Multiple sequence alignment - TraesCS5D01G471400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G471400 chr5D 100.000 4968 0 0 1 4968 512394812 512389845 0.000000e+00 9175.0
1 TraesCS5D01G471400 chr5D 91.349 393 25 8 1034 1425 277135138 277135522 3.410000e-146 529.0
2 TraesCS5D01G471400 chr5D 88.095 84 10 0 3260 3343 542275434 542275517 3.160000e-17 100.0
3 TraesCS5D01G471400 chr5B 94.809 3506 119 23 1486 4968 643405218 643401753 0.000000e+00 5408.0
4 TraesCS5D01G471400 chr5B 93.182 44 2 1 988 1030 548989413 548989456 4.150000e-06 63.9
5 TraesCS5D01G471400 chr2D 82.604 960 96 35 1 933 411695327 411694412 0.000000e+00 782.0
6 TraesCS5D01G471400 chr2D 90.977 399 30 5 1031 1426 16987579 16987184 2.630000e-147 532.0
7 TraesCS5D01G471400 chr5A 80.812 985 125 29 6 961 567274242 567275191 0.000000e+00 713.0
8 TraesCS5D01G471400 chr5A 82.236 653 70 22 29 652 564238575 564239210 5.700000e-144 521.0
9 TraesCS5D01G471400 chr5A 84.478 393 45 11 439 819 3415668 3415280 1.690000e-99 374.0
10 TraesCS5D01G471400 chr5A 81.208 149 25 2 32 177 570467078 570467226 3.140000e-22 117.0
11 TraesCS5D01G471400 chr6B 80.485 989 128 37 1 964 510726484 510725536 0.000000e+00 697.0
12 TraesCS5D01G471400 chr3B 80.826 944 105 35 14 904 730238814 730239734 0.000000e+00 671.0
13 TraesCS5D01G471400 chr3B 83.973 599 75 12 4331 4929 55952439 55951862 5.620000e-154 555.0
14 TraesCS5D01G471400 chr3B 91.624 394 26 6 1034 1426 398956499 398956886 5.660000e-149 538.0
15 TraesCS5D01G471400 chr3B 90.585 393 31 5 1034 1425 592690838 592690451 2.650000e-142 516.0
16 TraesCS5D01G471400 chr1D 85.714 644 79 10 4327 4968 114212190 114212822 0.000000e+00 667.0
17 TraesCS5D01G471400 chr1D 91.371 394 29 5 1033 1425 481701886 481702275 7.320000e-148 534.0
18 TraesCS5D01G471400 chr1D 86.735 294 39 0 4342 4635 338746917 338746624 1.330000e-85 327.0
19 TraesCS5D01G471400 chr1D 93.182 44 2 1 988 1030 90518275 90518318 4.150000e-06 63.9
20 TraesCS5D01G471400 chr2A 85.491 641 83 8 4331 4968 513643937 513643304 0.000000e+00 660.0
21 TraesCS5D01G471400 chr2A 83.110 746 79 14 1 706 605357913 605358651 1.950000e-178 636.0
22 TraesCS5D01G471400 chr2A 90.680 397 29 4 1031 1426 18463629 18464018 5.700000e-144 521.0
23 TraesCS5D01G471400 chr2A 79.231 520 92 11 1704 2218 754609654 754610162 1.020000e-91 348.0
24 TraesCS5D01G471400 chr2A 87.681 138 15 2 4 139 34463684 34463547 5.150000e-35 159.0
25 TraesCS5D01G471400 chr4A 84.891 642 93 3 4329 4968 416226885 416227524 0.000000e+00 645.0
26 TraesCS5D01G471400 chr7D 81.944 792 93 23 6 768 29061916 29061146 4.220000e-175 625.0
27 TraesCS5D01G471400 chr7D 91.624 394 29 4 1035 1425 578817576 578817968 4.370000e-150 542.0
28 TraesCS5D01G471400 chr7D 79.924 264 39 12 82 339 15365288 15365543 1.100000e-41 182.0
29 TraesCS5D01G471400 chr7D 83.333 102 14 2 18 116 108717382 108717281 1.900000e-14 91.6
30 TraesCS5D01G471400 chr7B 82.627 731 88 19 1 722 713585511 713584811 1.180000e-170 610.0
31 TraesCS5D01G471400 chr7B 85.744 484 64 4 4487 4968 413577679 413577199 1.600000e-139 507.0
32 TraesCS5D01G471400 chr4D 84.838 587 80 6 4329 4908 138417998 138417414 2.580000e-162 582.0
33 TraesCS5D01G471400 chr4D 89.431 246 25 1 439 683 108225097 108225342 4.830000e-80 309.0
34 TraesCS5D01G471400 chr4D 88.776 196 18 4 148 340 108224659 108224853 2.310000e-58 237.0
35 TraesCS5D01G471400 chr3A 83.178 642 76 17 4330 4968 51697172 51696560 4.340000e-155 558.0
36 TraesCS5D01G471400 chr3A 82.609 506 83 4 4454 4956 453296869 453297372 4.560000e-120 442.0
37 TraesCS5D01G471400 chr3A 78.099 484 94 12 1693 2170 540338 540815 3.760000e-76 296.0
38 TraesCS5D01G471400 chr6A 82.192 657 89 20 280 916 77914200 77913552 1.570000e-149 540.0
39 TraesCS5D01G471400 chr6A 76.419 458 93 14 1750 2198 616033477 616033026 2.990000e-57 233.0
40 TraesCS5D01G471400 chr6A 76.786 168 31 6 2337 2500 616032929 616032766 2.460000e-13 87.9
41 TraesCS5D01G471400 chr2B 90.955 398 31 5 1031 1426 28879364 28878970 9.470000e-147 531.0
42 TraesCS5D01G471400 chr2B 81.447 539 54 18 336 872 465744287 465743793 2.790000e-107 399.0
43 TraesCS5D01G471400 chr2B 85.806 310 31 7 3 307 728395330 728395631 2.890000e-82 316.0
44 TraesCS5D01G471400 chr2B 82.828 99 13 2 19 114 114520863 114520766 8.860000e-13 86.1
45 TraesCS5D01G471400 chr7A 88.969 417 35 9 1019 1429 443968238 443967827 5.740000e-139 505.0
46 TraesCS5D01G471400 chr3D 77.778 531 106 12 1694 2218 3371008 3371532 2.890000e-82 316.0
47 TraesCS5D01G471400 chr3D 78.333 180 33 5 2334 2510 3371606 3371782 1.460000e-20 111.0
48 TraesCS5D01G471400 chr4B 80.000 305 48 8 14 311 495087471 495087769 3.900000e-51 213.0
49 TraesCS5D01G471400 chr4B 100.000 32 0 0 1000 1031 559643207 559643176 5.370000e-05 60.2
50 TraesCS5D01G471400 chr4B 100.000 32 0 0 1000 1031 559643717 559643686 5.370000e-05 60.2
51 TraesCS5D01G471400 chrUn 79.365 189 30 5 1 181 15831503 15831690 1.880000e-24 124.0
52 TraesCS5D01G471400 chrUn 77.778 189 32 6 1 181 15372287 15372101 1.890000e-19 108.0
53 TraesCS5D01G471400 chr1A 100.000 28 0 0 1003 1030 449509608 449509581 9.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G471400 chr5D 512389845 512394812 4967 True 9175.0 9175 100.0000 1 4968 1 chr5D.!!$R1 4967
1 TraesCS5D01G471400 chr5B 643401753 643405218 3465 True 5408.0 5408 94.8090 1486 4968 1 chr5B.!!$R1 3482
2 TraesCS5D01G471400 chr2D 411694412 411695327 915 True 782.0 782 82.6040 1 933 1 chr2D.!!$R2 932
3 TraesCS5D01G471400 chr5A 567274242 567275191 949 False 713.0 713 80.8120 6 961 1 chr5A.!!$F2 955
4 TraesCS5D01G471400 chr5A 564238575 564239210 635 False 521.0 521 82.2360 29 652 1 chr5A.!!$F1 623
5 TraesCS5D01G471400 chr6B 510725536 510726484 948 True 697.0 697 80.4850 1 964 1 chr6B.!!$R1 963
6 TraesCS5D01G471400 chr3B 730238814 730239734 920 False 671.0 671 80.8260 14 904 1 chr3B.!!$F2 890
7 TraesCS5D01G471400 chr3B 55951862 55952439 577 True 555.0 555 83.9730 4331 4929 1 chr3B.!!$R1 598
8 TraesCS5D01G471400 chr1D 114212190 114212822 632 False 667.0 667 85.7140 4327 4968 1 chr1D.!!$F2 641
9 TraesCS5D01G471400 chr2A 513643304 513643937 633 True 660.0 660 85.4910 4331 4968 1 chr2A.!!$R2 637
10 TraesCS5D01G471400 chr2A 605357913 605358651 738 False 636.0 636 83.1100 1 706 1 chr2A.!!$F2 705
11 TraesCS5D01G471400 chr2A 754609654 754610162 508 False 348.0 348 79.2310 1704 2218 1 chr2A.!!$F3 514
12 TraesCS5D01G471400 chr4A 416226885 416227524 639 False 645.0 645 84.8910 4329 4968 1 chr4A.!!$F1 639
13 TraesCS5D01G471400 chr7D 29061146 29061916 770 True 625.0 625 81.9440 6 768 1 chr7D.!!$R1 762
14 TraesCS5D01G471400 chr7B 713584811 713585511 700 True 610.0 610 82.6270 1 722 1 chr7B.!!$R2 721
15 TraesCS5D01G471400 chr4D 138417414 138417998 584 True 582.0 582 84.8380 4329 4908 1 chr4D.!!$R1 579
16 TraesCS5D01G471400 chr4D 108224659 108225342 683 False 273.0 309 89.1035 148 683 2 chr4D.!!$F1 535
17 TraesCS5D01G471400 chr3A 51696560 51697172 612 True 558.0 558 83.1780 4330 4968 1 chr3A.!!$R1 638
18 TraesCS5D01G471400 chr3A 453296869 453297372 503 False 442.0 442 82.6090 4454 4956 1 chr3A.!!$F2 502
19 TraesCS5D01G471400 chr6A 77913552 77914200 648 True 540.0 540 82.1920 280 916 1 chr6A.!!$R1 636
20 TraesCS5D01G471400 chr3D 3371008 3371782 774 False 213.5 316 78.0555 1694 2510 2 chr3D.!!$F1 816

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
44 45 0.303493 CCTCCGTTGAACGTGTTGTG 59.697 55.0 17.05 0.0 40.58 3.33 F
1414 1701 0.179006 GATGCCCCTGGGTTCAGATC 60.179 60.0 12.71 1.5 43.49 2.75 F
1480 1767 0.115745 AGGGGGTGTACCGAAGAGAA 59.884 55.0 0.00 0.0 41.60 2.87 F
2310 2608 0.110373 GTTTTGGACGCATCACCGAC 60.110 55.0 0.00 0.0 0.00 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1461 1748 0.115745 TTCTCTTCGGTACACCCCCT 59.884 55.0 0.00 0.00 0.00 4.79 R
2275 2573 0.321653 AAACATCCACCCTCTCGTGC 60.322 55.0 0.00 0.00 32.10 5.34 R
3473 3775 0.322277 CCTCATGGTGAGCAGCTGTT 60.322 55.0 16.64 9.79 42.98 3.16 R
4039 4341 0.523968 CATGCTCATTGAAACGGCCG 60.524 55.0 26.86 26.86 0.00 6.13 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 1.554042 CGAACACCCTCCGTTGAACG 61.554 60.000 11.30 11.30 42.11 3.95
44 45 0.303493 CCTCCGTTGAACGTGTTGTG 59.697 55.000 17.05 0.00 40.58 3.33
50 51 3.058390 CCGTTGAACGTGTTGTGTTTTTC 59.942 43.478 17.05 0.00 40.58 2.29
116 121 2.329267 TGGTAGGCATCTATGTCAGGG 58.671 52.381 0.00 0.00 34.11 4.45
119 124 3.901844 GGTAGGCATCTATGTCAGGGTAA 59.098 47.826 0.00 0.00 34.11 2.85
121 126 5.163237 GGTAGGCATCTATGTCAGGGTAAAA 60.163 44.000 0.00 0.00 34.11 1.52
122 127 5.041191 AGGCATCTATGTCAGGGTAAAAG 57.959 43.478 0.00 0.00 34.11 2.27
123 128 4.137543 GGCATCTATGTCAGGGTAAAAGG 58.862 47.826 0.00 0.00 31.41 3.11
357 438 1.241929 TCCTCCTTGGAGTTGGGGT 59.758 57.895 14.77 0.00 40.56 4.95
411 492 3.073678 TCGAGGTCCATGTGTCAAAATG 58.926 45.455 0.00 0.00 0.00 2.32
426 507 7.888021 TGTGTCAAAATGTAAGATGACCCTATT 59.112 33.333 0.00 0.00 41.08 1.73
