Multiple sequence alignment - TraesCS5D01G472000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G472000 chr5D 100.000 3849 0 0 1 3849 512533254 512537102 0.000000e+00 7108.0
1 TraesCS5D01G472000 chr5D 83.227 1562 221 29 1107 2658 537088077 537089607 0.000000e+00 1395.0
2 TraesCS5D01G472000 chr5D 82.834 1602 228 35 1107 2694 537162874 537161306 0.000000e+00 1391.0
3 TraesCS5D01G472000 chr5B 91.051 2503 110 55 522 2960 643460177 643462629 0.000000e+00 3277.0
4 TraesCS5D01G472000 chr5B 83.685 1563 215 31 1107 2658 677537454 677538987 0.000000e+00 1437.0
5 TraesCS5D01G472000 chr5B 83.568 1564 215 33 1107 2658 677545043 677543510 0.000000e+00 1426.0
6 TraesCS5D01G472000 chr5B 83.369 469 39 23 3401 3849 643462910 643463359 7.750000e-107 398.0
7 TraesCS5D01G472000 chr5B 84.971 346 22 15 54 384 643459756 643460086 1.330000e-84 324.0
8 TraesCS5D01G472000 chr5A 92.067 2269 116 35 918 3148 640724478 640726720 0.000000e+00 3134.0
9 TraesCS5D01G472000 chr5A 80.541 1480 250 35 1093 2553 670104866 670103406 0.000000e+00 1103.0
10 TraesCS5D01G472000 chr5A 89.541 392 21 11 525 900 640724030 640724417 2.690000e-131 479.0
11 TraesCS5D01G472000 chr5A 81.895 591 37 36 3272 3848 640726930 640727464 5.910000e-118 435.0
12 TraesCS5D01G472000 chr4A 83.611 1562 215 30 1107 2658 632989706 632991236 0.000000e+00 1428.0
13 TraesCS5D01G472000 chr4A 83.292 1598 220 35 1107 2689 632999852 632998287 0.000000e+00 1428.0
14 TraesCS5D01G472000 chr4A 81.117 1594 249 37 1089 2665 685834796 685836354 0.000000e+00 1229.0
15 TraesCS5D01G472000 chr2A 82.278 1580 239 33 1098 2663 18358267 18359819 0.000000e+00 1328.0
16 TraesCS5D01G472000 chr2A 75.686 510 99 17 1103 1607 18365292 18364803 8.320000e-57 231.0
17 TraesCS5D01G472000 chr4D 80.718 1587 254 36 1089 2658 479540650 479542201 0.000000e+00 1188.0
18 TraesCS5D01G472000 chr4D 80.563 1564 262 36 1090 2632 488468794 488470336 0.000000e+00 1166.0
19 TraesCS5D01G472000 chr4B 80.515 1591 264 35 1089 2665 606764704 606766262 0.000000e+00 1179.0
20 TraesCS5D01G472000 chr4B 79.833 1557 280 28 1093 2632 624862963 624861424 0.000000e+00 1105.0
21 TraesCS5D01G472000 chr2B 76.078 510 97 15 1103 1607 28729256 28728767 3.840000e-60 243.0
22 TraesCS5D01G472000 chr6D 97.436 39 1 0 3197 3235 312802081 312802119 2.480000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G472000 chr5D 512533254 512537102 3848 False 7108.000000 7108 100.000000 1 3849 1 chr5D.!!$F1 3848
1 TraesCS5D01G472000 chr5D 537088077 537089607 1530 False 1395.000000 1395 83.227000 1107 2658 1 chr5D.!!$F2 1551
2 TraesCS5D01G472000 chr5D 537161306 537162874 1568 True 1391.000000 1391 82.834000 1107 2694 1 chr5D.!!$R1 1587
3 TraesCS5D01G472000 chr5B 677537454 677538987 1533 False 1437.000000 1437 83.685000 1107 2658 1 chr5B.!!$F1 1551
4 TraesCS5D01G472000 chr5B 677543510 677545043 1533 True 1426.000000 1426 83.568000 1107 2658 1 chr5B.!!$R1 1551
5 TraesCS5D01G472000 chr5B 643459756 643463359 3603 False 1333.000000 3277 86.463667 54 3849 3 chr5B.!!$F2 3795
6 TraesCS5D01G472000 chr5A 640724030 640727464 3434 False 1349.333333 3134 87.834333 525 3848 3 chr5A.!!$F1 3323
7 TraesCS5D01G472000 chr5A 670103406 670104866 1460 True 1103.000000 1103 80.541000 1093 2553 1 chr5A.!!$R1 1460
8 TraesCS5D01G472000 chr4A 632989706 632991236 1530 False 1428.000000 1428 83.611000 1107 2658 1 chr4A.!!$F1 1551
9 TraesCS5D01G472000 chr4A 632998287 632999852 1565 True 1428.000000 1428 83.292000 1107 2689 1 chr4A.!!$R1 1582
10 TraesCS5D01G472000 chr4A 685834796 685836354 1558 False 1229.000000 1229 81.117000 1089 2665 1 chr4A.!!$F2 1576
11 TraesCS5D01G472000 chr2A 18358267 18359819 1552 False 1328.000000 1328 82.278000 1098 2663 1 chr2A.!!$F1 1565
12 TraesCS5D01G472000 chr4D 479540650 479542201 1551 False 1188.000000 1188 80.718000 1089 2658 1 chr4D.!!$F1 1569
13 TraesCS5D01G472000 chr4D 488468794 488470336 1542 False 1166.000000 1166 80.563000 1090 2632 1 chr4D.!!$F2 1542
14 TraesCS5D01G472000 chr4B 606764704 606766262 1558 False 1179.000000 1179 80.515000 1089 2665 1 chr4B.!!$F1 1576
15 TraesCS5D01G472000 chr4B 624861424 624862963 1539 True 1105.000000 1105 79.833000 1093 2632 1 chr4B.!!$R1 1539

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
301 311 0.032540 CAGCCATCGATCCATCACGA 59.967 55.0 0.0 0.0 42.49 4.35 F
517 545 0.035439 AGCCGTGTAAACCCATCCAG 60.035 55.0 0.0 0.0 0.00 3.86 F
829 873 0.107410 AACAACTGTCAGCCGGTTCA 60.107 50.0 1.9 0.0 40.79 3.18 F
1808 1905 0.755686 GGATGAAGATGCCCGAGACT 59.244 55.0 0.0 0.0 0.00 3.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2097 2233 1.435408 GCGCTCATCTTCTTGGCCTC 61.435 60.000 3.32 0.00 0.00 4.70 R
2107 2243 3.222855 CCTCGAGGGCGCTCATCT 61.223 66.667 27.95 0.84 37.46 2.90 R
2769 2923 2.293399 GAGTTTGAACGCTCCAACCATT 59.707 45.455 0.00 0.00 29.36 3.16 R
3786 4177 0.032540 CGGCATCCACATCGATCAGA 59.967 55.000 0.00 0.00 0.00 3.27 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 2.432119 GCTACTGCCCTCTCCCTAC 58.568 63.158 0.00 0.00 0.00 3.18
23 24 1.116536 GCTACTGCCCTCTCCCTACC 61.117 65.000 0.00 0.00 0.00 3.18
24 25 0.558712 CTACTGCCCTCTCCCTACCT 59.441 60.000 0.00 0.00 0.00 3.08
25 26 0.556747 TACTGCCCTCTCCCTACCTC 59.443 60.000 0.00 0.00 0.00 3.85
26 27 1.458588 CTGCCCTCTCCCTACCTCC 60.459 68.421 0.00 0.00 0.00 4.30
27 28 2.243774 CTGCCCTCTCCCTACCTCCA 62.244 65.000 0.00 0.00 0.00 3.86
28 29 1.237458 GCCCTCTCCCTACCTCCAT 59.763 63.158 0.00 0.00 0.00 3.41
29 30 0.834261 GCCCTCTCCCTACCTCCATC 60.834 65.000 0.00 0.00 0.00 3.51
30 31 0.178918 CCCTCTCCCTACCTCCATCC 60.179 65.000 0.00 0.00 0.00 3.51
31 32 0.863956 CCTCTCCCTACCTCCATCCT 59.136 60.000 0.00 0.00 0.00 3.24
32 33 1.203125 CCTCTCCCTACCTCCATCCTC 60.203 61.905 0.00 0.00 0.00 3.71
33 34 0.861155 TCTCCCTACCTCCATCCTCC 59.139 60.000 0.00 0.00 0.00 4.30
34 35 0.563173 CTCCCTACCTCCATCCTCCA 59.437 60.000 0.00 0.00 0.00 3.86
