Multiple sequence alignment - TraesCS5D01G472200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G472200 chr5D 100.000 3990 0 0 1 3990 512765789 512761800 0.000000e+00 7369
1 TraesCS5D01G472200 chr5D 92.074 921 68 3 2108 3024 511957230 511958149 0.000000e+00 1291
2 TraesCS5D01G472200 chr5D 84.814 619 63 20 648 1260 511956110 511956703 9.550000e-166 593
3 TraesCS5D01G472200 chr5D 85.857 502 54 5 2200 2684 511973036 511973537 5.910000e-143 518
4 TraesCS5D01G472200 chr5D 86.219 283 38 1 977 1259 511972128 511972409 5.010000e-79 305
5 TraesCS5D01G472200 chr5D 79.070 430 84 4 3130 3557 465903022 465903447 1.400000e-74 291
6 TraesCS5D01G472200 chr5D 89.610 154 16 0 3556 3709 324368858 324369011 3.150000e-46 196
7 TraesCS5D01G472200 chr5D 89.720 107 10 1 3881 3987 170234151 170234256 6.960000e-28 135
8 TraesCS5D01G472200 chr5B 89.267 1733 110 25 1834 3558 643651902 643650238 0.000000e+00 2100
9 TraesCS5D01G472200 chr5B 90.460 1457 93 29 176 1613 643653334 643651905 0.000000e+00 1879
10 TraesCS5D01G472200 chr5B 91.796 963 71 7 2076 3035 642993065 642994022 0.000000e+00 1334
11 TraesCS5D01G472200 chr5B 85.738 610 53 16 665 1260 642991962 642992551 7.330000e-172 614
12 TraesCS5D01G472200 chr5B 88.785 428 35 8 144 563 643653770 643653348 2.750000e-141 512
13 TraesCS5D01G472200 chr5B 82.567 413 71 1 3145 3557 496150384 496150795 2.930000e-96 363
14 TraesCS5D01G472200 chr5B 85.993 307 26 6 3556 3849 643650195 643649893 2.990000e-81 313
15 TraesCS5D01G472200 chr5A 89.398 1660 106 36 1 1607 640927681 640926039 0.000000e+00 2026
16 TraesCS5D01G472200 chr5A 96.791 935 28 2 2151 3083 640925779 640924845 0.000000e+00 1559
17 TraesCS5D01G472200 chr5A 90.530 982 81 9 2119 3091 640371094 640372072 0.000000e+00 1288
18 TraesCS5D01G472200 chr5A 86.111 720 69 15 3132 3837 640910006 640909304 0.000000e+00 747
19 TraesCS5D01G472200 chr5A 85.596 604 58 18 665 1260 640370249 640370831 1.230000e-169 606
20 TraesCS5D01G472200 chr5A 91.408 419 36 0 2585 3003 640307768 640308186 3.460000e-160 575
21 TraesCS5D01G472200 chr5A 84.962 399 60 0 2610 3008 640354021 640354419 4.800000e-109 405
22 TraesCS5D01G472200 chr5A 89.723 253 6 4 1834 2086 640926033 640925801 5.010000e-79 305
23 TraesCS5D01G472200 chr5A 84.674 261 40 0 999 1259 640318615 640318875 1.100000e-65 261
24 TraesCS5D01G472200 chr5A 88.298 188 22 0 1072 1259 640390589 640390776 4.010000e-55 226
25 TraesCS5D01G472200 chr3D 86.490 718 85 6 2284 2991 601626125 601626840 0.000000e+00 778
26 TraesCS5D01G472200 chr3D 89.032 155 14 2 3556 3709 47748202 47748050 5.260000e-44 189
27 TraesCS5D01G472200 chr3D 88.462 156 18 0 3554 3709 62790110 62789955 5.260000e-44 189
28 TraesCS5D01G472200 chr2D 83.373 415 69 0 3143 3557 131775655 131775241 6.260000e-103 385
29 TraesCS5D01G472200 chr2D 89.189 111 11 1 3880 3990 303523095 303522986 1.930000e-28 137
30 TraesCS5D01G472200 chr2D 89.091 110 12 0 3881 3990 603882336 603882227 1.930000e-28 137
31 TraesCS5D01G472200 chr2B 84.985 333 50 0 3159 3491 548181 547849 4.940000e-89 339
32 TraesCS5D01G472200 chr1D 80.815 417 80 0 3141 3557 444844588 444845004 1.070000e-85 327
33 TraesCS5D01G472200 chr1D 86.385 213 25 4 1611 1821 194821027 194821237 3.100000e-56 230
34 TraesCS5D01G472200 chr4A 80.235 425 83 1 3134 3557 645686285 645686709 6.430000e-83 318
35 TraesCS5D01G472200 chr1B 79.529 425 83 2 3134 3557 527837408 527837829 2.330000e-77 300
36 TraesCS5D01G472200 chr1B 89.720 107 11 0 3881 3987 106674947 106675053 1.930000e-28 137
37 TraesCS5D01G472200 chr4B 83.607 305 50 0 3134 3438 494676422 494676726 1.810000e-73 287
38 TraesCS5D01G472200 chr1A 80.980 347 63 1 3143 3489 315262161 315262504 5.080000e-69 272
39 TraesCS5D01G472200 chr1A 85.841 226 27 5 1611 1834 242837472 242837250 6.670000e-58 235
40 TraesCS5D01G472200 chr1A 89.815 108 10 1 3881 3987 255651946 255652053 1.930000e-28 137
41 TraesCS5D01G472200 chr2A 81.761 318 52 2 3181 3493 668082725 668082409 1.100000e-65 261
42 TraesCS5D01G472200 chr2A 89.677 155 15 1 3556 3709 2742216 2742370 3.150000e-46 196
43 TraesCS5D01G472200 chr2A 89.720 107 11 0 3881 3987 483514622 483514728 1.930000e-28 137
44 TraesCS5D01G472200 chr6D 76.526 426 91 6 3134 3555 5482149 5482569 1.440000e-54 224
45 TraesCS5D01G472200 chr7D 83.945 218 29 4 1609 1821 571797532 571797316 1.880000e-48 204
46 TraesCS5D01G472200 chr3B 89.308 159 17 0 3560 3718 699267238 699267396 2.430000e-47 200
47 TraesCS5D01G472200 chr3B 89.091 110 12 0 3881 3990 494654377 494654268 1.930000e-28 137
48 TraesCS5D01G472200 chr3B 89.091 110 12 0 3881 3990 537646381 537646272 1.930000e-28 137
49 TraesCS5D01G472200 chr6A 89.610 154 16 0 3556 3709 497996767 497996920 3.150000e-46 196
50 TraesCS5D01G472200 chr6A 82.166 157 15 5 1609 1760 486820070 486819922 5.410000e-24 122
51 TraesCS5D01G472200 chr7A 89.404 151 16 0 3556 3706 729559488 729559638 1.460000e-44 191
52 TraesCS5D01G472200 chr7B 90.654 107 10 0 3881 3987 394225945 394225839 4.160000e-30 143


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G472200 chr5D 512761800 512765789 3989 True 7369.000000 7369 100.000000 1 3990 1 chr5D.!!$R1 3989
1 TraesCS5D01G472200 chr5D 511956110 511958149 2039 False 942.000000 1291 88.444000 648 3024 2 chr5D.!!$F4 2376
2 TraesCS5D01G472200 chr5D 511972128 511973537 1409 False 411.500000 518 86.038000 977 2684 2 chr5D.!!$F5 1707
3 TraesCS5D01G472200 chr5B 643649893 643653770 3877 True 1201.000000 2100 88.626250 144 3849 4 chr5B.!!$R1 3705
4 TraesCS5D01G472200 chr5B 642991962 642994022 2060 False 974.000000 1334 88.767000 665 3035 2 chr5B.!!$F2 2370
5 TraesCS5D01G472200 chr5A 640924845 640927681 2836 True 1296.666667 2026 91.970667 1 3083 3 chr5A.!!$R2 3082
6 TraesCS5D01G472200 chr5A 640370249 640372072 1823 False 947.000000 1288 88.063000 665 3091 2 chr5A.!!$F5 2426
7 TraesCS5D01G472200 chr5A 640909304 640910006 702 True 747.000000 747 86.111000 3132 3837 1 chr5A.!!$R1 705
8 TraesCS5D01G472200 chr3D 601626125 601626840 715 False 778.000000 778 86.490000 2284 2991 1 chr3D.!!$F1 707

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
207 216 0.184692 TTGATGACACCTTGGCACCA 59.815 50.0 0.00 0.00 38.83 4.17 F
219 254 0.534203 TGGCACCACTTCTCCGTTTC 60.534 55.0 0.00 0.00 0.00 2.78 F
1566 2165 0.536006 AACTGTGACTTGGCCAGCTC 60.536 55.0 5.11 5.06 0.00 4.09 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1761 2360 0.032515 TCGACCCTCCATCCAGCTTA 60.033 55.0 0.0 0.0 0.0 3.09 R
1764 2363 0.181350 AAATCGACCCTCCATCCAGC 59.819 55.0 0.0 0.0 0.0 4.85 R