434 515 8.980481 ATGTAAGATGACCCTATTTTGTTAGG 57.020 34.615 0.00 0.00 38.82 2.69
448 693 1.679977 TTAGGGACGTCCGACTGGG 60.680 63.158 27.68 0.00 41.52 4.45
593 860 2.422479 CTCACATGGCTCAAGTGAATGG 59.578 50.000 12.23 1.48 40.64 3.16
689 961 6.566197 AGAAAGTTGAAGTCATAAAGGCTG 57.434 37.500 0.00 0.00 28.17 4.85
690 962 5.474876 AGAAAGTTGAAGTCATAAAGGCTGG 59.525 40.000 0.00 0.00 28.17 4.85
719 994 9.280456 TCCTTCCTCTAACCATAAAACTTCTAT 57.720 33.333 0.00 0.00 0.00 1.98
732 1007 9.167311 CATAAAACTTCTATTGTCTAGCTGGTT 57.833 33.333 0.00 0.00 0.00 3.67
836 1123 0.533755 GGTCAGATTGATGGGCCGAG 60.534 60.000 0.00 0.00 0.00 4.63
849 1136 1.228154 GCCGAGGGACTGGTTTTGT 60.228 57.895 0.00 0.00 41.55 2.83
861 1148 1.256812 GGTTTTGTGCACCAGCCTAT 58.743 50.000 15.69 0.00 41.13 2.57
864 1151 0.602562 TTTGTGCACCAGCCTATTGC 59.397 50.000 15.69 0.00 41.13 3.56
921 1208 0.466543 ACAACGTAGTGGAGTGGCAA 59.533 50.000 0.00 0.00 45.00 4.52
922 1209 1.148310 CAACGTAGTGGAGTGGCAAG 58.852 55.000 0.00 0.00 45.00 4.01
923 1210 0.756903 AACGTAGTGGAGTGGCAAGT 59.243 50.000 0.00 0.00 45.00 3.16
961 1248 2.223758 CGAGGTTAGGAGTTCGATTCCC 60.224 54.545 11.67 1.80 35.20 3.97
964 1251 1.479730 GTTAGGAGTTCGATTCCCCGT 59.520 52.381 11.67 0.00 35.20 5.28
965 1252 1.108776 TAGGAGTTCGATTCCCCGTG 58.891 55.000 11.67 0.00 35.20 4.94
966 1253 1.814169 GGAGTTCGATTCCCCGTGC 60.814 63.158 5.40 0.00 0.00 5.34
967 1254 1.814169 GAGTTCGATTCCCCGTGCC 60.814 63.158 0.00 0.00 0.00 5.01
968 1255 2.046700 GTTCGATTCCCCGTGCCA 60.047 61.111 0.00 0.00 0.00 4.92
969 1256 2.046700 TTCGATTCCCCGTGCCAC 60.047 61.111 0.00 0.00 0.00 5.01
970 1257 2.884980 TTCGATTCCCCGTGCCACA 61.885 57.895 0.00 0.00 0.00 4.17
971 1258 2.359354 CGATTCCCCGTGCCACAA 60.359 61.111 0.00 0.00 0.00 3.33
972 1259 2.686816 CGATTCCCCGTGCCACAAC 61.687 63.158 0.00 0.00 0.00 3.32
973 1260 2.671619 ATTCCCCGTGCCACAACG 60.672 61.111 0.00 0.00 43.20 4.10
978 1265 3.115892 CCGTGCCACAACGCGTAT 61.116 61.111 14.46 0.00 42.23 3.06
979 1266 2.394136 CGTGCCACAACGCGTATC 59.606 61.111 14.46 0.25 38.69 2.24
980 1267 2.394136 GTGCCACAACGCGTATCG 59.606 61.111 14.46 6.98 45.38 2.92
981 1268 2.811747 TGCCACAACGCGTATCGG 60.812 61.111 14.46 14.49 43.86 4.18
982 1269 2.507547 GCCACAACGCGTATCGGA 60.508 61.111 14.46 0.00 43.86 4.55
983 1270 2.095847 GCCACAACGCGTATCGGAA 61.096 57.895 14.46 0.00 43.86 4.30
984 1271 1.995991 CCACAACGCGTATCGGAAG 59.004 57.895 14.46 0.00 43.86 3.46
985 1272 0.734942 CCACAACGCGTATCGGAAGT 60.735 55.000 14.46 0.00 43.86 3.01
986 1273 0.638746 CACAACGCGTATCGGAAGTC 59.361 55.000 14.46 0.00 43.86 3.01
987 1274 0.524862 ACAACGCGTATCGGAAGTCT 59.475 50.000 14.46 0.00 43.86 3.24
988 1275 1.739466 ACAACGCGTATCGGAAGTCTA 59.261 47.619 14.46 0.00 43.86 2.59
989 1276 2.107178 CAACGCGTATCGGAAGTCTAC 58.893 52.381 14.46 0.00 43.86 2.59
990 1277 1.661341 ACGCGTATCGGAAGTCTACT 58.339 50.000 11.67 0.00 43.86 2.57
991 1278 2.012673 ACGCGTATCGGAAGTCTACTT 58.987 47.619 11.67 0.00 43.86 2.24
992 1279 2.421424 ACGCGTATCGGAAGTCTACTTT 59.579 45.455 11.67 0.00 43.86 2.66
993 1280 3.623060 ACGCGTATCGGAAGTCTACTTTA 59.377 43.478 11.67 0.00 43.86 1.85
994 1281 4.094887 ACGCGTATCGGAAGTCTACTTTAA 59.905 41.667 11.67 0.00 43.86 1.52
995 1282 5.030295 CGCGTATCGGAAGTCTACTTTAAA 58.970 41.667 0.00 0.00 36.11 1.52
996 1283 5.052764 CGCGTATCGGAAGTCTACTTTAAAC 60.053 44.000 0.00 0.00 36.11 2.01
997 1284 5.801947 GCGTATCGGAAGTCTACTTTAAACA 59.198 40.000 0.00 0.00 36.11 2.83
998 1285 6.020837 GCGTATCGGAAGTCTACTTTAAACAG 60.021 42.308 0.00 0.00 36.11 3.16
999 1286 6.471519 CGTATCGGAAGTCTACTTTAAACAGG 59.528 42.308 0.00 0.00 36.11 4.00
1000 1287 6.600882 ATCGGAAGTCTACTTTAAACAGGA 57.399 37.500 0.00 0.00 36.11 3.86
1001 1288 5.776744 TCGGAAGTCTACTTTAAACAGGAC 58.223 41.667 0.00 0.00 36.11 3.85
1002 1289 4.928020 CGGAAGTCTACTTTAAACAGGACC 59.072 45.833 0.00 0.00 36.11 4.46
1003 1290 5.510179 CGGAAGTCTACTTTAAACAGGACCA 60.510 44.000 0.00 0.00 36.11 4.02
1004 1291 6.473758 GGAAGTCTACTTTAAACAGGACCAT 58.526 40.000 0.00 0.00 36.11 3.55
1005 1292 6.594547 GGAAGTCTACTTTAAACAGGACCATC 59.405 42.308 0.00 0.00 36.11 3.51
1006 1293 6.681729 AGTCTACTTTAAACAGGACCATCA 57.318 37.500 0.00 0.00 0.00 3.07
1007 1294 7.259088 AGTCTACTTTAAACAGGACCATCAT 57.741 36.000 0.00 0.00 0.00 2.45
1008 1295 7.106239 AGTCTACTTTAAACAGGACCATCATG 58.894 38.462 0.00 0.00 33.86 3.07
1009 1296 6.879458 GTCTACTTTAAACAGGACCATCATGT 59.121 38.462 0.00 0.00 43.89 3.21
1010 1297 7.064728 GTCTACTTTAAACAGGACCATCATGTC 59.935 40.741 0.00 0.00 40.86 3.06
1024 1311 8.103948 GACCATCATGTCCTTTATTATGAAGG 57.896 38.462 9.22 9.22 44.06 3.46
1025 1312 7.006509 ACCATCATGTCCTTTATTATGAAGGG 58.993 38.462 14.54 8.25 43.13 3.95
1026 1313 6.435277 CCATCATGTCCTTTATTATGAAGGGG 59.565 42.308 14.54 3.86 43.13 4.79
1027 1314 6.590656 TCATGTCCTTTATTATGAAGGGGT 57.409 37.500 14.54 0.61 43.13 4.95
1028 1315 7.699709 TCATGTCCTTTATTATGAAGGGGTA 57.300 36.000 14.54 3.70 43.13 3.69
1029 1316 8.287904 TCATGTCCTTTATTATGAAGGGGTAT 57.712 34.615 14.54 5.55 43.13 2.73
1030 1317 9.400208 TCATGTCCTTTATTATGAAGGGGTATA 57.600 33.333 14.54 0.00 43.13 1.47
1033 1320 8.611257 TGTCCTTTATTATGAAGGGGTATATGG 58.389 37.037 14.54 0.00 43.13 2.74
1034 1321 8.053355 GTCCTTTATTATGAAGGGGTATATGGG 58.947 40.741 14.54 0.00 43.13 4.00
1035 1322 7.185671 TCCTTTATTATGAAGGGGTATATGGGG 59.814 40.741 14.54 0.00 43.13 4.96
1036 1323 7.185671 CCTTTATTATGAAGGGGTATATGGGGA 59.814 40.741 7.77 0.00 39.99 4.81
1037 1324 8.541277 TTTATTATGAAGGGGTATATGGGGAA 57.459 34.615 0.00 0.00 0.00 3.97
1038 1325 6.658555 ATTATGAAGGGGTATATGGGGAAG 57.341 41.667 0.00 0.00 0.00 3.46
1039 1326 3.448277 TGAAGGGGTATATGGGGAAGT 57.552 47.619 0.00 0.00 0.00 3.01
1040 1327 3.053077 TGAAGGGGTATATGGGGAAGTG 58.947 50.000 0.00 0.00 0.00 3.16
1041 1328 1.446016 AGGGGTATATGGGGAAGTGC 58.554 55.000 0.00 0.00 0.00 4.40
1042 1329 1.145571 GGGGTATATGGGGAAGTGCA 58.854 55.000 0.00 0.00 0.00 4.57
1043 1330 1.710809 GGGGTATATGGGGAAGTGCAT 59.289 52.381 0.00 0.00 0.00 3.96
1044 1331 2.555227 GGGGTATATGGGGAAGTGCATG 60.555 54.545 0.00 0.00 0.00 4.06
1045 1332 2.555227 GGGTATATGGGGAAGTGCATGG 60.555 54.545 0.00 0.00 0.00 3.66
1046 1333 2.375174 GGTATATGGGGAAGTGCATGGA 59.625 50.000 0.00 0.00 0.00 3.41
1047 1334 3.010584 GGTATATGGGGAAGTGCATGGAT 59.989 47.826 0.00 0.00 0.00 3.41
1048 1335 2.662535 TATGGGGAAGTGCATGGATG 57.337 50.000 0.00 0.00 0.00 3.51
1049 1336 0.928505 ATGGGGAAGTGCATGGATGA 59.071 50.000 0.00 0.00 0.00 2.92
1050 1337 0.703488 TGGGGAAGTGCATGGATGAA 59.297 50.000 0.00 0.00 0.00 2.57
1051 1338 1.106285 GGGGAAGTGCATGGATGAAC 58.894 55.000 0.00 0.00 36.55 3.18
1052 1339 1.106285 GGGAAGTGCATGGATGAACC 58.894 55.000 0.00 0.00 37.01 3.62
1053 1340 1.106285 GGAAGTGCATGGATGAACCC 58.894 55.000 0.00 0.00 37.01 4.11
1054 1341 0.734889 GAAGTGCATGGATGAACCCG 59.265 55.000 0.00 0.00 37.01 5.28
1055 1342 0.680921 AAGTGCATGGATGAACCCGG 60.681 55.000 0.00 0.00 37.01 5.73
1056 1343 1.077787 GTGCATGGATGAACCCGGA 60.078 57.895 0.73 0.00 38.00 5.14
1057 1344 0.466189 GTGCATGGATGAACCCGGAT 60.466 55.000 0.73 0.00 38.00 4.18
1058 1345 1.135960 TGCATGGATGAACCCGGATA 58.864 50.000 0.73 0.00 38.00 2.59
1059 1346 1.202758 TGCATGGATGAACCCGGATAC 60.203 52.381 0.73 0.00 38.00 2.24
1060 1347 1.202758 GCATGGATGAACCCGGATACA 60.203 52.381 0.73 0.00 38.00 2.29
1061 1348 2.553028 GCATGGATGAACCCGGATACAT 60.553 50.000 0.73 4.84 38.00 2.29
1062 1349 3.307410 GCATGGATGAACCCGGATACATA 60.307 47.826 0.73 0.00 38.00 2.29
1063 1350 4.626287 GCATGGATGAACCCGGATACATAT 60.626 45.833 0.73 0.00 38.00 1.78
1064 1351 4.551702 TGGATGAACCCGGATACATATG 57.448 45.455 0.73 0.00 38.00 1.78
1065 1352 4.164204 TGGATGAACCCGGATACATATGA 58.836 43.478 10.38 0.00 38.00 2.15
1066 1353 4.595350 TGGATGAACCCGGATACATATGAA 59.405 41.667 10.38 0.00 38.00 2.57
1067 1354 4.935808 GGATGAACCCGGATACATATGAAC 59.064 45.833 10.38 0.08 0.00 3.18
1068 1355 4.345859 TGAACCCGGATACATATGAACC 57.654 45.455 10.38 8.39 0.00 3.62
1069 1356 3.071892 TGAACCCGGATACATATGAACCC 59.928 47.826 10.38 5.90 0.00 4.11
1070 1357 2.696775 ACCCGGATACATATGAACCCA 58.303 47.619 10.38 0.00 0.00 4.51
1071 1358 2.370849 ACCCGGATACATATGAACCCAC 59.629 50.000 10.38 0.00 0.00 4.61
1072 1359 2.637872 CCCGGATACATATGAACCCACT 59.362 50.000 10.38 0.00 0.00 4.00
1073 1360 3.072476 CCCGGATACATATGAACCCACTT 59.928 47.826 10.38 0.00 0.00 3.16
1074 1361 4.445735 CCCGGATACATATGAACCCACTTT 60.446 45.833 10.38 0.00 0.00 2.66
1075 1362 4.515191 CCGGATACATATGAACCCACTTTG 59.485 45.833 10.38 0.00 0.00 2.77
1076 1363 5.364778 CGGATACATATGAACCCACTTTGA 58.635 41.667 10.38 0.00 0.00 2.69
1077 1364 5.820423 CGGATACATATGAACCCACTTTGAA 59.180 40.000 10.38 0.00 0.00 2.69
1078 1365 6.317642 CGGATACATATGAACCCACTTTGAAA 59.682 38.462 10.38 0.00 0.00 2.69
1079 1366 7.148154 CGGATACATATGAACCCACTTTGAAAA 60.148 37.037 10.38 0.00 0.00 2.29
1080 1367 8.527810 GGATACATATGAACCCACTTTGAAAAA 58.472 33.333 10.38 0.00 0.00 1.94
1081 1368 9.353999 GATACATATGAACCCACTTTGAAAAAC 57.646 33.333 10.38 0.00 0.00 2.43
