATGTTGGTGAGTTTGAACATA 59.759 40.000 0.00 0.00 37.01 2.29
2010 2018 6.238897 GGACATGTTGGTGAGTTTGAACATAA 60.239 38.462 0.00 0.00 37.01 1.90
2019 2027 7.925483 TGGTGAGTTTGAACATAATTTCCTTTG 59.075 33.333 0.00 0.00 0.00 2.77
2258 2271 8.905702 GCTTACAATGTATTCTTGTTCTTGTTG 58.094 33.333 0.00 0.00 37.89 3.33
2282 2295 2.153366 GGCACAACCTCAAAATGTGG 57.847 50.000 7.19 0.00 43.54 4.17
2292 2305 1.962807 TCAAAATGTGGGGTCTTGCTG 59.037 47.619 0.00 0.00 0.00 4.41
2293 2306 1.962807 CAAAATGTGGGGTCTTGCTGA 59.037 47.619 0.00 0.00 0.00 4.26
2333 2346 1.449353 GCCTCCAGGAGCCATACTG 59.551 63.158 11.57 0.00 37.10 2.74
2373 2386 2.990514 GCTTTTGTTGTTCGGTGTTGTT 59.009 40.909 0.00 0.00 0.00 2.83
2441 2454 5.754890 TGTTCTTCATGTCACCATATGATCG 59.245 40.000 3.65 0.00 40.28 3.69
2457 2470 5.998454 ATGATCGTATGCCTTTCTTTGAG 57.002 39.130 0.00 0.00 0.00 3.02
2485 2498 2.246719 ATAGATTGCGTTCCTGAGGC 57.753 50.000 0.00 0.00 39.55 4.70
2521 2534 2.151202 AGCAAACACAGTCCCATAACG 58.849 47.619 0.00 0.00 0.00 3.18
2567 2580 3.858135 AGACTAAGGTGAAGGAGACCAA 58.142 45.455 0.00 0.00 35.76 3.67
2622 2635 5.443185 TTTCTTTTTGAGTGAGCATCCTG 57.557 39.130 0.00 0.00 0.00 3.86
2661 2674 0.799534 GTATACGCGCAGGTCACGTT 60.800 55.000 5.73 0.00 40.99 3.99
2680 2693 3.370978 CGTTGGAGTAATGCAAAGTCGAT 59.629 43.478 0.00 0.00 0.00 3.59
2718 2731 1.354337 CGTTGATGGGAGCGACACAG 61.354 60.000 0.00 0.00 34.42 3.66
2738 2751 3.041211 AGCTGGACATAGGTATGCTTCA 58.959 45.455 0.00 0.00 37.19 3.02
2792 2805 9.787532 TTGTGAAATTCTTGTGAAAAGAGTAAG 57.212 29.630 0.00 0.00 35.63 2.34
2861 2874 1.762957 AGGGTGGACGATAAGTGATGG 59.237 52.381 0.00 0.00 0.00 3.51
2886 2899 1.358759 GTGGTTTGCAAGGTGGACG 59.641 57.895 0.00 0.00 0.00 4.79
2894 2907 0.531974 GCAAGGTGGACGACAAGTGA 60.532 55.000 0.00 0.00 0.00 3.41
2953 2966 1.327690 CGTGTTCCCTAGGCTAGGCA 61.328 60.000 31.36 21.94 44.86 4.75
2971 2984 7.044181 GCTAGGCATGCTTATATGTGAGAATA 58.956 38.462 18.92 0.00 0.00 1.75
3019 3032 5.773680 AGTGTCTTAGCCTCTGTAAACAGTA 59.226 40.000 9.81 0.00 44.12 2.74
3043 3056 3.055719 GCATCCGTGGTGGTGTGG 61.056 66.667 0.00 0.00 39.52 4.17
3099 3112 3.056891 CCTGTGTTTTGGAGTGTTGTTGT 60.057 43.478 0.00 0.00 0.00 3.32
3145 3158 9.471742 GTTTTGATGTGTTGTTGTATGAAAAAC 57.528 29.630 0.00 0.00 0.00 2.43