3505 4408 0.392461 ACGTGTGCAGGTGTGTCTTT 60.392 50.0 0.0 0.0 0.0 2.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 6.238648 CCATACCCAAAATAGAATTCCACGAC 60.239 42.308 0.65 0.00 0.00 4.34
30 31 5.074115 ACCCAAAATAGAATTCCACGACAA 58.926 37.500 0.65 0.00 0.00 3.18
34 35 7.915397 CCCAAAATAGAATTCCACGACAAATAG 59.085 37.037 0.65 0.00 0.00 1.73
42 43 4.002906 TCCACGACAAATAGCAGAAACT 57.997 40.909 0.00 0.00 0.00 2.66
61 62 0.395311 TCCTACTAGAGTGCCACCCG 60.395 60.000 0.00 0.00 0.00 5.28
79 80 1.136721 CCGCACTAGAAAAACACGACG 60.137 52.381 0.00 0.00 0.00 5.12
83 84 2.283086 CACTAGAAAAACACGACGTGCA 59.717 45.455 27.11 3.84 36.98 4.57
115 116 3.552699 CCATGCAACACAGTGAACAAAAG 59.447 43.478 7.81 0.00 0.00 2.27
146 155 1.106944 AAACGCACCTGACCCCAAAG 61.107 55.000 0.00 0.00 0.00 2.77
200 209 1.609208 GCACCACTTGATGACACCTT 58.391 50.000 0.00 0.00 0.00 3.50
203 212 0.883833 CCACTTGATGACACCTTGGC 59.116 55.000 0.00 0.00 0.00 4.52
205 214 1.267806 CACTTGATGACACCTTGGCAC 59.732 52.381 0.00 0.00 38.83 5.01
207 216 0.184692 TTGATGACACCTTGGCACCA 59.815 50.000 0.00 0.00 38.83 4.17
219 254 0.534203 TGGCACCACTTCTCCGTTTC 60.534 55.000 0.00 0.00 0.00 2.78
223 258 2.031944 GCACCACTTCTCCGTTTCTTTC 60.032 50.000 0.00 0.00 0.00 2.62
224 259 3.467803 CACCACTTCTCCGTTTCTTTCT 58.532 45.455 0.00 0.00 0.00 2.52
226 261 4.335594 CACCACTTCTCCGTTTCTTTCTTT 59.664 41.667 0.00 0.00 0.00 2.52
227 262 4.948004 ACCACTTCTCCGTTTCTTTCTTTT 59.052 37.500 0.00 0.00 0.00 2.27
228 263 5.417894 ACCACTTCTCCGTTTCTTTCTTTTT 59.582 36.000 0.00 0.00 0.00 1.94
253 288 2.925563 CCTTTTTGCGCAATTCATCCTC 59.074 45.455 25.64 0.00 0.00 3.71
256 291 1.382522 TTGCGCAATTCATCCTCCTC 58.617 50.000 21.02 0.00 0.00 3.71
284 319 3.751518 GTTCATGTGGACACTTACCCTT 58.248 45.455 3.91 0.00 0.00 3.95
368 403 8.846943 AGAAAATCATACTACATGTGAACACA 57.153 30.769 9.11 10.04 46.44 3.72
517 960 8.971321 CCGATCATAAACAAAAATCATTCATCC 58.029 33.333 0.00 0.00 0.00 3.51
549 1002 8.454570 AAGATAATATCATGCATGTGAACACA 57.545 30.769 25.43 10.04 46.44 3.72
568 1021 3.057876 CACATACACCCGAGAGAGATAGC 60.058 52.174 0.00 0.00 0.00 2.97
573 1026 1.153353 CCCGAGAGAGATAGCGAGAC 58.847 60.000 0.00 0.00 0.00 3.36
627 1080 3.547247 GGAGACCCGTCCCATACC 58.453 66.667 0.00 0.00 0.00 2.73
628 1081 2.496291 GGAGACCCGTCCCATACCG 61.496 68.421 0.00 0.00 0.00 4.02
662 1116 4.737765 CGTCATTTTGGCCGTTTATTATGG 59.262 41.667 0.00 0.00 35.87 2.74
732 1187 1.881973 ACAAACGTACGCACTCCTCTA 59.118 47.619 16.72 0.00 0.00 2.43
760 1217 2.659291 GCGCTCTTTTTCAGTACACACG 60.659 50.000 0.00 0.00 0.00 4.49
826 1286 4.021229 TGTTTTATCTCTCTCCCGTGCTA 58.979 43.478 0.00 0.00 0.00 3.49
927 1397 5.008217 AGCGTGAGAAGATAAGCAGTAGTAG 59.992 44.000 0.00 0.00 0.00 2.57
928 1398 5.220892 GCGTGAGAAGATAAGCAGTAGTAGT 60.221 44.000 0.00 0.00 0.00 2.73
929 1399 6.018098 GCGTGAGAAGATAAGCAGTAGTAGTA 60.018 42.308 0.00 0.00 0.00 1.82
936 1406 6.580788 AGATAAGCAGTAGTAGTACGAGTGA 58.419 40.000 19.06 2.40 33.97 3.41
937 1407 4.943142 AAGCAGTAGTAGTACGAGTGAC 57.057 45.455 19.06 11.53 33.97 3.67
958 1436 1.808531 AACACACACCGCGGTAGCTA 61.809 55.000 33.70 0.00 42.32 3.32
984 1469 4.201744 CGGAGTAACAGTTGTTTGTTCGTT 60.202 41.667 2.46 0.00 41.31 3.85
985 1470 5.633927 GGAGTAACAGTTGTTTGTTCGTTT 58.366 37.500 2.46 0.00 41.31 3.60
1098 1587 2.662527 CCGGCGGTGTACGTGTTT 60.663 61.111 19.97 0.00 46.52 2.83
1101 1590 2.609759 GGCGGTGTACGTGTTTGGG 61.610 63.158 0.00 0.00 46.52 4.12
1317 1853 4.641989 CCGAGCTAGGTTAGTTAGGTTGTA 59.358 45.833 4.41 0.00 31.19 2.41
1370 1925 7.223260 ACGTAAATGATATAGGTTCGATCCA 57.777 36.000 14.83 1.70 0.00 3.41
1510 2105 5.879777 TCACTCACAATTTGACTTGAGAACA 59.120 36.000 17.58 3.59 38.19 3.18
1566 2165 0.536006 AACTGTGACTTGGCCAGCTC 60.536 55.000 5.11 5.06 0.00 4.09
1608 2207 4.754114 AGAGAACTTCAACTTCACTGCATC 59.246 41.667 0.00 0.00 0.00 3.91
1621 2220 2.358939 CTGCATCCAGTTCTTTTGGC 57.641 50.000 0.00 0.00 35.62 4.52
1622 2221 1.891150 CTGCATCCAGTTCTTTTGGCT 59.109 47.619 0.00 0.00 35.62 4.75
1623 2222 1.614903 TGCATCCAGTTCTTTTGGCTG 59.385 47.619 0.00 0.00 35.47 4.85
1624 2223 1.888512 GCATCCAGTTCTTTTGGCTGA 59.111 47.619 0.00 0.00 34.53 4.26
1625 2224 2.494870 GCATCCAGTTCTTTTGGCTGAT 59.505 45.455 0.00 0.00 34.53 2.90
1626 2225 3.056322 GCATCCAGTTCTTTTGGCTGATT 60.056 43.478 0.00 0.00 34.53 2.57
1627 2226 4.741342 CATCCAGTTCTTTTGGCTGATTC 58.259 43.478 0.00 0.00 34.53 2.52
1628 2227 4.104383 TCCAGTTCTTTTGGCTGATTCT 57.896 40.909 0.00 0.00 35.62 2.40
1629 2228 4.074970 TCCAGTTCTTTTGGCTGATTCTC 58.925 43.478 0.00 0.00 35.62 2.87
1630 2229 3.192212 CCAGTTCTTTTGGCTGATTCTCC 59.808 47.826 0.00 0.00 32.39 3.71
1631 2230 3.822735 CAGTTCTTTTGGCTGATTCTCCA 59.177 43.478 0.00 0.00 32.39 3.86
1632 2231 4.077822 AGTTCTTTTGGCTGATTCTCCAG 58.922 43.478 0.00 0.00 37.23 3.86
1633 2232 4.074970 GTTCTTTTGGCTGATTCTCCAGA 58.925 43.478 0.00 0.00 36.29 3.86
1634 2233 4.371624 TCTTTTGGCTGATTCTCCAGAA 57.628 40.909 0.00 0.00 36.29 3.02
1635 2234 4.927049 TCTTTTGGCTGATTCTCCAGAAT 58.073 39.130 1.22 1.22 46.54 2.40
1647 2246 4.662468 TCTCCAGAATCTTGAGAATCGG 57.338 45.455 11.12 0.00 38.61 4.18
1648 2247 3.386078 TCTCCAGAATCTTGAGAATCGGG 59.614 47.826 11.12 8.43 39.61 5.14
1649 2248 3.107601 TCCAGAATCTTGAGAATCGGGT 58.892 45.455 12.81 0.00 39.38 5.28
1650 2249 3.133003 TCCAGAATCTTGAGAATCGGGTC 59.867 47.826 12.81 0.00 39.38 4.46
1651 2250 3.133721 CCAGAATCTTGAGAATCGGGTCT 59.866 47.826 6.98 0.00 38.61 3.85
1652 2251 4.383552 CCAGAATCTTGAGAATCGGGTCTT 60.384 45.833 6.98 0.00 38.61 3.01
1653 2252 4.808364 CAGAATCTTGAGAATCGGGTCTTC 59.192 45.833 0.00 0.00 38.61 2.87
1654 2253 3.828875 ATCTTGAGAATCGGGTCTTCC 57.171 47.619 0.00 0.00 38.61 3.46
1666 2265 2.394930 GGTCTTCCCTCAGCTTCTTC 57.605 55.000 0.00 0.00 0.00 2.87
1667 2266 1.065782 GGTCTTCCCTCAGCTTCTTCC 60.066 57.143 0.00 0.00 0.00 3.46
1668 2267 1.625818 GTCTTCCCTCAGCTTCTTCCA 59.374 52.381 0.00 0.00 0.00 3.53
1669 2268 2.039084 GTCTTCCCTCAGCTTCTTCCAA 59.961 50.000 0.00 0.00 0.00 3.53
1670 2269 2.711009 TCTTCCCTCAGCTTCTTCCAAA 59.289 45.455 0.00 0.00 0.00 3.28
1671 2270 3.138283 TCTTCCCTCAGCTTCTTCCAAAA 59.862 43.478 0.00 0.00 0.00 2.44
1672 2271 3.814504 TCCCTCAGCTTCTTCCAAAAT 57.185 42.857 0.00 0.00 0.00 1.82
1673 2272 3.690460 TCCCTCAGCTTCTTCCAAAATC 58.310 45.455 0.00 0.00 0.00 2.17
1674 2273 3.331889 TCCCTCAGCTTCTTCCAAAATCT 59.668 43.478 0.00 0.00 0.00 2.40
1675 2274 4.085009 CCCTCAGCTTCTTCCAAAATCTT 58.915 43.478 0.00 0.00 0.00 2.40
1676 2275 4.082354 CCCTCAGCTTCTTCCAAAATCTTG 60.082 45.833 0.00 0.00 0.00 3.02
1677 2276 4.763793 CCTCAGCTTCTTCCAAAATCTTGA 59.236 41.667 0.00 0.00 34.14 3.02
