Multiple sequence alignment - TraesCS5D01G471200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G471200 chr5D 100.000 5858 0 0 1 5858 512303805 512297948 0.000000e+00 10818.0
1 TraesCS5D01G471200 chr5D 89.209 139 12 3 2800 2937 5794786 5794922 2.810000e-38 171.0
2 TraesCS5D01G471200 chr5D 89.130 92 10 0 2846 2937 257502196 257502287 1.330000e-21 115.0
3 TraesCS5D01G471200 chr5D 92.857 70 3 2 1632 1699 559461758 559461689 3.740000e-17 100.0
4 TraesCS5D01G471200 chr5D 93.478 46 3 0 2799 2844 257502131 257502176 1.050000e-07 69.4
5 TraesCS5D01G471200 chr5B 96.412 1505 47 6 2986 4483 643301765 643300261 0.000000e+00 2473.0
6 TraesCS5D01G471200 chr5B 94.399 982 29 10 1695 2659 643303067 643302095 0.000000e+00 1485.0
7 TraesCS5D01G471200 chr5B 90.562 943 62 9 4541 5468 643300270 643299340 0.000000e+00 1223.0
8 TraesCS5D01G471200 chr5B 84.733 786 87 24 647 1421 643426430 643425667 0.000000e+00 756.0
9 TraesCS5D01G471200 chr5B 86.357 711 54 18 12 693 643306463 643305767 0.000000e+00 736.0
10 TraesCS5D01G471200 chr5B 87.737 579 38 21 685 1241 643304294 643303727 0.000000e+00 645.0
11 TraesCS5D01G471200 chr5B 91.589 321 16 4 2675 2986 643302112 643301794 3.240000e-117 433.0
12 TraesCS5D01G471200 chr5B 88.644 317 27 6 1326 1635 643303379 643303065 1.540000e-100 377.0
13 TraesCS5D01G471200 chr5B 85.621 153 10 8 5711 5858 643299198 643299053 3.660000e-32 150.0
14 TraesCS5D01G471200 chr5B 95.652 92 4 0 155 246 643437229 643437138 1.320000e-31 148.0
15 TraesCS5D01G471200 chr5B 91.667 72 1 3 1632 1702 370194769 370194702 1.740000e-15 95.3
16 TraesCS5D01G471200 chr5B 91.667 72 1 3 1632 1702 370239629 370239562 1.740000e-15 95.3
17 TraesCS5D01G471200 chr5B 79.085 153 13 7 2804 2937 601414173 601414325 2.910000e-13 87.9
18 TraesCS5D01G471200 chr5B 90.769 65 2 2 1634 1697 390710510 390710571 3.760000e-12 84.2
19 TraesCS5D01G471200 chr5A 95.573 1491 42 6 2986 4470 640679357 640677885 0.000000e+00 2366.0
20 TraesCS5D01G471200 chr5A 88.564 1504 95 42 166 1634 640682149 640680688 0.000000e+00 1753.0
21 TraesCS5D01G471200 chr5A 87.317 1364 87 25 4541 5858 640677878 640676555 0.000000e+00 1482.0
22 TraesCS5D01G471200 chr5A 84.084 999 82 29 1698 2630 640680678 640679691 0.000000e+00 893.0
23 TraesCS5D01G471200 chr5A 92.675 314 16 6 2675 2986 640679694 640679386 4.160000e-121 446.0
24 TraesCS5D01G471200 chr5A 81.633 147 18 7 2800 2937 455084569 455084715 4.800000e-21 113.0
25 TraesCS5D01G471200 chr2A 95.455 1320 47 6 2986 4302 447941107 447942416 0.000000e+00 2093.0
26 TraesCS5D01G471200 chr2A 83.573 347 49 6 3770 4110 14849763 14849419 9.470000e-83 318.0
27 TraesCS5D01G471200 chr1B 90.370 135 10 3 2804 2937 119126417 119126549 2.170000e-39 174.0
28 TraesCS5D01G471200 chr1B 91.667 72 1 4 1631 1697 142039651 142039722 1.740000e-15 95.3
29 TraesCS5D01G471200 chr6D 83.417 199 12 3 1695 1872 204629372 204629570 1.310000e-36 165.0
30 TraesCS5D01G471200 chr6D 83.417 199 12 3 1695 1872 441778180 441778378 1.310000e-36 165.0
31 TraesCS5D01G471200 chr6D 94.030 67 2 2 1634 1698 8551034 8551100 3.740000e-17 100.0
32 TraesCS5D01G471200 chr2D 83.417 199 12 3 1695 1872 167143739 167143937 1.310000e-36 165.0
33 TraesCS5D01G471200 chr2D 92.857 70 3 2 1634 1701 260976091 260976022 3.740000e-17 100.0
34 TraesCS5D01G471200 chr1D 83.417 199 12 3 1695 1872 56946714 56946912 1.310000e-36 165.0
35 TraesCS5D01G471200 chr1D 81.046 153 11 7 2803 2937 418199431 418199583 8.030000e-19 106.0
36 TraesCS5D01G471200 chr1D 89.024 82 8 1 2803 2884 301236565 301236645 3.740000e-17 100.0
37 TraesCS5D01G471200 chr1D 92.857 70 2 3 1631 1697 176390188 176390119 1.340000e-16 99.0