1082 1369 7.118496 ACATATGAACCCACTTTGAAAAACA 57.882 32.000 10.38 0.00 0.00 2.83
1083 1370 6.983890 ACATATGAACCCACTTTGAAAAACAC 59.016 34.615 10.38 0.00 0.00 3.32
1084 1371 4.873746 TGAACCCACTTTGAAAAACACA 57.126 36.364 0.00 0.00 0.00 3.72
1085 1372 5.413309 TGAACCCACTTTGAAAAACACAT 57.587 34.783 0.00 0.00 0.00 3.21
1086 1373 5.799213 TGAACCCACTTTGAAAAACACATT 58.201 33.333 0.00 0.00 0.00 2.71
1087 1374 6.234177 TGAACCCACTTTGAAAAACACATTT 58.766 32.000 0.00 0.00 0.00 2.32
1088 1375 6.370166 TGAACCCACTTTGAAAAACACATTTC 59.630 34.615 0.00 0.00 39.28 2.17
1089 1376 6.048732 ACCCACTTTGAAAAACACATTTCT 57.951 33.333 1.99 0.00 39.51 2.52
1090 1377 7.176589 ACCCACTTTGAAAAACACATTTCTA 57.823 32.000 1.99 0.00 39.51 2.10
1091 1378 7.616313 ACCCACTTTGAAAAACACATTTCTAA 58.384 30.769 1.99 0.29 39.51 2.10
1092 1379 8.097662 ACCCACTTTGAAAAACACATTTCTAAA 58.902 29.630 1.99 1.34 39.51 1.85
1093 1380 9.108284 CCCACTTTGAAAAACACATTTCTAAAT 57.892 29.630 1.99 0.00 39.51 1.40
1121 1408 5.391312 AAAAATCCGAAAAGGGAGACATG 57.609 39.130 0.00 0.00 40.02 3.21
1122 1409 2.717639 ATCCGAAAAGGGAGACATGG 57.282 50.000 0.00 0.00 40.02 3.66
1123 1410 0.618458 TCCGAAAAGGGAGACATGGG 59.382 55.000 0.00 0.00 41.52 4.00
1124 1411 0.328258 CCGAAAAGGGAGACATGGGT 59.672 55.000 0.00 0.00 35.97 4.51
1125 1412 1.557832 CCGAAAAGGGAGACATGGGTA 59.442 52.381 0.00 0.00 35.97 3.69
1126 1413 2.629051 CGAAAAGGGAGACATGGGTAC 58.371 52.381 0.00 0.00 0.00 3.34
1127 1414 2.629051 GAAAAGGGAGACATGGGTACG 58.371 52.381 0.00 0.00 0.00 3.67
1128 1415 1.652947 AAAGGGAGACATGGGTACGT 58.347 50.000 0.00 0.00 0.00 3.57
1129 1416 2.537633 AAGGGAGACATGGGTACGTA 57.462 50.000 0.00 0.00 0.00 3.57
1130 1417 2.769602 AGGGAGACATGGGTACGTAT 57.230 50.000 0.00 0.00 0.00 3.06
1131 1418 3.042059 AGGGAGACATGGGTACGTATT 57.958 47.619 0.00 0.00 0.00 1.89
1132 1419 2.963782 AGGGAGACATGGGTACGTATTC 59.036 50.000 0.00 0.00 0.00 1.75
1133 1420 2.696707 GGGAGACATGGGTACGTATTCA 59.303 50.000 0.00 0.61 0.00 2.57
1134 1421 3.323979 GGGAGACATGGGTACGTATTCAT 59.676 47.826 0.00 3.19 0.00 2.57
1135 1422 4.307432 GGAGACATGGGTACGTATTCATG 58.693 47.826 25.83 25.83 41.74 3.07
1137 1424 5.353394 AGACATGGGTACGTATTCATGTT 57.647 39.130 29.85 21.90 46.73 2.71
1138 1425 5.357257 AGACATGGGTACGTATTCATGTTC 58.643 41.667 29.85 24.51 46.73 3.18
1139 1426 5.128827 AGACATGGGTACGTATTCATGTTCT 59.871 40.000 29.85 25.53 46.73 3.01
1140 1427 6.322969 AGACATGGGTACGTATTCATGTTCTA 59.677 38.462 29.85 0.00 46.73 2.10
1141 1428 7.015292 AGACATGGGTACGTATTCATGTTCTAT 59.985 37.037 29.85 20.24 46.73 1.98
1142 1429 6.929049 ACATGGGTACGTATTCATGTTCTATG 59.071 38.462 26.72 13.35 45.19 2.23
1143 1430 6.474140 TGGGTACGTATTCATGTTCTATGT 57.526 37.500 0.00 0.00 0.00 2.29
1144 1431 6.277605 TGGGTACGTATTCATGTTCTATGTG 58.722 40.000 0.00 0.00 0.00 3.21
1145 1432 5.176958 GGGTACGTATTCATGTTCTATGTGC 59.823 44.000 0.00 0.00 0.00 4.57
1146 1433 5.107989 GGTACGTATTCATGTTCTATGTGCG 60.108 44.000 0.00 0.00 0.00 5.34
1147 1434 4.430007 ACGTATTCATGTTCTATGTGCGT 58.570 39.130 0.00 0.00 0.00 5.24
1148 1435 4.267690 ACGTATTCATGTTCTATGTGCGTG 59.732 41.667 0.00 0.00 0.00 5.34
1149 1436 3.680642 ATTCATGTTCTATGTGCGTGC 57.319 42.857 0.00 0.00 0.00 5.34
1150 1437 2.091852 TCATGTTCTATGTGCGTGCA 57.908 45.000 0.00 0.00 0.00 4.57
1151 1438 2.631267 TCATGTTCTATGTGCGTGCAT 58.369 42.857 0.00 0.12 0.00 3.96
1152 1439 3.791245 TCATGTTCTATGTGCGTGCATA 58.209 40.909 0.00 0.00 0.00 3.14
1153 1440 4.187694 TCATGTTCTATGTGCGTGCATAA 58.812 39.130 0.00 0.00 31.76 1.90
1154 1441 4.633565 TCATGTTCTATGTGCGTGCATAAA 59.366 37.500 0.00 0.00 31.76 1.40
1155 1442 4.598406 TGTTCTATGTGCGTGCATAAAG 57.402 40.909 0.00 0.00 31.76 1.85
1156 1443 4.000325 TGTTCTATGTGCGTGCATAAAGT 59.000 39.130 0.00 0.00 31.76 2.66
1157 1444 4.454161 TGTTCTATGTGCGTGCATAAAGTT 59.546 37.500 0.00 0.00 31.76 2.66
1158 1445 5.049060 TGTTCTATGTGCGTGCATAAAGTTT 60.049 36.000 0.00 0.00 31.76 2.66
1159 1446 5.216566 TCTATGTGCGTGCATAAAGTTTC 57.783 39.130 0.00 0.00 31.76 2.78
1160 1447 3.913548 ATGTGCGTGCATAAAGTTTCA 57.086 38.095 0.00 0.00 0.00 2.69
1161 1448 2.993545 TGTGCGTGCATAAAGTTTCAC 58.006 42.857 0.00 0.00 0.00 3.18
1165 1452 3.529634 CGTGCATAAAGTTTCACGGAA 57.470 42.857 16.45 0.00 45.76 4.30
1166 1453 3.879427 CGTGCATAAAGTTTCACGGAAA 58.121 40.909 16.45 0.00 45.76 3.13
1167 1454 4.283678 CGTGCATAAAGTTTCACGGAAAA 58.716 39.130 16.45 0.00 45.76 2.29
1168 1455 4.915085 CGTGCATAAAGTTTCACGGAAAAT 59.085 37.500 16.45 0.00 45.76 1.82
1169 1456 6.081049 CGTGCATAAAGTTTCACGGAAAATA 58.919 36.000 16.45 0.00 45.76 1.40
1170 1457 6.579292 CGTGCATAAAGTTTCACGGAAAATAA 59.421 34.615 16.45 0.00 45.76 1.40
1171 1458 7.408921 CGTGCATAAAGTTTCACGGAAAATAAC 60.409 37.037 16.45 0.00 45.76 1.89
1172 1459 7.593644 GTGCATAAAGTTTCACGGAAAATAACT 59.406 33.333 0.00 0.00 33.14 2.24
1173 1460 8.138712 TGCATAAAGTTTCACGGAAAATAACTT 58.861 29.630 0.00 0.00 39.87 2.66
1174 1461 8.974408 GCATAAAGTTTCACGGAAAATAACTTT 58.026 29.630 13.63 13.63 45.62 2.66
1190 1477 4.040645 TTTTTGGTGGCCTGTGCA 57.959 50.000 3.32 0.00 40.13 4.57
1191 1478 2.290847 TTTTTGGTGGCCTGTGCAA 58.709 47.368 3.32 0.00 40.13 4.08
1192 1479 0.615331 TTTTTGGTGGCCTGTGCAAA 59.385 45.000 3.32 0.00 40.13 3.68
1193 1480 0.615331 TTTTGGTGGCCTGTGCAAAA 59.385 45.000 3.32 0.00 40.13 2.44
1194 1481 0.615331 TTTGGTGGCCTGTGCAAAAA 59.385 45.000 3.32 0.00 40.13 1.94
1221 1508 4.385358 AAAAATTGTGTCCTGAAACGCT 57.615 36.364 0.00 0.00 0.00 5.07
1222 1509 5.508200 AAAAATTGTGTCCTGAAACGCTA 57.492 34.783 0.00 0.00 0.00 4.26
1223 1510 5.705609 AAAATTGTGTCCTGAAACGCTAT 57.294 34.783 0.00 0.00 0.00 2.97
1224 1511 5.705609 AAATTGTGTCCTGAAACGCTATT 57.294 34.783 0.00 0.00 36.91 1.73
1225 1512 5.705609 AATTGTGTCCTGAAACGCTATTT 57.294 34.783 0.00 0.00 33.40 1.40
1226 1513 6.811253 AATTGTGTCCTGAAACGCTATTTA 57.189 33.333 0.00 0.00 33.40 1.40
1227 1514 6.811253 ATTGTGTCCTGAAACGCTATTTAA 57.189 33.333 0.00 0.00 0.00 1.52
1228 1515 6.621316 TTGTGTCCTGAAACGCTATTTAAA 57.379 33.333 0.00 0.00 0.00 1.52
1229 1516 6.621316 TGTGTCCTGAAACGCTATTTAAAA 57.379 33.333 0.00 0.00 0.00 1.52
1230 1517 6.664515 TGTGTCCTGAAACGCTATTTAAAAG 58.335 36.000 0.00 0.00 0.00 2.27
1231 1518 5.567915 GTGTCCTGAAACGCTATTTAAAAGC 59.432 40.000 10.52 10.52 36.60 3.51
1232 1519 5.239744 TGTCCTGAAACGCTATTTAAAAGCA 59.760 36.000 16.99 3.04 40.08 3.91
1233 1520 5.567915 GTCCTGAAACGCTATTTAAAAGCAC 59.432 40.000 16.99 9.18 40.08 4.40
1234 1521 5.472137 TCCTGAAACGCTATTTAAAAGCACT 59.528 36.000 16.99 5.75 40.08 4.40
1235 1522 5.569059 CCTGAAACGCTATTTAAAAGCACTG 59.431 40.000 16.99 7.92 40.08 3.66
1236 1523 6.307031 TGAAACGCTATTTAAAAGCACTGA 57.693 33.333 16.99 0.17 40.08 3.41
1237 1524 6.730175 TGAAACGCTATTTAAAAGCACTGAA 58.270 32.000 16.99 3.40 40.08 3.02
1238 1525 7.197017 TGAAACGCTATTTAAAAGCACTGAAA 58.803 30.769 16.99 0.00 40.08 2.69
1239 1526 7.865385 TGAAACGCTATTTAAAAGCACTGAAAT 59.135 29.630 16.99 0.00 40.08 2.17
1240 1527 8.587952 AAACGCTATTTAAAAGCACTGAAATT 57.412 26.923 16.99 4.36 40.08 1.82
1241 1528 8.587952 AACGCTATTTAAAAGCACTGAAATTT 57.412 26.923 16.99 0.00 40.08 1.82
1242 1529 8.006741 ACGCTATTTAAAAGCACTGAAATTTG 57.993 30.769 16.99 0.00 40.08 2.32
1243 1530 7.651704 ACGCTATTTAAAAGCACTGAAATTTGT 59.348 29.630 16.99 0.00 40.08 2.83
1244 1531 8.155923 CGCTATTTAAAAGCACTGAAATTTGTC 58.844 33.333 16.99 0.00 40.08 3.18
1245 1532 9.196552 GCTATTTAAAAGCACTGAAATTTGTCT 57.803 29.630 13.89 0.00 39.83 3.41
1272 1559 4.695217 TGTGGAGACAACACAAAAAGAC 57.305 40.909 0.00 0.00 45.05 3.01
1273 1560 4.075682 TGTGGAGACAACACAAAAAGACA 58.924 39.130 0.00 0.00 45.05 3.41
1274 1561 4.704540 TGTGGAGACAACACAAAAAGACAT 59.295 37.500 0.00 0.00 45.05 3.06
1275 1562 5.184864 TGTGGAGACAACACAAAAAGACATT 59.815 36.000 0.00 0.00 45.05 2.71
1276 1563 6.099341 GTGGAGACAACACAAAAAGACATTT 58.901 36.000 0.00 0.00 46.06 2.32
1277 1564 6.589907 GTGGAGACAACACAAAAAGACATTTT 59.410 34.615 0.00 0.00 46.06 1.82
1278 1565 7.117667 GTGGAGACAACACAAAAAGACATTTTT 59.882 33.333 0.00 0.00 45.19 1.94
1295 1582 3.731274 TTTTTCACAAAACTTTGCGCC 57.269 38.095 4.18 0.00 41.79 6.53
1296 1583 1.272781 TTTCACAAAACTTTGCGCCG 58.727 45.000 4.18 0.00 41.79 6.46
1297 1584 1.142778 TTCACAAAACTTTGCGCCGC 61.143 50.000 4.18 0.00 41.79 6.53
1298 1585 2.653766 ACAAAACTTTGCGCCGCG 60.654 55.556 8.83 8.83 41.79 6.46
1309 1596 4.681643 CGCCGCGCACACACATTT 62.682 61.111 8.75 0.00 0.00 2.32
1310 1597 3.098958 GCCGCGCACACACATTTG 61.099 61.111 8.75 0.00 0.00 2.32
1311 1598 2.331098 CCGCGCACACACATTTGT 59.669 55.556 8.75 0.00 35.84 2.83
1343 1630 9.932207 TGTATGCATGAAATTTTCTTCTGATTT 57.068 25.926 10.16 0.00 0.00 2.17
1382 1669 8.635877 AAACGTACTTAAATTGCATTTTGTGA 57.364 26.923 15.14 2.79 33.82 3.58
1383 1670 8.635877 AACGTACTTAAATTGCATTTTGTGAA 57.364 26.923 15.14 3.05 33.82 3.18
1384 1671 8.635877 ACGTACTTAAATTGCATTTTGTGAAA 57.364 26.923 15.14 2.75 33.82 2.69
1385 1672 9.088512 ACGTACTTAAATTGCATTTTGTGAAAA 57.911 25.926 15.14 2.44 33.82 2.29
1386 1673 9.566624 CGTACTTAAATTGCATTTTGTGAAAAG 57.433 29.630 15.14 12.27 33.22 2.27