1678 2277 5.242393 CCTCAGCTTCTTCCAAAATCTTGAA 59.758 40.000 0.00 0.00 34.14 2.69
1679 2278 6.076981 TCAGCTTCTTCCAAAATCTTGAAC 57.923 37.500 0.00 0.00 34.14 3.18
1680 2279 5.829924 TCAGCTTCTTCCAAAATCTTGAACT 59.170 36.000 0.00 0.00 34.14 3.01
1681 2280 6.016777 TCAGCTTCTTCCAAAATCTTGAACTC 60.017 38.462 0.00 0.00 34.14 3.01
1682 2281 5.829924 AGCTTCTTCCAAAATCTTGAACTCA 59.170 36.000 0.00 0.00 34.14 3.41
1683 2282 6.492772 AGCTTCTTCCAAAATCTTGAACTCAT 59.507 34.615 0.00 0.00 34.14 2.90
1684 2283 7.667219 AGCTTCTTCCAAAATCTTGAACTCATA 59.333 33.333 0.00 0.00 34.14 2.15
1685 2284 8.465201 GCTTCTTCCAAAATCTTGAACTCATAT 58.535 33.333 0.00 0.00 34.14 1.78
1760 2359 8.539117 AAAAATATAGGTTCAAGATTCTGGGG 57.461 34.615 0.00 0.00 0.00 4.96
1761 2360 6.848562 AATATAGGTTCAAGATTCTGGGGT 57.151 37.500 0.00 0.00 0.00 4.95
1762 2361 7.947782 AATATAGGTTCAAGATTCTGGGGTA 57.052 36.000 0.00 0.00 0.00 3.69
1763 2362 7.947782 ATATAGGTTCAAGATTCTGGGGTAA 57.052 36.000 0.00 0.00 0.00 2.85
1764 2363 4.576330 AGGTTCAAGATTCTGGGGTAAG 57.424 45.455 0.00 0.00 0.00 2.34
1765 2364 3.017442 GGTTCAAGATTCTGGGGTAAGC 58.983 50.000 0.00 0.00 0.00 3.09
1766 2365 3.308473 GGTTCAAGATTCTGGGGTAAGCT 60.308 47.826 0.00 0.00 0.00 3.74
1767 2366 3.634397 TCAAGATTCTGGGGTAAGCTG 57.366 47.619 0.00 0.00 0.00 4.24
1768 2367 2.239654 TCAAGATTCTGGGGTAAGCTGG 59.760 50.000 0.00 0.00 0.00 4.85
1769 2368 2.239654 CAAGATTCTGGGGTAAGCTGGA 59.760 50.000 0.00 0.00 0.00 3.86
1770 2369 2.781667 AGATTCTGGGGTAAGCTGGAT 58.218 47.619 0.00 0.00 0.00 3.41
1771 2370 2.441001 AGATTCTGGGGTAAGCTGGATG 59.559 50.000 0.00 0.00 0.00 3.51
1772 2371 0.918983 TTCTGGGGTAAGCTGGATGG 59.081 55.000 0.00 0.00 0.00 3.51
1773 2372 0.044092 TCTGGGGTAAGCTGGATGGA 59.956 55.000 0.00 0.00 0.00 3.41
1774 2373 0.471617 CTGGGGTAAGCTGGATGGAG 59.528 60.000 0.00 0.00 0.00 3.86
1775 2374 0.988145 TGGGGTAAGCTGGATGGAGG 60.988 60.000 0.00 0.00 0.00 4.30
1776 2375 1.709994 GGGGTAAGCTGGATGGAGGG 61.710 65.000 0.00 0.00 0.00 4.30
1777 2376 0.988678 GGGTAAGCTGGATGGAGGGT 60.989 60.000 0.00 0.00 0.00 4.34
1778 2377 0.470341 GGTAAGCTGGATGGAGGGTC 59.530 60.000 0.00 0.00 0.00 4.46
1779 2378 0.105039 GTAAGCTGGATGGAGGGTCG 59.895 60.000 0.00 0.00 0.00 4.79
1780 2379 0.032515 TAAGCTGGATGGAGGGTCGA 60.033 55.000 0.00 0.00 0.00 4.20
1781 2380 0.692419 AAGCTGGATGGAGGGTCGAT 60.692 55.000 0.00 0.00 0.00 3.59
1782 2381 0.692419 AGCTGGATGGAGGGTCGATT 60.692 55.000 0.00 0.00 0.00 3.34
1783 2382 0.181350 GCTGGATGGAGGGTCGATTT 59.819 55.000 0.00 0.00 0.00 2.17
1784 2383 1.408822 GCTGGATGGAGGGTCGATTTT 60.409 52.381 0.00 0.00 0.00 1.82
1785 2384 2.565841 CTGGATGGAGGGTCGATTTTC 58.434 52.381 0.00 0.00 0.00 2.29
1786 2385 1.912731 TGGATGGAGGGTCGATTTTCA 59.087 47.619 0.00 0.00 0.00 2.69
1787 2386 2.307392 TGGATGGAGGGTCGATTTTCAA 59.693 45.455 0.00 0.00 0.00 2.69
1788 2387 2.945668 GGATGGAGGGTCGATTTTCAAG 59.054 50.000 0.00 0.00 0.00 3.02
1789 2388 3.370527 GGATGGAGGGTCGATTTTCAAGA 60.371 47.826 0.00 0.00 0.00 3.02
1790 2389 4.455606 GATGGAGGGTCGATTTTCAAGAT 58.544 43.478 0.00 0.00 0.00 2.40
1791 2390 4.301072 TGGAGGGTCGATTTTCAAGATT 57.699 40.909 0.00 0.00 0.00 2.40
1792 2391 4.662278 TGGAGGGTCGATTTTCAAGATTT 58.338 39.130 0.00 0.00 0.00 2.17
1793 2392 5.076873 TGGAGGGTCGATTTTCAAGATTTT 58.923 37.500 0.00 0.00 0.00 1.82
1794 2393 5.048083 TGGAGGGTCGATTTTCAAGATTTTG 60.048 40.000 0.00 0.00 35.57 2.44
1795 2394 5.391312 AGGGTCGATTTTCAAGATTTTGG 57.609 39.130 0.00 0.00 34.97 3.28
1796 2395 4.220602 AGGGTCGATTTTCAAGATTTTGGG 59.779 41.667 0.00 0.00 34.97 4.12
1797 2396 4.219725 GGGTCGATTTTCAAGATTTTGGGA 59.780 41.667 0.00 0.00 34.97 4.37
1798 2397 5.402398 GGTCGATTTTCAAGATTTTGGGAG 58.598 41.667 0.00 0.00 34.97 4.30
1799 2398 5.183140 GGTCGATTTTCAAGATTTTGGGAGA 59.817 40.000 0.00 0.00 34.97 3.71
1800 2399 6.294508 GGTCGATTTTCAAGATTTTGGGAGAA 60.295 38.462 0.00 0.00 34.97 2.87
1801 2400 7.315890 GTCGATTTTCAAGATTTTGGGAGAAT 58.684 34.615 0.00 0.00 34.97 2.40
1802 2401 7.486232 GTCGATTTTCAAGATTTTGGGAGAATC 59.514 37.037 0.00 0.00 34.97 2.52
1803 2402 6.470235 CGATTTTCAAGATTTTGGGAGAATCG 59.530 38.462 10.34 10.34 38.29 3.34
1804 2403 5.643379 TTTCAAGATTTTGGGAGAATCGG 57.357 39.130 0.00 0.00 38.29 4.18
1805 2404 4.301072 TCAAGATTTTGGGAGAATCGGT 57.699 40.909 0.00 0.00 38.29 4.69
1806 2405 4.009675 TCAAGATTTTGGGAGAATCGGTG 58.990 43.478 0.00 0.00 38.29 4.94
1807 2406 4.009675 CAAGATTTTGGGAGAATCGGTGA 58.990 43.478 0.00 0.00 38.29 4.02
1808 2407 4.301072 AGATTTTGGGAGAATCGGTGAA 57.699 40.909 0.00 0.00 38.29 3.18
1809 2408 4.662278 AGATTTTGGGAGAATCGGTGAAA 58.338 39.130 0.00 0.00 38.29 2.69
1810 2409 5.076873 AGATTTTGGGAGAATCGGTGAAAA 58.923 37.500 0.00 0.00 38.29 2.29
1811 2410 4.846779 TTTTGGGAGAATCGGTGAAAAG 57.153 40.909 0.00 0.00 34.37 2.27
1812 2411 3.780804 TTGGGAGAATCGGTGAAAAGA 57.219 42.857 0.00 0.00 34.37 2.52
1813 2412 3.780804 TGGGAGAATCGGTGAAAAGAA 57.219 42.857 0.00 0.00 34.37 2.52
1814 2413 3.408634 TGGGAGAATCGGTGAAAAGAAC 58.591 45.455 0.00 0.00 34.37 3.01
1815 2414 3.072476 TGGGAGAATCGGTGAAAAGAACT 59.928 43.478 0.00 0.00 34.37 3.01
1816 2415 3.437049 GGGAGAATCGGTGAAAAGAACTG 59.563 47.826 0.00 0.00 34.37 3.16
1817 2416 3.437049 GGAGAATCGGTGAAAAGAACTGG 59.563 47.826 0.00 0.00 34.37 4.00
1818 2417 3.412386 AGAATCGGTGAAAAGAACTGGG 58.588 45.455 0.00 0.00 0.00 4.45
1819 2418 1.534729 ATCGGTGAAAAGAACTGGGC 58.465 50.000 0.00 0.00 0.00 5.36
1820 2419 0.536460 TCGGTGAAAAGAACTGGGCC 60.536 55.000 0.00 0.00 0.00 5.80
1821 2420 0.821711 CGGTGAAAAGAACTGGGCCA 60.822 55.000 5.85 5.85 0.00 5.36
1822 2421 1.632589 GGTGAAAAGAACTGGGCCAT 58.367 50.000 6.72 0.00 0.00 4.40
1823 2422 2.802719 GGTGAAAAGAACTGGGCCATA 58.197 47.619 6.72 0.00 0.00 2.74
1824 2423 2.755103 GGTGAAAAGAACTGGGCCATAG 59.245 50.000 6.72 4.64 0.00 2.23
1825 2424 3.421844 GTGAAAAGAACTGGGCCATAGT 58.578 45.455 6.72 5.42 0.00 2.12
1826 2425 4.566907 GGTGAAAAGAACTGGGCCATAGTA 60.567 45.833 6.72 0.00 0.00 1.82
1827 2426 4.636206 GTGAAAAGAACTGGGCCATAGTAG 59.364 45.833 6.72 0.00 0.00 2.57
1828 2427 4.288626 TGAAAAGAACTGGGCCATAGTAGT 59.711 41.667 6.72 0.00 0.00 2.73
1829 2428 5.486063 TGAAAAGAACTGGGCCATAGTAGTA 59.514 40.000 6.72 0.00 0.00 1.82
1830 2429 5.354842 AAAGAACTGGGCCATAGTAGTAC 57.645 43.478 6.72 0.00 0.00 2.73
1831 2430 3.990369 AGAACTGGGCCATAGTAGTACA 58.010 45.455 6.72 0.00 0.00 2.90
1832 2431 3.705072 AGAACTGGGCCATAGTAGTACAC 59.295 47.826 6.72 0.00 0.00 2.90
1857 2456 1.271840 ACCTAGAGATTTGGCGGCCA 61.272 55.000 19.77 19.77 0.00 5.36
1858 2457 0.109342 CCTAGAGATTTGGCGGCCAT 59.891 55.000 24.49 9.04 31.53 4.40