35 36 1.150986 CTCCCTACCTCCATCCTCCAT 59.849 57.143 0.00 0.00 0.00 3.41
36 37 1.150135 TCCCTACCTCCATCCTCCATC 59.850 57.143 0.00 0.00 0.00 3.51
37 38 1.261480 CCTACCTCCATCCTCCATCG 58.739 60.000 0.00 0.00 0.00 3.84
38 39 1.481428 CCTACCTCCATCCTCCATCGT 60.481 57.143 0.00 0.00 0.00 3.73
39 40 2.225041 CCTACCTCCATCCTCCATCGTA 60.225 54.545 0.00 0.00 0.00 3.43
40 41 2.002505 ACCTCCATCCTCCATCGTAG 57.997 55.000 0.00 0.00 0.00 3.51
41 42 0.605589 CCTCCATCCTCCATCGTAGC 59.394 60.000 0.00 0.00 0.00 3.58
42 43 1.332195 CTCCATCCTCCATCGTAGCA 58.668 55.000 0.00 0.00 0.00 3.49
43 44 1.898472 CTCCATCCTCCATCGTAGCAT 59.102 52.381 0.00 0.00 0.00 3.79
44 45 2.301296 CTCCATCCTCCATCGTAGCATT 59.699 50.000 0.00 0.00 0.00 3.56
45 46 2.300152 TCCATCCTCCATCGTAGCATTC 59.700 50.000 0.00 0.00 0.00 2.67
46 47 2.332104 CATCCTCCATCGTAGCATTCG 58.668 52.381 0.00 0.00 0.00 3.34
47 48 0.673985 TCCTCCATCGTAGCATTCGG 59.326 55.000 0.00 0.00 0.00 4.30
48 49 0.673985 CCTCCATCGTAGCATTCGGA 59.326 55.000 0.00 0.00 0.00 4.55
49 50 1.336332 CCTCCATCGTAGCATTCGGAG 60.336 57.143 0.00 0.00 39.82 4.63
50 51 1.338337 CTCCATCGTAGCATTCGGAGT 59.662 52.381 0.00 0.00 36.18 3.85
51 52 1.067060 TCCATCGTAGCATTCGGAGTG 59.933 52.381 0.00 0.00 0.00 3.51
52 53 1.067060 CCATCGTAGCATTCGGAGTGA 59.933 52.381 4.52 0.00 0.00 3.41
58 59 1.557099 AGCATTCGGAGTGAGTGGTA 58.443 50.000 4.52 0.00 42.41 3.25
69 70 0.901580 TGAGTGGTACCCCGAAGTCC 60.902 60.000 10.07 0.00 0.00 3.85
87 88 5.505181 AGTCCAGAAAAGCCAAGAGAATA 57.495 39.130 0.00 0.00 0.00 1.75
116 117 9.595357 CCAAATTTCGTCTTTCTTTCTAACTAC 57.405 33.333 0.00 0.00 0.00 2.73
119 120 9.760077 AATTTCGTCTTTCTTTCTAACTACTCA 57.240 29.630 0.00 0.00 0.00 3.41
120 121 9.760077 ATTTCGTCTTTCTTTCTAACTACTCAA 57.240 29.630 0.00 0.00 0.00 3.02
121 122 8.798748 TTCGTCTTTCTTTCTAACTACTCAAG 57.201 34.615 0.00 0.00 0.00 3.02
122 123 7.938715 TCGTCTTTCTTTCTAACTACTCAAGT 58.061 34.615 0.00 0.00 41.49 3.16
123 124 7.861372 TCGTCTTTCTTTCTAACTACTCAAGTG 59.139 37.037 0.00 0.00 38.88 3.16
124 125 7.115095 CGTCTTTCTTTCTAACTACTCAAGTGG 59.885 40.741 0.00 0.00 38.88 4.00
125 126 8.142551 GTCTTTCTTTCTAACTACTCAAGTGGA 58.857 37.037 0.09 0.00 38.88 4.02
142 143 0.179018 GGAGGCAAGTTGTGGTGAGT 60.179 55.000 4.48 0.00 0.00 3.41
143 144 0.947244 GAGGCAAGTTGTGGTGAGTG 59.053 55.000 4.48 0.00 0.00 3.51
147 148 1.597742 CAAGTTGTGGTGAGTGGAGG 58.402 55.000 0.00 0.00 0.00 4.30
148 149 0.179018 AAGTTGTGGTGAGTGGAGGC 60.179 55.000 0.00 0.00 0.00 4.70
149 150 1.148273 GTTGTGGTGAGTGGAGGCA 59.852 57.895 0.00 0.00 0.00 4.75
152 153 1.344953 TGTGGTGAGTGGAGGCAAGT 61.345 55.000 0.00 0.00 0.00 3.16
153 154 0.685097 GTGGTGAGTGGAGGCAAGTA 59.315 55.000 0.00 0.00 0.00 2.24
169 179 3.786635 CAAGTATCCTCCGGAACTGAAG 58.213 50.000 5.23 0.00 34.34 3.02
235 245 2.049156 CTGCCGCGAACTGACTCA 60.049 61.111 8.23 0.00 0.00 3.41
236 246 2.355837 TGCCGCGAACTGACTCAC 60.356 61.111 8.23 0.00 0.00 3.51
237 247 2.049063 GCCGCGAACTGACTCACT 60.049 61.111 8.23 0.00 0.00 3.41
238 248 2.375766 GCCGCGAACTGACTCACTG 61.376 63.158 8.23 0.00 0.00 3.66
242 252 1.692296 GCGAACTGACTCACTGACTC 58.308 55.000 0.00 0.00 0.00 3.36
247 257 1.339610 ACTGACTCACTGACTCACTGC 59.660 52.381 0.00 0.00 0.00 4.40
256 266 2.965831 ACTGACTCACTGCCTCTGTTTA 59.034 45.455 0.00 0.00 0.00 2.01
265 275 4.024556 CACTGCCTCTGTTTACTTGTCTTG 60.025 45.833 0.00 0.00 0.00 3.02
270 280 5.065988 GCCTCTGTTTACTTGTCTTGTTCAA 59.934 40.000 0.00 0.00 0.00 2.69
271 281 6.404293 GCCTCTGTTTACTTGTCTTGTTCAAA 60.404 38.462 0.00 0.00 0.00 2.69
272 282 7.535139 CCTCTGTTTACTTGTCTTGTTCAAAA 58.465 34.615 0.00 0.00 0.00 2.44
273 283 8.026607 CCTCTGTTTACTTGTCTTGTTCAAAAA 58.973 33.333 0.00 0.00 0.00 1.94
274 284 9.573133 CTCTGTTTACTTGTCTTGTTCAAAAAT 57.427 29.630 0.00 0.00 0.00 1.82
282 292 9.683069 ACTTGTCTTGTTCAAAAATATCACATC 57.317 29.630 0.00 0.00 0.00 3.06
301 311 0.032540 CAGCCATCGATCCATCACGA 59.967 55.000 0.00 0.00 42.49 4.35
303 313 1.138859 AGCCATCGATCCATCACGAAA 59.861 47.619 0.00 0.00 41.65 3.46
316 326 0.456142 CACGAAACTCGATCGCTCCA 60.456 55.000 11.09 0.00 43.74 3.86
334 344 2.052690 ATAGCCACGTCGCACTCCT 61.053 57.895 8.15 0.00 0.00 3.69
340 360 0.234884 CACGTCGCACTCCTTTTTCC 59.765 55.000 0.00 0.00 0.00 3.13
343 363 1.194772 CGTCGCACTCCTTTTTCCTTC 59.805 52.381 0.00 0.00 0.00 3.46
354 374 7.278646 CACTCCTTTTTCCTTCCTTTTCTTTTG 59.721 37.037 0.00 0.00 0.00 2.44
370 390 2.373335 TTTGAAAAGTAGCCCAGGCA 57.627 45.000 12.03 0.00 44.88 4.75
371 391 2.373335 TTGAAAAGTAGCCCAGGCAA 57.627 45.000 12.03 0.00 44.88 4.52
372 392 1.909700 TGAAAAGTAGCCCAGGCAAG 58.090 50.000 12.03 0.00 44.88 4.01
373 393 1.177401 GAAAAGTAGCCCAGGCAAGG 58.823 55.000 12.03 0.00 44.88 3.61
380 400 4.762016 CCCAGGCAAGGCAACATA 57.238 55.556 0.00 0.00 41.41 2.29
381 401 3.212377 CCCAGGCAAGGCAACATAT 57.788 52.632 0.00 0.00 41.41 1.78
382 402 1.488390 CCCAGGCAAGGCAACATATT 58.512 50.000 0.00 0.00 41.41 1.28
383 403 1.832998 CCCAGGCAAGGCAACATATTT 59.167 47.619 0.00 0.00 41.41 1.40
384 404 2.236893 CCCAGGCAAGGCAACATATTTT 59.763 45.455 0.00 0.00 41.41 1.82
385 405 3.307621 CCCAGGCAAGGCAACATATTTTT 60.308 43.478 0.00 0.00 41.41 1.94
435 463 9.852091 ATTTACACTTGCAACTAGTACTAGTAC 57.148 33.333 30.89 25.41 44.96 2.73
436 464 8.627208 TTACACTTGCAACTAGTACTAGTACT 57.373 34.615 32.39 32.39 44.96 2.73
437 465 7.143514 ACACTTGCAACTAGTACTAGTACTC 57.856 40.000 33.47 21.15 44.96 2.59
438 466 6.713903 ACACTTGCAACTAGTACTAGTACTCA 59.286 38.462 33.47 23.17 44.96 3.41
439 467 7.393796 ACACTTGCAACTAGTACTAGTACTCAT 59.606 37.037 33.47 21.84 44.96 2.90
464 492 1.860676 TCTCCGTTGAAAAGTCCACG 58.139 50.000 0.00 0.00 41.37 4.94
468 496 1.578583 CGTTGAAAAGTCCACGGTCT 58.421 50.000 0.00 0.00 38.81 3.85
484 512 1.228033 TCTCCCATGCATGCGATGG 60.228 57.895 28.27 28.27 40.25 3.51
485 513 1.228033 CTCCCATGCATGCGATGGA 60.228 57.895 32.95 26.08 42.81 3.41
486 514 1.228033 TCCCATGCATGCGATGGAG 60.228 57.895 32.95 25.80 42.81 3.86