1389 1676 8.397148 ACTTAAATTGCATTTTGTGAAAAGTGG 58.603 29.630 15.14 0.00 33.22 4.00
1390 1677 5.754543 AATTGCATTTTGTGAAAAGTGGG 57.245 34.783 0.00 0.00 33.22 4.61
1391 1678 3.902881 TGCATTTTGTGAAAAGTGGGT 57.097 38.095 0.00 0.00 33.22 4.51
1392 1679 3.529533 TGCATTTTGTGAAAAGTGGGTG 58.470 40.909 0.00 0.00 33.22 4.61
1393 1680 2.287644 GCATTTTGTGAAAAGTGGGTGC 59.712 45.455 0.00 0.00 33.22 5.01
1394 1681 3.529533 CATTTTGTGAAAAGTGGGTGCA 58.470 40.909 0.00 0.00 33.22 4.57
1395 1682 2.957491 TTTGTGAAAAGTGGGTGCAG 57.043 45.000 0.00 0.00 0.00 4.41
1396 1683 2.136298 TTGTGAAAAGTGGGTGCAGA 57.864 45.000 0.00 0.00 0.00 4.26
1397 1684 2.363306 TGTGAAAAGTGGGTGCAGAT 57.637 45.000 0.00 0.00 0.00 2.90
1398 1685 1.955778 TGTGAAAAGTGGGTGCAGATG 59.044 47.619 0.00 0.00 0.00 2.90
1399 1686 0.961019 TGAAAAGTGGGTGCAGATGC 59.039 50.000 0.00 0.00 42.50 3.91
1400 1687 0.244721 GAAAAGTGGGTGCAGATGCC 59.755 55.000 1.72 0.00 41.18 4.40
1401 1688 1.187567 AAAAGTGGGTGCAGATGCCC 61.188 55.000 3.10 3.10 45.04 5.36
1402 1689 3.590466 AAGTGGGTGCAGATGCCCC 62.590 63.158 18.99 18.99 45.76 5.80
1403 1690 4.052518 GTGGGTGCAGATGCCCCT 62.053 66.667 23.42 0.00 45.75 4.79
1404 1691 4.051167 TGGGTGCAGATGCCCCTG 62.051 66.667 23.42 0.00 45.75 4.45
1405 1692 4.828296 GGGTGCAGATGCCCCTGG 62.828 72.222 18.69 0.00 43.68 4.45
1406 1693 4.828296 GGTGCAGATGCCCCTGGG 62.828 72.222 5.50 5.50 41.18 4.45
1407 1694 4.052518 GTGCAGATGCCCCTGGGT 62.053 66.667 12.71 0.00 41.18 4.51
1408 1695 3.267233 TGCAGATGCCCCTGGGTT 61.267 61.111 12.71 0.00 41.18 4.11
1409 1696 2.440980 GCAGATGCCCCTGGGTTC 60.441 66.667 12.71 5.75 37.65 3.62
1410 1697 3.089838 CAGATGCCCCTGGGTTCA 58.910 61.111 12.71 9.64 37.65 3.18
1411 1698 1.077212 CAGATGCCCCTGGGTTCAG 60.077 63.158 12.71 0.00 40.59 3.02
1412 1699 1.229951 AGATGCCCCTGGGTTCAGA 60.230 57.895 12.71 0.00 43.49 3.27
1413 1700 0.625683 AGATGCCCCTGGGTTCAGAT 60.626 55.000 12.71 0.00 43.49 2.90
1414 1701 0.179006 GATGCCCCTGGGTTCAGATC 60.179 60.000 12.71 1.50 43.49 2.75
1415 1702 1.987807 ATGCCCCTGGGTTCAGATCG 61.988 60.000 12.71 0.00 43.49 3.69
1416 1703 2.670148 GCCCCTGGGTTCAGATCGT 61.670 63.158 12.71 0.00 43.49 3.73
1417 1704 1.221840 CCCCTGGGTTCAGATCGTG 59.778 63.158 12.71 0.00 43.49 4.35
1418 1705 1.450312 CCCTGGGTTCAGATCGTGC 60.450 63.158 3.97 0.00 43.49 5.34
1419 1706 1.450312 CCTGGGTTCAGATCGTGCC 60.450 63.158 0.00 0.00 43.49 5.01
1420 1707 1.450312 CTGGGTTCAGATCGTGCCC 60.450 63.158 9.71 9.71 43.49 5.36
1421 1708 2.511600 GGGTTCAGATCGTGCCCG 60.512 66.667 2.76 0.00 0.00 6.13
1422 1709 3.195698 GGTTCAGATCGTGCCCGC 61.196 66.667 0.00 0.00 0.00 6.13
1423 1710 2.125512 GTTCAGATCGTGCCCGCT 60.126 61.111 0.00 0.00 0.00 5.52
1424 1711 2.167861 GTTCAGATCGTGCCCGCTC 61.168 63.158 0.00 0.00 0.00 5.03
1425 1712 3.699955 TTCAGATCGTGCCCGCTCG 62.700 63.158 4.86 4.86 34.54 5.03
1436 1723 3.706373 CCGCTCGGGGGATATGGG 61.706 72.222 0.00 0.00 37.91 4.00
1437 1724 3.706373 CGCTCGGGGGATATGGGG 61.706 72.222 0.00 0.00 0.00 4.96
1438 1725 2.529389 GCTCGGGGGATATGGGGT 60.529 66.667 0.00 0.00 0.00 4.95
1439 1726 1.229400 GCTCGGGGGATATGGGGTA 60.229 63.158 0.00 0.00 0.00 3.69
1440 1727 0.838987 GCTCGGGGGATATGGGGTAA 60.839 60.000 0.00 0.00 0.00 2.85
1441 1728 1.966845 CTCGGGGGATATGGGGTAAT 58.033 55.000 0.00 0.00 0.00 1.89
1442 1729 1.838077 CTCGGGGGATATGGGGTAATC 59.162 57.143 0.00 0.00 0.00 1.75
1443 1730 1.152486 TCGGGGGATATGGGGTAATCA 59.848 52.381 0.00 0.00 0.00 2.57
1444 1731 2.205342 CGGGGGATATGGGGTAATCAT 58.795 52.381 0.00 0.00 0.00 2.45
1445 1732 2.092429 CGGGGGATATGGGGTAATCATG 60.092 54.545 0.00 0.00 0.00 3.07
1446 1733 2.244769 GGGGGATATGGGGTAATCATGG 59.755 54.545 0.00 0.00 0.00 3.66
1447 1734 2.926329 GGGGATATGGGGTAATCATGGT 59.074 50.000 0.00 0.00 0.00 3.55
1448 1735 3.336694 GGGGATATGGGGTAATCATGGTT 59.663 47.826 0.00 0.00 0.00 3.67
1449 1736 4.344104 GGGATATGGGGTAATCATGGTTG 58.656 47.826 0.08 0.00 0.00 3.77
1450 1737 4.202673 GGGATATGGGGTAATCATGGTTGT 60.203 45.833 0.08 0.00 0.00 3.32
1451 1738 5.393866 GGATATGGGGTAATCATGGTTGTT 58.606 41.667 0.08 0.00 0.00 2.83
1452 1739 5.243730 GGATATGGGGTAATCATGGTTGTTG 59.756 44.000 0.08 0.00 0.00 3.33
1453 1740 3.816398 TGGGGTAATCATGGTTGTTGA 57.184 42.857 0.08 0.00 0.00 3.18
1454 1741 4.329638 TGGGGTAATCATGGTTGTTGAT 57.670 40.909 0.08 0.00 35.35 2.57
1455 1742 4.022603 TGGGGTAATCATGGTTGTTGATG 58.977 43.478 0.08 0.00 34.14 3.07
1456 1743 4.023291 GGGGTAATCATGGTTGTTGATGT 58.977 43.478 0.08 0.00 34.14 3.06
1457 1744 4.142182 GGGGTAATCATGGTTGTTGATGTG 60.142 45.833 0.08 0.00 34.14 3.21
1458 1745 4.462483 GGGTAATCATGGTTGTTGATGTGT 59.538 41.667 0.08 0.00 34.14 3.72
1459 1746 5.047377 GGGTAATCATGGTTGTTGATGTGTT 60.047 40.000 0.08 0.00 34.14 3.32
1460 1747 6.454795 GGTAATCATGGTTGTTGATGTGTTT 58.545 36.000 0.08 0.00 34.14 2.83
1461 1748 7.309499 GGGTAATCATGGTTGTTGATGTGTTTA 60.309 37.037 0.08 0.00 34.14 2.01
1462 1749 7.754924 GGTAATCATGGTTGTTGATGTGTTTAG 59.245 37.037 0.08 0.00 34.14 1.85
1463 1750 5.703978 TCATGGTTGTTGATGTGTTTAGG 57.296 39.130 0.00 0.00 0.00 2.69
1464 1751 4.522405 TCATGGTTGTTGATGTGTTTAGGG 59.478 41.667 0.00 0.00 0.00 3.53
1465 1752 3.226777 TGGTTGTTGATGTGTTTAGGGG 58.773 45.455 0.00 0.00 0.00 4.79
1466 1753 2.560981 GGTTGTTGATGTGTTTAGGGGG 59.439 50.000 0.00 0.00 0.00 5.40
1467 1754 3.227614 GTTGTTGATGTGTTTAGGGGGT 58.772 45.455 0.00 0.00 0.00 4.95
1468 1755 2.870175 TGTTGATGTGTTTAGGGGGTG 58.130 47.619 0.00 0.00 0.00 4.61
1469 1756 2.175931 TGTTGATGTGTTTAGGGGGTGT 59.824 45.455 0.00 0.00 0.00 4.16
1470 1757 3.394940 TGTTGATGTGTTTAGGGGGTGTA 59.605 43.478 0.00 0.00 0.00 2.90
1471 1758 3.706600 TGATGTGTTTAGGGGGTGTAC 57.293 47.619 0.00 0.00 0.00 2.90
1472 1759 2.306512 TGATGTGTTTAGGGGGTGTACC 59.693 50.000 0.00 0.00 39.11 3.34
1473 1760 0.686224 TGTGTTTAGGGGGTGTACCG 59.314 55.000 0.00 0.00 41.60 4.02
1474 1761 0.975887 GTGTTTAGGGGGTGTACCGA 59.024 55.000 0.00 0.00 41.60 4.69
1475 1762 1.347378 GTGTTTAGGGGGTGTACCGAA 59.653 52.381 0.00 0.00 41.60 4.30
1476 1763 1.624813 TGTTTAGGGGGTGTACCGAAG 59.375 52.381 0.00 0.00 41.60 3.79
1477 1764 1.901833 GTTTAGGGGGTGTACCGAAGA 59.098 52.381 0.00 0.00 41.60 2.87
1478 1765 1.856629 TTAGGGGGTGTACCGAAGAG 58.143 55.000 0.00 0.00 41.60 2.85
1479 1766 1.002069 TAGGGGGTGTACCGAAGAGA 58.998 55.000 0.00 0.00 41.60 3.10
1480 1767 0.115745 AGGGGGTGTACCGAAGAGAA 59.884 55.000 0.00 0.00 41.60 2.87
1481 1768 0.978907 GGGGGTGTACCGAAGAGAAA 59.021 55.000 0.00 0.00 41.60 2.52
1482 1769 1.066358 GGGGGTGTACCGAAGAGAAAG 60.066 57.143 0.00 0.00 41.60 2.62
1483 1770 1.622312 GGGGTGTACCGAAGAGAAAGT 59.378 52.381 0.00 0.00 41.60 2.66
1484 1771 2.612221 GGGGTGTACCGAAGAGAAAGTG 60.612 54.545 0.00 0.00 41.60 3.16
1514 1801 5.551760 ATTTGATTGAGTTAGTTGAGGCG 57.448 39.130 0.00 0.00 0.00 5.52
1517 1804 0.394938 TTGAGTTAGTTGAGGCGCCA 59.605 50.000 31.54 5.56 0.00 5.69
1519 1806 1.003118 TGAGTTAGTTGAGGCGCCATT 59.997 47.619 31.54 9.09 0.00 3.16
1520 1807 2.084546 GAGTTAGTTGAGGCGCCATTT 58.915 47.619 31.54 8.11 0.00 2.32
1521 1808 3.267483 GAGTTAGTTGAGGCGCCATTTA 58.733 45.455 31.54 10.57 0.00 1.40
1522 1809 3.681593 AGTTAGTTGAGGCGCCATTTAA 58.318 40.909 31.54 15.94 0.00 1.52
1523 1810 4.076394 AGTTAGTTGAGGCGCCATTTAAA 58.924 39.130 31.54 12.57 0.00 1.52
1524 1811 4.521256 AGTTAGTTGAGGCGCCATTTAAAA 59.479 37.500 31.54 13.13 0.00 1.52
1525 1812 3.575965 AGTTGAGGCGCCATTTAAAAG 57.424 42.857 31.54 0.00 0.00 2.27
1526 1813 3.153919 AGTTGAGGCGCCATTTAAAAGA 58.846 40.909 31.54 0.12 0.00 2.52
1527 1814 3.763897 AGTTGAGGCGCCATTTAAAAGAT 59.236 39.130 31.54 2.38 0.00 2.40
1528 1815 4.105486 GTTGAGGCGCCATTTAAAAGATC 58.895 43.478 31.54 13.76 0.00 2.75
1529 1816 2.687935 TGAGGCGCCATTTAAAAGATCC 59.312 45.455 31.54 0.00 0.00 3.36
1530 1817 2.031870 AGGCGCCATTTAAAAGATCCC 58.968 47.619 31.54 0.00 0.00 3.85
1549 1836 6.539103 AGATCCCTTTTAATCGAGTTAGTTGC 59.461 38.462 0.00 0.00 0.00 4.17
1551 1838 4.698304 CCCTTTTAATCGAGTTAGTTGCCA 59.302 41.667 0.00 0.00 0.00 4.92
1552 1839 5.163754 CCCTTTTAATCGAGTTAGTTGCCAG 60.164 44.000 0.00 0.00 0.00 4.85
1558 1845 4.067972 TCGAGTTAGTTGCCAGAAAGTT 57.932 40.909 0.00 0.00 0.00 2.66
1577 1864 8.678199 AGAAAGTTCCTGGATTCGAAATTATTC 58.322 33.333 0.00 0.00 0.00 1.75
1579 1866 6.423182 AGTTCCTGGATTCGAAATTATTCCA 58.577 36.000 14.93 14.93 35.29 3.53
1586 1873 5.748630 GGATTCGAAATTATTCCAAGGCAAC 59.251 40.000 0.00 0.00 31.52 4.17
1595 1882 9.956640 AAATTATTCCAAGGCAACAATCATAAA 57.043 25.926 0.00 0.00 41.41 1.40
1806 2104 3.182572 GCAGATGTTCGGCGATACTTTAG 59.817 47.826 11.76 7.98 0.00 1.85
1808 2106 1.930567 TGTTCGGCGATACTTTAGCC 58.069 50.000 11.76 0.00 46.88 3.93
1909 2207 4.472702 GTGAGTAAGTCGCCCGAC 57.527 61.111 12.54 12.54 44.86 4.79
2029 2327 2.798145 GCGTCACCTTCAAAACTTTGGG 60.798 50.000 2.49 0.08 38.66 4.12
2209 2507 0.396811 GCCTATCCGCCACCAGTTAT 59.603 55.000 0.00 0.00 0.00 1.89
2246 2544 2.113860 GCACAAGAGGCCTGATGTTA 57.886 50.000 12.00 0.00 0.00 2.41
2248 2546 2.162408 GCACAAGAGGCCTGATGTTAAC 59.838 50.000 12.00 3.17 0.00 2.01