3200 3213 4.891168 TCAGTTACCATAGCCGACAGAATA 59.109 41.667 0.00 0.00 0.00 1.75
3231 3244 6.639671 TGCGCAAACATTTTATCCATTTAC 57.360 33.333 8.16 0.00 0.00 2.01
3252 3265 5.440234 ACAGCCATCACTACTACTATTCG 57.560 43.478 0.00 0.00 0.00 3.34
3644 3709 4.699522 AGTTTCCGTCGCTGGGGC 62.700 66.667 0.00 0.00 0.00 5.80
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
15 16 2.159382 GGAAAAGCATCCGAAACAGGA 58.841 47.619 0.00 0.00 45.54 3.86
16 17 1.885887 TGGAAAAGCATCCGAAACAGG 59.114 47.619 0.00 0.00 42.76 4.00
17 18 2.554032 AGTGGAAAAGCATCCGAAACAG 59.446 45.455 0.00 0.00 42.76 3.16
18 19 2.293122 CAGTGGAAAAGCATCCGAAACA 59.707 45.455 0.00 0.00 42.76 2.83
19 20 2.293399 ACAGTGGAAAAGCATCCGAAAC 59.707 45.455 0.00 0.00 42.76 2.78
20 21 2.582052 ACAGTGGAAAAGCATCCGAAA 58.418 42.857 0.00 0.00 42.76 3.46
21 22 2.270352 ACAGTGGAAAAGCATCCGAA 57.730 45.000 0.00 0.00 42.76 4.30
22 23 3.270027 CATACAGTGGAAAAGCATCCGA 58.730 45.455 0.00 0.00 42.76 4.55
23 24 2.223340 GCATACAGTGGAAAAGCATCCG 60.223 50.000 0.00 0.00 42.76 4.18
24 25 2.754552 TGCATACAGTGGAAAAGCATCC 59.245 45.455 0.00 0.00 40.10 3.51
25 26 4.644103 ATGCATACAGTGGAAAAGCATC 57.356 40.909 0.00 0.00 36.61 3.91
26 27 7.173907 GTCTATATGCATACAGTGGAAAAGCAT 59.826 37.037 8.99 15.07 42.98 3.79
27 28 6.483307 GTCTATATGCATACAGTGGAAAAGCA 59.517 38.462 8.99 3.36 34.78 3.91
28 29 6.708054 AGTCTATATGCATACAGTGGAAAAGC 59.292 38.462 8.99 0.00 0.00 3.51
29 30 8.668510 AAGTCTATATGCATACAGTGGAAAAG 57.331 34.615 8.99 0.00 0.00 2.27
30 31 7.438160 CGAAGTCTATATGCATACAGTGGAAAA 59.562 37.037 8.99 0.00 0.00 2.29
31 32 6.923508 CGAAGTCTATATGCATACAGTGGAAA 59.076 38.462 8.99 0.00 0.00 3.13
32 33 6.447162 CGAAGTCTATATGCATACAGTGGAA 58.553 40.000 8.99 0.00 0.00 3.53
33 34 5.564848 GCGAAGTCTATATGCATACAGTGGA 60.565 44.000 8.99 0.00 0.00 4.02
34 35 4.623167 GCGAAGTCTATATGCATACAGTGG 59.377 45.833 8.99 0.00 0.00 4.00
35 36 5.465051 AGCGAAGTCTATATGCATACAGTG 58.535 41.667 8.99 0.00 0.00 3.66
36 37 5.475220 AGAGCGAAGTCTATATGCATACAGT 59.525 40.000 8.99 0.00 0.00 3.55
37 38 5.948588 AGAGCGAAGTCTATATGCATACAG 58.051 41.667 8.99 7.18 0.00 2.74
38 39 5.966742 AGAGCGAAGTCTATATGCATACA 57.033 39.130 8.99 0.00 0.00 2.29
41 42 8.194104 CCTTAATAGAGCGAAGTCTATATGCAT 58.806 37.037 3.79 3.79 38.57 3.96