487 515 1.527611 CCCATGCATGCGATGGAGT 60.528 57.895 32.95 7.89 42.81 3.85
488 516 1.652563 CCATGCATGCGATGGAGTG 59.347 57.895 30.01 14.32 42.81 3.51
489 517 1.008881 CATGCATGCGATGGAGTGC 60.009 57.895 14.93 0.00 38.05 4.40
490 518 2.540228 ATGCATGCGATGGAGTGCG 61.540 57.895 14.09 0.00 40.34 5.34
491 519 2.891936 GCATGCGATGGAGTGCGA 60.892 61.111 0.00 0.00 0.00 5.10
493 521 2.587194 ATGCGATGGAGTGCGAGC 60.587 61.111 0.00 0.00 0.00 5.03
496 524 2.951745 CGATGGAGTGCGAGCGTC 60.952 66.667 0.00 0.00 0.00 5.19
497 525 2.181777 GATGGAGTGCGAGCGTCA 59.818 61.111 0.00 0.00 0.00 4.35
498 526 1.446099 GATGGAGTGCGAGCGTCAA 60.446 57.895 0.00 0.00 0.00 3.18
499 527 1.416813 GATGGAGTGCGAGCGTCAAG 61.417 60.000 0.00 0.00 0.00 3.02
509 537 4.812308 GCGTCAAGCCGTGTAAAC 57.188 55.556 0.00 0.00 40.81 2.01
510 538 1.205820 GCGTCAAGCCGTGTAAACC 59.794 57.895 0.00 0.00 40.81 3.27
511 539 1.864176 CGTCAAGCCGTGTAAACCC 59.136 57.895 0.00 0.00 0.00 4.11
512 540 0.881159 CGTCAAGCCGTGTAAACCCA 60.881 55.000 0.00 0.00 0.00 4.51
513 541 1.530323 GTCAAGCCGTGTAAACCCAT 58.470 50.000 0.00 0.00 0.00 4.00
514 542 1.467342 GTCAAGCCGTGTAAACCCATC 59.533 52.381 0.00 0.00 0.00 3.51
515 543 0.808755 CAAGCCGTGTAAACCCATCC 59.191 55.000 0.00 0.00 0.00 3.51
516 544 0.402504 AAGCCGTGTAAACCCATCCA 59.597 50.000 0.00 0.00 0.00 3.41
517 545 0.035439 AGCCGTGTAAACCCATCCAG 60.035 55.000 0.00 0.00 0.00 3.86
518 546 1.029947 GCCGTGTAAACCCATCCAGG 61.030 60.000 0.00 0.00 37.03 4.45
561 589 2.124277 ACTTGCCCCGTATTTCTTCC 57.876 50.000 0.00 0.00 0.00 3.46
562 590 1.633945 ACTTGCCCCGTATTTCTTCCT 59.366 47.619 0.00 0.00 0.00 3.36
623 651 2.364324 GTTTCCTCTTTTCCAACCCCAC 59.636 50.000 0.00 0.00 0.00 4.61
634 663 2.469765 AACCCCACCCCCTCAACAG 61.470 63.158 0.00 0.00 0.00 3.16
678 707 8.676397 ATATCTCATCTCATCTCACCCAAATA 57.324 34.615 0.00 0.00 0.00 1.40
767 811 3.751175 TCTCGCCAACAAAACTGGAATAG 59.249 43.478 0.00 0.00 35.85 1.73
771 815 4.082245 CGCCAACAAAACTGGAATAGGATT 60.082 41.667 0.00 0.00 35.85 3.01
774 818 6.152831 GCCAACAAAACTGGAATAGGATTACT 59.847 38.462 0.00 0.00 35.85 2.24
779 823 8.387813 ACAAAACTGGAATAGGATTACTTACCA 58.612 33.333 0.00 0.00 0.00 3.25
780 824 8.674607 CAAAACTGGAATAGGATTACTTACCAC 58.325 37.037 0.00 0.00 0.00 4.16
794 838 1.121378 TACCACGCGAATATTCCCCA 58.879 50.000 15.93 0.00 0.00 4.96
829 873 0.107410 AACAACTGTCAGCCGGTTCA 60.107 50.000 1.90 0.00 40.79 3.18
959 1055 2.037251 GCCGCACTATTTATCTCCTCCA 59.963 50.000 0.00 0.00 0.00 3.86
965 1061 3.646637 ACTATTTATCTCCTCCAACCCGG 59.353 47.826 0.00 0.00 0.00 5.73
983 1079 4.824515 CGCCCTCCCTCCTCGTCT 62.825 72.222 0.00 0.00 0.00 4.18
986 1082 1.231641 CCCTCCCTCCTCGTCTCAT 59.768 63.158 0.00 0.00 0.00 2.90
1018 1114 9.054922 CCTAAAATCTCCAATCTTCTCATCTTC 57.945 37.037 0.00 0.00 0.00 2.87
1019 1115 9.835389 CTAAAATCTCCAATCTTCTCATCTTCT 57.165 33.333 0.00 0.00 0.00 2.85
1020 1116 8.735692 AAAATCTCCAATCTTCTCATCTTCTC 57.264 34.615 0.00 0.00 0.00 2.87
1023 1119 6.193504 TCTCCAATCTTCTCATCTTCTCTCA 58.806 40.000 0.00 0.00 0.00 3.27
1025 1121 6.638610 TCCAATCTTCTCATCTTCTCTCAAC 58.361 40.000 0.00 0.00 0.00 3.18
1026 1122 6.212187 TCCAATCTTCTCATCTTCTCTCAACA 59.788 38.462 0.00 0.00 0.00 3.33
1027 1123 6.535865 CCAATCTTCTCATCTTCTCTCAACAG 59.464 42.308 0.00 0.00 0.00 3.16
1028 1124 5.657826 TCTTCTCATCTTCTCTCAACAGG 57.342 43.478 0.00 0.00 0.00 4.00
1029 1125 5.328565 TCTTCTCATCTTCTCTCAACAGGA 58.671 41.667 0.00 0.00 0.00 3.86
1030 1126 5.777223 TCTTCTCATCTTCTCTCAACAGGAA 59.223 40.000 0.00 0.00 0.00 3.36
1036 1132 2.417339 TCTCTCAACAGGAACGAACG 57.583 50.000 0.00 0.00 0.00 3.95
1042 1138 2.031069 TCAACAGGAACGAACGAGAGAG 60.031 50.000 0.14 0.00 0.00 3.20
1086 1182 2.437281 GAGATCAATCAAGGAGGGCTCA 59.563 50.000 0.00 0.00 0.00 4.26
1696 1793 4.832608 GCCCGCCTACAAGGACGG 62.833 72.222 16.83 16.83 47.00 4.79
1808 1905 0.755686 GGATGAAGATGCCCGAGACT 59.244 55.000 0.00 0.00 0.00 3.24
2089 2225 2.002586 CATCTTCACGGCGATCAACTT 58.997 47.619 16.62 0.00 0.00 2.66
2107 2243 1.204786 TTGATCCCCGAGGCCAAGAA 61.205 55.000 5.01 0.00 0.00 2.52
2717 2853 2.421739 GTGCCCGTGTGAGACAGT 59.578 61.111 0.00 0.00 0.00 3.55
2719 2855 2.048127 GCCCGTGTGAGACAGTCC 60.048 66.667 0.00 0.00 0.00 3.85
2763 2917 4.763793 CAGGTTTGGATGGATGTATGGATC 59.236 45.833 0.00 0.00 0.00 3.36
2764 2918 4.416513 AGGTTTGGATGGATGTATGGATCA 59.583 41.667 0.00 0.00 0.00 2.92
2769 2923 8.859090 GTTTGGATGGATGTATGGATCATTTTA 58.141 33.333 0.00 0.00 0.00 1.52
2782 2936 4.097892 GGATCATTTTAATGGTTGGAGCGT 59.902 41.667 0.00 0.00 37.03 5.07
2784 2938 5.054390 TCATTTTAATGGTTGGAGCGTTC 57.946 39.130 2.85 0.00 37.03 3.95
2798 2953 1.412710 AGCGTTCAAACTCAGGAGTCA 59.587 47.619 1.86 0.00 41.58 3.41
2799 2954 1.795286 GCGTTCAAACTCAGGAGTCAG 59.205 52.381 1.86 0.00 41.58 3.51
2800 2955 2.545952 GCGTTCAAACTCAGGAGTCAGA 60.546 50.000 1.86 1.45 41.58 3.27
2801 2956 3.312828 CGTTCAAACTCAGGAGTCAGAG 58.687 50.000 1.86 9.55 41.58 3.35
2802 2957 3.243569 CGTTCAAACTCAGGAGTCAGAGT 60.244 47.826 10.67 10.67 46.45 3.24
2803 2958 4.023107 CGTTCAAACTCAGGAGTCAGAGTA 60.023 45.833 15.33 1.24 43.88 2.59
2804 2959 5.224135 GTTCAAACTCAGGAGTCAGAGTAC 58.776 45.833 15.33 8.25 43.88 2.73
2805 2960 4.470602 TCAAACTCAGGAGTCAGAGTACA 58.529 43.478 15.33 3.31 43.88 2.90
2806 2961 4.893524 TCAAACTCAGGAGTCAGAGTACAA 59.106 41.667 15.33 4.34 43.88 2.41
2807 2962 5.010112 TCAAACTCAGGAGTCAGAGTACAAG 59.990 44.000 15.33 8.03 43.88 3.16
2808 2963 4.374689 ACTCAGGAGTCAGAGTACAAGA 57.625 45.455 13.88 0.00 42.92 3.02
2848 3021 5.411669 GTCGAGTTGTCCAGGTTAATTCATT 59.588 40.000 0.00 0.00 0.00 2.57
2863 3036 2.672961 TCATTAGAGTTGCTGGTCGG 57.327 50.000 0.00 0.00 0.00 4.79
2892 3070 6.384305 AGCAGTAATAGGGAGTGATACAAGTT 59.616 38.462 0.00 0.00 0.00 2.66
2896 3074 9.710818 AGTAATAGGGAGTGATACAAGTTAAGA 57.289 33.333 0.00 0.00 0.00 2.10
2897 3075 9.968870 GTAATAGGGAGTGATACAAGTTAAGAG 57.031 37.037 0.00 0.00 0.00 2.85
2898 3076 8.611051 AATAGGGAGTGATACAAGTTAAGAGT 57.389 34.615 0.00 0.00 0.00 3.24