2303 2601 0.887933 GGTGGATGTTTTGGACGCAT 59.112 50.000 0.00 0.00 0.00 4.73
2310 2608 0.110373 GTTTTGGACGCATCACCGAC 60.110 55.000 0.00 0.00 0.00 4.79
2317 2615 3.490759 GCATCACCGACGCACCTG 61.491 66.667 0.00 0.00 0.00 4.00
2329 2627 1.016130 CGCACCTGGTAGAACTGCAG 61.016 60.000 13.48 13.48 0.00 4.41
2419 2717 0.250234 ATGGTGCTCAGCGCTTAAGA 59.750 50.000 18.42 8.13 39.23 2.10
2458 2756 2.416972 GGTGGTCGTGATACAACTCTCC 60.417 54.545 0.00 0.00 0.00 3.71
2632 2930 1.888215 ACAACAGAGCAGATGTGGTG 58.112 50.000 0.00 0.00 45.32 4.17
2655 2954 0.540365 ACATTGTTCTGCTGGGTGGG 60.540 55.000 0.00 0.00 0.00 4.61
2664 2963 3.953775 CTGGGTGGGGCACTCGTT 61.954 66.667 0.00 0.00 37.73 3.85
2735 3034 3.371595 GCTCCCCTGGTGAAAGCTAAATA 60.372 47.826 0.00 0.00 33.76 1.40
2739 3038 2.952310 CCTGGTGAAAGCTAAATAGGCC 59.048 50.000 0.00 0.00 33.76 5.19
2756 3055 2.281208 CCGTCTTGCCCGTTTCCA 60.281 61.111 0.00 0.00 0.00 3.53
2764 3063 1.243902 TGCCCGTTTCCATCACTTTC 58.756 50.000 0.00 0.00 0.00 2.62
2789 3088 2.678336 GAGGGATTGTCACGTGGAAATC 59.322 50.000 24.32 24.32 0.00 2.17
2801 3100 6.037172 GTCACGTGGAAATCTGCAGTATTAAT 59.963 38.462 17.00 0.00 0.00 1.40
2808 3107 8.710239 TGGAAATCTGCAGTATTAATACTACCA 58.290 33.333 24.29 21.30 41.44 3.25
2817 3116 6.706270 CAGTATTAATACTACCAGGCCACAAG 59.294 42.308 24.29 6.99 41.44 3.16
2825 3124 1.508088 CAGGCCACAAGCGGATTTC 59.492 57.895 5.01 0.00 45.17 2.17
2861 3160 1.620822 GGGCAACATGACCTGTTTCT 58.379 50.000 0.00 0.00 45.98 2.52
2876 3175 3.633094 TTCTCCTGTGCTCTCGCGC 62.633 63.158 0.00 0.00 46.63 6.86
2946 3245 1.757340 CTGGGACTCCGGGGTCTAC 60.757 68.421 32.76 25.07 35.76 2.59
2966 3265 2.187946 CTGGTCCATCCGCCTCAC 59.812 66.667 0.00 0.00 39.52 3.51
3019 3318 0.865769 CTCCCGGTCAGAAAACAACG 59.134 55.000 0.00 0.00 0.00 4.10
3033 3332 3.602390 AACAACGAGGAATTTGACGTG 57.398 42.857 0.00 0.00 38.92 4.49
3068 3367 1.512926 CGGGCTTCCCTTATTCGATG 58.487 55.000 0.00 0.00 42.67 3.84
3088 3387 1.409241 GCAATCAGGGGAGCAATGAGA 60.409 52.381 0.00 0.00 0.00 3.27
3096 3395 2.356125 GGGGAGCAATGAGAAGCTGTTA 60.356 50.000 0.00 0.00 42.04 2.41
3097 3396 2.680339 GGGAGCAATGAGAAGCTGTTAC 59.320 50.000 0.00 0.00 42.04 2.50
3101 3403 2.094417 GCAATGAGAAGCTGTTACGGAC 59.906 50.000 0.00 0.00 0.00 4.79
3215 3517 0.809241 AGGCGTCGTAGAGTAGACCG 60.809 60.000 0.00 0.00 36.95 4.79
3348 3650 1.749063 CAGCTGTGCCATGATGTCATT 59.251 47.619 5.25 0.00 33.61 2.57
3386 3688 1.763192 GCTAGGGTCCATAGAAGGCCT 60.763 57.143 14.82 0.00 0.00 5.19
3445 3747 7.323420 TCTGGCTGTATCCGATATGAATAAAG 58.677 38.462 0.00 0.00 0.00 1.85
3453 3755 9.509855 GTATCCGATATGAATAAAGCACTAGAG 57.490 37.037 0.00 0.00 0.00 2.43
3473 3775 2.769652 AAAGGATGCGAGCTTGCCCA 62.770 55.000 23.34 5.91 0.00 5.36
3503 3805 3.645212 CTCACCATGAGGACACCTGATAT 59.355 47.826 0.00 0.00 40.71 1.63
3524 3826 8.654094 TGATATGACAACACTTCATATGATCCT 58.346 33.333 6.17 0.00 43.64 3.24
3562 3864 1.012486 GTTGTGCTACGCGGCTTACT 61.012 55.000 12.47 0.00 0.00 2.24
3564 3866 2.165301 GTGCTACGCGGCTTACTGG 61.165 63.158 12.47 0.00 0.00 4.00
3636 3938 1.837439 ACCATCGTTGCCCTCTTCATA 59.163 47.619 0.00 0.00 0.00 2.15
3653 3955 7.013846 CCTCTTCATACTCTACTACTCAAAGGG 59.986 44.444 0.00 0.00 0.00 3.95
3802 4104 3.740832 CGTTCTTACTGATGTTGTGCTCA 59.259 43.478 0.00 0.00 0.00 4.26
3807 4109 3.413846 ACTGATGTTGTGCTCATCTGT 57.586 42.857 10.86 10.86 43.93 3.41
3843 4145 1.339235 CTTGCCAAACTTCGCGCATG 61.339 55.000 8.75 0.00 0.00 4.06
3944 4246 2.614057 CAGTCGTTTGCTTCTTCTGGTT 59.386 45.455 0.00 0.00 0.00 3.67
4010 4312 2.484264 GCTATTCCATGTTGTATCGGGC 59.516 50.000 0.00 0.00 0.00 6.13
4018 4320 4.142182 CCATGTTGTATCGGGCTTCATTTT 60.142 41.667 0.00 0.00 0.00 1.82
4021 4323 4.520874 TGTTGTATCGGGCTTCATTTTCAA 59.479 37.500 0.00 0.00 0.00 2.69
4024 4326 4.946772 TGTATCGGGCTTCATTTTCAATGA 59.053 37.500 0.00 0.00 0.00 2.57
4033 4335 6.370718 GGCTTCATTTTCAATGAATTCTTGCT 59.629 34.615 11.39 0.00 37.40 3.91
4038 4340 9.938670 TCATTTTCAATGAATTCTTGCTTTTTG 57.061 25.926 7.05 0.00 0.00 2.44
4039 4341 8.687301 CATTTTCAATGAATTCTTGCTTTTTGC 58.313 29.630 7.05 0.00 43.25 3.68
4412 4722 5.358160 CCTGACTTAGGGAAAATAGGCAAAG 59.642 44.000 0.00 0.00 43.33 2.77
4415 4725 6.433093 TGACTTAGGGAAAATAGGCAAAGAAC 59.567 38.462 0.00 0.00 0.00 3.01
4421 4731 4.988540 GGAAAATAGGCAAAGAACCAACAC 59.011 41.667 0.00 0.00 0.00 3.32
4563 4875 2.360165 ACGTCTGTTGTCTCGTAACCTT 59.640 45.455 0.00 0.00 34.78 3.50
4624 4938 0.591170 GAACAACCCCATGACACACG 59.409 55.000 0.00 0.00 0.00 4.49
4732 5051 7.462856 GCAAAGCAATACGATATAGTCCATACG 60.463 40.741 0.00 0.00 0.00 3.06
4806 5125 4.047834 TGCCTCTCGCACTTTGTG 57.952 55.556 0.00 0.00 44.64 3.33
4825 5147 2.240612 GACCACTTCAATGCCGTCGC 62.241 60.000 0.00 0.00 0.00 5.19
4883 5205 4.012374 AGCAACTTGAAGGTCACCATATG 58.988 43.478 0.00 0.00 0.00 1.78
4884 5206 3.758554 GCAACTTGAAGGTCACCATATGT 59.241 43.478 0.00 0.00 0.00 2.29
4889 5212 5.104900 ACTTGAAGGTCACCATATGTACCTC 60.105 44.000 17.37 12.83 37.67 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 5.741510 TCATGAATGTCGAAAAACACAACAC 59.258 36.000 0.00 0.00 30.55 3.32
44 45 6.863126 AGGTCATTTCATGAATGTCGAAAAAC 59.137 34.615 9.40 2.97 44.46 2.43
50 51 5.106594 TGTTGAGGTCATTTCATGAATGTCG 60.107 40.000 9.40 0.00 44.46 4.35
194 209 1.153745 GCCGATTCACTGTCGCTCT 60.154 57.895 0.00 0.00 37.75 4.09
196 211 2.125512 GGCCGATTCACTGTCGCT 60.126 61.111 0.00 0.00 37.75 4.93
266 281 8.499967 TCATCGATTTGAAATAAGTTCACGAAA 58.500 29.630 0.00 0.00 46.09 3.46
270 285 9.612620 AAGTTCATCGATTTGAAATAAGTTCAC 57.387 29.630 3.10 0.00 46.09 3.18
357 438 1.098712 GCCCTGGAACACACGAACAA 61.099 55.000 0.00 0.00 0.00 2.83
426 507 1.000060 CAGTCGGACGTCCCTAACAAA 60.000 52.381 28.52 2.98 0.00 2.83
435 516 3.934391 CTTGGCCCAGTCGGACGTC 62.934 68.421 7.13 7.13 46.69 4.34
448 693 0.727398 GCCATAGACGACAACTTGGC 59.273 55.000 0.00 0.00 42.40 4.52
473 718 6.977213 ACCTCAAAATACTTTTTATGCACGT 58.023 32.000 0.00 0.00 33.29 4.49
538 797 3.181506 GCTTTTCCTAGGCGTTTCATCAG 60.182 47.826 2.96 0.00 0.00 2.90
580 845 1.760192 ATGCCTCCATTCACTTGAGC 58.240 50.000 0.00 0.00 0.00 4.26
593 860 6.799926 TTTTCTAAAATGCCAAAATGCCTC 57.200 33.333 0.00 0.00 0.00 4.70
689 961 6.946583 AGTTTTATGGTTAGAGGAAGGAAACC 59.053 38.462 0.00 0.00 41.45 3.27
690 962 7.997773 AGTTTTATGGTTAGAGGAAGGAAAC 57.002 36.000 0.00 0.00 0.00 2.78
753 1028 8.670135 CGATCTAGTGACCTCTCGAATAATAAT 58.330 37.037 0.00 0.00 0.00 1.28
816 1097 0.982852 TCGGCCCATCAATCTGACCT 60.983 55.000 0.00 0.00 0.00 3.85
817 1098 0.533755 CTCGGCCCATCAATCTGACC 60.534 60.000 0.00 0.00 0.00 4.02
818 1099 0.533755 CCTCGGCCCATCAATCTGAC 60.534 60.000 0.00 0.00 0.00 3.51
819 1100 1.699054 CCCTCGGCCCATCAATCTGA 61.699 60.000 0.00 0.00 0.00 3.27
836 1123 1.040339 TGGTGCACAAAACCAGTCCC 61.040 55.000 20.43 0.00 42.82 4.46
849 1136 1.303236 AACGCAATAGGCTGGTGCA 60.303 52.632 19.98 0.00 41.67 4.57
861 1148 9.632807 AATAGCACAAAATTTATAAGAACGCAA 57.367 25.926 0.00 0.00 0.00 4.85
905 1192 0.756903 AACTTGCCACTCCACTACGT 59.243 50.000 0.00 0.00 0.00 3.57
921 1208 1.887198 CGTCCTCCAGACTACACAACT 59.113 52.381 0.00 0.00 43.91 3.16
922 1209 1.884579 TCGTCCTCCAGACTACACAAC 59.115 52.381 0.00 0.00 43.91 3.32
923 1210 2.160205 CTCGTCCTCCAGACTACACAA 58.840 52.381 0.00 0.00 43.91 3.33
946 1233 1.108776 CACGGGGAATCGAACTCCTA 58.891 55.000 14.64 0.00 33.11 2.94
948 1235 1.814169 GCACGGGGAATCGAACTCC 60.814 63.158 8.14 8.14 0.00 3.85
961 1248 3.078725 GATACGCGTTGTGGCACGG 62.079 63.158 20.78 5.97 40.69 4.94
964 1251 2.766875 TTCCGATACGCGTTGTGGCA 62.767 55.000 20.78 4.07 38.67 4.92
965 1252 2.020836 CTTCCGATACGCGTTGTGGC 62.021 60.000 20.78 1.44 38.67 5.01
966 1253 0.734942 ACTTCCGATACGCGTTGTGG 60.735 55.000 20.78 17.05 38.67 4.17
967 1254 0.638746 GACTTCCGATACGCGTTGTG 59.361 55.000 20.78 7.25 38.67 3.33
968 1255 0.524862 AGACTTCCGATACGCGTTGT 59.475 50.000 20.78 6.84 38.67 3.32
969 1256 2.107178 GTAGACTTCCGATACGCGTTG 58.893 52.381 20.78 8.08 38.67 4.10
970 1257 2.012673 AGTAGACTTCCGATACGCGTT 58.987 47.619 20.78 5.14 38.67 4.84
971 1258 1.661341 AGTAGACTTCCGATACGCGT 58.339 50.000 19.17 19.17 38.67 6.01
972 1259 2.752144 AAGTAGACTTCCGATACGCG 57.248 50.000 3.53 3.53 40.47 6.01
973 1260 5.801947 TGTTTAAAGTAGACTTCCGATACGC 59.198 40.000 0.00 0.00 34.61 4.42
974 1261 6.471519 CCTGTTTAAAGTAGACTTCCGATACG 59.528 42.308 0.00 0.00 34.61 3.06
975 1262 7.487509 GTCCTGTTTAAAGTAGACTTCCGATAC 59.512 40.741 0.00 0.00 34.61 2.24
976 1263 7.363268 GGTCCTGTTTAAAGTAGACTTCCGATA 60.363 40.741 9.88 0.00 34.61 2.92
977 1264 6.396450 GTCCTGTTTAAAGTAGACTTCCGAT 58.604 40.000 0.00 0.00 34.61 4.18
978 1265 5.279156 GGTCCTGTTTAAAGTAGACTTCCGA 60.279 44.000 9.88 0.00 34.61 4.55
979 1266 4.928020 GGTCCTGTTTAAAGTAGACTTCCG 59.072 45.833 9.88 0.00 34.61 4.30
980 1267 5.861727 TGGTCCTGTTTAAAGTAGACTTCC 58.138 41.667 9.88 0.00 34.61 3.46
981 1268 7.159372 TGATGGTCCTGTTTAAAGTAGACTTC 58.841 38.462 9.88 8.45 34.61 3.01
982 1269 7.074653 TGATGGTCCTGTTTAAAGTAGACTT 57.925 36.000 9.88 0.00 37.91 3.01