42 43 7.393515 TCCTTAATAGAGCGAAGTCTATATGCA 59.606 37.037 0.00 0.00 38.57 3.96
43 44 7.763356 TCCTTAATAGAGCGAAGTCTATATGC 58.237 38.462 3.61 0.00 38.57 3.14
49 50 8.452534 CGTTATATCCTTAATAGAGCGAAGTCT 58.547 37.037 0.00 0.00 37.80 3.24
50 51 7.697291 CCGTTATATCCTTAATAGAGCGAAGTC 59.303 40.741 0.00 0.00 37.80 3.01
51 52 7.536855 CCGTTATATCCTTAATAGAGCGAAGT 58.463 38.462 0.00 0.00 37.80 3.01
52 53 6.472808 GCCGTTATATCCTTAATAGAGCGAAG 59.527 42.308 0.00 0.00 37.80 3.79
53 54 6.152323 AGCCGTTATATCCTTAATAGAGCGAA 59.848 38.462 0.00 0.00 37.80 4.70
54 55 5.651139 AGCCGTTATATCCTTAATAGAGCGA 59.349 40.000 0.00 0.00 37.80 4.93
55 56 5.892568 AGCCGTTATATCCTTAATAGAGCG 58.107 41.667 0.00 0.00 36.08 5.03
56 57 7.769220 TGTAGCCGTTATATCCTTAATAGAGC 58.231 38.462 0.00 0.00 0.00 4.09
57 58 8.958506 ACTGTAGCCGTTATATCCTTAATAGAG 58.041 37.037 0.00 0.00 0.00 2.43
58 59 8.737175 CACTGTAGCCGTTATATCCTTAATAGA 58.263 37.037 0.00 0.00 0.00 1.98
59 60 8.737175 TCACTGTAGCCGTTATATCCTTAATAG 58.263 37.037 0.00 0.00 0.00 1.73
60 61 8.517878 GTCACTGTAGCCGTTATATCCTTAATA 58.482 37.037 0.00 0.00 0.00 0.98
61 62 7.232941 AGTCACTGTAGCCGTTATATCCTTAAT 59.767 37.037 0.00 0.00 0.00 1.40
62 63 6.548622 AGTCACTGTAGCCGTTATATCCTTAA 59.451 38.462 0.00 0.00 0.00 1.85
63 64 6.016527 CAGTCACTGTAGCCGTTATATCCTTA 60.017 42.308 0.00 0.00 0.00 2.69
64 65 4.894114 AGTCACTGTAGCCGTTATATCCTT 59.106 41.667 0.00 0.00 0.00 3.36
65 66 4.278669 CAGTCACTGTAGCCGTTATATCCT 59.721 45.833 0.00 0.00 0.00 3.24
66 67 4.277672 TCAGTCACTGTAGCCGTTATATCC 59.722 45.833 4.28 0.00 32.61 2.59
67 68 5.213675 GTCAGTCACTGTAGCCGTTATATC 58.786 45.833 4.28 0.00 32.61 1.63
68 69 4.643334 TGTCAGTCACTGTAGCCGTTATAT 59.357 41.667 4.28 0.00 32.61 0.86
69 70 4.011698 TGTCAGTCACTGTAGCCGTTATA 58.988 43.478 4.28 0.00 32.61 0.98
70 71 2.823747 TGTCAGTCACTGTAGCCGTTAT 59.176 45.455 4.28 0.00 32.61 1.89
71 72 2.232399 TGTCAGTCACTGTAGCCGTTA 58.768 47.619 4.28 0.00 32.61 3.18
72 73 1.037493 TGTCAGTCACTGTAGCCGTT 58.963 50.000 4.28 0.00 32.61 4.44
73 74 1.000163 CTTGTCAGTCACTGTAGCCGT 60.000 52.381 4.28 0.00 32.61 5.68
74 75 1.269723 TCTTGTCAGTCACTGTAGCCG 59.730 52.381 4.28 0.00 32.61 5.52
75 76 2.610727 GGTCTTGTCAGTCACTGTAGCC 60.611 54.545 4.28 4.02 32.61 3.93