1859 2458 1.347707 CCTAGAGATTTGGCGGCCATA 59.652 52.381 24.49 19.20 31.53 2.74
1860 2459 2.026822 CCTAGAGATTTGGCGGCCATAT 60.027 50.000 24.49 23.36 31.53 1.78
1905 2518 4.679662 AGACGTATCGTTGTTATCTTGGG 58.320 43.478 0.00 0.00 41.37 4.12
1962 2578 1.153168 TCCCGAGCTAGCAATTGGC 60.153 57.895 18.83 2.13 45.30 4.52
1991 2618 3.642848 AGTCAAAGTTGTTCCCATGCAAT 59.357 39.130 0.00 0.00 0.00 3.56
2085 2730 4.081862 AGCTGGTTTTGATGTTGATGGATG 60.082 41.667 0.00 0.00 0.00 3.51
2093 2772 9.158233 GTTTTGATGTTGATGGATGAATTTCAT 57.842 29.630 11.64 11.64 40.34 2.57
2104 2783 9.385902 GATGGATGAATTTCATTACATGTAACG 57.614 33.333 20.26 12.91 37.20 3.18
2956 3845 0.815615 GATCCGCGCCCTTCATCTTT 60.816 55.000 0.00 0.00 0.00 2.52
3095 3991 5.683876 ATCAAATATATACGGGAGCTGCT 57.316 39.130 0.00 0.00 0.00 4.24
3123 4019 3.030291 TGACCAGTTGCCTGAAAATTGT 58.970 40.909 0.00 0.00 41.50 2.71
3126 4022 3.181476 ACCAGTTGCCTGAAAATTGTCAC 60.181 43.478 0.00 0.00 41.50 3.67
3127 4023 3.044986 CAGTTGCCTGAAAATTGTCACG 58.955 45.455 0.00 0.00 41.50 4.35
3173 4069 9.170734 CTTCCAATCTGTTCATCTTCAATCTTA 57.829 33.333 0.00 0.00 0.00 2.10
3177 4073 6.968131 TCTGTTCATCTTCAATCTTAACGG 57.032 37.500 0.00 0.00 0.00 4.44
3198 4094 8.491331 AACGGTACAAAGAACACTAAAAGTAA 57.509 30.769 0.00 0.00 0.00 2.24
3222 4120 7.931578 ATAAAAATTACAACCAGATCCGTGA 57.068 32.000 0.00 0.00 0.00 4.35
3238 4136 0.172803 GTGAACCACCTAGCGACGAT 59.827 55.000 0.00 0.00 0.00 3.73
3258 4156 0.397941 TACAAGCACTGGAGCAAGCT 59.602 50.000 0.00 0.00 39.37 3.74
3286 4184 4.451150 TGCCGTCATCGCACCTCC 62.451 66.667 0.00 0.00 35.54 4.30
3294 4192 3.957435 ATCGCACCTCCCTCACCGA 62.957 63.158 0.00 0.00 0.00 4.69
3300 4198 2.581354 CTCCCTCACCGAAGCCAG 59.419 66.667 0.00 0.00 0.00 4.85
3302 4200 4.785453 CCCTCACCGAAGCCAGGC 62.785 72.222 1.84 1.84 0.00 4.85
3309 4207 2.335712 CCGAAGCCAGGCAAACCTC 61.336 63.158 15.80 0.84 46.34 3.85
3311 4209 2.982744 GAAGCCAGGCAAACCTCGC 61.983 63.158 15.80 0.00 46.34 5.03
3348 4246 1.742268 GAAGTCGTCGTACTAAGGCCT 59.258 52.381 0.00 0.00 0.00 5.19
3365 4263 1.330655 CCTCATAGGACCACCGCACT 61.331 60.000 0.00 0.00 37.67 4.40
3372 4270 1.292223 GACCACCGCACTAGAGCAA 59.708 57.895 12.77 0.00 0.00 3.91
3384 4282 0.739462 TAGAGCAACAACCATCGCCG 60.739 55.000 0.00 0.00 0.00 6.46
3390 4288 1.401552 CAACAACCATCGCCGATGAAT 59.598 47.619 27.59 12.85 42.09 2.57
3432 4335 7.836842 AGGATCAAACATGTAAATACCCAAAC 58.163 34.615 0.00 0.00 0.00 2.93
3442 4345 7.931578 TGTAAATACCCAAACGAAGATGAAT 57.068 32.000 0.00 0.00 0.00 2.57
3461 4364 5.384336 TGAATGAAGACCAGATCCAAACAA 58.616 37.500 0.00 0.00 0.00 2.83
3469 4372 3.164268 CCAGATCCAAACAAATCCACCA 58.836 45.455 0.00 0.00 0.00 4.17
3484 4387 1.546323 CCACCAAAGACCAGCACTGAT 60.546 52.381 0.00 0.00 0.00 2.90
3494 4397 0.179100 CAGCACTGATCGAATCCCGT 60.179 55.000 0.00 0.00 39.75 5.28
3497 4400 0.530650 CACTGATCGAATCCCGTGGG 60.531 60.000 0.00 0.00 39.75 4.61
3498 4401 1.069765 CTGATCGAATCCCGTGGGG 59.930 63.158 4.81 0.00 46.11 4.96
3504 4407 1.613061 GAATCCCGTGGGGTCCAAT 59.387 57.895 4.81 0.00 44.74 3.16
3505 4408 0.841289 GAATCCCGTGGGGTCCAATA 59.159 55.000 4.81 0.00 44.74 1.90
3684 4641 4.148825 GAGATGGCGCAGACCGGT 62.149 66.667 6.92 6.92 37.44 5.28
3708 4665 2.046864 CGCTGACGGGAGGAGAAGA 61.047 63.158 0.00 0.00 34.97 2.87
3726 4688 4.104897 AGAAGAAAAGGCTAAAGTGGAGGT 59.895 41.667 0.00 0.00 0.00 3.85
3747 4709 7.014326 GGAGGTGGAAAGAGAAAGTTAATTGTT 59.986 37.037 0.00 0.00 0.00 2.83
3803 4766 8.249638 CGTCTAATCATCACCATCTCTATTCAT 58.750 37.037 0.00 0.00 0.00 2.57
3804 4767 9.941325 GTCTAATCATCACCATCTCTATTCATT 57.059 33.333 0.00 0.00 0.00 2.57
3855 4821 9.699410 TGTTTCATATGGATTTACAAGGAATCT 57.301 29.630 2.13 0.00 34.65 2.40
3856 4822 9.956720 GTTTCATATGGATTTACAAGGAATCTG 57.043 33.333 2.13 0.00 34.65 2.90
3857 4823 9.919416 TTTCATATGGATTTACAAGGAATCTGA 57.081 29.630 2.13 0.00 34.65 3.27
3858 4824 8.908786 TCATATGGATTTACAAGGAATCTGAC 57.091 34.615 2.13 0.00 34.65 3.51
3859 4825 7.939039 TCATATGGATTTACAAGGAATCTGACC 59.061 37.037 2.13 0.00 34.65 4.02
3860 4826 5.512942 TGGATTTACAAGGAATCTGACCA 57.487 39.130 0.00 0.00 34.65 4.02
3861 4827 6.078456 TGGATTTACAAGGAATCTGACCAT 57.922 37.500 0.00 0.00 34.65 3.55
3862 4828 6.493166 TGGATTTACAAGGAATCTGACCATT 58.507 36.000 0.00 0.00 34.65 3.16
3863 4829 6.953520 TGGATTTACAAGGAATCTGACCATTT 59.046 34.615 0.00 0.00 34.65 2.32
3864 4830 7.093814 TGGATTTACAAGGAATCTGACCATTTG 60.094 37.037 0.00 0.00 34.65 2.32
3865 4831 7.122650 GGATTTACAAGGAATCTGACCATTTGA 59.877 37.037 0.00 0.00 34.65 2.69
3866 4832 7.452880 TTTACAAGGAATCTGACCATTTGAG 57.547 36.000 0.00 0.00 0.00 3.02
3867 4833 4.990526 ACAAGGAATCTGACCATTTGAGT 58.009 39.130 0.00 0.00 0.00 3.41
3868 4834 5.388654 ACAAGGAATCTGACCATTTGAGTT 58.611 37.500 0.00 0.00 0.00 3.01
3869 4835 6.542821 ACAAGGAATCTGACCATTTGAGTTA 58.457 36.000 0.00 0.00 0.00 2.24
3870 4836 6.431234 ACAAGGAATCTGACCATTTGAGTTAC 59.569 38.462 0.00 0.00 0.00 2.50
3871 4837 5.178797 AGGAATCTGACCATTTGAGTTACG 58.821 41.667 0.00 0.00 0.00 3.18
3872 4838 4.201822 GGAATCTGACCATTTGAGTTACGC 60.202 45.833 0.00 0.00 0.00 4.42
3873 4839 3.678056 TCTGACCATTTGAGTTACGCT 57.322 42.857 0.00 0.00 0.00 5.07
3874 4840 4.002906 TCTGACCATTTGAGTTACGCTT 57.997 40.909 0.00 0.00 0.00 4.68
3875 4841 5.142061 TCTGACCATTTGAGTTACGCTTA 57.858 39.130 0.00 0.00 0.00 3.09
3876 4842 5.168569 TCTGACCATTTGAGTTACGCTTAG 58.831 41.667 0.00 0.00 0.00 2.18
3877 4843 4.890088 TGACCATTTGAGTTACGCTTAGT 58.110 39.130 0.00 0.00 0.00 2.24
3878 4844 4.927425 TGACCATTTGAGTTACGCTTAGTC 59.073 41.667 0.00 0.00 0.00 2.59
3879 4845 5.148651 ACCATTTGAGTTACGCTTAGTCT 57.851 39.130 0.00 0.00 0.00 3.24
3880 4846 6.071784 TGACCATTTGAGTTACGCTTAGTCTA 60.072 38.462 0.00 0.00 0.00 2.59
3881 4847 6.875076 ACCATTTGAGTTACGCTTAGTCTAT 58.125 36.000 0.00 0.00 0.00 1.98
3882 4848 6.757010 ACCATTTGAGTTACGCTTAGTCTATG 59.243 38.462 0.00 0.00 0.00 2.23
3883 4849 6.978659 CCATTTGAGTTACGCTTAGTCTATGA 59.021 38.462 0.00 0.00 0.00 2.15
3884 4850 7.653713 CCATTTGAGTTACGCTTAGTCTATGAT 59.346 37.037 0.00 0.00 0.00 2.45
3885 4851 9.678941 CATTTGAGTTACGCTTAGTCTATGATA 57.321 33.333 0.00 0.00 0.00 2.15
3886 4852 9.680315 ATTTGAGTTACGCTTAGTCTATGATAC 57.320 33.333 0.00 0.00 0.00 2.24
3887 4853 7.199541 TGAGTTACGCTTAGTCTATGATACC 57.800 40.000 0.00 0.00 0.00 2.73
3888 4854 6.996879 TGAGTTACGCTTAGTCTATGATACCT 59.003 38.462 0.00 0.00 0.00 3.08
3889 4855 7.501559 TGAGTTACGCTTAGTCTATGATACCTT 59.498 37.037 0.00 0.00 0.00 3.50
3890 4856 8.235359 AGTTACGCTTAGTCTATGATACCTTT 57.765 34.615 0.00 0.00 0.00 3.11
3891 4857 8.693625 AGTTACGCTTAGTCTATGATACCTTTT 58.306 33.333 0.00 0.00 0.00 2.27