2965 3149 4.320421 GGAAAACTTTCATGCATTTTGGCC 60.320 41.667 0.00 0.00 38.92 5.36
3015 3199 7.586747 ACAGTACTAAATTCTATCGCTAGCTC 58.413 38.462 13.93 0.00 0.00 4.09
3019 3203 7.148355 ACTAAATTCTATCGCTAGCTCCTAC 57.852 40.000 13.93 0.00 0.00 3.18
3034 3223 5.530243 AGCTCCTACTACCTACCTTGAAAT 58.470 41.667 0.00 0.00 0.00 2.17
3087 3276 8.615878 ATTAATTTTCACACAGTAGCTACACA 57.384 30.769 25.28 0.00 0.00 3.72
3088 3277 5.924475 ATTTTCACACAGTAGCTACACAC 57.076 39.130 25.28 0.87 0.00 3.82
3089 3278 2.699251 TCACACAGTAGCTACACACG 57.301 50.000 25.28 12.79 0.00 4.49
3097 3286 6.988580 ACACAGTAGCTACACACGAGTATATA 59.011 38.462 25.28 0.00 0.00 0.86
3125 3314 9.801714 GTTGACTGAATTTGCAATTTGATTAAG 57.198 29.630 11.11 7.68 0.00 1.85
3148 3337 1.002366 CGATTTTGTGAGAGGAGCGG 58.998 55.000 0.00 0.00 0.00 5.52
3149 3338 1.673033 CGATTTTGTGAGAGGAGCGGT 60.673 52.381 0.00 0.00 0.00 5.68
3150 3339 1.734465 GATTTTGTGAGAGGAGCGGTG 59.266 52.381 0.00 0.00 0.00 4.94
3152 3341 1.118965 TTTGTGAGAGGAGCGGTGGA 61.119 55.000 0.00 0.00 0.00 4.02
3153 3342 1.536073 TTGTGAGAGGAGCGGTGGAG 61.536 60.000 0.00 0.00 0.00 3.86
3154 3343 2.363018 TGAGAGGAGCGGTGGAGG 60.363 66.667 0.00 0.00 0.00 4.30
3160 3349 1.682684 GGAGCGGTGGAGGAAGAGA 60.683 63.158 0.00 0.00 0.00 3.10
3161 3350 1.258445 GGAGCGGTGGAGGAAGAGAA 61.258 60.000 0.00 0.00 0.00 2.87
3163 3352 0.610687 AGCGGTGGAGGAAGAGAAAG 59.389 55.000 0.00 0.00 0.00 2.62
3164 3353 0.391793 GCGGTGGAGGAAGAGAAAGG 60.392 60.000 0.00 0.00 0.00 3.11
3167 3356 1.557371 GGTGGAGGAAGAGAAAGGAGG 59.443 57.143 0.00 0.00 0.00 4.30
3168 3357 1.557371 GTGGAGGAAGAGAAAGGAGGG 59.443 57.143 0.00 0.00 0.00 4.30
3170 3359 0.544223 GAGGAAGAGAAAGGAGGGCC 59.456 60.000 0.00 0.00 0.00 5.80
3172 3361 0.922626 GGAAGAGAAAGGAGGGCCAT 59.077 55.000 6.18 0.00 36.29 4.40
3174 3363 2.373224 GAAGAGAAAGGAGGGCCATTG 58.627 52.381 6.18 0.00 36.29 2.82
3176 3365 0.625849 GAGAAAGGAGGGCCATTGGA 59.374 55.000 6.18 0.00 36.29 3.53
3177 3366 1.216427 GAGAAAGGAGGGCCATTGGAT 59.784 52.381 6.18 0.00 36.29 3.41
3178 3367 1.216427 AGAAAGGAGGGCCATTGGATC 59.784 52.381 6.18 0.63 36.29 3.36
3179 3368 1.216427 GAAAGGAGGGCCATTGGATCT 59.784 52.381 6.18 2.21 36.29 2.75
3180 3369 1.312884 AAGGAGGGCCATTGGATCTT 58.687 50.000 6.18 0.00 36.29 2.40
3181 3370 2.212752 AGGAGGGCCATTGGATCTTA 57.787 50.000 6.18 0.00 36.29 2.10
3182 3371 2.502745 AGGAGGGCCATTGGATCTTAA 58.497 47.619 6.18 0.00 36.29 1.85
3183 3372 2.175715 AGGAGGGCCATTGGATCTTAAC 59.824 50.000 6.18 0.00 36.29 2.01
3184 3373 2.587522 GAGGGCCATTGGATCTTAACC 58.412 52.381 6.18 0.00 0.00 2.85
3185 3374 1.217942 AGGGCCATTGGATCTTAACCC 59.782 52.381 6.18 5.52 36.29 4.11
3186 3375 1.063266 GGGCCATTGGATCTTAACCCA 60.063 52.381 6.95 0.00 36.07 4.51
3187 3376 2.625617 GGGCCATTGGATCTTAACCCAA 60.626 50.000 6.95 0.00 45.40 4.12
3192 3381 3.756082 TTGGATCTTAACCCAATGGCT 57.244 42.857 0.00 0.00 37.50 4.75
3193 3382 4.871871 TTGGATCTTAACCCAATGGCTA 57.128 40.909 0.00 0.00 37.50 3.93
3194 3383 4.437682 TGGATCTTAACCCAATGGCTAG 57.562 45.455 0.00 0.00 33.59 3.42
3195 3384 3.138283 TGGATCTTAACCCAATGGCTAGG 59.862 47.826 0.00 0.00 33.59 3.02
3196 3385 3.394606 GGATCTTAACCCAATGGCTAGGA 59.605 47.826 0.00 0.00 33.59 2.94
3197 3386 4.141251 GGATCTTAACCCAATGGCTAGGAA 60.141 45.833 0.00 0.00 33.59 3.36
3198 3387 4.938575 TCTTAACCCAATGGCTAGGAAA 57.061 40.909 0.00 0.00 33.59 3.13
3199 3388 5.263872 TCTTAACCCAATGGCTAGGAAAA 57.736 39.130 0.00 0.00 33.59 2.29
3200 3389 5.837829 TCTTAACCCAATGGCTAGGAAAAT 58.162 37.500 0.00 0.00 33.59 1.82
3201 3390 5.891551 TCTTAACCCAATGGCTAGGAAAATC 59.108 40.000 0.00 0.00 33.59 2.17
3202 3391 2.654863 ACCCAATGGCTAGGAAAATCG 58.345 47.619 0.00 0.00 33.59 3.34
3203 3392 2.241176 ACCCAATGGCTAGGAAAATCGA 59.759 45.455 0.00 0.00 33.59 3.59
3204 3393 2.618709 CCCAATGGCTAGGAAAATCGAC 59.381 50.000 0.00 0.00 0.00 4.20
3205 3394 3.545703 CCAATGGCTAGGAAAATCGACT 58.454 45.455 0.00 0.00 0.00 4.18
3206 3395 3.947834 CCAATGGCTAGGAAAATCGACTT 59.052 43.478 0.00 0.00 0.00 3.01
3207 3396 5.123227 CCAATGGCTAGGAAAATCGACTTA 58.877 41.667 0.00 0.00 0.00 2.24
3208 3397 5.007724 CCAATGGCTAGGAAAATCGACTTAC 59.992 44.000 0.00 0.00 0.00 2.34
3209 3398 4.133013 TGGCTAGGAAAATCGACTTACC 57.867 45.455 0.00 0.00 0.00 2.85
3210 3399 3.118519 TGGCTAGGAAAATCGACTTACCC 60.119 47.826 0.00 0.00 0.00 3.69
3211 3400 3.118519 GGCTAGGAAAATCGACTTACCCA 60.119 47.826 0.00 0.00 0.00 4.51
3212 3401 4.510571 GCTAGGAAAATCGACTTACCCAA 58.489 43.478 0.00 0.00 0.00 4.12
3213 3402 4.939439 GCTAGGAAAATCGACTTACCCAAA 59.061 41.667 0.00 0.00 0.00 3.28
3214 3403 5.413523 GCTAGGAAAATCGACTTACCCAAAA 59.586 40.000 0.00 0.00 0.00 2.44
3215 3404 6.095021 GCTAGGAAAATCGACTTACCCAAAAT 59.905 38.462 0.00 0.00 0.00 1.82
3216 3405 7.281549 GCTAGGAAAATCGACTTACCCAAAATA 59.718 37.037 0.00 0.00 0.00 1.40
3217 3406 9.169592 CTAGGAAAATCGACTTACCCAAAATAA 57.830 33.333 0.00 0.00 0.00 1.40
3218 3407 8.411991 AGGAAAATCGACTTACCCAAAATAAA 57.588 30.769 0.00 0.00 0.00 1.40
3219 3408 9.031537 AGGAAAATCGACTTACCCAAAATAAAT 57.968 29.630 0.00 0.00 0.00 1.40
3220 3409 9.647797 GGAAAATCGACTTACCCAAAATAAATT 57.352 29.630 0.00 0.00 0.00 1.82
3224 3413 9.855021 AATCGACTTACCCAAAATAAATTTCAG 57.145 29.630 0.00 0.00 0.00 3.02
3225 3414 7.822658 TCGACTTACCCAAAATAAATTTCAGG 58.177 34.615 0.00 3.38 0.00 3.86
3226 3415 7.449086 TCGACTTACCCAAAATAAATTTCAGGT 59.551 33.333 11.77 11.77 38.15 4.00
3227 3416 8.732531 CGACTTACCCAAAATAAATTTCAGGTA 58.267 33.333 0.00 10.36 36.79 3.08
3229 3418 8.528643 ACTTACCCAAAATAAATTTCAGGTAGC 58.471 33.333 0.00 0.00 37.98 3.58
3230 3419 6.294361 ACCCAAAATAAATTTCAGGTAGCC 57.706 37.500 0.00 0.00 34.93 3.93
3231 3420 5.782845 ACCCAAAATAAATTTCAGGTAGCCA 59.217 36.000 0.00 0.00 34.93 4.75
3232 3421 6.070824 ACCCAAAATAAATTTCAGGTAGCCAG 60.071 38.462 0.00 0.00 34.93 4.85
3233 3422 6.070824 CCCAAAATAAATTTCAGGTAGCCAGT 60.071 38.462 0.00 0.00 0.00 4.00
3234 3423 7.035612 CCAAAATAAATTTCAGGTAGCCAGTC 58.964 38.462 0.00 0.00 0.00 3.51