76 77 2.297597 AGGTCTTGTCAGTCACTGTAGC 59.702 50.000 4.28 0.00 32.61 3.58
77 78 5.650266 AGATAGGTCTTGTCAGTCACTGTAG 59.350 44.000 4.28 1.58 32.61 2.74
78 79 5.571285 AGATAGGTCTTGTCAGTCACTGTA 58.429 41.667 4.28 0.00 32.61 2.74
79 80 4.411927 AGATAGGTCTTGTCAGTCACTGT 58.588 43.478 4.28 0.00 32.61 3.55
80 81 5.398603 AAGATAGGTCTTGTCAGTCACTG 57.601 43.478 0.00 0.00 42.97 3.66
91 92 4.851639 ATTCACCTGCAAGATAGGTCTT 57.148 40.909 0.00 0.00 45.19 3.01
92 93 6.506538 AATATTCACCTGCAAGATAGGTCT 57.493 37.500 0.00 0.00 45.19 3.85
93 94 8.854614 ATTAATATTCACCTGCAAGATAGGTC 57.145 34.615 0.00 0.00 45.19 3.85
95 96 8.025445 GCAATTAATATTCACCTGCAAGATAGG 58.975 37.037 0.00 0.00 41.22 2.57
96 97 7.747799 CGCAATTAATATTCACCTGCAAGATAG 59.252 37.037 6.79 0.00 34.07 2.08
97 98 7.228507 ACGCAATTAATATTCACCTGCAAGATA 59.771 33.333 6.79 0.00 34.07 1.98
98 99 6.039717 ACGCAATTAATATTCACCTGCAAGAT 59.960 34.615 6.79 0.00 34.07 2.40
99 100 5.356751 ACGCAATTAATATTCACCTGCAAGA 59.643 36.000 6.79 0.00 34.07 3.02
100 101 5.581605 ACGCAATTAATATTCACCTGCAAG 58.418 37.500 6.79 0.00 0.00 4.01
101 102 5.574891 ACGCAATTAATATTCACCTGCAA 57.425 34.783 6.79 0.00 0.00 4.08
102 103 5.574891 AACGCAATTAATATTCACCTGCA 57.425 34.783 6.79 0.00 0.00 4.41
103 104 5.804979 ACAAACGCAATTAATATTCACCTGC 59.195 36.000 0.00 0.00 0.00 4.85
104 105 7.026562 TGACAAACGCAATTAATATTCACCTG 58.973 34.615 0.00 0.00 0.00 4.00
105 106 7.151999 TGACAAACGCAATTAATATTCACCT 57.848 32.000 0.00 0.00 0.00 4.00
106 107 7.985634 ATGACAAACGCAATTAATATTCACC 57.014 32.000 0.00 0.00 0.00 4.02
115 116 9.509855 GGACAATATAAATGACAAACGCAATTA 57.490 29.630 0.00 0.00 0.00 1.40
116 117 8.031864 TGGACAATATAAATGACAAACGCAATT 58.968 29.630 0.00 0.00 0.00 2.32
117 118 7.487829 GTGGACAATATAAATGACAAACGCAAT 59.512 33.333 0.00 0.00 0.00 3.56
118 119 6.804295 GTGGACAATATAAATGACAAACGCAA 59.196 34.615 0.00 0.00 0.00 4.85
119 120 6.150307 AGTGGACAATATAAATGACAAACGCA 59.850 34.615 0.00 0.00 0.00 5.24
120 121 6.551736 AGTGGACAATATAAATGACAAACGC 58.448 36.000 0.00 0.00 0.00 4.84
121 122 8.233868 TCAAGTGGACAATATAAATGACAAACG 58.766 33.333 0.00 0.00 0.00 3.60
170 171 6.347725 GCAACACCATTAAAAACACAACACAA 60.348 34.615 0.00 0.00 0.00 3.33
252 253 4.439153 CCGTCTGCCTTTAACGTCTATGTA 60.439 45.833 0.00 0.00 34.71 2.29