38 TraesCS5D01G471200 chrUn 82.915 199 13 3 1695 1872 106337895 106338093 6.080000e-35 159.0
39 TraesCS5D01G471200 chrUn 81.407 199 16 3 1695 1872 105816641 105816839 6.120000e-30 143.0
40 TraesCS5D01G471200 chrUn 89.796 49 1 4 2768 2812 37901529 37901481 6.340000e-05 60.2
41 TraesCS5D01G471200 chr7D 83.163 196 12 3 1698 1872 190386107 190385912 6.080000e-35 159.0
42 TraesCS5D01G471200 chr7D 82.653 196 13 3 1698 1872 250465397 250465202 2.830000e-33 154.0
43 TraesCS5D01G471200 chr7D 86.207 145 9 5 2801 2935 602904864 602905007 4.730000e-31 147.0
44 TraesCS5D01G471200 chr7D 84.615 143 13 3 2804 2937 188579141 188579283 3.680000e-27 134.0
45 TraesCS5D01G471200 chr7B 85.816 141 8 6 2805 2935 683516274 683516412 7.920000e-29 139.0
46 TraesCS5D01G471200 chr7B 92.754 69 2 3 1634 1702 53250638 53250573 4.830000e-16 97.1
47 TraesCS5D01G471200 chr3A 82.667 150 13 4 2801 2937 423678355 423678206 2.870000e-23 121.0
48 TraesCS5D01G471200 chr3A 81.761 159 9 9 2798 2937 593355874 593355717 1.330000e-21 115.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G471200 chr5D 512297948 512303805 5857 True 10818.00 10818 100.000000 1 5858 1 chr5D.!!$R1 5857
1 TraesCS5D01G471200 chr5B 643299053 643306463 7410 True 940.25 2473 90.165125 12 5858 8 chr5B.!!$R5 5846
2 TraesCS5D01G471200 chr5B 643425667 643426430 763 True 756.00 756 84.733000 647 1421 1 chr5B.!!$R3 774
3 TraesCS5D01G471200 chr5A 640676555 640682149 5594 True 1388.00 2366 89.642600 166 5858 5 chr5A.!!$R1 5692
4 TraesCS5D01G471200 chr2A 447941107 447942416 1309 False 2093.00 2093 95.455000 2986 4302 1 chr2A.!!$F1 1316

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
399 404 0.036388 TTTCCCCAGCTACTCTTGCG 60.036 55.000 0.00 0.0 35.28 4.85 F
974 2499 0.179111 TCTCGCCTGCTTTACCATCG 60.179 55.000 0.00 0.0 0.00 3.84 F
1649 3464 0.042131 TTGTACTCCCTCCGTCCCAT 59.958 55.000 0.00 0.0 0.00 4.00 F
1653 3468 0.264955 ACTCCCTCCGTCCCATATGT 59.735 55.000 1.24 0.0 0.00 2.29 F
2833 4737 1.227176 GGCGGTAAGGCGACCTAAG 60.227 63.158 9.52 0.0 37.34 2.18 F
3357 5292 0.166814 GATGAGCCACACGAAAGCAC 59.833 55.000 0.00 0.0 0.00 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1392 3202 0.034089 ATCACAAACCCTAGCCTGCC 60.034 55.000 0.00 0.00 0.00 4.85 R
2828 4732 0.811616 GTCATGGTGCTCGCCTTAGG 60.812 60.000 0.00 0.00 0.00 2.69 R
2830 4734 1.153647 CGTCATGGTGCTCGCCTTA 60.154 57.895 0.86 0.00 0.00 2.69 R
2836 4740 1.884926 GCTAGGCGTCATGGTGCTC 60.885 63.158 9.44 1.66 0.00 4.26 R
4525 6470 0.108963 TTACACTTGGGACCAACGGG 59.891 55.000 0.00 0.92 41.29 5.28 R
4963 6920 1.079681 CGGTTACCGCTTAGTGCCA 60.080 57.895 11.93 0.00 41.17 4.92 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 8.503196 CAAAATTACAAATGCCTTTTTCCCTAC 58.497 33.333 0.00 0.00 0.00 3.18
30 31 4.600692 ACAAATGCCTTTTTCCCTACAC 57.399 40.909 0.00 0.00 0.00 2.90
35 36 3.078837 TGCCTTTTTCCCTACACGATTC 58.921 45.455 0.00 0.00 0.00 2.52
47 48 2.997980 ACACGATTCAATGGGCATGTA 58.002 42.857 0.00 0.00 0.00 2.29
48 49 3.554934 ACACGATTCAATGGGCATGTAT 58.445 40.909 0.00 0.00 0.00 2.29
49 50 3.316029 ACACGATTCAATGGGCATGTATG 59.684 43.478 0.00 0.00 0.00 2.39
50 51 3.316029 CACGATTCAATGGGCATGTATGT 59.684 43.478 0.00 0.00 0.00 2.29
58 59 1.221414 GGGCATGTATGTTCTCTCGC 58.779 55.000 0.00 0.00 0.00 5.03
59 60 1.473257 GGGCATGTATGTTCTCTCGCA 60.473 52.381 0.00 0.00 0.00 5.10
91 92 5.809001 TGCAGGATGATAAGAAGTTGAAGT 58.191 37.500 0.00 0.00 39.69 3.01
95 96 7.326454 CAGGATGATAAGAAGTTGAAGTGAGA 58.674 38.462 0.00 0.00 39.69 3.27
101 102 8.292448 TGATAAGAAGTTGAAGTGAGAAAATGC 58.708 33.333 0.00 0.00 0.00 3.56
102 103 5.100751 AGAAGTTGAAGTGAGAAAATGCG 57.899 39.130 0.00 0.00 0.00 4.73