3892 4858 8.753175 GTTACGCTTAGTCTATGATACCTTTTG 58.247 37.037 0.00 0.00 0.00 2.44
3893 4859 6.875076 ACGCTTAGTCTATGATACCTTTTGT 58.125 36.000 0.00 0.00 0.00 2.83
3894 4860 6.979238 ACGCTTAGTCTATGATACCTTTTGTC 59.021 38.462 0.00 0.00 0.00 3.18
3895 4861 6.421202 CGCTTAGTCTATGATACCTTTTGTCC 59.579 42.308 0.00 0.00 0.00 4.02
3896 4862 7.501844 GCTTAGTCTATGATACCTTTTGTCCT 58.498 38.462 0.00 0.00 0.00 3.85
3897 4863 8.639761 GCTTAGTCTATGATACCTTTTGTCCTA 58.360 37.037 0.00 0.00 0.00 2.94
3898 4864 9.968870 CTTAGTCTATGATACCTTTTGTCCTAC 57.031 37.037 0.00 0.00 0.00 3.18
3899 4865 7.362802 AGTCTATGATACCTTTTGTCCTACC 57.637 40.000 0.00 0.00 0.00 3.18
3900 4866 6.326843 AGTCTATGATACCTTTTGTCCTACCC 59.673 42.308 0.00 0.00 0.00 3.69
3901 4867 6.326843 GTCTATGATACCTTTTGTCCTACCCT 59.673 42.308 0.00 0.00 0.00 4.34
3902 4868 5.632034 ATGATACCTTTTGTCCTACCCTC 57.368 43.478 0.00 0.00 0.00 4.30
3903 4869 3.778629 TGATACCTTTTGTCCTACCCTCC 59.221 47.826 0.00 0.00 0.00 4.30
3904 4870 2.127651 ACCTTTTGTCCTACCCTCCA 57.872 50.000 0.00 0.00 0.00 3.86
3905 4871 1.703513 ACCTTTTGTCCTACCCTCCAC 59.296 52.381 0.00 0.00 0.00 4.02
3906 4872 1.985895 CCTTTTGTCCTACCCTCCACT 59.014 52.381 0.00 0.00 0.00 4.00
3907 4873 2.290323 CCTTTTGTCCTACCCTCCACTG 60.290 54.545 0.00 0.00 0.00 3.66
3908 4874 1.358152 TTTGTCCTACCCTCCACTGG 58.642 55.000 0.00 0.00 0.00 4.00
3909 4875 1.198759 TTGTCCTACCCTCCACTGGC 61.199 60.000 0.00 0.00 0.00 4.85
3910 4876 1.612442 GTCCTACCCTCCACTGGCA 60.612 63.158 0.00 0.00 0.00 4.92
3911 4877 1.306141 TCCTACCCTCCACTGGCAG 60.306 63.158 14.16 14.16 0.00 4.85
3912 4878 2.586792 CTACCCTCCACTGGCAGC 59.413 66.667 15.89 0.00 0.00 5.25
3913 4879 2.203922 TACCCTCCACTGGCAGCA 60.204 61.111 15.89 0.00 0.00 4.41
3914 4880 2.249413 CTACCCTCCACTGGCAGCAG 62.249 65.000 15.89 7.54 0.00 4.24
3915 4881 2.746947 TACCCTCCACTGGCAGCAGA 62.747 60.000 15.89 10.66 0.00 4.26
3916 4882 2.268280 CCTCCACTGGCAGCAGAG 59.732 66.667 21.52 21.52 0.00 3.35
3917 4883 2.591072 CCTCCACTGGCAGCAGAGT 61.591 63.158 24.56 2.47 0.00 3.24
3918 4884 1.079266 CTCCACTGGCAGCAGAGTC 60.079 63.158 20.63 0.00 0.00 3.36
3919 4885 2.046507 CCACTGGCAGCAGAGTCC 60.047 66.667 15.89 0.00 0.00 3.85
3920 4886 2.745698 CACTGGCAGCAGAGTCCA 59.254 61.111 15.89 0.00 0.00 4.02
3921 4887 1.298993 CACTGGCAGCAGAGTCCAT 59.701 57.895 15.89 0.00 0.00 3.41
3922 4888 0.538584 CACTGGCAGCAGAGTCCATA 59.461 55.000 15.89 0.00 0.00 2.74
3923 4889 1.065926 CACTGGCAGCAGAGTCCATAA 60.066 52.381 15.89 0.00 0.00 1.90
3924 4890 1.209019 ACTGGCAGCAGAGTCCATAAG 59.791 52.381 15.89 0.00 0.00 1.73
3925 4891 0.543277 TGGCAGCAGAGTCCATAAGG 59.457 55.000 0.00 0.00 0.00 2.69
3926 4892 0.833287 GGCAGCAGAGTCCATAAGGA 59.167 55.000 0.00 0.00 43.21 3.36
3948 4914 9.785982 AAGGAAACTAAGAGATATTAAGGCATC 57.214 33.333 0.00 0.00 42.68 3.91
3949 4915 8.379331 AGGAAACTAAGAGATATTAAGGCATCC 58.621 37.037 0.00 0.00 40.61 3.51
3950 4916 8.379331 GGAAACTAAGAGATATTAAGGCATCCT 58.621 37.037 0.00 0.00 33.87 3.24
3951 4917 9.785982 GAAACTAAGAGATATTAAGGCATCCTT 57.214 33.333 3.40 3.40 46.63 3.36
3965 4931 7.736447 AAGGCATCCTTTTAATAGAGAATCG 57.264 36.000 0.00 0.00 41.69 3.34
3966 4932 7.067496 AGGCATCCTTTTAATAGAGAATCGA 57.933 36.000 0.00 0.00 42.67 3.59
3967 4933 7.509546 AGGCATCCTTTTAATAGAGAATCGAA 58.490 34.615 0.00 0.00 42.67 3.71
3968 4934 7.993183 AGGCATCCTTTTAATAGAGAATCGAAA 59.007 33.333 0.00 0.00 42.67 3.46
3969 4935 8.070769 GGCATCCTTTTAATAGAGAATCGAAAC 58.929 37.037 0.00 0.00 42.67 2.78
3970 4936 8.612619 GCATCCTTTTAATAGAGAATCGAAACA 58.387 33.333 0.00 0.00 42.67 2.83
3988 4954 8.814733 TCGAAACAAAATATTAACACATAGCG 57.185 30.769 0.00 0.00 0.00 4.26
3989 4955 8.657729 TCGAAACAAAATATTAACACATAGCGA 58.342 29.630 0.00 0.00 0.00 4.93
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 4.385825 AGTTTCTGCTATTTGTCGTGGAA 58.614 39.130 0.00 0.00 0.00 3.53
28 29 7.704472 CACTCTAGTAGGAGTTTCTGCTATTTG 59.296 40.741 0.00 0.20 43.14 2.32
30 31 6.183360 GCACTCTAGTAGGAGTTTCTGCTATT 60.183 42.308 0.00 0.95 43.14 1.73
34 35 3.429684 GGCACTCTAGTAGGAGTTTCTGC 60.430 52.174 0.00 0.74 43.14 4.26
42 43 0.395311 CGGGTGGCACTCTAGTAGGA 60.395 60.000 16.74 0.00 0.00 2.94
61 62 2.887733 CACGTCGTGTTTTTCTAGTGC 58.112 47.619 17.30 0.00 0.00 4.40
99 100 4.614993 CGGTGTTCTTTTGTTCACTGTGTT 60.615 41.667 7.79 0.00 33.94 3.32
103 104 3.680789 GTCGGTGTTCTTTTGTTCACTG 58.319 45.455 0.00 0.00 38.19 3.66
115 116 0.652465 GTGCGTTTTCGTCGGTGTTC 60.652 55.000 0.00 0.00 46.03 3.18
146 155 0.947244 CACCACTTCCTTGTGTGCTC 59.053 55.000 0.00 0.00 36.30 4.26
200 209 0.534203 GAAACGGAGAAGTGGTGCCA 60.534 55.000 0.00 0.00 0.00 4.92
203 212 3.467803 AGAAAGAAACGGAGAAGTGGTG 58.532 45.455 0.00 0.00 0.00 4.17
205 214 5.500645 AAAAGAAAGAAACGGAGAAGTGG 57.499 39.130 0.00 0.00 0.00 4.00
227 262 5.277731 GGATGAATTGCGCAAAAAGGAAAAA 60.278 36.000 28.81 0.00 0.00 1.94
228 263 4.213059 GGATGAATTGCGCAAAAAGGAAAA 59.787 37.500 28.81 0.00 0.00 2.29
229 264 3.745458 GGATGAATTGCGCAAAAAGGAAA 59.255 39.130 28.81 9.07 0.00 3.13
230 265 3.006752 AGGATGAATTGCGCAAAAAGGAA 59.993 39.130 28.81 10.17 0.00 3.36
231 266 2.562298 AGGATGAATTGCGCAAAAAGGA 59.438 40.909 28.81 9.93 0.00 3.36
232 267 2.925563 GAGGATGAATTGCGCAAAAAGG 59.074 45.455 28.81 0.00 0.00 3.11
253 288 0.796312 CCACATGAACGAAACGGAGG 59.204 55.000 0.00 0.00 0.00 4.30
256 291 1.070175 GTGTCCACATGAACGAAACGG 60.070 52.381 0.00 0.00 0.00 4.44
284 319 0.247460 CGGCATGTCCTTCTCTGTCA 59.753 55.000 0.00 0.00 0.00 3.58
354 389 6.476706 ACATGTCGATATGTGTTCACATGTAG 59.523 38.462 24.76 18.04 43.13 2.74
355 390 6.337356 ACATGTCGATATGTGTTCACATGTA 58.663 36.000 24.76 9.17 43.13 2.29
356 391 5.178061 ACATGTCGATATGTGTTCACATGT 58.822 37.500 24.76 18.54 39.68 3.21
368 403 0.664466 CGAGCGCCACATGTCGATAT 60.664 55.000 2.29 0.00 34.28 1.63
492 935 9.740239 AGGATGAATGATTTTTGTTTATGATCG 57.260 29.630 0.00 0.00 0.00 3.69
549 1002 2.038689 TCGCTATCTCTCTCGGGTGTAT 59.961 50.000 0.00 0.00 0.00 2.29
626 1079 0.454957 AATGACGAACGACCGTACGG 60.455 55.000 32.22 32.22 43.49 4.02
627 1080 1.330306 AAATGACGAACGACCGTACG 58.670 50.000 8.69 8.69 43.49 3.67
628 1081 2.159934 CCAAAATGACGAACGACCGTAC 60.160 50.000 6.81 0.00 43.49 3.67
663 1117 2.892425 GAAGACGGCAGGGCGATG 60.892 66.667 22.28 0.00 0.00 3.84
760 1217 8.994170 GGAGGATAAAACATTCTGCTTCTATAC 58.006 37.037 0.00 0.00 0.00 1.47
813 1273 3.604629 GTGCTAGCACGGGAGAGA 58.395 61.111 30.66 0.00 37.19 3.10
927 1397 2.283351 GGTGTGTGTTTGTCACTCGTAC 59.717 50.000 0.00 0.00 46.27 3.67
928 1398 2.542597 GGTGTGTGTTTGTCACTCGTA 58.457 47.619 0.00 0.00 46.27 3.43