983 1270 6.681729 TGATGGTCCTGTTTAAAGTAGACT 57.318 37.500 9.88 0.00 0.00 3.24
984 1271 6.879458 ACATGATGGTCCTGTTTAAAGTAGAC 59.121 38.462 0.00 0.00 0.00 2.59
985 1272 7.016153 ACATGATGGTCCTGTTTAAAGTAGA 57.984 36.000 0.00 0.00 0.00 2.59
986 1273 7.308782 GACATGATGGTCCTGTTTAAAGTAG 57.691 40.000 0.00 0.00 0.00 2.57
999 1286 7.175641 CCCTTCATAATAAAGGACATGATGGTC 59.824 40.741 0.00 0.00 45.15 4.02
1000 1287 7.006509 CCCTTCATAATAAAGGACATGATGGT 58.993 38.462 0.00 0.00 45.15 3.55
1001 1288 6.435277 CCCCTTCATAATAAAGGACATGATGG 59.565 42.308 0.00 7.87 45.15 3.51
1002 1289 7.006509 ACCCCTTCATAATAAAGGACATGATG 58.993 38.462 0.00 0.00 45.15 3.07
1003 1290 7.166758 ACCCCTTCATAATAAAGGACATGAT 57.833 36.000 0.00 0.00 45.15 2.45
1004 1291 6.590656 ACCCCTTCATAATAAAGGACATGA 57.409 37.500 0.00 0.00 45.15 3.07
1007 1294 8.611257 CCATATACCCCTTCATAATAAAGGACA 58.389 37.037 3.49 0.00 45.15 4.02
1008 1295 8.053355 CCCATATACCCCTTCATAATAAAGGAC 58.947 40.741 3.49 0.00 45.15 3.85
1009 1296 7.185671 CCCCATATACCCCTTCATAATAAAGGA 59.814 40.741 3.49 0.00 45.15 3.36
1010 1297 7.185671 TCCCCATATACCCCTTCATAATAAAGG 59.814 40.741 0.00 0.00 42.52 3.11
1011 1298 8.170121 TCCCCATATACCCCTTCATAATAAAG 57.830 38.462 0.00 0.00 0.00 1.85
1012 1299 8.541277 TTCCCCATATACCCCTTCATAATAAA 57.459 34.615 0.00 0.00 0.00 1.40
1013 1300 7.746865 ACTTCCCCATATACCCCTTCATAATAA 59.253 37.037 0.00 0.00 0.00 1.40
1014 1301 7.183839 CACTTCCCCATATACCCCTTCATAATA 59.816 40.741 0.00 0.00 0.00 0.98
1015 1302 6.011628 CACTTCCCCATATACCCCTTCATAAT 60.012 42.308 0.00 0.00 0.00 1.28
1016 1303 5.312178 CACTTCCCCATATACCCCTTCATAA 59.688 44.000 0.00 0.00 0.00 1.90
1017 1304 4.849810 CACTTCCCCATATACCCCTTCATA 59.150 45.833 0.00 0.00 0.00 2.15
1018 1305 3.657727 CACTTCCCCATATACCCCTTCAT 59.342 47.826 0.00 0.00 0.00 2.57
1019 1306 3.053077 CACTTCCCCATATACCCCTTCA 58.947 50.000 0.00 0.00 0.00 3.02
1020 1307 2.224793 GCACTTCCCCATATACCCCTTC 60.225 54.545 0.00 0.00 0.00 3.46
1021 1308 1.780919 GCACTTCCCCATATACCCCTT 59.219 52.381 0.00 0.00 0.00 3.95
1022 1309 1.346046 TGCACTTCCCCATATACCCCT 60.346 52.381 0.00 0.00 0.00 4.79
1023 1310 1.145571 TGCACTTCCCCATATACCCC 58.854 55.000 0.00 0.00 0.00 4.95
1024 1311 2.555227 CCATGCACTTCCCCATATACCC 60.555 54.545 0.00 0.00 0.00 3.69
1025 1312 2.375174 TCCATGCACTTCCCCATATACC 59.625 50.000 0.00 0.00 0.00 2.73
1026 1313 3.788227 TCCATGCACTTCCCCATATAC 57.212 47.619 0.00 0.00 0.00 1.47
1027 1314 3.915711 TCATCCATGCACTTCCCCATATA 59.084 43.478 0.00 0.00 0.00 0.86
1028 1315 2.718062 TCATCCATGCACTTCCCCATAT 59.282 45.455 0.00 0.00 0.00 1.78
1029 1316 2.134354 TCATCCATGCACTTCCCCATA 58.866 47.619 0.00 0.00 0.00 2.74
1030 1317 0.928505 TCATCCATGCACTTCCCCAT 59.071 50.000 0.00 0.00 0.00 4.00
1031 1318 0.703488 TTCATCCATGCACTTCCCCA 59.297 50.000 0.00 0.00 0.00 4.96
1032 1319 1.106285 GTTCATCCATGCACTTCCCC 58.894 55.000 0.00 0.00 0.00 4.81
1033 1320 1.106285 GGTTCATCCATGCACTTCCC 58.894 55.000 0.00 0.00 35.97 3.97
1034 1321 1.106285 GGGTTCATCCATGCACTTCC 58.894 55.000 0.00 0.00 38.11 3.46
1035 1322 0.734889 CGGGTTCATCCATGCACTTC 59.265 55.000 0.00 0.00 38.11 3.01
1036 1323 0.680921 CCGGGTTCATCCATGCACTT 60.681 55.000 0.00 0.00 38.11 3.16
1037 1324 1.077501 CCGGGTTCATCCATGCACT 60.078 57.895 0.00 0.00 38.11 4.40
1038 1325 0.466189 ATCCGGGTTCATCCATGCAC 60.466 55.000 0.00 0.00 38.11 4.57
1039 1326 1.135960 TATCCGGGTTCATCCATGCA 58.864 50.000 0.00 0.00 38.11 3.96
1040 1327 1.202758 TGTATCCGGGTTCATCCATGC 60.203 52.381 0.00 0.00 38.11 4.06
1041 1328 2.928801 TGTATCCGGGTTCATCCATG 57.071 50.000 0.00 0.00 38.11 3.66
1042 1329 4.782691 TCATATGTATCCGGGTTCATCCAT 59.217 41.667 10.45 0.00 38.11 3.41
1043 1330 4.164204 TCATATGTATCCGGGTTCATCCA 58.836 43.478 10.45 0.00 38.11 3.41
1044 1331 4.819105 TCATATGTATCCGGGTTCATCC 57.181 45.455 10.45 0.00 0.00 3.51
1045 1332 4.935808 GGTTCATATGTATCCGGGTTCATC 59.064 45.833 10.45 0.00 0.00 2.92
1046 1333 4.263331 GGGTTCATATGTATCCGGGTTCAT 60.263 45.833 11.88 11.88 0.00 2.57
1047 1334 3.071892 GGGTTCATATGTATCCGGGTTCA 59.928 47.826 0.00 0.00 0.00 3.18
1048 1335 3.071892 TGGGTTCATATGTATCCGGGTTC 59.928 47.826 0.00 0.00 0.00 3.62
1049 1336 3.050089 TGGGTTCATATGTATCCGGGTT 58.950 45.455 0.00 0.00 0.00 4.11
1050 1337 2.370849 GTGGGTTCATATGTATCCGGGT 59.629 50.000 0.00 0.00 0.00 5.28
1051 1338 2.637872 AGTGGGTTCATATGTATCCGGG 59.362 50.000 0.00 0.00 0.00 5.73
1052 1339 4.351874 AAGTGGGTTCATATGTATCCGG 57.648 45.455 7.10 0.00 0.00 5.14
1053 1340 5.364778 TCAAAGTGGGTTCATATGTATCCG 58.635 41.667 7.10 0.00 0.00 4.18
1054 1341 7.639113 TTTCAAAGTGGGTTCATATGTATCC 57.361 36.000 4.72 4.72 0.00 2.59
1055 1342 9.353999 GTTTTTCAAAGTGGGTTCATATGTATC 57.646 33.333 1.90 0.00 0.00 2.24
1056 1343 8.865090 TGTTTTTCAAAGTGGGTTCATATGTAT 58.135 29.630 1.90 0.00 0.00 2.29
1057 1344 8.138712 GTGTTTTTCAAAGTGGGTTCATATGTA 58.861 33.333 1.90 0.00 0.00 2.29
1058 1345 6.983890 GTGTTTTTCAAAGTGGGTTCATATGT 59.016 34.615 1.90 0.00 0.00 2.29
1059 1346 6.983307 TGTGTTTTTCAAAGTGGGTTCATATG 59.017 34.615 0.00 0.00 0.00 1.78
1060 1347 7.118496 TGTGTTTTTCAAAGTGGGTTCATAT 57.882 32.000 0.00 0.00 0.00 1.78
1061 1348 6.531503 TGTGTTTTTCAAAGTGGGTTCATA 57.468 33.333 0.00 0.00 0.00 2.15
1062 1349 5.413309 TGTGTTTTTCAAAGTGGGTTCAT 57.587 34.783 0.00 0.00 0.00 2.57
1063 1350 4.873746 TGTGTTTTTCAAAGTGGGTTCA 57.126 36.364 0.00 0.00 0.00 3.18
1064 1351 6.593770 AGAAATGTGTTTTTCAAAGTGGGTTC 59.406 34.615 0.00 0.00 37.93 3.62
1065 1352 6.472016 AGAAATGTGTTTTTCAAAGTGGGTT 58.528 32.000 0.00 0.00 37.93 4.11
1066 1353 6.048732 AGAAATGTGTTTTTCAAAGTGGGT 57.951 33.333 0.00 0.00 37.93 4.51
1067 1354 8.485976 TTTAGAAATGTGTTTTTCAAAGTGGG 57.514 30.769 0.00 0.00 37.93 4.61
1068 1355 9.919348 CATTTAGAAATGTGTTTTTCAAAGTGG 57.081 29.630 6.79 0.00 40.61 4.00
1069 1356 9.424659 GCATTTAGAAATGTGTTTTTCAAAGTG 57.575 29.630 14.72 0.00 45.77 3.16
1070 1357 9.382275 AGCATTTAGAAATGTGTTTTTCAAAGT 57.618 25.926 14.72 0.00 45.77 2.66
1099 1386 4.220602 CCATGTCTCCCTTTTCGGATTTTT 59.779 41.667 0.00 0.00 33.16 1.94
1100 1387 3.763897 CCATGTCTCCCTTTTCGGATTTT 59.236 43.478 0.00 0.00 33.16 1.82
1101 1388 3.356290 CCATGTCTCCCTTTTCGGATTT 58.644 45.455 0.00 0.00 33.16 2.17
1102 1389 2.357154 CCCATGTCTCCCTTTTCGGATT 60.357 50.000 0.00 0.00 33.16 3.01
1103 1390 1.212935 CCCATGTCTCCCTTTTCGGAT 59.787 52.381 0.00 0.00 33.16 4.18
1104 1391 0.618458 CCCATGTCTCCCTTTTCGGA 59.382 55.000 0.00 0.00 33.16 4.55
1105 1392 0.328258 ACCCATGTCTCCCTTTTCGG 59.672 55.000 0.00 0.00 0.00 4.30
1106 1393 2.629051 GTACCCATGTCTCCCTTTTCG 58.371 52.381 0.00 0.00 0.00 3.46
1107 1394 2.027469 ACGTACCCATGTCTCCCTTTTC 60.027 50.000 0.00 0.00 0.00 2.29
1108 1395 1.982958 ACGTACCCATGTCTCCCTTTT 59.017 47.619 0.00 0.00 0.00 2.27
1109 1396 1.652947 ACGTACCCATGTCTCCCTTT 58.347 50.000 0.00 0.00 0.00 3.11
1110 1397 2.537633 TACGTACCCATGTCTCCCTT 57.462 50.000 0.00 0.00 0.00 3.95
1111 1398 2.769602 ATACGTACCCATGTCTCCCT 57.230 50.000 0.00 0.00 0.00 4.20
1112 1399 2.696707 TGAATACGTACCCATGTCTCCC 59.303 50.000 0.00 0.00 0.00 4.30
1113 1400 4.202223 ACATGAATACGTACCCATGTCTCC 60.202 45.833 26.25 0.00 44.17 3.71
1114 1401 4.945246 ACATGAATACGTACCCATGTCTC 58.055 43.478 26.25 6.07 44.17 3.36
1115 1402 5.128827 AGAACATGAATACGTACCCATGTCT 59.871 40.000 29.26 24.95 46.00 3.41
1116 1403 5.357257 AGAACATGAATACGTACCCATGTC 58.643 41.667 29.26 23.87 46.00 3.06
1118 1405 6.929049 ACATAGAACATGAATACGTACCCATG 59.071 38.462 25.32 25.32 41.40 3.66
1119 1406 6.929049 CACATAGAACATGAATACGTACCCAT 59.071 38.462 0.00 1.30 0.00 4.00
1120 1407 6.277605 CACATAGAACATGAATACGTACCCA 58.722 40.000 0.00 0.00 0.00 4.51
1121 1408 5.176958 GCACATAGAACATGAATACGTACCC 59.823 44.000 0.00 0.00 0.00 3.69
1122 1409 5.107989 CGCACATAGAACATGAATACGTACC 60.108 44.000 0.00 0.00 0.00 3.34
1123 1410 5.457799 ACGCACATAGAACATGAATACGTAC 59.542 40.000 0.00 0.00 0.00 3.67
1124 1411 5.457473 CACGCACATAGAACATGAATACGTA 59.543 40.000 0.00 0.00 0.00 3.57
1125 1412 4.267690 CACGCACATAGAACATGAATACGT 59.732 41.667 0.00 0.00 0.00 3.57
1126 1413 4.751172 CACGCACATAGAACATGAATACG 58.249 43.478 0.00 0.00 0.00 3.06
1127 1414 4.033932 TGCACGCACATAGAACATGAATAC 59.966 41.667 0.00 0.00 0.00 1.89
1128 1415 4.187694 TGCACGCACATAGAACATGAATA 58.812 39.130 0.00 0.00 0.00 1.75
1129 1416 3.009026 TGCACGCACATAGAACATGAAT 58.991 40.909 0.00 0.00 0.00 2.57
1130 1417 2.421619 TGCACGCACATAGAACATGAA 58.578 42.857 0.00 0.00 0.00 2.57
1131 1418 2.091852 TGCACGCACATAGAACATGA 57.908 45.000 0.00 0.00 0.00 3.07
1132 1419 4.534794 TTATGCACGCACATAGAACATG 57.465 40.909 0.00 0.00 34.15 3.21
1133 1420 4.635765 ACTTTATGCACGCACATAGAACAT 59.364 37.500 0.00 0.00 34.15 2.71
1134 1421 4.000325 ACTTTATGCACGCACATAGAACA 59.000 39.130 0.00 0.00 34.15 3.18
1135 1422 4.600012 ACTTTATGCACGCACATAGAAC 57.400 40.909 0.00 0.00 34.15 3.01
1136 1423 5.180304 TGAAACTTTATGCACGCACATAGAA 59.820 36.000 0.00 0.00 34.15 2.10
1137 1424 4.693095 TGAAACTTTATGCACGCACATAGA 59.307 37.500 0.00 0.00 34.15 1.98