104 105 4.214980 AGTTGAAGTGAGAAAATGCGTG 57.785 40.909 0.00 0.00 0.00 5.34
110 111 5.968848 TGAAGTGAGAAAATGCGTGTAAAAC 59.031 36.000 0.00 0.00 0.00 2.43
128 129 1.821759 CGGTGCCAGACAAACCACA 60.822 57.895 0.00 0.00 33.30 4.17
129 130 1.733526 GGTGCCAGACAAACCACAC 59.266 57.895 0.00 0.00 33.94 3.82
130 131 1.733526 GTGCCAGACAAACCACACC 59.266 57.895 0.00 0.00 0.00 4.16
131 132 0.751643 GTGCCAGACAAACCACACCT 60.752 55.000 0.00 0.00 0.00 4.00
132 133 0.751277 TGCCAGACAAACCACACCTG 60.751 55.000 0.00 0.00 0.00 4.00
133 134 2.032981 CCAGACAAACCACACCTGC 58.967 57.895 0.00 0.00 0.00 4.85
134 135 0.466189 CCAGACAAACCACACCTGCT 60.466 55.000 0.00 0.00 0.00 4.24
135 136 1.202758 CCAGACAAACCACACCTGCTA 60.203 52.381 0.00 0.00 0.00 3.49
136 137 2.571212 CAGACAAACCACACCTGCTAA 58.429 47.619 0.00 0.00 0.00 3.09
137 138 3.149196 CAGACAAACCACACCTGCTAAT 58.851 45.455 0.00 0.00 0.00 1.73
138 139 3.569701 CAGACAAACCACACCTGCTAATT 59.430 43.478 0.00 0.00 0.00 1.40
139 140 4.759693 CAGACAAACCACACCTGCTAATTA 59.240 41.667 0.00 0.00 0.00 1.40
161 162 1.260544 GGAGAAGCAGCAAAATGGGT 58.739 50.000 0.00 0.00 0.00 4.51
162 163 1.203287 GGAGAAGCAGCAAAATGGGTC 59.797 52.381 0.00 0.00 0.00 4.46
163 164 2.165998 GAGAAGCAGCAAAATGGGTCT 58.834 47.619 0.00 0.00 0.00 3.85
164 165 3.347216 GAGAAGCAGCAAAATGGGTCTA 58.653 45.455 0.00 0.00 0.00 2.59
298 299 1.512926 GCACAGTCGGTCAGAAATGT 58.487 50.000 0.00 0.00 32.99 2.71
325 329 2.559381 ACTACAGGAATCCTCTGCCT 57.441 50.000 0.00 0.00 35.78 4.75
354 358 2.304180 ACAGTTTCTGCAGAGTGCCTAT 59.696 45.455 17.43 0.00 44.23 2.57
397 402 2.859165 TGTTTCCCCAGCTACTCTTG 57.141 50.000 0.00 0.00 0.00 3.02
399 404 0.036388 TTTCCCCAGCTACTCTTGCG 60.036 55.000 0.00 0.00 35.28 4.85
407 412 1.825474 AGCTACTCTTGCGGCTAGAAA 59.175 47.619 14.68 5.92 32.94 2.52
420 425 4.375105 GCGGCTAGAAATAATTCGAGAACG 60.375 45.833 4.97 8.65 39.76 3.95
523 541 1.108132 GGTAGGCCTCGTCCTCGAAT 61.108 60.000 9.68 0.00 45.61 3.34
544 562 3.457625 CTCGAGGCAGATGGGGCAG 62.458 68.421 3.91 0.00 35.46 4.85
677 706 1.446618 GGCATCGCCCAAGCAAAAG 60.447 57.895 0.00 0.00 44.06 2.27
785 2299 2.124695 GACCCAACCAGATCGGGC 60.125 66.667 12.27 0.00 44.49 6.13
810 2324 4.359706 CGGTTAATTAAATCTTGCAGGGC 58.640 43.478 0.00 0.00 0.00 5.19
812 2326 4.442893 GGTTAATTAAATCTTGCAGGGCCC 60.443 45.833 16.46 16.46 0.00 5.80
824 2338 0.250338 CAGGGCCCTTACGCTAATCC 60.250 60.000 26.10 0.00 0.00 3.01
827 2341 0.534427 GGCCCTTACGCTAATCCCAC 60.534 60.000 0.00 0.00 0.00 4.61
850 2365 1.069823 CTAATCACCCATCTCGCAGCT 59.930 52.381 0.00 0.00 0.00 4.24
957 2482 3.133721 GCTCTCTCTCTCTGTCTCTCTCT 59.866 52.174 0.00 0.00 0.00 3.10
958 2483 4.739137 GCTCTCTCTCTCTGTCTCTCTCTC 60.739 54.167 0.00 0.00 0.00 3.20
959 2484 3.381590 TCTCTCTCTCTGTCTCTCTCTCG 59.618 52.174 0.00 0.00 0.00 4.04
960 2485 2.159099 TCTCTCTCTGTCTCTCTCTCGC 60.159 54.545 0.00 0.00 0.00 5.03
961 2486 1.134521 TCTCTCTGTCTCTCTCTCGCC 60.135 57.143 0.00 0.00 0.00 5.54
962 2487 0.908910 TCTCTGTCTCTCTCTCGCCT 59.091 55.000 0.00 0.00 0.00 5.52
974 2499 0.179111 TCTCGCCTGCTTTACCATCG 60.179 55.000 0.00 0.00 0.00 3.84
986 2511 4.114997 CCATCGGGTTGTTGCGGC 62.115 66.667 0.00 0.00 0.00 6.53
987 2512 4.459331 CATCGGGTTGTTGCGGCG 62.459 66.667 0.51 0.51 0.00 6.46
1353 3162 1.508808 TTTTAGGCGGGTTCGTGTGC 61.509 55.000 0.00 0.00 38.89 4.57
1392 3202 0.457853 TCGGAATCGCGAGGAAGTTG 60.458 55.000 16.66 0.31 36.13 3.16
1423 3233 4.840115 AGGGTTTGTGATTGGTGATTTCAT 59.160 37.500 0.00 0.00 0.00 2.57
1439 3249 7.142680 GTGATTTCATTTTCGTGAGGGTTTAA 58.857 34.615 0.00 0.00 0.00 1.52
1440 3250 7.114388 GTGATTTCATTTTCGTGAGGGTTTAAC 59.886 37.037 0.00 0.00 0.00 2.01