274 275 7.964604 ATACGTAAATTCCTCTTAGCAATCC 57.035 36.000 0.00 0.00 0.00 3.01
277 278 9.745880 CTCTTATACGTAAATTCCTCTTAGCAA 57.254 33.333 0.00 0.00 0.00 3.91
287 288 6.267242 ACCTCCCCTCTCTTATACGTAAATTC 59.733 42.308 0.00 0.00 0.00 2.17
301 302 1.481363 CGGAAACTAACCTCCCCTCTC 59.519 57.143 0.00 0.00 0.00 3.20
486 487 4.575885 TCGCTCTACAAAGCCAAAATAGT 58.424 39.130 0.00 0.00 39.17 2.12
529 530 4.322650 GGCCTCTCCTTATAAGCTCATCAG 60.323 50.000 6.99 0.00 0.00 2.90
550 551 3.206150 ACAATGATAGGTTCGTGATGGC 58.794 45.455 0.00 0.00 0.00 4.40
557 558 6.293081 CCATAGCAAGAACAATGATAGGTTCG 60.293 42.308 0.00 0.00 46.09 3.95
653 654 6.062258 TGCTTAGCAGATAGTAAACCCTTT 57.938 37.500 1.39 0.00 33.32 3.11
697 698 6.704819 CATTGCTACAAAACAACAGGAAAAC 58.295 36.000 0.00 0.00 0.00 2.43
726 727 0.451783 GCCACAATTCCCAGTAAGCG 59.548 55.000 0.00 0.00 0.00 4.68
741 742 4.429108 GTTCAGACAGATCTTAGAGCCAC 58.571 47.826 0.00 0.00 30.42 5.01
778 779 5.968387 ACCTATTGCGAAAAGAAGATACG 57.032 39.130 0.00 0.00 0.00 3.06
949 950 5.152097 CAACAATTGTCTGCTCAATCTCAC 58.848 41.667 12.39 0.00 37.09 3.51
992 993 7.750229 AAATCGAGCATTACCATGATAACAT 57.250 32.000 0.00 0.00 37.19 2.71
1058 1064 7.595130 CCTAAAGACCTTGTTCTGCAAAAATAC 59.405 37.037 0.00 0.00 36.53 1.89
1097 1103 0.392461 TTGAGCGCAATACCCTGGAC 60.392 55.000 11.47 0.00 0.00 4.02
1113 1119 0.550914 AGCCTTCCAAGTGTGGTTGA 59.449 50.000 0.00 0.00 46.11 3.18
1114 1120 2.270352 TAGCCTTCCAAGTGTGGTTG 57.730 50.000 0.00 0.00 46.11 3.77
1167 1173 4.460263 AGCAGTCCTGTTAACACAATTCA 58.540 39.130 3.59 0.00 30.36 2.57
1168 1174 5.390991 GCTAGCAGTCCTGTTAACACAATTC 60.391 44.000 10.63 0.00 30.36 2.17
1227 1233 8.141268 CAGTACAAAACCTCATTACAACCAAAT 58.859 33.333 0.00 0.00 0.00 2.32
1266 1272 7.085116 CGATTATAGGAAGCTTGTACCTACAG 58.915 42.308 13.17 2.51 38.79 2.74
1311 1317 4.714308 TCACCAAAGAAAACCATTTCCACT 59.286 37.500 0.00 0.00 44.96 4.00
1391 1397 1.600957 CTGGCATGACGGAGCTATTTG 59.399 52.381 0.00 0.00 0.00 2.32
1409 1415 5.163683 CCAACCAGAGTCATTATCTTTGCTG 60.164 44.000 0.00 0.00 0.00 4.41
1423 1429 7.643123 ACAATATATTTCCTTCCAACCAGAGT 58.357 34.615 0.00 0.00 0.00 3.24
1458 1464 6.698380 TCTCCTACAAGAATACTTTGACACC 58.302 40.000 0.00 0.00 33.70 4.16
1505 1511 3.963665 TCCGTGAAAAATTTGAGCACTG 58.036 40.909 13.19 8.89 0.00 3.66