3235 3424 7.093771 CCAAAATAAATTTCAGGTAGCCAGTCT 60.094 37.037 0.00 0.00 0.00 3.24
3236 3425 8.306761 CAAAATAAATTTCAGGTAGCCAGTCTT 58.693 33.333 0.00 0.00 0.00 3.01
3237 3426 9.528489 AAAATAAATTTCAGGTAGCCAGTCTTA 57.472 29.630 0.00 0.00 0.00 2.10
3238 3427 8.507524 AATAAATTTCAGGTAGCCAGTCTTAC 57.492 34.615 0.00 0.00 0.00 2.34
3242 3431 4.803098 TCAGGTAGCCAGTCTTACTTTC 57.197 45.455 0.00 0.00 0.00 2.62
3246 3435 4.777896 AGGTAGCCAGTCTTACTTTCATCA 59.222 41.667 0.00 0.00 0.00 3.07
3263 3452 2.933495 TCAGCCGTGACATGTACTAC 57.067 50.000 0.00 0.00 0.00 2.73
3264 3453 2.443416 TCAGCCGTGACATGTACTACT 58.557 47.619 0.00 0.00 0.00 2.57
3266 3455 3.626217 TCAGCCGTGACATGTACTACTAG 59.374 47.826 0.00 0.00 0.00 2.57
3267 3456 2.358267 AGCCGTGACATGTACTACTAGC 59.642 50.000 0.00 4.97 0.00 3.42
3270 3474 3.377485 CCGTGACATGTACTACTAGCAGT 59.623 47.826 0.00 0.31 0.00 4.40
3302 3659 1.002502 GGGCTGGAAAAGGTAGCGT 60.003 57.895 0.00 0.00 38.31 5.07
3304 3661 0.036294 GGCTGGAAAAGGTAGCGTCT 60.036 55.000 0.00 0.00 38.31 4.18
3341 3698 4.030913 ACAAGTTTCCGATGATCTCCCTA 58.969 43.478 0.00 0.00 0.00 3.53
3342 3699 4.469945 ACAAGTTTCCGATGATCTCCCTAA 59.530 41.667 0.00 0.00 0.00 2.69
3381 3741 1.069568 AGATGAGACGATCGATCACGC 60.070 52.381 24.34 18.14 39.58 5.34
3435 3801 2.105477 ACAAGAATCTGGATGGATCGGG 59.895 50.000 0.00 0.00 0.00 5.14
3450 3824 2.273776 GGGGCAGCTTCCTTCCTC 59.726 66.667 1.39 0.00 0.00 3.71
3457 3831 0.687354 AGCTTCCTTCCTCGCTTCAA 59.313 50.000 0.00 0.00 0.00 2.69
3481 3856 2.483876 CACACTTGGTCGACTTGTGAT 58.516 47.619 28.34 16.90 40.02 3.06
3490 3866 1.726248 TCGACTTGTGATGCGATGTTG 59.274 47.619 0.00 0.00 0.00 3.33
3518 3894 3.433882 TTTGATGACAAGTACCGGTTGGT 60.434 43.478 15.04 6.07 43.56 3.67
3598 3978 2.094659 GCGACGTGCATGTGCTAGT 61.095 57.895 18.17 6.14 45.45 2.57
3608 3988 1.741706 CATGTGCTAGTTTCCTGCTGG 59.258 52.381 2.58 2.58 0.00 4.85
3655 4035 1.456705 GGTTTCACACAGGGGCCAA 60.457 57.895 4.39 0.00 0.00 4.52
3708 4092 1.613255 CGGCCTACCAAGGTTGAACAT 60.613 52.381 0.00 0.00 45.64 2.71
3721 4105 1.280982 TGAACATCTTGATCGCTCGC 58.719 50.000 0.00 0.00 0.00 5.03
3738 4125 3.499737 CCCGCGCTAGGCAACAAG 61.500 66.667 5.56 0.00 43.84 3.16
3757 4144 2.436824 GGGACCTCGCTTTCTGCC 60.437 66.667 0.00 0.00 38.78 4.85
3806 4197 0.249615 CTGATCGATGTGGATGCCGT 60.250 55.000 0.54 0.00 0.00 5.68
3807 4198 0.177836 TGATCGATGTGGATGCCGTT 59.822 50.000 0.54 0.00 0.00 4.44
3808 4199 0.583438 GATCGATGTGGATGCCGTTG 59.417 55.000 0.54 0.00 0.00 4.10
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 0.558712 AGGTAGGGAGAGGGCAGTAG 59.441 60.000 0.00 0.00 0.00 2.57
6 7 0.556747 GAGGTAGGGAGAGGGCAGTA 59.443 60.000 0.00 0.00 0.00 2.74
7 8 1.311747 GAGGTAGGGAGAGGGCAGT 59.688 63.158 0.00 0.00 0.00 4.40
8 9 1.458588 GGAGGTAGGGAGAGGGCAG 60.459 68.421 0.00 0.00 0.00 4.85
9 10 1.603633 ATGGAGGTAGGGAGAGGGCA 61.604 60.000 0.00 0.00 0.00 5.36
10 11 0.834261 GATGGAGGTAGGGAGAGGGC 60.834 65.000 0.00 0.00 0.00 5.19
11 12 0.178918 GGATGGAGGTAGGGAGAGGG 60.179 65.000 0.00 0.00 0.00 4.30
12 13 0.863956 AGGATGGAGGTAGGGAGAGG 59.136 60.000 0.00 0.00 0.00 3.69
13 14 1.203125 GGAGGATGGAGGTAGGGAGAG 60.203 61.905 0.00 0.00 0.00 3.20
14 15 0.861155 GGAGGATGGAGGTAGGGAGA 59.139 60.000 0.00 0.00 0.00 3.71
15 16 0.563173 TGGAGGATGGAGGTAGGGAG 59.437 60.000 0.00 0.00 0.00 4.30
16 17 1.150135 GATGGAGGATGGAGGTAGGGA 59.850 57.143 0.00 0.00 0.00 4.20
17 18 1.650528 GATGGAGGATGGAGGTAGGG 58.349 60.000 0.00 0.00 0.00 3.53
18 19 1.261480 CGATGGAGGATGGAGGTAGG 58.739 60.000 0.00 0.00 0.00 3.18
19 20 2.002505 ACGATGGAGGATGGAGGTAG 57.997 55.000 0.00 0.00 0.00 3.18
20 21 2.818216 GCTACGATGGAGGATGGAGGTA 60.818 54.545 0.00 0.00 0.00 3.08
21 22 2.002505 CTACGATGGAGGATGGAGGT 57.997 55.000 0.00 0.00 0.00 3.85
22 23 0.605589 GCTACGATGGAGGATGGAGG 59.394 60.000 0.00 0.00 0.00 4.30
23 24 1.332195 TGCTACGATGGAGGATGGAG 58.668 55.000 0.00 0.00 0.00 3.86
24 25 2.015456 ATGCTACGATGGAGGATGGA 57.985 50.000 0.00 0.00 0.00 3.41
25 26 2.693069 GAATGCTACGATGGAGGATGG 58.307 52.381 0.00 0.00 0.00 3.51
26 27 2.332104 CGAATGCTACGATGGAGGATG 58.668 52.381 0.00 0.00 0.00 3.51
27 28 1.273606 CCGAATGCTACGATGGAGGAT 59.726 52.381 0.00 0.00 0.00 3.24
28 29 0.673985 CCGAATGCTACGATGGAGGA 59.326 55.000 0.00 0.00 0.00 3.71
29 30 0.673985 TCCGAATGCTACGATGGAGG 59.326 55.000 0.00 0.00 0.00 4.30
30 31 1.338337 ACTCCGAATGCTACGATGGAG 59.662 52.381 4.60 4.60 46.58 3.86
31 32 1.067060 CACTCCGAATGCTACGATGGA 59.933 52.381 0.00 0.00 0.00 3.41
32 33 1.067060 TCACTCCGAATGCTACGATGG 59.933 52.381 0.00 0.00 0.00 3.51
33 34 2.223595 ACTCACTCCGAATGCTACGATG 60.224 50.000 0.00 0.00 0.00 3.84
34 35 2.025155 ACTCACTCCGAATGCTACGAT 58.975 47.619 0.00 0.00 0.00 3.73
35 36 1.132453 CACTCACTCCGAATGCTACGA 59.868 52.381 0.00 0.00 0.00 3.43
36 37 1.550065 CACTCACTCCGAATGCTACG 58.450 55.000 0.00 0.00 0.00 3.51
37 38 1.204941 ACCACTCACTCCGAATGCTAC 59.795 52.381 0.00 0.00 0.00 3.58
38 39 1.557099 ACCACTCACTCCGAATGCTA 58.443 50.000 0.00 0.00 0.00 3.49
39 40 1.204941 GTACCACTCACTCCGAATGCT 59.795 52.381 0.00 0.00 0.00 3.79
40 41 1.641577 GTACCACTCACTCCGAATGC 58.358 55.000 0.00 0.00 0.00 3.56
41 42 2.295253 GGTACCACTCACTCCGAATG 57.705 55.000 7.15 0.00 0.00 2.67
58 59 0.250770 GCTTTTCTGGACTTCGGGGT 60.251 55.000 0.00 0.00 0.00 4.95
69 70 6.764308 TGGAATATTCTCTTGGCTTTTCTG 57.236 37.500 14.95 0.00 0.00 3.02
87 88 9.678941 GTTAGAAAGAAAGACGAAATTTGGAAT 57.321 29.630 7.24 0.00 0.00 3.01
111 112 2.706190 ACTTGCCTCCACTTGAGTAGTT 59.294 45.455 0.00 0.00 39.65 2.24
116 117 1.605710 CACAACTTGCCTCCACTTGAG 59.394 52.381 0.00 0.00 41.07 3.02
117 118 1.679139 CACAACTTGCCTCCACTTGA 58.321 50.000 0.00 0.00 0.00 3.02
118 119 0.670162 CCACAACTTGCCTCCACTTG 59.330 55.000 0.00 0.00 0.00 3.16
119 120 0.258774 ACCACAACTTGCCTCCACTT 59.741 50.000 0.00 0.00 0.00 3.16
120 121 0.466189 CACCACAACTTGCCTCCACT 60.466 55.000 0.00 0.00 0.00 4.00