929 1399 1.365699 GGTGTGTGTTTGTCACTCGT 58.634 50.000 0.00 0.00 46.27 4.18
936 1406 1.153409 TACCGCGGTGTGTGTTTGT 60.153 52.632 40.02 12.21 0.00 2.83
937 1407 1.567537 CTACCGCGGTGTGTGTTTG 59.432 57.895 40.02 15.04 0.00 2.93
958 1436 4.133013 ACAAACAACTGTTACTCCGAGT 57.867 40.909 6.25 6.25 37.25 4.18
1348 1886 8.827177 TTGTGGATCGAACCTATATCATTTAC 57.173 34.615 13.40 0.00 0.00 2.01
1566 2165 4.037327 TCTCTATCAGTCAATGCCTTCTCG 59.963 45.833 0.00 0.00 0.00 4.04
1608 2207 3.192212 GGAGAATCAGCCAAAAGAACTGG 59.808 47.826 0.00 0.00 36.25 4.00
1613 2212 4.371624 TTCTGGAGAATCAGCCAAAAGA 57.628 40.909 0.00 0.00 36.25 2.52
1626 2225 3.386078 CCCGATTCTCAAGATTCTGGAGA 59.614 47.826 15.56 15.56 38.64 3.71
1627 2226 3.133721 ACCCGATTCTCAAGATTCTGGAG 59.866 47.826 11.35 11.35 34.52 3.86
1628 2227 3.107601 ACCCGATTCTCAAGATTCTGGA 58.892 45.455 15.14 0.00 34.52 3.86
1629 2228 3.133721 AGACCCGATTCTCAAGATTCTGG 59.866 47.826 9.49 9.49 35.95 3.86
1630 2229 4.399004 AGACCCGATTCTCAAGATTCTG 57.601 45.455 0.00 0.00 0.00 3.02
1631 2230 4.141824 GGAAGACCCGATTCTCAAGATTCT 60.142 45.833 0.00 0.00 0.00 2.40
1632 2231 4.123506 GGAAGACCCGATTCTCAAGATTC 58.876 47.826 0.00 0.00 0.00 2.52
1633 2232 4.143986 GGAAGACCCGATTCTCAAGATT 57.856 45.455 0.00 0.00 0.00 2.40
1634 2233 3.828875 GGAAGACCCGATTCTCAAGAT 57.171 47.619 0.00 0.00 0.00 2.40
1647 2246 1.065782 GGAAGAAGCTGAGGGAAGACC 60.066 57.143 0.00 0.00 40.67 3.85
1648 2247 1.625818 TGGAAGAAGCTGAGGGAAGAC 59.374 52.381 0.00 0.00 0.00 3.01
1649 2248 2.030027 TGGAAGAAGCTGAGGGAAGA 57.970 50.000 0.00 0.00 0.00 2.87
1650 2249 2.867109 TTGGAAGAAGCTGAGGGAAG 57.133 50.000 0.00 0.00 0.00 3.46
1651 2250 3.593442 TTTTGGAAGAAGCTGAGGGAA 57.407 42.857 0.00 0.00 0.00 3.97
1652 2251 3.331889 AGATTTTGGAAGAAGCTGAGGGA 59.668 43.478 0.00 0.00 0.00 4.20
1653 2252 3.694926 AGATTTTGGAAGAAGCTGAGGG 58.305 45.455 0.00 0.00 0.00 4.30
1654 2253 4.763793 TCAAGATTTTGGAAGAAGCTGAGG 59.236 41.667 0.00 0.00 34.97 3.86
1655 2254 5.954296 TCAAGATTTTGGAAGAAGCTGAG 57.046 39.130 0.00 0.00 34.97 3.35
1656 2255 5.829924 AGTTCAAGATTTTGGAAGAAGCTGA 59.170 36.000 0.00 0.00 34.97 4.26
1657 2256 6.081872 AGTTCAAGATTTTGGAAGAAGCTG 57.918 37.500 0.00 0.00 34.97 4.24
1658 2257 5.829924 TGAGTTCAAGATTTTGGAAGAAGCT 59.170 36.000 0.00 0.00 34.97 3.74
1659 2258 6.076981 TGAGTTCAAGATTTTGGAAGAAGC 57.923 37.500 0.00 0.00 34.97 3.86
1735 2334 8.122481 ACCCCAGAATCTTGAACCTATATTTTT 58.878 33.333 0.00 0.00 0.00 1.94
1736 2335 7.652554 ACCCCAGAATCTTGAACCTATATTTT 58.347 34.615 0.00 0.00 0.00 1.82
1737 2336 7.226059 ACCCCAGAATCTTGAACCTATATTT 57.774 36.000 0.00 0.00 0.00 1.40
1738 2337 6.848562 ACCCCAGAATCTTGAACCTATATT 57.151 37.500 0.00 0.00 0.00 1.28
1739 2338 7.474936 GCTTACCCCAGAATCTTGAACCTATAT 60.475 40.741 0.00 0.00 0.00 0.86
1740 2339 6.183361 GCTTACCCCAGAATCTTGAACCTATA 60.183 42.308 0.00 0.00 0.00 1.31
1741 2340 5.398012 GCTTACCCCAGAATCTTGAACCTAT 60.398 44.000 0.00 0.00 0.00 2.57
1742 2341 4.080526 GCTTACCCCAGAATCTTGAACCTA 60.081 45.833 0.00 0.00 0.00 3.08
1743 2342 3.308473 GCTTACCCCAGAATCTTGAACCT 60.308 47.826 0.00 0.00 0.00 3.50
1744 2343 3.017442 GCTTACCCCAGAATCTTGAACC 58.983 50.000 0.00 0.00 0.00 3.62
1745 2344 3.691609 CAGCTTACCCCAGAATCTTGAAC 59.308 47.826 0.00 0.00 0.00 3.18
1746 2345 3.308402 CCAGCTTACCCCAGAATCTTGAA 60.308 47.826 0.00 0.00 0.00 2.69
1747 2346 2.239654 CCAGCTTACCCCAGAATCTTGA 59.760 50.000 0.00 0.00 0.00 3.02
1748 2347 2.239654 TCCAGCTTACCCCAGAATCTTG 59.760 50.000 0.00 0.00 0.00 3.02
1749 2348 2.562296 TCCAGCTTACCCCAGAATCTT 58.438 47.619 0.00 0.00 0.00 2.40
1750 2349 2.270434 TCCAGCTTACCCCAGAATCT 57.730 50.000 0.00 0.00 0.00 2.40
1751 2350 2.487986 CCATCCAGCTTACCCCAGAATC 60.488 54.545 0.00 0.00 0.00 2.52
1752 2351 1.496429 CCATCCAGCTTACCCCAGAAT 59.504 52.381 0.00 0.00 0.00 2.40
1753 2352 0.918983 CCATCCAGCTTACCCCAGAA 59.081 55.000 0.00 0.00 0.00 3.02
1754 2353 0.044092 TCCATCCAGCTTACCCCAGA 59.956 55.000 0.00 0.00 0.00 3.86
1755 2354 0.471617 CTCCATCCAGCTTACCCCAG 59.528 60.000 0.00 0.00 0.00 4.45
1756 2355 0.988145 CCTCCATCCAGCTTACCCCA 60.988 60.000 0.00 0.00 0.00 4.96
1757 2356 1.709994 CCCTCCATCCAGCTTACCCC 61.710 65.000 0.00 0.00 0.00 4.95
1758 2357 0.988678 ACCCTCCATCCAGCTTACCC 60.989 60.000 0.00 0.00 0.00 3.69
1759 2358 0.470341 GACCCTCCATCCAGCTTACC 59.530 60.000 0.00 0.00 0.00 2.85
1760 2359 0.105039 CGACCCTCCATCCAGCTTAC 59.895 60.000 0.00 0.00 0.00 2.34
1761 2360 0.032515 TCGACCCTCCATCCAGCTTA 60.033 55.000 0.00 0.00 0.00 3.09
1762 2361 0.692419 ATCGACCCTCCATCCAGCTT 60.692 55.000 0.00 0.00 0.00 3.74
1763 2362 0.692419 AATCGACCCTCCATCCAGCT 60.692 55.000 0.00 0.00 0.00 4.24
1764 2363 0.181350 AAATCGACCCTCCATCCAGC 59.819 55.000 0.00 0.00 0.00 4.85
1765 2364 2.092968 TGAAAATCGACCCTCCATCCAG 60.093 50.000 0.00 0.00 0.00 3.86
1766 2365 1.912731 TGAAAATCGACCCTCCATCCA 59.087 47.619 0.00 0.00 0.00 3.41
1767 2366 2.710096 TGAAAATCGACCCTCCATCC 57.290 50.000 0.00 0.00 0.00 3.51
1768 2367 3.873910 TCTTGAAAATCGACCCTCCATC 58.126 45.455 0.00 0.00 0.00 3.51
1769 2368 4.510167 ATCTTGAAAATCGACCCTCCAT 57.490 40.909 0.00 0.00 0.00 3.41
1770 2369 4.301072 AATCTTGAAAATCGACCCTCCA 57.699 40.909 0.00 0.00 0.00 3.86
1771 2370 5.402398 CAAAATCTTGAAAATCGACCCTCC 58.598 41.667 0.00 0.00 34.14 4.30
1772 2371 5.402398 CCAAAATCTTGAAAATCGACCCTC 58.598 41.667 0.00 0.00 34.14 4.30
1773 2372 4.220602 CCCAAAATCTTGAAAATCGACCCT 59.779 41.667 0.00 0.00 34.14 4.34
1774 2373 4.219725 TCCCAAAATCTTGAAAATCGACCC 59.780 41.667 0.00 0.00 34.14 4.46
1775 2374 5.183140 TCTCCCAAAATCTTGAAAATCGACC 59.817 40.000 0.00 0.00 34.14 4.79
1776 2375 6.254281 TCTCCCAAAATCTTGAAAATCGAC 57.746 37.500 0.00 0.00 34.14 4.20
1777 2376 6.892658 TTCTCCCAAAATCTTGAAAATCGA 57.107 33.333 0.00 0.00 34.14 3.59
1778 2377 6.470235 CGATTCTCCCAAAATCTTGAAAATCG 59.530 38.462 0.00 0.00 35.52 3.34
1779 2378 6.753744 CCGATTCTCCCAAAATCTTGAAAATC 59.246 38.462 0.00 0.00 34.14 2.17
1780 2379 6.211384 ACCGATTCTCCCAAAATCTTGAAAAT 59.789 34.615 0.00 0.00 34.14 1.82
1781 2380 5.538433 ACCGATTCTCCCAAAATCTTGAAAA 59.462 36.000 0.00 0.00 34.14 2.29
1782 2381 5.048083 CACCGATTCTCCCAAAATCTTGAAA 60.048 40.000 0.00 0.00 34.14 2.69
1783 2382 4.458989 CACCGATTCTCCCAAAATCTTGAA 59.541 41.667 0.00 0.00 34.14 2.69
1784 2383 4.009675 CACCGATTCTCCCAAAATCTTGA 58.990 43.478 0.00 0.00 34.14 3.02
1785 2384 4.009675 TCACCGATTCTCCCAAAATCTTG 58.990 43.478 0.00 0.00 32.15 3.02
1786 2385 4.301072 TCACCGATTCTCCCAAAATCTT 57.699 40.909 0.00 0.00 32.15 2.40
1787 2386 4.301072 TTCACCGATTCTCCCAAAATCT 57.699 40.909 0.00 0.00 32.15 2.40