1515 1521 1.995376 AACCAGCCTCCGTGAAAAAT 58.005 45.000 0.00 0.00 0.00 1.82
1535 1541 6.003234 CCACAACAAAATCGTGGTACATAA 57.997 37.500 0.00 0.00 44.27 1.90
1536 1542 5.614923 CCACAACAAAATCGTGGTACATA 57.385 39.130 0.00 0.00 44.27 2.29
1545 1551 1.269517 CCCACACCCACAACAAAATCG 60.270 52.381 0.00 0.00 0.00 3.34
1655 1661 6.792250 CGCAAATCTTACGGATGAATGAATAC 59.208 38.462 4.46 0.00 34.45 1.89
1668 1674 0.652592 CCTCCTGCGCAAATCTTACG 59.347 55.000 13.05 0.00 0.00 3.18
1680 1686 1.473434 GCTGGTATGTACACCTCCTGC 60.473 57.143 20.06 20.06 39.50 4.85
1681 1687 1.139058 GGCTGGTATGTACACCTCCTG 59.861 57.143 0.00 6.52 39.50 3.86
1773 1780 3.834489 AGGACCAGCAGTATCATGAAG 57.166 47.619 0.00 0.00 0.00 3.02
1831 1838 6.316390 GCCCCGTAGAAAAGATCAATATATGG 59.684 42.308 0.00 0.00 0.00 2.74
1841 1848 0.906775 TTCCGCCCCGTAGAAAAGAT 59.093 50.000 0.00 0.00 0.00 2.40
1848 1855 1.309499 TGCATTTTTCCGCCCCGTAG 61.309 55.000 0.00 0.00 0.00 3.51
1854 1861 3.119495 ACTGTATTCTGCATTTTTCCGCC 60.119 43.478 0.00 0.00 0.00 6.13
1929 1937 0.668096 TTACTGGTGCGCACGTTAGG 60.668 55.000 32.35 21.09 0.00 2.69
1935 1943 1.927174 CTCAGTATTACTGGTGCGCAC 59.073 52.381 32.15 32.15 45.94 5.34
2009 2017 5.488262 AGCACCATAAAGCAAAGGAAATT 57.512 34.783 0.00 0.00 0.00 1.82
2010 2018 5.221702 ACAAGCACCATAAAGCAAAGGAAAT 60.222 36.000 0.00 0.00 0.00 2.17
2019 2027 0.108662 GGCCACAAGCACCATAAAGC 60.109 55.000 0.00 0.00 46.50 3.51
2102 2112 7.769220 AGTAAGATTTGGATTCTGCATTTCAG 58.231 34.615 0.00 0.00 44.21 3.02
2103 2113 7.707624 AGTAAGATTTGGATTCTGCATTTCA 57.292 32.000 0.00 0.00 0.00 2.69
2292 2305 4.034510 CGTATGAATGCCTTGAGGAAAGTC 59.965 45.833 0.06 0.00 37.39 3.01
2293 2306 3.941483 CGTATGAATGCCTTGAGGAAAGT 59.059 43.478 0.06 0.00 37.39 2.66
2333 2346 9.923143 ACAAAAGCAAATAGGAATAAAGTAACC 57.077 29.630 0.00 0.00 0.00 2.85
2402 2415 9.017509 ACATGAAGAACACAACATATGAAAGAT 57.982 29.630 10.38 0.00 0.00 2.40
2403 2416 8.394971 ACATGAAGAACACAACATATGAAAGA 57.605 30.769 10.38 0.00 0.00 2.52
2404 2417 8.291740 TGACATGAAGAACACAACATATGAAAG 58.708 33.333 10.38 1.05 0.00 2.62
2405 2418 8.075574 GTGACATGAAGAACACAACATATGAAA 58.924 33.333 10.38 0.00 34.05 2.69
2441 2454 6.739112 ACAAAGTTCTCAAAGAAAGGCATAC 58.261 36.000 0.00 0.00 35.75 2.39