1442 3252 5.682943 TCATTTTCGTGAGGGTTTAACTG 57.317 39.130 0.00 0.00 0.00 3.16
1443 3253 3.974871 TTTTCGTGAGGGTTTAACTGC 57.025 42.857 0.00 0.00 0.00 4.40
1444 3254 2.922740 TTCGTGAGGGTTTAACTGCT 57.077 45.000 0.00 0.00 0.00 4.24
1445 3255 2.163818 TCGTGAGGGTTTAACTGCTG 57.836 50.000 0.00 0.00 0.00 4.41
1446 3256 1.414919 TCGTGAGGGTTTAACTGCTGT 59.585 47.619 0.00 0.00 0.00 4.40
1484 3299 1.967319 AGGTGGTACTGCTTGTGTTG 58.033 50.000 0.00 0.00 0.00 3.33
1513 3328 1.148310 CGACATCGCTTCAACAACCT 58.852 50.000 0.00 0.00 0.00 3.50
1547 3362 8.997621 TGGTGTTACATTTCAGACTAACTATC 57.002 34.615 0.00 0.00 0.00 2.08
1548 3363 8.590204 TGGTGTTACATTTCAGACTAACTATCA 58.410 33.333 0.00 0.00 0.00 2.15
1574 3389 2.755952 AAGTCCTTCCTTTTGCCTGT 57.244 45.000 0.00 0.00 0.00 4.00
1575 3390 1.986882 AGTCCTTCCTTTTGCCTGTG 58.013 50.000 0.00 0.00 0.00 3.66
1598 3413 7.095229 TGTGTTGTTGTATGCTTCTATGAAGAC 60.095 37.037 11.03 2.02 0.00 3.01
1613 3428 4.777140 TGAAGACGCAAATGTATCATCG 57.223 40.909 0.00 0.00 0.00 3.84
1634 3449 4.022155 TCGTAATGTAGGTGCTGTGTTGTA 60.022 41.667 0.00 0.00 0.00 2.41
1635 3450 4.090930 CGTAATGTAGGTGCTGTGTTGTAC 59.909 45.833 0.00 0.00 0.00 2.90
1637 3452 3.380479 TGTAGGTGCTGTGTTGTACTC 57.620 47.619 0.00 0.00 0.00 2.59
1639 3454 0.396811 AGGTGCTGTGTTGTACTCCC 59.603 55.000 0.00 0.00 0.00 4.30
1640 3455 0.396811 GGTGCTGTGTTGTACTCCCT 59.603 55.000 0.00 0.00 0.00 4.20
1641 3456 1.608283 GGTGCTGTGTTGTACTCCCTC 60.608 57.143 0.00 0.00 0.00 4.30
1642 3457 0.685097 TGCTGTGTTGTACTCCCTCC 59.315 55.000 0.00 0.00 0.00 4.30
1643 3458 0.389948 GCTGTGTTGTACTCCCTCCG 60.390 60.000 0.00 0.00 0.00 4.63
1644 3459 0.966920 CTGTGTTGTACTCCCTCCGT 59.033 55.000 0.00 0.00 0.00 4.69
1645 3460 0.963962 TGTGTTGTACTCCCTCCGTC 59.036 55.000 0.00 0.00 0.00 4.79
1646 3461 0.245813 GTGTTGTACTCCCTCCGTCC 59.754 60.000 0.00 0.00 0.00 4.79
1647 3462 0.901580 TGTTGTACTCCCTCCGTCCC 60.902 60.000 0.00 0.00 0.00 4.46
1648 3463 0.901580 GTTGTACTCCCTCCGTCCCA 60.902 60.000 0.00 0.00 0.00 4.37
1649 3464 0.042131 TTGTACTCCCTCCGTCCCAT 59.958 55.000 0.00 0.00 0.00 4.00
1650 3465 0.928505 TGTACTCCCTCCGTCCCATA 59.071 55.000 0.00 0.00 0.00 2.74
1651 3466 1.502039 TGTACTCCCTCCGTCCCATAT 59.498 52.381 0.00 0.00 0.00 1.78
1652 3467 1.893801 GTACTCCCTCCGTCCCATATG 59.106 57.143 0.00 0.00 0.00 1.78
1653 3468 0.264955 ACTCCCTCCGTCCCATATGT 59.735 55.000 1.24 0.00 0.00 2.29
1654 3469 1.502039 ACTCCCTCCGTCCCATATGTA 59.498 52.381 1.24 0.00 0.00 2.29
1655 3470 2.090943 ACTCCCTCCGTCCCATATGTAA 60.091 50.000 1.24 0.00 0.00 2.41
1656 3471 2.563179 CTCCCTCCGTCCCATATGTAAG 59.437 54.545 1.24 0.00 0.00 2.34
1657 3472 2.178325 TCCCTCCGTCCCATATGTAAGA 59.822 50.000 1.24 0.00 0.00 2.10
1658 3473 2.563179 CCCTCCGTCCCATATGTAAGAG 59.437 54.545 1.24 0.98 0.00 2.85
1659 3474 3.231818 CCTCCGTCCCATATGTAAGAGT 58.768 50.000 1.24 0.00 0.00 3.24
1660 3475 3.005897 CCTCCGTCCCATATGTAAGAGTG 59.994 52.174 1.24 0.00 0.00 3.51
1661 3476 3.637229 CTCCGTCCCATATGTAAGAGTGT 59.363 47.826 1.24 0.00 0.00 3.55
1662 3477 3.635373 TCCGTCCCATATGTAAGAGTGTC 59.365 47.826 1.24 0.00 0.00 3.67
1663 3478 3.383505 CCGTCCCATATGTAAGAGTGTCA 59.616 47.826 1.24 0.00 0.00 3.58
1664 3479 4.142026 CCGTCCCATATGTAAGAGTGTCAA 60.142 45.833 1.24 0.00 0.00 3.18
1665 3480 5.416083 CGTCCCATATGTAAGAGTGTCAAA 58.584 41.667 1.24 0.00 0.00 2.69
1666 3481 5.872617 CGTCCCATATGTAAGAGTGTCAAAA 59.127 40.000 1.24 0.00 0.00 2.44
1667 3482 6.370442 CGTCCCATATGTAAGAGTGTCAAAAA 59.630 38.462 1.24 0.00 0.00 1.94
1829 3672 6.747280 GGAAGAAAATGTAATCACGGTGAATG 59.253 38.462 15.72 0.00 0.00 2.67
1852 3695 9.464714 AATGAATTATGTACACTAGTTAGAGCG 57.535 33.333 0.00 0.00 0.00 5.03
2024 3897 4.520492 AGAAACTGTAATGGTTTGCAGGAG 59.480 41.667 8.34 0.00 46.33 3.69