1138 1425 4.788100 GTGAAACTTTATGCACGCACATAG 59.212 41.667 0.00 0.00 34.15 2.23
1139 1426 4.667922 CGTGAAACTTTATGCACGCACATA 60.668 41.667 0.00 0.00 45.81 2.29
1140 1427 3.564511 GTGAAACTTTATGCACGCACAT 58.435 40.909 0.00 0.00 0.00 3.21
1141 1428 2.601029 CGTGAAACTTTATGCACGCACA 60.601 45.455 0.00 0.00 45.81 4.57
1142 1429 1.969256 CGTGAAACTTTATGCACGCAC 59.031 47.619 0.00 0.00 45.81 5.34
1143 1430 2.308347 CGTGAAACTTTATGCACGCA 57.692 45.000 0.00 0.00 45.81 5.24
1146 1433 7.593644 AGTTATTTTCCGTGAAACTTTATGCAC 59.406 33.333 0.00 0.00 30.83 4.57
1147 1434 7.653647 AGTTATTTTCCGTGAAACTTTATGCA 58.346 30.769 0.00 0.00 30.83 3.96
1148 1435 8.515473 AAGTTATTTTCCGTGAAACTTTATGC 57.485 30.769 0.00 0.00 37.13 3.14
1173 1460 0.615331 TTTGCACAGGCCACCAAAAA 59.385 45.000 5.01 0.00 40.13 1.94
1174 1461 0.615331 TTTTGCACAGGCCACCAAAA 59.385 45.000 5.01 11.68 40.13 2.44
1175 1462 0.615331 TTTTTGCACAGGCCACCAAA 59.385 45.000 5.01 5.77 40.13 3.28
1176 1463 2.290847 TTTTTGCACAGGCCACCAA 58.709 47.368 5.01 0.00 40.13 3.67
1177 1464 4.040645 TTTTTGCACAGGCCACCA 57.959 50.000 5.01 0.00 40.13 4.17
1200 1487 4.385358 AGCGTTTCAGGACACAATTTTT 57.615 36.364 0.00 0.00 0.00 1.94
1201 1488 5.705609 ATAGCGTTTCAGGACACAATTTT 57.294 34.783 0.00 0.00 0.00 1.82
1202 1489 5.705609 AATAGCGTTTCAGGACACAATTT 57.294 34.783 0.00 0.00 0.00 1.82
1203 1490 5.705609 AAATAGCGTTTCAGGACACAATT 57.294 34.783 0.00 0.00 0.00 2.32
1204 1491 6.811253 TTAAATAGCGTTTCAGGACACAAT 57.189 33.333 0.00 0.00 0.00 2.71
1205 1492 6.621316 TTTAAATAGCGTTTCAGGACACAA 57.379 33.333 0.00 0.00 0.00 3.33
1206 1493 6.621316 TTTTAAATAGCGTTTCAGGACACA 57.379 33.333 0.00 0.00 0.00 3.72
1207 1494 5.567915 GCTTTTAAATAGCGTTTCAGGACAC 59.432 40.000 6.62 0.00 0.00 3.67
1208 1495 5.239744 TGCTTTTAAATAGCGTTTCAGGACA 59.760 36.000 13.83 0.00 41.54 4.02
1209 1496 5.567915 GTGCTTTTAAATAGCGTTTCAGGAC 59.432 40.000 13.83 3.40 41.54 3.85
1210 1497 5.472137 AGTGCTTTTAAATAGCGTTTCAGGA 59.528 36.000 13.83 0.00 41.54 3.86
1211 1498 5.569059 CAGTGCTTTTAAATAGCGTTTCAGG 59.431 40.000 13.83 1.77 41.54 3.86
1212 1499 6.370593 TCAGTGCTTTTAAATAGCGTTTCAG 58.629 36.000 13.83 0.00 41.54 3.02
1213 1500 6.307031 TCAGTGCTTTTAAATAGCGTTTCA 57.693 33.333 13.83 0.00 41.54 2.69
1214 1501 7.617533 TTTCAGTGCTTTTAAATAGCGTTTC 57.382 32.000 13.83 7.56 41.54 2.78
1215 1502 8.587952 AATTTCAGTGCTTTTAAATAGCGTTT 57.412 26.923 13.83 0.00 41.54 3.60
1216 1503 8.487176 CAAATTTCAGTGCTTTTAAATAGCGTT 58.513 29.630 13.83 5.74 41.54 4.84
1217 1504 7.651704 ACAAATTTCAGTGCTTTTAAATAGCGT 59.348 29.630 13.83 5.27 41.54 5.07
1218 1505 8.006741 ACAAATTTCAGTGCTTTTAAATAGCG 57.993 30.769 13.83 4.70 41.54 4.26
1219 1506 9.196552 AGACAAATTTCAGTGCTTTTAAATAGC 57.803 29.630 12.59 12.59 39.10 2.97
1251 1538 4.075682 TGTCTTTTTGTGTTGTCTCCACA 58.924 39.130 0.00 0.00 40.87 4.17
1252 1539 4.695217 TGTCTTTTTGTGTTGTCTCCAC 57.305 40.909 0.00 0.00 0.00 4.02
1253 1540 5.913137 AATGTCTTTTTGTGTTGTCTCCA 57.087 34.783 0.00 0.00 0.00 3.86
1254 1541 7.595311 AAAAATGTCTTTTTGTGTTGTCTCC 57.405 32.000 0.00 0.00 41.77 3.71
1281 1568 2.653766 CGCGGCGCAAAGTTTTGT 60.654 55.556 32.61 0.00 40.24 2.83
1292 1579 4.681643 AAATGTGTGTGCGCGGCG 62.682 61.111 19.62 19.62 0.00 6.46
1293 1580 3.098958 CAAATGTGTGTGCGCGGC 61.099 61.111 8.83 0.00 0.00 6.53
1294 1581 2.331098 ACAAATGTGTGTGCGCGG 59.669 55.556 8.83 0.00 36.31 6.46
1300 1587 7.703197 CATGCATACATATTCACAAATGTGTGT 59.297 33.333 15.69 11.77 44.16 3.72
1301 1588 7.916450 TCATGCATACATATTCACAAATGTGTG 59.084 33.333 9.97 9.97 44.16 3.82
1302 1589 7.998580 TCATGCATACATATTCACAAATGTGT 58.001 30.769 12.87 3.13 45.65 3.72
1303 1590 8.859517 TTCATGCATACATATTCACAAATGTG 57.140 30.769 7.22 7.22 40.10 3.21
1317 1604 9.932207 AAATCAGAAGAAAATTTCATGCATACA 57.068 25.926 8.55 0.00 0.00 2.29
1368 1655 5.066246 CACCCACTTTTCACAAAATGCAATT 59.934 36.000 0.00 0.00 38.98 2.32
1369 1656 4.575645 CACCCACTTTTCACAAAATGCAAT 59.424 37.500 0.00 0.00 0.00 3.56
1370 1657 3.937706 CACCCACTTTTCACAAAATGCAA 59.062 39.130 0.00 0.00 0.00 4.08
1371 1658 3.529533 CACCCACTTTTCACAAAATGCA 58.470 40.909 0.00 0.00 0.00 3.96
1372 1659 2.287644 GCACCCACTTTTCACAAAATGC 59.712 45.455 0.00 0.00 0.00 3.56
1373 1660 3.529533 TGCACCCACTTTTCACAAAATG 58.470 40.909 0.00 0.00 0.00 2.32
1374 1661 3.450457 TCTGCACCCACTTTTCACAAAAT 59.550 39.130 0.00 0.00 0.00 1.82
1375 1662 2.828520 TCTGCACCCACTTTTCACAAAA 59.171 40.909 0.00 0.00 0.00 2.44
1376 1663 2.451490 TCTGCACCCACTTTTCACAAA 58.549 42.857 0.00 0.00 0.00 2.83
1377 1664 2.136298 TCTGCACCCACTTTTCACAA 57.864 45.000 0.00 0.00 0.00 3.33
1378 1665 1.955778 CATCTGCACCCACTTTTCACA 59.044 47.619 0.00 0.00 0.00 3.58
1379 1666 1.336240 GCATCTGCACCCACTTTTCAC 60.336 52.381 0.00 0.00 41.59 3.18
1380 1667 0.961019 GCATCTGCACCCACTTTTCA 59.039 50.000 0.00 0.00 41.59 2.69
1381 1668 0.244721 GGCATCTGCACCCACTTTTC 59.755 55.000 4.33 0.00 44.36 2.29
1382 1669 1.187567 GGGCATCTGCACCCACTTTT 61.188 55.000 5.25 0.00 46.22 2.27
1383 1670 1.607467 GGGCATCTGCACCCACTTT 60.607 57.895 5.25 0.00 46.22 2.66
1384 1671 2.036256 GGGCATCTGCACCCACTT 59.964 61.111 5.25 0.00 46.22 3.16
1390 1677 3.590466 AACCCAGGGGCATCTGCAC 62.590 63.158 11.37 0.00 45.53 4.57
1391 1678 3.267233 AACCCAGGGGCATCTGCA 61.267 61.111 11.37 0.00 44.36 4.41
1392 1679 2.440980 GAACCCAGGGGCATCTGC 60.441 66.667 11.37 0.00 39.32 4.26
1393 1680 1.077212 CTGAACCCAGGGGCATCTG 60.077 63.158 11.37 5.63 39.32 2.90
1394 1681 0.625683 ATCTGAACCCAGGGGCATCT 60.626 55.000 11.37 0.00 40.76 2.90
1395 1682 0.179006 GATCTGAACCCAGGGGCATC 60.179 60.000 11.37 5.83 40.76 3.91
1396 1683 1.925888 GATCTGAACCCAGGGGCAT 59.074 57.895 11.37 0.00 40.76 4.40
1397 1684 2.669133 CGATCTGAACCCAGGGGCA 61.669 63.158 11.37 6.80 40.76 5.36
1398 1685 2.190578 CGATCTGAACCCAGGGGC 59.809 66.667 11.37 1.48 40.76 5.80
1399 1686 1.221840 CACGATCTGAACCCAGGGG 59.778 63.158 11.37 6.87 40.76 4.79
1400 1687 1.450312 GCACGATCTGAACCCAGGG 60.450 63.158 2.85 2.85 40.76 4.45
1401 1688 1.450312 GGCACGATCTGAACCCAGG 60.450 63.158 0.00 0.00 40.76 4.45
1402 1689 1.450312 GGGCACGATCTGAACCCAG 60.450 63.158 0.00 0.00 40.52 4.45
1403 1690 2.668632 GGGCACGATCTGAACCCA 59.331 61.111 0.00 0.00 40.52 4.51
1404 1691 2.511600 CGGGCACGATCTGAACCC 60.512 66.667 0.00 0.00 44.60 4.11
1405 1692 3.195698 GCGGGCACGATCTGAACC 61.196 66.667 15.48 0.00 44.60 3.62
1406 1693 2.125512 AGCGGGCACGATCTGAAC 60.126 61.111 15.48 0.00 44.60 3.18
1419 1706 3.706373 CCCATATCCCCCGAGCGG 61.706 72.222 1.06 1.06 0.00 5.52
1420 1707 3.706373 CCCCATATCCCCCGAGCG 61.706 72.222 0.00 0.00 0.00 5.03
1421 1708 0.838987 TTACCCCATATCCCCCGAGC 60.839 60.000 0.00 0.00 0.00 5.03
1422 1709 1.838077 GATTACCCCATATCCCCCGAG 59.162 57.143 0.00 0.00 0.00 4.63
1423 1710 1.152486 TGATTACCCCATATCCCCCGA 59.848 52.381 0.00 0.00 0.00 5.14
1424 1711 1.663911 TGATTACCCCATATCCCCCG 58.336 55.000 0.00 0.00 0.00 5.73
1425 1712 2.244769 CCATGATTACCCCATATCCCCC 59.755 54.545 0.00 0.00 0.00 5.40
1426 1713 2.926329 ACCATGATTACCCCATATCCCC 59.074 50.000 0.00 0.00 0.00 4.81
1427 1714 4.202673 ACAACCATGATTACCCCATATCCC 60.203 45.833 0.00 0.00 0.00 3.85
1428 1715 4.998051 ACAACCATGATTACCCCATATCC 58.002 43.478 0.00 0.00 0.00 2.59
1429 1716 6.068010 TCAACAACCATGATTACCCCATATC 58.932 40.000 0.00 0.00 0.00 1.63
1430 1717 6.024563 TCAACAACCATGATTACCCCATAT 57.975 37.500 0.00 0.00 0.00 1.78
1431 1718 5.458451 TCAACAACCATGATTACCCCATA 57.542 39.130 0.00 0.00 0.00 2.74
1432 1719 4.329638 TCAACAACCATGATTACCCCAT 57.670 40.909 0.00 0.00 0.00 4.00
1433 1720 3.816398 TCAACAACCATGATTACCCCA 57.184 42.857 0.00 0.00 0.00 4.96
1434 1721 4.023291 ACATCAACAACCATGATTACCCC 58.977 43.478 0.00 0.00 35.38 4.95
1435 1722 4.462483 ACACATCAACAACCATGATTACCC 59.538 41.667 0.00 0.00 35.38 3.69
1436 1723 5.643379 ACACATCAACAACCATGATTACC 57.357 39.130 0.00 0.00 35.38 2.85
1437 1724 7.754924 CCTAAACACATCAACAACCATGATTAC 59.245 37.037 0.00 0.00 35.38 1.89
1438 1725 7.093988 CCCTAAACACATCAACAACCATGATTA 60.094 37.037 0.00 0.00 35.38 1.75
1439 1726 6.295236 CCCTAAACACATCAACAACCATGATT 60.295 38.462 0.00 0.00 35.38 2.57
1440 1727 5.185635 CCCTAAACACATCAACAACCATGAT 59.814 40.000 0.00 0.00 38.02 2.45
1441 1728 4.522405 CCCTAAACACATCAACAACCATGA 59.478 41.667 0.00 0.00 0.00 3.07
1442 1729 4.321899 CCCCTAAACACATCAACAACCATG 60.322 45.833 0.00 0.00 0.00 3.66
1443 1730 3.831911 CCCCTAAACACATCAACAACCAT 59.168 43.478 0.00 0.00 0.00 3.55
1444 1731 3.226777 CCCCTAAACACATCAACAACCA 58.773 45.455 0.00 0.00 0.00 3.67
1445 1732 2.560981 CCCCCTAAACACATCAACAACC 59.439 50.000 0.00 0.00 0.00 3.77
1446 1733 3.005367 CACCCCCTAAACACATCAACAAC 59.995 47.826 0.00 0.00 0.00 3.32
1447 1734 3.226777 CACCCCCTAAACACATCAACAA 58.773 45.455 0.00 0.00 0.00 2.83
1448 1735 2.175931 ACACCCCCTAAACACATCAACA 59.824 45.455 0.00 0.00 0.00 3.33
1449 1736 2.871453 ACACCCCCTAAACACATCAAC 58.129 47.619 0.00 0.00 0.00 3.18
1450 1737 3.244981 GGTACACCCCCTAAACACATCAA 60.245 47.826 0.00 0.00 0.00 2.57
1451 1738 2.306512 GGTACACCCCCTAAACACATCA 59.693 50.000 0.00 0.00 0.00 3.07