1788 2387 5.183140 TCTTTTCACCGATTCTCCCAAAATC 59.817 40.000 0.00 0.00 0.00 2.17
1789 2388 5.076873 TCTTTTCACCGATTCTCCCAAAAT 58.923 37.500 0.00 0.00 0.00 1.82
1790 2389 4.465886 TCTTTTCACCGATTCTCCCAAAA 58.534 39.130 0.00 0.00 0.00 2.44
1791 2390 4.093472 TCTTTTCACCGATTCTCCCAAA 57.907 40.909 0.00 0.00 0.00 3.28
1792 2391 3.780804 TCTTTTCACCGATTCTCCCAA 57.219 42.857 0.00 0.00 0.00 4.12
1793 2392 3.072476 AGTTCTTTTCACCGATTCTCCCA 59.928 43.478 0.00 0.00 0.00 4.37
1794 2393 3.437049 CAGTTCTTTTCACCGATTCTCCC 59.563 47.826 0.00 0.00 0.00 4.30
1795 2394 3.437049 CCAGTTCTTTTCACCGATTCTCC 59.563 47.826 0.00 0.00 0.00 3.71
1796 2395 3.437049 CCCAGTTCTTTTCACCGATTCTC 59.563 47.826 0.00 0.00 0.00 2.87
1797 2396 3.412386 CCCAGTTCTTTTCACCGATTCT 58.588 45.455 0.00 0.00 0.00 2.40
1798 2397 2.095212 GCCCAGTTCTTTTCACCGATTC 60.095 50.000 0.00 0.00 0.00 2.52
1799 2398 1.886542 GCCCAGTTCTTTTCACCGATT 59.113 47.619 0.00 0.00 0.00 3.34
1800 2399 1.534729 GCCCAGTTCTTTTCACCGAT 58.465 50.000 0.00 0.00 0.00 4.18
1801 2400 0.536460 GGCCCAGTTCTTTTCACCGA 60.536 55.000 0.00 0.00 0.00 4.69
1802 2401 0.821711 TGGCCCAGTTCTTTTCACCG 60.822 55.000 0.00 0.00 0.00 4.94
1803 2402 1.632589 ATGGCCCAGTTCTTTTCACC 58.367 50.000 0.00 0.00 0.00 4.02
1804 2403 3.421844 ACTATGGCCCAGTTCTTTTCAC 58.578 45.455 0.00 0.00 0.00 3.18
1805 2404 3.806949 ACTATGGCCCAGTTCTTTTCA 57.193 42.857 0.00 0.00 0.00 2.69
1806 2405 4.844884 ACTACTATGGCCCAGTTCTTTTC 58.155 43.478 11.99 0.00 0.00 2.29
1807 2406 4.929146 ACTACTATGGCCCAGTTCTTTT 57.071 40.909 11.99 0.00 0.00 2.27
1808 2407 4.781087 TGTACTACTATGGCCCAGTTCTTT 59.219 41.667 11.99 0.00 0.00 2.52
1809 2408 4.161754 GTGTACTACTATGGCCCAGTTCTT 59.838 45.833 11.99 1.21 0.00 2.52
1810 2409 3.705072 GTGTACTACTATGGCCCAGTTCT 59.295 47.826 11.99 1.73 0.00 3.01
1811 2410 3.705072 AGTGTACTACTATGGCCCAGTTC 59.295 47.826 11.99 1.36 38.04 3.01
1812 2411 3.721021 AGTGTACTACTATGGCCCAGTT 58.279 45.455 11.99 0.00 38.04 3.16
1813 2412 3.399952 AGTGTACTACTATGGCCCAGT 57.600 47.619 11.52 11.52 38.04 4.00
1826 2425 9.245481 GCCAAATCTCTAGGTATATAGTGTACT 57.755 37.037 0.00 0.00 0.00 2.73
1827 2426 8.182881 CGCCAAATCTCTAGGTATATAGTGTAC 58.817 40.741 0.00 0.00 0.00 2.90
1828 2427 7.338703 CCGCCAAATCTCTAGGTATATAGTGTA 59.661 40.741 0.00 0.00 0.00 2.90
1829 2428 6.153000 CCGCCAAATCTCTAGGTATATAGTGT 59.847 42.308 0.00 0.00 0.00 3.55
1830 2429 6.565234 CCGCCAAATCTCTAGGTATATAGTG 58.435 44.000 0.00 0.00 0.00 2.74
1831 2430 5.127356 GCCGCCAAATCTCTAGGTATATAGT 59.873 44.000 0.00 0.00 0.00 2.12
1832 2431 5.452077 GGCCGCCAAATCTCTAGGTATATAG 60.452 48.000 3.91 0.00 0.00 1.31
1890 2503 3.006940 GACATGCCCAAGATAACAACGA 58.993 45.455 0.00 0.00 0.00 3.85
1905 2518 1.686052 TGGTTGGGTTGAAAGACATGC 59.314 47.619 0.00 0.00 0.00 4.06
1962 2578 3.002348 GGGAACAACTTTGACTTCACTCG 59.998 47.826 0.00 0.00 0.00 4.18
2093 2772 6.814146 TCACAATCAGCATACGTTACATGTAA 59.186 34.615 14.35 14.35 0.00 2.41
2104 2783 5.611796 TCACAAACTCACAATCAGCATAC 57.388 39.130 0.00 0.00 0.00 2.39
2143 2822 1.070601 TCGGCTGCATGCATACATAGT 59.929 47.619 22.97 0.00 45.15 2.12
2608 3497 4.626081 ACGGCGCTGCAGACCTTT 62.626 61.111 20.43 4.69 0.00 3.11
2956 3845 1.215382 CTGCCTGACGTTGATCGGA 59.785 57.895 0.00 0.00 44.69 4.55
3086 3982 0.817229 GTCAATAGGCAGCAGCTCCC 60.817 60.000 0.00 0.00 41.70 4.30
3095 3991 3.264574 GGCAACTGGTCAATAGGCA 57.735 52.632 0.00 0.00 0.00 4.75
3139 4035 8.924511 AGATGAACAGATTGGAAGTTTCTTTA 57.075 30.769 0.00 0.00 0.00 1.85
3140 4036 7.830099 AGATGAACAGATTGGAAGTTTCTTT 57.170 32.000 0.00 0.00 0.00 2.52
3147 4043 7.627298 AGATTGAAGATGAACAGATTGGAAG 57.373 36.000 0.00 0.00 0.00 3.46
3154 4050 6.464222 ACCGTTAAGATTGAAGATGAACAGA 58.536 36.000 0.00 0.00 0.00 3.41
3157 4053 7.591006 TGTACCGTTAAGATTGAAGATGAAC 57.409 36.000 0.00 0.00 0.00 3.18
3173 4069 6.990341 ACTTTTAGTGTTCTTTGTACCGTT 57.010 33.333 0.00 0.00 0.00 4.44
3198 4094 7.931578 TCACGGATCTGGTTGTAATTTTTAT 57.068 32.000 6.47 0.00 0.00 1.40
3222 4120 1.820519 TGTAATCGTCGCTAGGTGGTT 59.179 47.619 0.00 0.00 0.00 3.67
3238 4136 1.202806 AGCTTGCTCCAGTGCTTGTAA 60.203 47.619 0.00 0.00 30.96 2.41
3269 4167 4.451150 GGAGGTGCGATGACGGCA 62.451 66.667 0.00 0.00 40.15 5.69
3280 4178 2.266055 GCTTCGGTGAGGGAGGTG 59.734 66.667 0.00 0.00 0.00 4.00
3281 4179 3.003763 GGCTTCGGTGAGGGAGGT 61.004 66.667 0.00 0.00 0.00 3.85
3286 4184 3.551496 TTGCCTGGCTTCGGTGAGG 62.551 63.158 21.03 0.00 0.00 3.86
3300 4198 2.088950 TTACTACAGCGAGGTTTGCC 57.911 50.000 0.00 0.00 0.00 4.52
3325 4223 2.363683 CCTTAGTACGACGACTTCCCT 58.636 52.381 0.00 0.00 0.00 4.20
3333 4231 2.225963 CCTATGAGGCCTTAGTACGACG 59.774 54.545 6.77 0.00 0.00 5.12
3348 4246 1.064240 TCTAGTGCGGTGGTCCTATGA 60.064 52.381 0.00 0.00 0.00 2.15
3359 4257 0.602638 TGGTTGTTGCTCTAGTGCGG 60.603 55.000 11.87 0.00 35.36 5.69
3365 4263 0.739462 CGGCGATGGTTGTTGCTCTA 60.739 55.000 0.00 0.00 0.00 2.43
3372 4270 2.613026 TATTCATCGGCGATGGTTGT 57.387 45.000 39.82 27.08 40.15 3.32
3384 4282 7.974501 TCCTTCTGTTCTACGACTTTATTCATC 59.025 37.037 0.00 0.00 0.00 2.92
3390 4288 6.829229 TGATCCTTCTGTTCTACGACTTTA 57.171 37.500 0.00 0.00 0.00 1.85
3432 4335 4.749099 GGATCTGGTCTTCATTCATCTTCG 59.251 45.833 0.00 0.00 0.00 3.79
3442 4345 4.766891 GGATTTGTTTGGATCTGGTCTTCA 59.233 41.667 0.00 0.00 0.00 3.02
3461 4364 1.145738 AGTGCTGGTCTTTGGTGGATT 59.854 47.619 0.00 0.00 0.00 3.01
3469 4372 2.839486 TTCGATCAGTGCTGGTCTTT 57.161 45.000 10.31 0.00 38.53 2.52
3494 4397 2.224917 GGTGTGTCTTTATTGGACCCCA 60.225 50.000 0.00 0.00 33.22 4.96
3497 4400 2.488153 GCAGGTGTGTCTTTATTGGACC 59.512 50.000 0.00 0.00 33.22 4.46
3498 4401 3.058224 GTGCAGGTGTGTCTTTATTGGAC 60.058 47.826 0.00 0.00 0.00 4.02
3504 4407 1.134640 ACGTGTGCAGGTGTGTCTTTA 60.135 47.619 0.00 0.00 0.00 1.85
3505 4408 0.392461 ACGTGTGCAGGTGTGTCTTT 60.392 50.000 0.00 0.00 0.00 2.52
3663 4620 1.520342 GGTCTGCGCCATCTCTGAC 60.520 63.158 4.18 1.85 0.00 3.51
3697 4654 4.263550 ACTTTAGCCTTTTCTTCTCCTCCC 60.264 45.833 0.00 0.00 0.00 4.30
3708 4665 2.445525 TCCACCTCCACTTTAGCCTTTT 59.554 45.455 0.00 0.00 0.00 2.27
3747 4709 7.039363 ACCAAATTAAGGCTTAAAGTGCACATA 60.039 33.333 22.42 8.99 0.00 2.29
3833 4799 7.939039 GGTCAGATTCCTTGTAAATCCATATGA 59.061 37.037 3.65 0.00 34.34 2.15
3838 4804 5.512942 TGGTCAGATTCCTTGTAAATCCA 57.487 39.130 0.00 0.00 34.34 3.41
3839 4805 7.122650 TCAAATGGTCAGATTCCTTGTAAATCC 59.877 37.037 0.00 0.00 34.34 3.01
3840 4806 8.055279 TCAAATGGTCAGATTCCTTGTAAATC 57.945 34.615 0.00 0.00 34.08 2.17
3841 4807 7.671398 ACTCAAATGGTCAGATTCCTTGTAAAT 59.329 33.333 0.00 0.00 0.00 1.40