2331 4207 2.571212 TGCCTTCTTCATTTGTCGTGT 58.429 42.857 0.00 0.00 0.00 4.49
2335 4211 3.745975 CCTTCTTCATTTGTCGTGTGCTA 59.254 43.478 0.00 0.00 0.00 3.49
2394 4270 2.104451 TCCTTGCCGGTGTTACTTGTTA 59.896 45.455 1.90 0.00 0.00 2.41
2449 4325 8.303876 TCAAACTTTTAGTGTTTTCTTGAAGCT 58.696 29.630 0.00 0.00 35.71 3.74
2453 4329 8.470002 ACTTTTAGTGTTTTCTTGAAGCTGAAT 58.530 29.630 0.00 0.00 0.00 2.57
2462 4338 9.468532 GTTTTCTTGAAGCTGAATGAATTAACT 57.531 29.630 0.00 0.00 0.00 2.24
2504 4398 5.294306 GTGACAGAACTGAAACAGAACATCA 59.706 40.000 8.87 4.98 35.18 3.07
2625 4519 1.750778 CCCATGGCATTCTGGTTACAC 59.249 52.381 6.09 0.00 0.00 2.90
2626 4520 2.621407 CCCATGGCATTCTGGTTACACT 60.621 50.000 6.09 0.00 0.00 3.55
2659 4553 4.910458 ACTAGGTAAGCAATTGTCACCT 57.090 40.909 22.78 22.78 42.25 4.00
2660 4554 5.242795 ACTAGGTAAGCAATTGTCACCTT 57.757 39.130 23.75 14.20 40.14 3.50
2661 4555 5.631119 ACTAGGTAAGCAATTGTCACCTTT 58.369 37.500 23.75 13.83 40.14 3.11
2662 4556 5.705905 ACTAGGTAAGCAATTGTCACCTTTC 59.294 40.000 23.75 10.63 40.14 2.62
2663 4557 3.502211 AGGTAAGCAATTGTCACCTTTCG 59.498 43.478 17.09 0.00 36.16 3.46
2664 4558 2.422276 AAGCAATTGTCACCTTTCGC 57.578 45.000 7.40 0.00 0.00 4.70
2665 4559 1.317613 AGCAATTGTCACCTTTCGCA 58.682 45.000 7.40 0.00 0.00 5.10
2666 4560 1.680735 AGCAATTGTCACCTTTCGCAA 59.319 42.857 7.40 0.00 0.00 4.85
2667 4561 2.100584 AGCAATTGTCACCTTTCGCAAA 59.899 40.909 7.40 0.00 0.00 3.68
2668 4562 2.863137 GCAATTGTCACCTTTCGCAAAA 59.137 40.909 7.40 0.00 0.00 2.44
2669 4563 3.308323 GCAATTGTCACCTTTCGCAAAAA 59.692 39.130 7.40 0.00 0.00 1.94
2743 4637 6.370442 CGTTTTTATACACTGAGGAACATCCA 59.630 38.462 0.00 0.00 39.61 3.41
2746 4640 2.169832 ACACTGAGGAACATCCAACG 57.830 50.000 0.00 0.00 39.61 4.10
2809 4703 6.639686 GCATGCTAGTTTTCCATATCATTGTG 59.360 38.462 11.37 0.00 0.00 3.33
2832 4736 2.894919 GGCGGTAAGGCGACCTAA 59.105 61.111 9.52 0.00 37.34 2.69
2833 4737 1.227176 GGCGGTAAGGCGACCTAAG 60.227 63.158 9.52 0.00 37.34 2.18
2834 4738 1.227176 GCGGTAAGGCGACCTAAGG 60.227 63.158 9.52 0.00 37.34 2.69
2836 4740 1.227176 GGTAAGGCGACCTAAGGCG 60.227 63.158 4.54 0.00 39.33 5.52
2837 4741 1.669999 GGTAAGGCGACCTAAGGCGA 61.670 60.000 4.41 0.00 39.33 5.54
2838 4742 0.248949 GTAAGGCGACCTAAGGCGAG 60.249 60.000 4.41 0.00 39.33 5.03
2840 4744 4.143333 GGCGACCTAAGGCGAGCA 62.143 66.667 4.41 0.00 0.00 4.26
2841 4745 2.886124 GCGACCTAAGGCGAGCAC 60.886 66.667 4.41 0.00 0.00 4.40
2842 4746 2.202756 CGACCTAAGGCGAGCACC 60.203 66.667 0.00 0.00 0.00 5.01
2843 4747 2.978824 GACCTAAGGCGAGCACCA 59.021 61.111 0.00 0.00 0.00 4.17
2853 4757 1.589993 CGAGCACCATGACGCCTAG 60.590 63.158 0.00 0.00 0.00 3.02
2854 4758 1.884926 GAGCACCATGACGCCTAGC 60.885 63.158 0.00 0.00 0.00 3.42
3025 4960 3.857157 TGGTTATCCCATACTTGGCTC 57.143 47.619 0.00 0.00 42.15 4.70
3246 5181 4.072131 GTGAGGTCAAGGACTTGCATTTA 58.928 43.478 7.18 0.00 40.24 1.40
3357 5292 0.166814 GATGAGCCACACGAAAGCAC 59.833 55.000 0.00 0.00 0.00 4.40
3360 5295 1.270571 TGAGCCACACGAAAGCACATA 60.271 47.619 0.00 0.00 0.00 2.29
4442 6387 7.446001 TGTGTAGATTGCAAATGATAACACA 57.554 32.000 20.15 20.15 41.52 3.72
4463 6408 7.050377 ACACATGTTTCAGTAATCATCCTAGG 58.950 38.462 0.82 0.82 0.00 3.02
4466 6411 7.071196 ACATGTTTCAGTAATCATCCTAGGCTA 59.929 37.037 2.96 0.00 0.00 3.93
4470 6415 9.343539 GTTTCAGTAATCATCCTAGGCTAAATT 57.656 33.333 2.96 4.04 0.00 1.82
4472 6417 8.908786 TCAGTAATCATCCTAGGCTAAATTTG 57.091 34.615 2.96 0.00 0.00 2.32
4475 6420 8.494433 AGTAATCATCCTAGGCTAAATTTGTGA 58.506 33.333 2.96 0.00 0.00 3.58
4476 6421 9.120538 GTAATCATCCTAGGCTAAATTTGTGAA 57.879 33.333 2.96 0.00 0.00 3.18