121 122 0.465460 TCACCACAACTTGCCTCCAC 60.465 55.000 0.00 0.00 0.00 4.02
122 123 0.179020 CTCACCACAACTTGCCTCCA 60.179 55.000 0.00 0.00 0.00 3.86
123 124 0.179018 ACTCACCACAACTTGCCTCC 60.179 55.000 0.00 0.00 0.00 4.30
124 125 0.947244 CACTCACCACAACTTGCCTC 59.053 55.000 0.00 0.00 0.00 4.70
125 126 0.466189 CCACTCACCACAACTTGCCT 60.466 55.000 0.00 0.00 0.00 4.75
126 127 0.465460 TCCACTCACCACAACTTGCC 60.465 55.000 0.00 0.00 0.00 4.52
169 179 0.038801 GCCTGCCTTTTGAGTTGAGC 60.039 55.000 0.00 0.00 0.00 4.26
222 232 0.039978 AGTCAGTGAGTCAGTTCGCG 60.040 55.000 0.00 0.00 32.92 5.87
235 245 1.418334 AACAGAGGCAGTGAGTCAGT 58.582 50.000 0.00 0.00 0.00 3.41
236 246 2.540265 AAACAGAGGCAGTGAGTCAG 57.460 50.000 0.00 0.00 0.00 3.51
237 247 2.965831 AGTAAACAGAGGCAGTGAGTCA 59.034 45.455 0.00 0.00 0.00 3.41
238 248 3.669251 AGTAAACAGAGGCAGTGAGTC 57.331 47.619 0.00 0.00 0.00 3.36
242 252 3.733337 AGACAAGTAAACAGAGGCAGTG 58.267 45.455 0.00 0.00 0.00 3.66
247 257 6.677781 TTGAACAAGACAAGTAAACAGAGG 57.322 37.500 0.00 0.00 0.00 3.69
256 266 9.683069 GATGTGATATTTTTGAACAAGACAAGT 57.317 29.630 0.00 0.00 0.00 3.16
265 275 6.415867 CGATGGCTGATGTGATATTTTTGAAC 59.584 38.462 0.00 0.00 0.00 3.18
270 280 5.413833 GGATCGATGGCTGATGTGATATTTT 59.586 40.000 0.54 0.00 0.00 1.82
271 281 4.940046 GGATCGATGGCTGATGTGATATTT 59.060 41.667 0.54 0.00 0.00 1.40
272 282 4.019950 TGGATCGATGGCTGATGTGATATT 60.020 41.667 0.54 0.00 0.00 1.28
273 283 3.516700 TGGATCGATGGCTGATGTGATAT 59.483 43.478 0.54 0.00 0.00 1.63
274 284 2.899256 TGGATCGATGGCTGATGTGATA 59.101 45.455 0.54 0.00 0.00 2.15
279 289 2.074576 GTGATGGATCGATGGCTGATG 58.925 52.381 0.54 0.00 0.00 3.07
282 292 0.032540 TCGTGATGGATCGATGGCTG 59.967 55.000 0.54 0.00 0.00 4.85
301 311 2.141535 GCTATGGAGCGATCGAGTTT 57.858 50.000 21.57 0.00 39.39 2.66
316 326 1.605058 AAGGAGTGCGACGTGGCTAT 61.605 55.000 23.24 11.66 0.00 2.97
354 374 1.177401 CCTTGCCTGGGCTACTTTTC 58.823 55.000 13.05 0.00 42.51 2.29
396 416 9.717942 TTGCAAGTGTAAATATATTGCCTTTTT 57.282 25.926 0.00 0.00 44.30 1.94
397 417 9.150348 GTTGCAAGTGTAAATATATTGCCTTTT 57.850 29.630 0.00 0.00 44.30 2.27
398 418 8.531146 AGTTGCAAGTGTAAATATATTGCCTTT 58.469 29.630 5.84 0.00 44.30 3.11
450 478 1.871676 GGAGACCGTGGACTTTTCAAC 59.128 52.381 0.00 0.00 0.00 3.18
484 512 3.482783 GGCTTGACGCTCGCACTC 61.483 66.667 0.00 0.00 39.13 3.51
489 517 1.279527 TTTACACGGCTTGACGCTCG 61.280 55.000 0.00 0.00 39.13 5.03
490 518 0.163146 GTTTACACGGCTTGACGCTC 59.837 55.000 0.00 0.00 39.13 5.03
491 519 1.226030 GGTTTACACGGCTTGACGCT 61.226 55.000 0.00 0.00 39.13 5.07
493 521 0.881159 TGGGTTTACACGGCTTGACG 60.881 55.000 0.00 0.00 40.31 4.35
494 522 1.467342 GATGGGTTTACACGGCTTGAC 59.533 52.381 0.00 0.00 0.00 3.18
495 523 1.612199 GGATGGGTTTACACGGCTTGA 60.612 52.381 0.00 0.00 0.00 3.02
496 524 0.808755 GGATGGGTTTACACGGCTTG 59.191 55.000 0.00 0.00 0.00 4.01
497 525 0.402504 TGGATGGGTTTACACGGCTT 59.597 50.000 0.00 0.00 0.00 4.35
498 526 0.035439 CTGGATGGGTTTACACGGCT 60.035 55.000 0.00 0.00 0.00 5.52
499 527 1.029947 CCTGGATGGGTTTACACGGC 61.030 60.000 0.00 0.00 0.00 5.68
500 528 3.168773 CCTGGATGGGTTTACACGG 57.831 57.895 0.00 0.00 0.00 4.94
511 539 3.866582 GACGGGGCTCCCTGGATG 61.867 72.222 17.58 0.46 46.47 3.51
512 540 4.414956 TGACGGGGCTCCCTGGAT 62.415 66.667 17.58 0.00 46.47 3.41
518 546 4.736896 GTGACGTGACGGGGCTCC 62.737 72.222 10.66 0.00 0.00 4.70
519 547 4.736896 GGTGACGTGACGGGGCTC 62.737 72.222 10.66 0.00 0.00 4.70
623 651 1.903404 GTTGTGGCTGTTGAGGGGG 60.903 63.158 0.00 0.00 0.00 5.40
708 741 9.935682 TGCATTTTCGCTTTCTAATTCTAATAG 57.064 29.630 0.00 0.00 0.00 1.73
714 747 8.899776 CATATCTGCATTTTCGCTTTCTAATTC 58.100 33.333 0.00 0.00 0.00 2.17
715 748 8.623903 TCATATCTGCATTTTCGCTTTCTAATT 58.376 29.630 0.00 0.00 0.00 1.40
767 811 5.119743 GGAATATTCGCGTGGTAAGTAATCC 59.880 44.000 5.77 0.00 0.00 3.01
771 815 3.243839 GGGGAATATTCGCGTGGTAAGTA 60.244 47.826 22.02 0.00 40.65 2.24
774 818 1.485480 TGGGGAATATTCGCGTGGTAA 59.515 47.619 22.02 0.00 40.65 2.85
779 823 0.393077 CTCCTGGGGAATATTCGCGT 59.607 55.000 22.02 0.00 40.65 6.01
780 824 0.679505 TCTCCTGGGGAATATTCGCG 59.320 55.000 22.02 0.00 40.65 5.87
829 873 4.309099 TGTTACGATTTTACTGGCGAGTT 58.691 39.130 6.71 0.00 33.21 3.01
980 1076 4.445019 GGAGATTTTAGGGTGGGATGAGAC 60.445 50.000 0.00 0.00 0.00 3.36
983 1079 3.469859 TGGAGATTTTAGGGTGGGATGA 58.530 45.455 0.00 0.00 0.00 2.92
986 1082 4.119155 AGATTGGAGATTTTAGGGTGGGA 58.881 43.478 0.00 0.00 0.00 4.37
1018 1114 2.031069 TCTCGTTCGTTCCTGTTGAGAG 60.031 50.000 0.00 0.00 0.00 3.20
1019 1115 1.951602 TCTCGTTCGTTCCTGTTGAGA 59.048 47.619 0.00 0.00 0.00 3.27
1020 1116 2.031069 TCTCTCGTTCGTTCCTGTTGAG 60.031 50.000 0.00 0.00 0.00 3.02
1023 1119 1.336056 GCTCTCTCGTTCGTTCCTGTT 60.336 52.381 0.00 0.00 0.00 3.16
1025 1121 0.241213 TGCTCTCTCGTTCGTTCCTG 59.759 55.000 0.00 0.00 0.00 3.86
1026 1122 0.241481 GTGCTCTCTCGTTCGTTCCT 59.759 55.000 0.00 0.00 0.00 3.36
1027 1123 0.733223 GGTGCTCTCTCGTTCGTTCC 60.733 60.000 0.00 0.00 0.00 3.62
1028 1124 1.066114 CGGTGCTCTCTCGTTCGTTC 61.066 60.000 0.00 0.00 0.00 3.95
1029 1125 1.081376 CGGTGCTCTCTCGTTCGTT 60.081 57.895 0.00 0.00 0.00 3.85
1030 1126 2.561885 CGGTGCTCTCTCGTTCGT 59.438 61.111 0.00 0.00 0.00 3.85
1036 1132 4.838486 CGTCGCCGGTGCTCTCTC 62.838 72.222 11.05 0.00 34.43 3.20
1051 1147 3.793957 ATCTCTCGCCGGGGATCGT 62.794 63.158 22.85 5.87 37.11 3.73
2089 2225 1.615124 TTCTTGGCCTCGGGGATCA 60.615 57.895 4.80 0.00 33.58 2.92
2097 2233 1.435408 GCGCTCATCTTCTTGGCCTC 61.435 60.000 3.32 0.00 0.00 4.70
2107 2243 3.222855 CCTCGAGGGCGCTCATCT 61.223 66.667 27.95 0.84 37.46 2.90
2717 2853 6.238648 TGCAGAATATACTATCTGACGAGGA 58.761 40.000 13.47 0.00 44.64 3.71
2719 2855 6.150307 ACCTGCAGAATATACTATCTGACGAG 59.850 42.308 17.39 0.00 44.64 4.18
2763 2917 4.804108 TGAACGCTCCAACCATTAAAATG 58.196 39.130 0.00 0.00 36.17 2.32
2764 2918 5.461032 TTGAACGCTCCAACCATTAAAAT 57.539 34.783 0.00 0.00 0.00 1.82