3842 4808 7.004086 ACTCAAATGGTCAGATTCCTTGTAAA 58.996 34.615 0.00 0.00 0.00 2.01
3843 4809 6.542821 ACTCAAATGGTCAGATTCCTTGTAA 58.457 36.000 0.00 0.00 0.00 2.41
3844 4810 6.126863 ACTCAAATGGTCAGATTCCTTGTA 57.873 37.500 0.00 0.00 0.00 2.41
3845 4811 4.990526 ACTCAAATGGTCAGATTCCTTGT 58.009 39.130 0.00 0.00 0.00 3.16
3846 4812 5.972107 AACTCAAATGGTCAGATTCCTTG 57.028 39.130 0.00 0.00 0.00 3.61
3847 4813 5.643777 CGTAACTCAAATGGTCAGATTCCTT 59.356 40.000 0.00 0.00 0.00 3.36
3849 4815 4.201822 GCGTAACTCAAATGGTCAGATTCC 60.202 45.833 0.00 0.00 0.00 3.01
3850 4816 4.631813 AGCGTAACTCAAATGGTCAGATTC 59.368 41.667 0.00 0.00 0.00 2.52
3852 4818 4.207891 AGCGTAACTCAAATGGTCAGAT 57.792 40.909 0.00 0.00 0.00 2.90
3853 4819 3.678056 AGCGTAACTCAAATGGTCAGA 57.322 42.857 0.00 0.00 0.00 3.27
3854 4820 4.929808 ACTAAGCGTAACTCAAATGGTCAG 59.070 41.667 0.00 0.00 0.00 3.51
3855 4821 4.890088 ACTAAGCGTAACTCAAATGGTCA 58.110 39.130 0.00 0.00 0.00 4.02
3856 4822 5.169295 AGACTAAGCGTAACTCAAATGGTC 58.831 41.667 0.00 0.00 0.00 4.02
3857 4823 5.148651 AGACTAAGCGTAACTCAAATGGT 57.851 39.130 0.00 0.00 0.00 3.55
3858 4824 6.978659 TCATAGACTAAGCGTAACTCAAATGG 59.021 38.462 0.00 0.00 0.00 3.16
3859 4825 7.987268 TCATAGACTAAGCGTAACTCAAATG 57.013 36.000 0.00 0.00 0.00 2.32
3860 4826 9.680315 GTATCATAGACTAAGCGTAACTCAAAT 57.320 33.333 0.00 0.00 0.00 2.32
3861 4827 8.133627 GGTATCATAGACTAAGCGTAACTCAAA 58.866 37.037 0.00 0.00 0.00 2.69
3862 4828 7.501559 AGGTATCATAGACTAAGCGTAACTCAA 59.498 37.037 0.00 0.00 0.00 3.02
3863 4829 6.996879 AGGTATCATAGACTAAGCGTAACTCA 59.003 38.462 0.00 0.00 0.00 3.41
3864 4830 7.437793 AGGTATCATAGACTAAGCGTAACTC 57.562 40.000 0.00 0.00 0.00 3.01
3865 4831 7.820578 AAGGTATCATAGACTAAGCGTAACT 57.179 36.000 0.00 0.00 0.00 2.24
3866 4832 8.753175 CAAAAGGTATCATAGACTAAGCGTAAC 58.247 37.037 0.00 0.00 0.00 2.50
3867 4833 8.472413 ACAAAAGGTATCATAGACTAAGCGTAA 58.528 33.333 0.00 0.00 0.00 3.18
3868 4834 8.004087 ACAAAAGGTATCATAGACTAAGCGTA 57.996 34.615 0.00 0.00 0.00 4.42
3869 4835 6.875076 ACAAAAGGTATCATAGACTAAGCGT 58.125 36.000 0.00 0.00 0.00 5.07
3870 4836 6.421202 GGACAAAAGGTATCATAGACTAAGCG 59.579 42.308 0.00 0.00 0.00 4.68
3871 4837 7.501844 AGGACAAAAGGTATCATAGACTAAGC 58.498 38.462 0.00 0.00 0.00 3.09
3872 4838 9.968870 GTAGGACAAAAGGTATCATAGACTAAG 57.031 37.037 0.00 0.00 0.00 2.18
3873 4839 8.921205 GGTAGGACAAAAGGTATCATAGACTAA 58.079 37.037 0.00 0.00 0.00 2.24
3874 4840 7.508296 GGGTAGGACAAAAGGTATCATAGACTA 59.492 40.741 0.00 0.00 0.00 2.59
3875 4841 6.326843 GGGTAGGACAAAAGGTATCATAGACT 59.673 42.308 0.00 0.00 0.00 3.24
3876 4842 6.326843 AGGGTAGGACAAAAGGTATCATAGAC 59.673 42.308 0.00 0.00 0.00 2.59
3877 4843 6.449956 AGGGTAGGACAAAAGGTATCATAGA 58.550 40.000 0.00 0.00 0.00 1.98
3878 4844 6.239629 GGAGGGTAGGACAAAAGGTATCATAG 60.240 46.154 0.00 0.00 0.00 2.23
3879 4845 5.605488 GGAGGGTAGGACAAAAGGTATCATA 59.395 44.000 0.00 0.00 0.00 2.15
3880 4846 4.412528 GGAGGGTAGGACAAAAGGTATCAT 59.587 45.833 0.00 0.00 0.00 2.45
3881 4847 3.778629 GGAGGGTAGGACAAAAGGTATCA 59.221 47.826 0.00 0.00 0.00 2.15
3882 4848 3.778629 TGGAGGGTAGGACAAAAGGTATC 59.221 47.826 0.00 0.00 0.00 2.24
3883 4849 3.522343 GTGGAGGGTAGGACAAAAGGTAT 59.478 47.826 0.00 0.00 0.00 2.73
3884 4850 2.908351 GTGGAGGGTAGGACAAAAGGTA 59.092 50.000 0.00 0.00 0.00 3.08
3885 4851 1.703513 GTGGAGGGTAGGACAAAAGGT 59.296 52.381 0.00 0.00 0.00 3.50
3886 4852 1.985895 AGTGGAGGGTAGGACAAAAGG 59.014 52.381 0.00 0.00 0.00 3.11
3887 4853 2.290323 CCAGTGGAGGGTAGGACAAAAG 60.290 54.545 1.68 0.00 0.00 2.27
3888 4854 1.702957 CCAGTGGAGGGTAGGACAAAA 59.297 52.381 1.68 0.00 0.00 2.44
3889 4855 1.358152 CCAGTGGAGGGTAGGACAAA 58.642 55.000 1.68 0.00 0.00 2.83
3890 4856 1.198759 GCCAGTGGAGGGTAGGACAA 61.199 60.000 15.20 0.00 0.00 3.18
3891 4857 1.612442 GCCAGTGGAGGGTAGGACA 60.612 63.158 15.20 0.00 0.00 4.02
3892 4858 1.612442 TGCCAGTGGAGGGTAGGAC 60.612 63.158 15.20 0.00 0.00 3.85
3893 4859 1.306141 CTGCCAGTGGAGGGTAGGA 60.306 63.158 15.20 0.00 34.84 2.94
3894 4860 3.036429 GCTGCCAGTGGAGGGTAGG 62.036 68.421 15.20 0.00 38.43 3.18
3895 4861 2.249413 CTGCTGCCAGTGGAGGGTAG 62.249 65.000 15.20 6.75 40.65 3.18
3896 4862 2.203922 TGCTGCCAGTGGAGGGTA 60.204 61.111 15.20 0.00 0.00 3.69
3897 4863 3.644606 CTGCTGCCAGTGGAGGGT 61.645 66.667 15.20 0.00 34.31 4.34
3898 4864 3.324930 TCTGCTGCCAGTGGAGGG 61.325 66.667 15.20 2.54 40.09 4.30
3899 4865 2.268280 CTCTGCTGCCAGTGGAGG 59.732 66.667 15.20 5.33 40.09 4.30
3900 4866 1.079266 GACTCTGCTGCCAGTGGAG 60.079 63.158 15.20 8.78 40.09 3.86
3901 4867 2.587247 GGACTCTGCTGCCAGTGGA 61.587 63.158 15.20 0.00 40.09 4.02
3902 4868 2.046507 GGACTCTGCTGCCAGTGG 60.047 66.667 4.20 4.20 40.09 4.00
3903 4869 0.538584 TATGGACTCTGCTGCCAGTG 59.461 55.000 6.11 3.53 40.09 3.66
3904 4870 1.209019 CTTATGGACTCTGCTGCCAGT 59.791 52.381 0.00 0.00 40.09 4.00
3905 4871 1.474677 CCTTATGGACTCTGCTGCCAG 60.475 57.143 0.00 0.00 36.53 4.85
3906 4872 0.543277 CCTTATGGACTCTGCTGCCA 59.457 55.000 0.00 0.00 35.91 4.92
3907 4873 0.833287 TCCTTATGGACTCTGCTGCC 59.167 55.000 0.00 0.00 37.46 4.85
3908 4874 2.680339 GTTTCCTTATGGACTCTGCTGC 59.320 50.000 0.00 0.00 43.06 5.25
3909 4875 4.213564 AGTTTCCTTATGGACTCTGCTG 57.786 45.455 0.00 0.00 43.06 4.41
3910 4876 5.721960 TCTTAGTTTCCTTATGGACTCTGCT 59.278 40.000 0.00 0.00 43.06 4.24
3911 4877 5.978814 TCTTAGTTTCCTTATGGACTCTGC 58.021 41.667 0.00 0.00 43.06 4.26
3912 4878 7.411486 TCTCTTAGTTTCCTTATGGACTCTG 57.589 40.000 0.00 0.00 43.06 3.35
3913 4879 9.890915 ATATCTCTTAGTTTCCTTATGGACTCT 57.109 33.333 0.00 2.08 43.06 3.24
3922 4888 9.785982 GATGCCTTAATATCTCTTAGTTTCCTT 57.214 33.333 0.00 0.00 0.00 3.36
3923 4889 8.379331 GGATGCCTTAATATCTCTTAGTTTCCT 58.621 37.037 0.00 0.00 0.00 3.36
3924 4890 8.379331 AGGATGCCTTAATATCTCTTAGTTTCC 58.621 37.037 0.00 0.00 0.00 3.13
3925 4891 9.785982 AAGGATGCCTTAATATCTCTTAGTTTC 57.214 33.333 0.00 0.00 42.74 2.78
3939 4905 9.273016 CGATTCTCTATTAAAAGGATGCCTTAA 57.727 33.333 0.00 0.00 43.92 1.85
3940 4906 8.647796 TCGATTCTCTATTAAAAGGATGCCTTA 58.352 33.333 0.00 0.00 43.92 2.69
3942 4908 7.067496 TCGATTCTCTATTAAAAGGATGCCT 57.933 36.000 0.00 0.00 33.87 4.75
3943 4909 7.730364 TTCGATTCTCTATTAAAAGGATGCC 57.270 36.000 0.00 0.00 0.00 4.40
3944 4910 8.612619 TGTTTCGATTCTCTATTAAAAGGATGC 58.387 33.333 0.00 0.00 0.00 3.91
3962 4928 9.433317 CGCTATGTGTTAATATTTTGTTTCGAT 57.567 29.630 0.00 0.00 0.00 3.59
3963 4929 8.657729 TCGCTATGTGTTAATATTTTGTTTCGA 58.342 29.630 0.00 0.00 0.00 3.71
3964 4930 8.814733 TCGCTATGTGTTAATATTTTGTTTCG 57.185 30.769 0.00 0.00 0.00 3.46


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.