4477 6422 8.593945 AATCATCCTAGGCTAAATTTGTGAAA 57.406 30.769 2.96 0.00 0.00 2.69
4478 6423 8.593945 ATCATCCTAGGCTAAATTTGTGAAAA 57.406 30.769 2.96 0.00 0.00 2.29
4480 6425 8.522830 TCATCCTAGGCTAAATTTGTGAAAAAG 58.477 33.333 2.96 0.00 0.00 2.27
4481 6426 7.227049 TCCTAGGCTAAATTTGTGAAAAAGG 57.773 36.000 2.96 0.00 0.00 3.11
4482 6427 7.007723 TCCTAGGCTAAATTTGTGAAAAAGGA 58.992 34.615 2.96 2.23 0.00 3.36
4483 6428 7.507616 TCCTAGGCTAAATTTGTGAAAAAGGAA 59.492 33.333 2.96 0.00 0.00 3.36
4484 6429 8.147704 CCTAGGCTAAATTTGTGAAAAAGGAAA 58.852 33.333 0.00 0.00 0.00 3.13
4485 6430 9.710900 CTAGGCTAAATTTGTGAAAAAGGAAAT 57.289 29.630 0.00 0.00 0.00 2.17
4486 6431 8.382030 AGGCTAAATTTGTGAAAAAGGAAATG 57.618 30.769 0.00 0.00 0.00 2.32
4487 6432 8.210265 AGGCTAAATTTGTGAAAAAGGAAATGA 58.790 29.630 0.00 0.00 0.00 2.57
4488 6433 9.002600 GGCTAAATTTGTGAAAAAGGAAATGAT 57.997 29.630 0.00 0.00 0.00 2.45
4496 6441 9.748708 TTGTGAAAAAGGAAATGATAAAGACTG 57.251 29.630 0.00 0.00 0.00 3.51
4497 6442 8.912988 TGTGAAAAAGGAAATGATAAAGACTGT 58.087 29.630 0.00 0.00 0.00 3.55
4498 6443 9.185192 GTGAAAAAGGAAATGATAAAGACTGTG 57.815 33.333 0.00 0.00 0.00 3.66
4499 6444 9.130661 TGAAAAAGGAAATGATAAAGACTGTGA 57.869 29.630 0.00 0.00 0.00 3.58
4500 6445 9.965824 GAAAAAGGAAATGATAAAGACTGTGAA 57.034 29.630 0.00 0.00 0.00 3.18
4503 6448 9.918630 AAAGGAAATGATAAAGACTGTGAATTG 57.081 29.630 0.00 0.00 0.00 2.32
4504 6449 8.868522 AGGAAATGATAAAGACTGTGAATTGA 57.131 30.769 0.00 0.00 0.00 2.57
4505 6450 9.300681 AGGAAATGATAAAGACTGTGAATTGAA 57.699 29.630 0.00 0.00 0.00 2.69
4506 6451 9.912634 GGAAATGATAAAGACTGTGAATTGAAA 57.087 29.630 0.00 0.00 0.00 2.69
4510 6455 8.908786 TGATAAAGACTGTGAATTGAAACTCT 57.091 30.769 0.00 0.00 0.00 3.24
4511 6456 8.993121 TGATAAAGACTGTGAATTGAAACTCTC 58.007 33.333 0.00 0.00 0.00 3.20
4512 6457 8.908786 ATAAAGACTGTGAATTGAAACTCTCA 57.091 30.769 0.00 0.00 0.00 3.27
4513 6458 6.610741 AAGACTGTGAATTGAAACTCTCAC 57.389 37.500 0.00 0.00 38.91 3.51
4514 6459 5.059833 AGACTGTGAATTGAAACTCTCACC 58.940 41.667 0.00 0.00 37.90 4.02
4515 6460 5.041191 ACTGTGAATTGAAACTCTCACCT 57.959 39.130 0.00 0.00 37.90 4.00
4516 6461 6.042093 AGACTGTGAATTGAAACTCTCACCTA 59.958 38.462 0.00 0.00 37.90 3.08
4517 6462 6.773638 ACTGTGAATTGAAACTCTCACCTAT 58.226 36.000 0.00 0.00 37.90 2.57
4518 6463 7.227156 ACTGTGAATTGAAACTCTCACCTATT 58.773 34.615 0.00 0.00 37.90 1.73
4519 6464 7.721399 ACTGTGAATTGAAACTCTCACCTATTT 59.279 33.333 0.00 0.00 37.90 1.40
4520 6465 8.099364 TGTGAATTGAAACTCTCACCTATTTC 57.901 34.615 0.00 0.00 37.90 2.17
4521 6466 7.939039 TGTGAATTGAAACTCTCACCTATTTCT 59.061 33.333 0.00 0.00 37.90 2.52
4522 6467 8.787852 GTGAATTGAAACTCTCACCTATTTCTT 58.212 33.333 0.00 0.00 33.57 2.52
4523 6468 8.786898 TGAATTGAAACTCTCACCTATTTCTTG 58.213 33.333 0.00 0.00 32.21 3.02
4524 6469 7.693969 ATTGAAACTCTCACCTATTTCTTGG 57.306 36.000 0.00 0.00 32.21 3.61
4525 6470 5.003804 TGAAACTCTCACCTATTTCTTGGC 58.996 41.667 0.00 0.00 33.21 4.52
4526 6471 3.636153 ACTCTCACCTATTTCTTGGCC 57.364 47.619 0.00 0.00 0.00 5.36
4527 6472 2.239907 ACTCTCACCTATTTCTTGGCCC 59.760 50.000 0.00 0.00 0.00 5.80
4528 6473 1.209504 TCTCACCTATTTCTTGGCCCG 59.790 52.381 0.00 0.00 0.00 6.13
4529 6474 0.988832 TCACCTATTTCTTGGCCCGT 59.011 50.000 0.00 0.00 0.00 5.28
4530 6475 1.353022 TCACCTATTTCTTGGCCCGTT 59.647 47.619 0.00 0.00 0.00 4.44
4531 6476 1.472480 CACCTATTTCTTGGCCCGTTG 59.528 52.381 0.00 0.00 0.00 4.10
4532 6477 1.102978 CCTATTTCTTGGCCCGTTGG 58.897 55.000 0.00 0.00 0.00 3.77
4533 6478 1.615919 CCTATTTCTTGGCCCGTTGGT 60.616 52.381 0.00 0.00 0.00 3.67
4534 6479 1.743394 CTATTTCTTGGCCCGTTGGTC 59.257 52.381 0.00 0.00 36.51 4.02