2457 2470 6.312918 TCAGGAACGCAATCTATACAAAGTTC 59.687 38.462 0.00 0.00 36.84 3.01
2510 2523 2.741878 GCAGTGCATACGTTATGGGACT 60.742 50.000 11.09 0.00 36.68 3.85
2567 2580 7.396055 TGCAATAGTAGCCAAACCTTTTATTCT 59.604 33.333 0.00 0.00 0.00 2.40
2622 2635 9.350357 CGTATACCATAACATCACCTGTATTAC 57.650 37.037 0.00 0.00 36.98 1.89
2635 2648 1.409790 ACCTGCGCGTATACCATAACA 59.590 47.619 8.43 0.00 0.00 2.41
2661 2674 4.944962 CAATCGACTTTGCATTACTCCA 57.055 40.909 0.00 0.00 0.00 3.86
2680 2693 6.556212 TCAACGAACAAGTTTTTAGATGCAA 58.444 32.000 0.00 0.00 30.96 4.08
2688 2701 4.736464 GCTCCCATCAACGAACAAGTTTTT 60.736 41.667 0.00 0.00 30.96 1.94
2689 2702 3.243401 GCTCCCATCAACGAACAAGTTTT 60.243 43.478 0.00 0.00 30.96 2.43
2718 2731 3.397482 CTGAAGCATACCTATGTCCAGC 58.603 50.000 0.00 0.00 36.11 4.85
2753 2766 9.787532 CAAGAATTTCACAAGAAAACAGTAAGA 57.212 29.630 0.00 0.00 46.06 2.10
2839 2852 3.386726 CCATCACTTATCGTCCACCCTAA 59.613 47.826 0.00 0.00 0.00 2.69
2861 2874 1.662044 CTTGCAAACCACCTGCTCC 59.338 57.895 0.00 0.00 40.59 4.70
2886 2899 0.807496 GCCTGCTTCCATCACTTGTC 59.193 55.000 0.00 0.00 0.00 3.18
2894 2907 2.299326 AGAAAACAGCCTGCTTCCAT 57.701 45.000 0.00 0.00 0.00 3.41
2971 2984 2.745152 GCACCGCCACTACATAAATCCT 60.745 50.000 0.00 0.00 0.00 3.24
3019 3032 0.677731 CCACCACGGATGCAACAGAT 60.678 55.000 0.30 0.00 36.56 2.90
3099 3112 3.353557 ACACTGGCTTACTCGTCTCATA 58.646 45.455 0.00 0.00 0.00 2.15
3163 3176 4.164796 TGGTAACTGACTAGAGGGATACGA 59.835 45.833 0.00 0.00 37.61 3.43
3200 3213 2.818130 AATGTTTGCGCAATGTTCCT 57.182 40.000 25.64 3.88 0.00 3.36
3231 3244 4.022762 AGCGAATAGTAGTAGTGATGGCTG 60.023 45.833 0.00 0.00 0.00 4.85
3621 3686 1.664965 AGCGACGGAAACTGAGTGC 60.665 57.895 0.00 0.00 0.00 4.40
3622 3687 1.284982 CCAGCGACGGAAACTGAGTG 61.285 60.000 0.00 0.00 33.10 3.51
3623 3688 1.006102 CCAGCGACGGAAACTGAGT 60.006 57.895 0.00 0.00 33.10 3.41
3624 3689 1.738099 CCCAGCGACGGAAACTGAG 60.738 63.158 0.00 0.00 33.10 3.35
3625 3690 2.342279 CCCAGCGACGGAAACTGA 59.658 61.111 0.00 0.00 33.10 3.41
3626 3691 2.742372 CCCCAGCGACGGAAACTG 60.742 66.667 0.00 0.00 0.00 3.16
3644 3709 0.172803 CTAGGACCCGAACACCGAAG 59.827 60.000 0.00 0.00 41.76 3.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.