1452 1739 2.678769 CGGTACACCCCCTAAACACATC 60.679 54.545 0.00 0.00 0.00 3.06
1453 1740 1.279846 CGGTACACCCCCTAAACACAT 59.720 52.381 0.00 0.00 0.00 3.21
1454 1741 0.686224 CGGTACACCCCCTAAACACA 59.314 55.000 0.00 0.00 0.00 3.72
1455 1742 0.975887 TCGGTACACCCCCTAAACAC 59.024 55.000 0.00 0.00 0.00 3.32
1456 1743 1.624813 CTTCGGTACACCCCCTAAACA 59.375 52.381 0.00 0.00 0.00 2.83
1457 1744 1.901833 TCTTCGGTACACCCCCTAAAC 59.098 52.381 0.00 0.00 0.00 2.01
1458 1745 2.181975 CTCTTCGGTACACCCCCTAAA 58.818 52.381 0.00 0.00 0.00 1.85
1459 1746 1.358787 TCTCTTCGGTACACCCCCTAA 59.641 52.381 0.00 0.00 0.00 2.69
1460 1747 1.002069 TCTCTTCGGTACACCCCCTA 58.998 55.000 0.00 0.00 0.00 3.53
1461 1748 0.115745 TTCTCTTCGGTACACCCCCT 59.884 55.000 0.00 0.00 0.00 4.79
1462 1749 0.978907 TTTCTCTTCGGTACACCCCC 59.021 55.000 0.00 0.00 0.00 5.40
1463 1750 1.622312 ACTTTCTCTTCGGTACACCCC 59.378 52.381 0.00 0.00 0.00 4.95
1464 1751 2.036862 ACACTTTCTCTTCGGTACACCC 59.963 50.000 0.00 0.00 0.00 4.61
1465 1752 3.382048 ACACTTTCTCTTCGGTACACC 57.618 47.619 0.00 0.00 0.00 4.16
1466 1753 6.833342 TTTAACACTTTCTCTTCGGTACAC 57.167 37.500 0.00 0.00 0.00 2.90
1467 1754 9.715121 ATATTTTAACACTTTCTCTTCGGTACA 57.285 29.630 0.00 0.00 0.00 2.90
1470 1757 9.893305 CAAATATTTTAACACTTTCTCTTCGGT 57.107 29.630 0.00 0.00 0.00 4.69
1522 1809 8.947115 CAACTAACTCGATTAAAAGGGATCTTT 58.053 33.333 0.00 0.00 44.40 2.52
1523 1810 7.065923 GCAACTAACTCGATTAAAAGGGATCTT 59.934 37.037 0.00 0.00 34.07 2.40
1524 1811 6.539103 GCAACTAACTCGATTAAAAGGGATCT 59.461 38.462 0.00 0.00 0.00 2.75
1525 1812 6.238402 GGCAACTAACTCGATTAAAAGGGATC 60.238 42.308 0.00 0.00 0.00 3.36
1526 1813 5.589050 GGCAACTAACTCGATTAAAAGGGAT 59.411 40.000 0.00 0.00 0.00 3.85
1527 1814 4.939439 GGCAACTAACTCGATTAAAAGGGA 59.061 41.667 0.00 0.00 0.00 4.20
1528 1815 4.698304 TGGCAACTAACTCGATTAAAAGGG 59.302 41.667 0.00 0.00 37.61 3.95
1529 1816 5.642063 TCTGGCAACTAACTCGATTAAAAGG 59.358 40.000 0.00 0.00 37.61 3.11
1530 1817 6.721571 TCTGGCAACTAACTCGATTAAAAG 57.278 37.500 0.00 0.00 37.61 2.27
1538 1825 3.186613 GGAACTTTCTGGCAACTAACTCG 59.813 47.826 0.00 0.00 37.61 4.18
1551 1838 8.581253 AATAATTTCGAATCCAGGAACTTTCT 57.419 30.769 0.00 0.00 34.60 2.52
1552 1839 7.915923 GGAATAATTTCGAATCCAGGAACTTTC 59.084 37.037 9.39 0.00 30.72 2.62
1558 1845 5.827797 CCTTGGAATAATTTCGAATCCAGGA 59.172 40.000 21.83 8.16 40.96 3.86
1567 1854 6.098679 TGATTGTTGCCTTGGAATAATTTCG 58.901 36.000 0.00 0.00 32.28 3.46
1569 1856 9.956640 TTTATGATTGTTGCCTTGGAATAATTT 57.043 25.926 0.00 0.00 26.93 1.82
1577 1864 4.936411 TGCAATTTATGATTGTTGCCTTGG 59.064 37.500 6.49 0.00 44.64 3.61
1579 1866 6.174760 ACATGCAATTTATGATTGTTGCCTT 58.825 32.000 6.49 0.00 44.64 4.35
1636 1923 7.432148 AAAAGGACTTAAATCCCTTGTTTGT 57.568 32.000 0.00 0.00 39.97 2.83
1806 2104 2.747855 CTTTCAGCACGGGGAGGC 60.748 66.667 0.00 0.00 0.00 4.70
1808 2106 2.747855 GGCTTTCAGCACGGGGAG 60.748 66.667 0.00 0.00 44.75 4.30
2029 2327 0.249489 CGGCTGCTATGACCTGTACC 60.249 60.000 0.00 0.00 0.00 3.34
2105 2403 3.128415 CCAACCACAAATATGACGATGCA 59.872 43.478 0.00 0.00 0.00 3.96
2209 2507 6.440647 TCTTGTGCCTAGAGAGAAAATCCTTA 59.559 38.462 0.00 0.00 0.00 2.69
2246 2544 1.598130 GGCTCGTGGCAGAGTTGTT 60.598 57.895 6.12 0.00 44.01 2.83
2248 2546 2.743928 GGGCTCGTGGCAGAGTTG 60.744 66.667 13.29 0.68 44.01 3.16
2274 2572 1.480212 AACATCCACCCTCTCGTGCA 61.480 55.000 0.00 0.00 32.10 4.57
2275 2573 0.321653 AAACATCCACCCTCTCGTGC 60.322 55.000 0.00 0.00 32.10 5.34
2276 2574 1.806542 CAAAACATCCACCCTCTCGTG 59.193 52.381 0.00 0.00 0.00 4.35
2277 2575 1.271379 CCAAAACATCCACCCTCTCGT 60.271 52.381 0.00 0.00 0.00 4.18
2279 2577 2.437413 GTCCAAAACATCCACCCTCTC 58.563 52.381 0.00 0.00 0.00 3.20
2303 2601 2.598099 TACCAGGTGCGTCGGTGA 60.598 61.111 0.76 0.00 34.12 4.02
2310 2608 1.005037 TGCAGTTCTACCAGGTGCG 60.005 57.895 0.76 0.00 36.92 5.34
2316 2614 3.515502 AGCTATCAACTGCAGTTCTACCA 59.484 43.478 28.97 11.09 35.83 3.25
2317 2615 4.130286 AGCTATCAACTGCAGTTCTACC 57.870 45.455 28.97 15.62 35.83 3.18
2329 2627 4.994852 TCCAACAGTGTGTAAGCTATCAAC 59.005 41.667 0.00 0.00 0.00 3.18
2419 2717 3.713764 CCACCCTGAACATATCTTCTCCT 59.286 47.826 0.00 0.00 0.00 3.69
2458 2756 4.798907 GTGTACAAGAGGTCGTACATCATG 59.201 45.833 0.00 3.81 46.93 3.07
2525 2823 3.844090 GGCCGGCAGAGAGAGGAC 61.844 72.222 30.85 1.84 0.00 3.85
2632 2930 1.098050 CCCAGCAGAACAATGTAGCC 58.902 55.000 0.00 0.00 0.00 3.93
2739 3038 1.644786 GATGGAAACGGGCAAGACGG 61.645 60.000 0.00 0.00 35.23 4.79
2756 3055 5.032846 TGACAATCCCTCCTAGAAAGTGAT 58.967 41.667 0.00 0.00 0.00 3.06
2764 3063 1.137086 CCACGTGACAATCCCTCCTAG 59.863 57.143 19.30 0.00 0.00 3.02
2789 3088 5.221641 TGGCCTGGTAGTATTAATACTGCAG 60.222 44.000 31.82 26.36 44.52 4.41
2801 3100 1.594833 CGCTTGTGGCCTGGTAGTA 59.405 57.895 3.32 0.00 37.74 1.82
2808 3107 2.040544 CGAAATCCGCTTGTGGCCT 61.041 57.895 3.32 0.00 37.74 5.19
2817 3116 1.264288 GATCCCAACATCGAAATCCGC 59.736 52.381 0.00 0.00 38.37 5.54
2825 3124 0.538057 CCCCATGGATCCCAACATCG 60.538 60.000 15.22 0.00 36.95 3.84
2946 3245 2.765807 AGGCGGATGGACCAGGAG 60.766 66.667 0.00 0.00 38.90 3.69
2966 3265 2.005451 CTGCCTGAATGAGTTCTTCCG 58.995 52.381 0.00 0.00 35.33 4.30
3019 3318 4.750098 TGAGTTCTTCACGTCAAATTCCTC 59.250 41.667 0.00 0.00 0.00 3.71
3033 3332 2.434359 CGGCCCCGTGAGTTCTTC 60.434 66.667 0.00 0.00 34.35 2.87
3055 3354 3.743521 CCTGATTGCATCGAATAAGGGA 58.256 45.455 0.00 0.00 32.01 4.20
3068 3367 1.030457 CTCATTGCTCCCCTGATTGC 58.970 55.000 0.00 0.00 0.00 3.56
3088 3387 1.000955 CTCCACAGTCCGTAACAGCTT 59.999 52.381 0.00 0.00 0.00 3.74
3096 3395 0.608640 GATCCAACTCCACAGTCCGT 59.391 55.000 0.00 0.00 29.93 4.69
3097 3396 0.898320 AGATCCAACTCCACAGTCCG 59.102 55.000 0.00 0.00 29.93 4.79
3101 3403 2.502947 TCATCCAGATCCAACTCCACAG 59.497 50.000 0.00 0.00 0.00 3.66
3192 3494 3.388308 GTCTACTCTACGACGCCTATGA 58.612 50.000 0.00 0.00 0.00 2.15
3193 3495 2.479656 GGTCTACTCTACGACGCCTATG 59.520 54.545 0.00 0.00 0.00 2.23
3194 3496 2.765122 GGTCTACTCTACGACGCCTAT 58.235 52.381 0.00 0.00 0.00 2.57
3215 3517 4.207891 TCAAGATCTGTAACCTTGGAGC 57.792 45.455 0.00 0.00 38.19 4.70
3348 3650 0.832135 GCTGATCCTCGGATGGGGTA 60.832 60.000 2.58 0.00 34.60 3.69
3386 3688 2.341875 CCATTCCATGCACGCACCA 61.342 57.895 0.00 0.00 0.00 4.17
3425 3727 9.295214 CTAGTGCTTTATTCATATCGGATACAG 57.705 37.037 0.00 0.00 0.00 2.74
3445 3747 2.468831 CTCGCATCCTTTCTCTAGTGC 58.531 52.381 0.00 0.00 0.00 4.40
3453 3755 1.431036 GGCAAGCTCGCATCCTTTC 59.569 57.895 0.00 0.00 0.00 2.62
3473 3775 0.322277 CCTCATGGTGAGCAGCTGTT 60.322 55.000 16.64 9.79 42.98 3.16
3503 3805 5.127031 TCGAGGATCATATGAAGTGTTGTCA 59.873 40.000 9.99 0.00 33.17 3.58
3524 3826 0.536724 CATCTCCACCCACACATCGA 59.463 55.000 0.00 0.00 0.00 3.59
3562 3864 1.974265 TGGAAATTCTCGTTGCACCA 58.026 45.000 0.00 0.00 0.00 4.17
3564 3866 2.253603 GCATGGAAATTCTCGTTGCAC 58.746 47.619 0.00 0.00 34.42 4.57
3636 3938 9.939424 ATAATAAGACCCTTTGAGTAGTAGAGT 57.061 33.333 0.00 0.00 0.00 3.24
3653 3955 5.677178 GCAGCGCTTGTGTTAATAATAAGAC 59.323 40.000 7.50 0.00 36.20 3.01
3757 4059 8.344446 ACGTATGCAAGACATATATGGTACTA 57.656 34.615 16.96 0.00 43.11 1.82
3758 4060 7.228314 ACGTATGCAAGACATATATGGTACT 57.772 36.000 16.96 9.89 43.11 2.73
3759 4061 7.813148 AGAACGTATGCAAGACATATATGGTAC 59.187 37.037 16.96 7.93 43.11 3.34
3781 4083 5.641209 AGATGAGCACAACATCAGTAAGAAC 59.359 40.000 0.00 0.00 44.29 3.01
3833 4135 2.034254 CAGAGACATAACATGCGCGAAG 60.034 50.000 12.10 0.00 0.00 3.79
4018 4320 4.448395 CCGCAAAAAGCAAGAATTCATTGA 59.552 37.500 16.82 0.00 46.13 2.57
4021 4323 2.738314 GCCGCAAAAAGCAAGAATTCAT 59.262 40.909 8.44 0.00 46.13 2.57
4024 4326 1.511850 GGCCGCAAAAAGCAAGAATT 58.488 45.000 0.00 0.00 46.13 2.17
4033 4335 1.202417 TCATTGAAACGGCCGCAAAAA 60.202 42.857 28.58 15.82 0.00 1.94
4038 4340 2.202479 GCTCATTGAAACGGCCGC 60.202 61.111 28.58 10.14 0.00 6.53
4039 4341 0.523968 CATGCTCATTGAAACGGCCG 60.524 55.000 26.86 26.86 0.00 6.13
4089 4393 7.012704 GCAATCAATCTCAAGCAGGTCTTATAA 59.987 37.037 0.00 0.00 32.74 0.98
4099 4403 5.187687 TGTGATAGCAATCAATCTCAAGCA 58.812 37.500 0.00 0.00 43.69 3.91
4216 4521 7.410174 TGTGTCCTTCCCAAACATATTATCTT 58.590 34.615 0.00 0.00 0.00 2.40
4421 4731 4.201608 GCAGACAAACAAACAACACACATG 60.202 41.667 0.00 0.00 0.00 3.21
4563 4875 1.371183 CCTCACCACCTCGCTGAAA 59.629 57.895 0.00 0.00 0.00 2.69
4591 4903 2.369532 GGTTGTTCTACACACCCCTGTA 59.630 50.000 0.00 0.00 31.48 2.74
4732 5051 1.576421 CGTTGCTCCAGCTGGTTTC 59.424 57.895 31.58 20.74 42.66 2.78
4795 5114 1.295792 GAAGTGGTCACAAAGTGCGA 58.704 50.000 3.82 0.00 32.98 5.10
4806 5125 1.787847 CGACGGCATTGAAGTGGTC 59.212 57.895 0.00 0.00 0.00 4.02
4883 5205 5.537188 GTCCATCAGATCAAGATGAGGTAC 58.463 45.833 22.53 13.85 44.34 3.34
4884 5206 4.279420 CGTCCATCAGATCAAGATGAGGTA 59.721 45.833 22.53 8.23 44.34 3.08
4889 5212 2.141517 GCCGTCCATCAGATCAAGATG 58.858 52.381 16.88 16.88 41.91 2.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.