4535 6480 0.898326 ATTTCTTGGCCCGTTGGTCC 60.898 55.000 0.00 0.00 34.32 4.46
4536 6481 2.987355 TTTCTTGGCCCGTTGGTCCC 62.987 60.000 0.00 0.00 34.32 4.46
4537 6482 4.278513 CTTGGCCCGTTGGTCCCA 62.279 66.667 0.00 0.00 34.32 4.37
4538 6483 3.801068 CTTGGCCCGTTGGTCCCAA 62.801 63.158 0.00 0.00 34.32 4.12
4539 6484 3.801068 TTGGCCCGTTGGTCCCAAG 62.801 63.158 0.00 0.00 34.32 3.61
4621 6571 2.188817 AGACGATGCTTTTACCTCCCT 58.811 47.619 0.00 0.00 0.00 4.20
4624 6574 4.409247 AGACGATGCTTTTACCTCCCTTAT 59.591 41.667 0.00 0.00 0.00 1.73
4628 6578 6.183361 ACGATGCTTTTACCTCCCTTATATGT 60.183 38.462 0.00 0.00 0.00 2.29
4688 6638 9.149225 GTCATCAGCCTCTATATTTATCAAGTG 57.851 37.037 0.00 0.00 0.00 3.16
4691 6641 8.441311 TCAGCCTCTATATTTATCAAGTGGAT 57.559 34.615 0.00 0.00 40.14 3.41
4692 6642 8.316946 TCAGCCTCTATATTTATCAAGTGGATG 58.683 37.037 0.00 0.00 39.27 3.51
4698 6648 9.987272 TCTATATTTATCAAGTGGATGTCTGTG 57.013 33.333 0.00 0.00 36.72 3.66
4715 6665 3.117794 CTGTGTTGTGCAAGTGGAATTG 58.882 45.455 0.00 0.00 0.00 2.32
4744 6694 7.500892 AGTTGTGGTTATACTGTTGATGTTGAA 59.499 33.333 0.00 0.00 0.00 2.69
4746 6696 6.072728 TGTGGTTATACTGTTGATGTTGAAGC 60.073 38.462 0.00 0.00 0.00 3.86
4752 6702 2.414481 CTGTTGATGTTGAAGCTCTCCG 59.586 50.000 0.00 0.00 0.00 4.63
4776 6726 5.277250 GCTATTTGTCTCTGCAATCTACTGC 60.277 44.000 0.00 0.00 42.95 4.40
4827 6777 1.748122 GCGACGGTCTAGGACTCCA 60.748 63.158 6.57 0.00 32.47 3.86
4881 6831 1.445716 GAGCTGCTAGGCCTGCAATG 61.446 60.000 24.02 16.93 40.13 2.82
4960 6917 6.017400 AGATTTTAGTCTTAACCGTCGTCA 57.983 37.500 0.00 0.00 0.00 4.35
4963 6920 5.633830 TTTAGTCTTAACCGTCGTCATCT 57.366 39.130 0.00 0.00 0.00 2.90
4968 6925 0.108992 TAACCGTCGTCATCTGGCAC 60.109 55.000 0.00 0.00 0.00 5.01
5007 6964 1.334556 TGAACCGGGTATGTATCGTCG 59.665 52.381 6.32 0.00 0.00 5.12
5106 7076 3.994204 TGATGCAAATTGGATGGATCG 57.006 42.857 4.33 0.00 45.39 3.69
5122 7092 6.538742 GGATGGATCGATCTGTTTTGTCTTTA 59.461 38.462 23.96 0.00 0.00 1.85
5141 7111 8.783093 TGTCTTTATGAACTAACACATCCTTTG 58.217 33.333 0.00 0.00 0.00 2.77
5156 7126 3.838565 TCCTTTGTTAGATGGCCACAAA 58.161 40.909 8.16 13.07 37.93 2.83
5189 7162 2.236644 AGCACATCACATGAAGAGCTCT 59.763 45.455 11.45 11.45 0.00 4.09
5223 7196 1.950909 TGAATCAAAGCCGTCGGTTTT 59.049 42.857 19.12 19.12 37.60 2.43
5275 7248 0.038618 TTCAGTCATGCGCTACGTGT 60.039 50.000 9.73 0.00 36.60 4.49
5286 7259 0.109689 GCTACGTGTTCAGACTCGCT 60.110 55.000 0.00 0.00 44.23 4.93
5324 7297 1.329171 TGCCTTGCCAAGCAACACTT 61.329 50.000 0.00 0.00 43.99 3.16
5347 7320 7.824779 ACTTGGTAATCCTGAAGAATTACTCAC 59.175 37.037 0.33 0.00 32.00 3.51
5369 7342 0.107312 AGAAGCCTGGTAGCAGCATG 60.107 55.000 16.62 4.43 40.87 4.06
5372 7345 0.549950 AGCCTGGTAGCAGCATGAAT 59.450 50.000 16.62 0.00 39.69 2.57
5420 7393 6.734104 ATTCATCTTCAGAACTTCTTTCGG 57.266 37.500 0.00 0.00 39.47 4.30
5483 7467 3.188786 GGCACGTCTCACCGCATC 61.189 66.667 0.00 0.00 0.00 3.91
5484 7468 3.188786 GCACGTCTCACCGCATCC 61.189 66.667 0.00 0.00 0.00 3.51
5485 7469 2.261361 CACGTCTCACCGCATCCA 59.739 61.111 0.00 0.00 0.00 3.41
5486 7470 2.094659 CACGTCTCACCGCATCCAC 61.095 63.158 0.00 0.00 0.00 4.02
5487 7471 2.509336 CGTCTCACCGCATCCACC 60.509 66.667 0.00 0.00 0.00 4.61
5501 7485 1.978617 CCACCTCCACCACCAATGC 60.979 63.158 0.00 0.00 0.00 3.56
5517 7501 4.752879 GCTACCGTGCCGCCTTCA 62.753 66.667 0.00 0.00 0.00 3.02
5518 7502 2.509336 CTACCGTGCCGCCTTCAG 60.509 66.667 0.00 0.00 0.00 3.02
5519 7503 2.992689 TACCGTGCCGCCTTCAGA 60.993 61.111 0.00 0.00 0.00 3.27
5520 7504 2.501223 CTACCGTGCCGCCTTCAGAA 62.501 60.000 0.00 0.00 0.00 3.02
5521 7505 1.895020 TACCGTGCCGCCTTCAGAAT 61.895 55.000 0.00 0.00 0.00 2.40