2769 2923 2.293399 GAGTTTGAACGCTCCAACCATT 59.707 45.455 0.00 0.00 29.36 3.16
2782 2936 4.893524 TGTACTCTGACTCCTGAGTTTGAA 59.106 41.667 9.59 0.00 45.50 2.69
2784 2938 4.855715 TGTACTCTGACTCCTGAGTTTG 57.144 45.455 9.59 0.00 45.50 2.93
2798 2953 6.980978 CCATCACACGATTATTCTTGTACTCT 59.019 38.462 0.00 0.00 32.99 3.24
2799 2954 6.201044 CCCATCACACGATTATTCTTGTACTC 59.799 42.308 0.00 0.00 32.99 2.59
2800 2955 6.049149 CCCATCACACGATTATTCTTGTACT 58.951 40.000 0.00 0.00 32.99 2.73
2801 2956 5.815740 ACCCATCACACGATTATTCTTGTAC 59.184 40.000 0.00 0.00 32.99 2.90
2802 2957 5.984725 ACCCATCACACGATTATTCTTGTA 58.015 37.500 0.00 0.00 32.99 2.41
2803 2958 4.843728 ACCCATCACACGATTATTCTTGT 58.156 39.130 0.00 0.00 34.91 3.16
2804 2959 4.025730 CGACCCATCACACGATTATTCTTG 60.026 45.833 0.00 0.00 0.00 3.02
2805 2960 4.119862 CGACCCATCACACGATTATTCTT 58.880 43.478 0.00 0.00 0.00 2.52
2806 2961 3.383505 TCGACCCATCACACGATTATTCT 59.616 43.478 0.00 0.00 0.00 2.40
2807 2962 3.713288 TCGACCCATCACACGATTATTC 58.287 45.455 0.00 0.00 0.00 1.75
2808 2963 3.132289 ACTCGACCCATCACACGATTATT 59.868 43.478 0.00 0.00 34.41 1.40
2848 3021 1.822990 CTAACCCGACCAGCAACTCTA 59.177 52.381 0.00 0.00 0.00 2.43
2863 3036 5.810080 ATCACTCCCTATTACTGCTAACC 57.190 43.478 0.00 0.00 0.00 2.85
2892 3070 7.363007 CCTCTTTGATGCACTACTACACTCTTA 60.363 40.741 0.00 0.00 0.00 2.10
2896 3074 4.621747 GCCTCTTTGATGCACTACTACACT 60.622 45.833 0.00 0.00 0.00 3.55
2897 3075 3.619038 GCCTCTTTGATGCACTACTACAC 59.381 47.826 0.00 0.00 0.00 2.90
2898 3076 3.260632 TGCCTCTTTGATGCACTACTACA 59.739 43.478 0.00 0.00 29.00 2.74
2965 3149 9.424319 GTATAATATATTGTCCAGTCCACACAG 57.576 37.037 8.28 0.00 0.00 3.66
2997 3181 7.336427 GGTAGTAGGAGCTAGCGATAGAATTTA 59.664 40.741 12.82 0.00 39.76 1.40
2998 3182 6.151480 GGTAGTAGGAGCTAGCGATAGAATTT 59.849 42.308 12.82 0.00 39.76 1.82
3000 3184 5.045432 AGGTAGTAGGAGCTAGCGATAGAAT 60.045 44.000 12.82 0.00 42.40 2.40
3002 3186 3.839490 AGGTAGTAGGAGCTAGCGATAGA 59.161 47.826 12.82 0.00 42.40 1.98
3003 3187 4.210724 AGGTAGTAGGAGCTAGCGATAG 57.789 50.000 9.55 2.61 42.40 2.08
3004 3188 4.081198 GGTAGGTAGTAGGAGCTAGCGATA 60.081 50.000 9.55 0.60 42.40 2.92
3005 3189 3.307621 GGTAGGTAGTAGGAGCTAGCGAT 60.308 52.174 9.55 1.65 42.40 4.58
3008 3192 3.793819 AGGTAGGTAGTAGGAGCTAGC 57.206 52.381 6.62 6.62 44.43 3.42
3009 3193 5.307544 TCAAGGTAGGTAGTAGGAGCTAG 57.692 47.826 0.00 0.00 30.30 3.42
3010 3194 5.722172 TTCAAGGTAGGTAGTAGGAGCTA 57.278 43.478 0.00 0.00 0.00 3.32
3011 3195 4.604784 TTCAAGGTAGGTAGTAGGAGCT 57.395 45.455 0.00 0.00 0.00 4.09
3012 3196 5.873146 ATTTCAAGGTAGGTAGTAGGAGC 57.127 43.478 0.00 0.00 0.00 4.70
3015 3199 9.462606 AAATGAAATTTCAAGGTAGGTAGTAGG 57.537 33.333 23.91 0.00 44.81 3.18
3062 3251 8.504005 GTGTGTAGCTACTGTGTGAAAATTAAT 58.496 33.333 23.84 0.00 0.00 1.40
3066 3255 4.447724 CGTGTGTAGCTACTGTGTGAAAAT 59.552 41.667 23.84 0.00 0.00 1.82
3073 3262 2.991434 ACTCGTGTGTAGCTACTGTG 57.009 50.000 23.84 13.66 0.00 3.66
3074 3263 7.714377 ACTTATATACTCGTGTGTAGCTACTGT 59.286 37.037 23.84 14.25 0.00 3.55
3077 3266 8.554528 TCAACTTATATACTCGTGTGTAGCTAC 58.445 37.037 17.30 17.30 0.00 3.58
3079 3268 7.282675 AGTCAACTTATATACTCGTGTGTAGCT 59.717 37.037 0.00 0.00 0.00 3.32
3080 3269 7.376336 CAGTCAACTTATATACTCGTGTGTAGC 59.624 40.741 0.00 0.00 0.00 3.58
3081 3270 8.610035 TCAGTCAACTTATATACTCGTGTGTAG 58.390 37.037 0.00 0.00 0.00 2.74
3082 3271 8.496707 TCAGTCAACTTATATACTCGTGTGTA 57.503 34.615 0.00 0.00 0.00 2.90
3083 3272 7.387119 TCAGTCAACTTATATACTCGTGTGT 57.613 36.000 0.00 0.00 0.00 3.72
3084 3273 8.858003 ATTCAGTCAACTTATATACTCGTGTG 57.142 34.615 0.00 0.00 0.00 3.82
3085 3274 9.871238 AAATTCAGTCAACTTATATACTCGTGT 57.129 29.630 0.00 0.00 0.00 4.49
3087 3276 8.818057 GCAAATTCAGTCAACTTATATACTCGT 58.182 33.333 0.00 0.00 0.00 4.18
3088 3277 8.817100 TGCAAATTCAGTCAACTTATATACTCG 58.183 33.333 0.00 0.00 0.00 4.18
3097 3286 8.441312 AATCAAATTGCAAATTCAGTCAACTT 57.559 26.923 1.71 0.00 0.00 2.66
3125 3314 3.000724 CGCTCCTCTCACAAAATCGATTC 59.999 47.826 11.83 0.00 0.00 2.52
3148 3337 1.557371 CCCTCCTTTCTCTTCCTCCAC 59.443 57.143 0.00 0.00 0.00 4.02
3149 3338 1.958288 CCCTCCTTTCTCTTCCTCCA 58.042 55.000 0.00 0.00 0.00 3.86
3150 3339 0.544223 GCCCTCCTTTCTCTTCCTCC 59.456 60.000 0.00 0.00 0.00 4.30
3152 3341 0.178861 TGGCCCTCCTTTCTCTTCCT 60.179 55.000 0.00 0.00 0.00 3.36
3153 3342 0.922626 ATGGCCCTCCTTTCTCTTCC 59.077 55.000 0.00 0.00 0.00 3.46
3154 3343 2.373224 CAATGGCCCTCCTTTCTCTTC 58.627 52.381 0.00 0.00 0.00 2.87
3160 3349 1.312884 AGATCCAATGGCCCTCCTTT 58.687 50.000 0.00 0.00 0.00 3.11
3161 3350 1.312884 AAGATCCAATGGCCCTCCTT 58.687 50.000 0.00 0.00 0.00 3.36
3163 3352 2.587522 GTTAAGATCCAATGGCCCTCC 58.412 52.381 0.00 0.00 0.00 4.30
3164 3353 2.587522 GGTTAAGATCCAATGGCCCTC 58.412 52.381 0.00 0.00 0.00 4.30
3167 3356 2.452600 TGGGTTAAGATCCAATGGCC 57.547 50.000 0.00 0.00 0.00 5.36
3172 3361 3.756082 AGCCATTGGGTTAAGATCCAA 57.244 42.857 0.36 7.15 45.72 3.53
3174 3363 3.394606 TCCTAGCCATTGGGTTAAGATCC 59.605 47.826 13.49 0.00 34.28 3.36
3176 3365 5.466127 TTTCCTAGCCATTGGGTTAAGAT 57.534 39.130 13.49 0.00 34.28 2.40
3177 3366 4.938575 TTTCCTAGCCATTGGGTTAAGA 57.061 40.909 13.49 5.01 34.28 2.10
3178 3367 5.221048 CGATTTTCCTAGCCATTGGGTTAAG 60.221 44.000 13.49 5.21 34.28 1.85
3179 3368 4.642885 CGATTTTCCTAGCCATTGGGTTAA 59.357 41.667 13.49 3.05 34.28 2.01
3180 3369 4.080243 TCGATTTTCCTAGCCATTGGGTTA 60.080 41.667 13.49 0.00 34.28 2.85
3181 3370 3.023832 CGATTTTCCTAGCCATTGGGTT 58.976 45.455 13.49 0.00 34.28 4.11
3182 3371 2.241176 TCGATTTTCCTAGCCATTGGGT 59.759 45.455 12.79 12.79 37.19 4.51
3183 3372 2.618709 GTCGATTTTCCTAGCCATTGGG 59.381 50.000 4.53 0.00 37.18 4.12
3184 3373 3.545703 AGTCGATTTTCCTAGCCATTGG 58.454 45.455 0.00 0.00 0.00 3.16
3185 3374 5.007724 GGTAAGTCGATTTTCCTAGCCATTG 59.992 44.000 8.77 0.00 0.00 2.82
3186 3375 5.123936 GGTAAGTCGATTTTCCTAGCCATT 58.876 41.667 8.77 0.00 0.00 3.16
3187 3376 4.444449 GGGTAAGTCGATTTTCCTAGCCAT 60.444 45.833 14.44 0.00 0.00 4.40
3188 3377 3.118519 GGGTAAGTCGATTTTCCTAGCCA 60.119 47.826 14.44 0.00 0.00 4.75
3189 3378 3.118519 TGGGTAAGTCGATTTTCCTAGCC 60.119 47.826 14.44 8.83 0.00 3.93
3190 3379 4.133013 TGGGTAAGTCGATTTTCCTAGC 57.867 45.455 14.44 0.00 0.00 3.42
3191 3380 7.625828 ATTTTGGGTAAGTCGATTTTCCTAG 57.374 36.000 14.44 0.00 0.00 3.02
3192 3381 9.517868 TTTATTTTGGGTAAGTCGATTTTCCTA 57.482 29.630 14.44 7.20 0.00 2.94
3193 3382 8.411991 TTTATTTTGGGTAAGTCGATTTTCCT 57.588 30.769 14.44 0.00 0.00 3.36
3194 3383 9.647797 AATTTATTTTGGGTAAGTCGATTTTCC 57.352 29.630 7.66 7.66 0.00 3.13
3198 3387 9.855021 CTGAAATTTATTTTGGGTAAGTCGATT 57.145 29.630 0.00 0.00 0.00 3.34
3199 3388 8.466798 CCTGAAATTTATTTTGGGTAAGTCGAT 58.533 33.333 0.00 0.00 0.00 3.59
3200 3389 7.449086 ACCTGAAATTTATTTTGGGTAAGTCGA 59.551 33.333 9.63 0.00 35.09 4.20
3201 3390 7.599171 ACCTGAAATTTATTTTGGGTAAGTCG 58.401 34.615 9.63 0.00 35.09 4.18
3203 3392 8.528643 GCTACCTGAAATTTATTTTGGGTAAGT 58.471 33.333 14.84 0.00 37.06 2.24
3204 3393 7.979537 GGCTACCTGAAATTTATTTTGGGTAAG 59.020 37.037 14.84 11.87 37.06 2.34
3205 3394 7.455008 TGGCTACCTGAAATTTATTTTGGGTAA 59.545 33.333 14.84 5.13 37.06 2.85
3206 3395 6.954684 TGGCTACCTGAAATTTATTTTGGGTA 59.045 34.615 13.99 13.99 36.77 3.69
3207 3396 5.782845 TGGCTACCTGAAATTTATTTTGGGT 59.217 36.000 13.48 13.48 38.00 4.51
3208 3397 6.070824 ACTGGCTACCTGAAATTTATTTTGGG 60.071 38.462 0.00 8.44 32.05 4.12
3209 3398 6.935167 ACTGGCTACCTGAAATTTATTTTGG 58.065 36.000 0.00 0.00 33.17 3.28
3210 3399 7.830739 AGACTGGCTACCTGAAATTTATTTTG 58.169 34.615 0.00 0.00 0.00 2.44
3211 3400 8.422577 AAGACTGGCTACCTGAAATTTATTTT 57.577 30.769 0.00 0.00 0.00 1.82
3212 3401 8.957466 GTAAGACTGGCTACCTGAAATTTATTT 58.043 33.333 0.00 0.00 0.00 1.40
3213 3402 8.329502 AGTAAGACTGGCTACCTGAAATTTATT 58.670 33.333 0.00 0.00 0.00 1.40
3214 3403 7.862675 AGTAAGACTGGCTACCTGAAATTTAT 58.137 34.615 0.00 0.00 0.00 1.40
3215 3404 7.253905 AGTAAGACTGGCTACCTGAAATTTA 57.746 36.000 0.00 0.00 0.00 1.40
3216 3405 6.128138 AGTAAGACTGGCTACCTGAAATTT 57.872 37.500 0.00 0.00 0.00 1.82
3217 3406 5.763876 AGTAAGACTGGCTACCTGAAATT 57.236 39.130 0.00 0.00 0.00 1.82
3218 3407 5.763876 AAGTAAGACTGGCTACCTGAAAT 57.236 39.130 0.00 0.00 0.00 2.17
3219 3408 5.071250 TGAAAGTAAGACTGGCTACCTGAAA 59.929 40.000 0.00 0.00 0.00 2.69
3220 3409 4.591498 TGAAAGTAAGACTGGCTACCTGAA 59.409 41.667 0.00 0.00 0.00 3.02
3221 3410 4.157246 TGAAAGTAAGACTGGCTACCTGA 58.843 43.478 0.00 0.00 0.00 3.86
3222 3411 4.537135 TGAAAGTAAGACTGGCTACCTG 57.463 45.455 0.00 0.00 0.00 4.00
3223 3412 4.777896 TGATGAAAGTAAGACTGGCTACCT 59.222 41.667 0.00 0.00 0.00 3.08
3224 3413 5.086104 TGATGAAAGTAAGACTGGCTACC 57.914 43.478 0.00 0.00 0.00 3.18
3225 3414 4.568760 GCTGATGAAAGTAAGACTGGCTAC 59.431 45.833 0.00 0.00 0.00 3.58
3226 3415 4.383118 GGCTGATGAAAGTAAGACTGGCTA 60.383 45.833 0.00 0.00 0.00 3.93
3227 3416 3.604582 GCTGATGAAAGTAAGACTGGCT 58.395 45.455 0.00 0.00 0.00 4.75
3228 3417 2.680339 GGCTGATGAAAGTAAGACTGGC 59.320 50.000 0.00 0.00 0.00 4.85
3229 3418 2.932614 CGGCTGATGAAAGTAAGACTGG 59.067 50.000 0.00 0.00 0.00 4.00
3230 3419 3.369147 CACGGCTGATGAAAGTAAGACTG 59.631 47.826 0.00 0.00 0.00 3.51
3231 3420 3.258372 TCACGGCTGATGAAAGTAAGACT 59.742 43.478 0.00 0.00 0.00 3.24
3232 3421 3.368236 GTCACGGCTGATGAAAGTAAGAC 59.632 47.826 0.00 0.00 0.00 3.01
3233 3422 3.006430 TGTCACGGCTGATGAAAGTAAGA 59.994 43.478 0.00 0.00 0.00 2.10
3234 3423 3.325870 TGTCACGGCTGATGAAAGTAAG 58.674 45.455 0.00 0.00 0.00 2.34
3235 3424 3.394674 TGTCACGGCTGATGAAAGTAA 57.605 42.857 0.00 0.00 0.00 2.24
3236 3425 3.261580 CATGTCACGGCTGATGAAAGTA 58.738 45.455 0.00 0.00 0.00 2.24
3237 3426 2.079158 CATGTCACGGCTGATGAAAGT 58.921 47.619 0.00 0.00 0.00 2.66
3238 3427 2.079158 ACATGTCACGGCTGATGAAAG 58.921 47.619 0.00 0.00 0.00 2.62
3242 3431 2.299993 AGTACATGTCACGGCTGATG 57.700 50.000 0.00 0.00 0.00 3.07
3246 3435 2.358267 GCTAGTAGTACATGTCACGGCT 59.642 50.000 0.00 5.98 0.00 5.52
3267 3456 1.242076 CCCAAGAGAGGCAAACACTG 58.758 55.000 0.00 0.00 0.00 3.66
3302 3659 5.147330 ACTTGTGATCCGTTAACATGAGA 57.853 39.130 6.39 0.00 0.00 3.27
3304 3661 5.180492 GGAAACTTGTGATCCGTTAACATGA 59.820 40.000 6.39 1.80 0.00 3.07
3368 3728 2.949678 GCGTGCGTGATCGATCGT 60.950 61.111 20.03 2.13 39.71 3.73
3435 3801 2.811542 AAGCGAGGAAGGAAGCTGCC 62.812 60.000 0.73 0.73 40.17 4.85
3481 3856 0.821301 TCAAACAGCCCAACATCGCA 60.821 50.000 0.00 0.00 0.00 5.10
3490 3866 2.488153 GGTACTTGTCATCAAACAGCCC 59.512 50.000 0.00 0.00 32.87 5.19
3518 3894 1.550327 ACTCTCAAGTCTCCGCATGA 58.450 50.000 0.00 0.00 0.00 3.07
3550 3929 5.747545 GCTCTCCTCTCATAGTCTCATGGTA 60.748 48.000 0.00 0.00 0.00 3.25
3598 3978 1.070786 GTGACGGACCAGCAGGAAA 59.929 57.895 0.35 0.00 38.69 3.13
3608 3988 0.033504 TGCAGAAGAAGGTGACGGAC 59.966 55.000 0.00 0.00 0.00 4.79
3708 4092 4.873129 GCGGGCGAGCGATCAAGA 62.873 66.667 0.00 0.00 0.00 3.02
3721 4105 3.499737 CTTGTTGCCTAGCGCGGG 61.500 66.667 8.83 16.25 42.08 6.13
3734 4121 2.125766 GAAAGCGAGGTCCCCCTTGT 62.126 60.000 0.00 0.00 42.86 3.16
3738 4125 2.269241 CAGAAAGCGAGGTCCCCC 59.731 66.667 0.00 0.00 0.00 5.40
3757 4144 1.197949 AGACGATCGCCGATGTATCAG 59.802 52.381 16.60 0.00 41.76 2.90
3786 4177 0.032540 CGGCATCCACATCGATCAGA 59.967 55.000 0.00 0.00 0.00 3.27
3787 4178 0.249615 ACGGCATCCACATCGATCAG 60.250 55.000 0.00 0.00 0.00 2.90
3788 4179 0.177836 AACGGCATCCACATCGATCA 59.822 50.000 0.00 0.00 0.00 2.92
3789 4180 0.583438 CAACGGCATCCACATCGATC 59.417 55.000 0.00 0.00 0.00 3.69
3790 4181 0.815213 CCAACGGCATCCACATCGAT 60.815 55.000 0.00 0.00 0.00 3.59
3806 4197 4.329545 GTCTGACCGGCCTGCCAA 62.330 66.667 0.00 0.00 35.37 4.52
3808 4199 4.459089 GAGTCTGACCGGCCTGCC 62.459 72.222 0.00 0.00 0.00 4.85
3811 4202 2.600769 AACGAGTCTGACCGGCCT 60.601 61.111 18.25 0.00 0.00 5.19


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.