5522 7506 2.040544 CCGTGCCGCCTTCAGAATT 61.041 57.895 0.00 0.00 0.00 2.17
5523 7507 1.586154 CCGTGCCGCCTTCAGAATTT 61.586 55.000 0.00 0.00 0.00 1.82
5524 7508 1.083489 CGTGCCGCCTTCAGAATTTA 58.917 50.000 0.00 0.00 0.00 1.40
5525 7509 1.202031 CGTGCCGCCTTCAGAATTTAC 60.202 52.381 0.00 0.00 0.00 2.01
5526 7510 2.084546 GTGCCGCCTTCAGAATTTACT 58.915 47.619 0.00 0.00 0.00 2.24
5527 7511 2.488153 GTGCCGCCTTCAGAATTTACTT 59.512 45.455 0.00 0.00 0.00 2.24
5528 7512 2.487762 TGCCGCCTTCAGAATTTACTTG 59.512 45.455 0.00 0.00 0.00 3.16
5620 7607 2.517959 CCATTGCATAATCGATGGGGT 58.482 47.619 0.00 0.00 42.02 4.95
5621 7608 3.684908 CCATTGCATAATCGATGGGGTA 58.315 45.455 0.00 0.00 42.02 3.69
5622 7609 4.078537 CCATTGCATAATCGATGGGGTAA 58.921 43.478 0.00 0.00 42.02 2.85
5634 7623 0.036765 TGGGGTAACATCGTGCACTC 60.037 55.000 16.19 0.00 39.74 3.51
5637 7626 1.204941 GGGTAACATCGTGCACTCTCT 59.795 52.381 16.19 0.00 39.74 3.10
5641 7630 5.109903 GGTAACATCGTGCACTCTCTAAAT 58.890 41.667 16.19 0.00 0.00 1.40
5651 7640 6.017933 GTGCACTCTCTAAATTGAATGAACG 58.982 40.000 10.32 0.00 0.00 3.95
5663 7652 5.568685 TTGAATGAACGAACAAGAAACCA 57.431 34.783 0.00 0.00 0.00 3.67
5684 7673 7.088589 ACCAAACATGTTTCAGATATACAGC 57.911 36.000 20.85 0.00 0.00 4.40
5749 7753 4.511246 AGGTGCGGCCATGGGATG 62.511 66.667 15.13 0.00 40.61 3.51
5781 7785 3.151710 CCATCGCCGGTCCACCTA 61.152 66.667 1.90 0.00 0.00 3.08
5786 7790 1.828660 CGCCGGTCCACCTATCTCT 60.829 63.158 1.90 0.00 0.00 3.10
5787 7791 1.797211 CGCCGGTCCACCTATCTCTC 61.797 65.000 1.90 0.00 0.00 3.20
5788 7792 0.468400 GCCGGTCCACCTATCTCTCT 60.468 60.000 1.90 0.00 0.00 3.10
5789 7793 1.611519 CCGGTCCACCTATCTCTCTC 58.388 60.000 0.00 0.00 0.00 3.20
5790 7794 1.144093 CCGGTCCACCTATCTCTCTCT 59.856 57.143 0.00 0.00 0.00 3.10
5791 7795 2.500229 CGGTCCACCTATCTCTCTCTC 58.500 57.143 0.00 0.00 0.00 3.20
5793 7797 2.175931 GGTCCACCTATCTCTCTCTCCA 59.824 54.545 0.00 0.00 0.00 3.86
5794 7798 3.373220 GGTCCACCTATCTCTCTCTCCAA 60.373 52.174 0.00 0.00 0.00 3.53
5795 7799 3.888930 GTCCACCTATCTCTCTCTCCAAG 59.111 52.174 0.00 0.00 0.00 3.61
5801 7805 4.141274 CCTATCTCTCTCTCCAAGGTCTCA 60.141 50.000 0.00 0.00 0.00 3.27
5838 7848 2.092914 ACATCTCGAGTCATTTTCCCCC 60.093 50.000 13.13 0.00 0.00 5.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 7.509141 AGGGAAAAAGGCATTTGTAATTTTG 57.491 32.000 0.00 0.00 0.00 2.44
3 4 8.214364 TGTAGGGAAAAAGGCATTTGTAATTTT 58.786 29.630 0.00 0.00 0.00 1.82
4 5 7.659799 GTGTAGGGAAAAAGGCATTTGTAATTT 59.340 33.333 0.00 0.00 0.00 1.82
6 7 6.571537 CGTGTAGGGAAAAAGGCATTTGTAAT 60.572 38.462 0.00 0.00 0.00 1.89
7 8 5.278561 CGTGTAGGGAAAAAGGCATTTGTAA 60.279 40.000 0.00 0.00 0.00 2.41
8 9 4.216687 CGTGTAGGGAAAAAGGCATTTGTA 59.783 41.667 0.00 0.00 0.00 2.41
9 10 3.005367 CGTGTAGGGAAAAAGGCATTTGT 59.995 43.478 0.00 0.00 0.00 2.83
10 11 3.254657 TCGTGTAGGGAAAAAGGCATTTG 59.745 43.478 0.00 0.00 0.00 2.32
11 12 3.492337 TCGTGTAGGGAAAAAGGCATTT 58.508 40.909 0.00 0.00 0.00 2.32
12 13 3.149005 TCGTGTAGGGAAAAAGGCATT 57.851 42.857 0.00 0.00 0.00 3.56
13 14 2.871096 TCGTGTAGGGAAAAAGGCAT 57.129 45.000 0.00 0.00 0.00 4.40
14 15 2.871096 ATCGTGTAGGGAAAAAGGCA 57.129 45.000 0.00 0.00 0.00 4.75
15 16 3.078837 TGAATCGTGTAGGGAAAAAGGC 58.921 45.455 0.00 0.00 0.00 4.35
16 17 5.393027 CCATTGAATCGTGTAGGGAAAAAGG 60.393 44.000 0.00 0.00 0.00 3.11
17 18 5.393027 CCCATTGAATCGTGTAGGGAAAAAG 60.393 44.000 0.00 0.00 36.96 2.27
18 19 4.461081 CCCATTGAATCGTGTAGGGAAAAA 59.539 41.667 0.00 0.00 36.96 1.94
21 22 2.682563 GCCCATTGAATCGTGTAGGGAA 60.683 50.000 0.00 0.00 36.96 3.97
28 29 3.316029 ACATACATGCCCATTGAATCGTG 59.684 43.478 0.00 0.00 0.00 4.35
30 31 4.276678 AGAACATACATGCCCATTGAATCG 59.723 41.667 0.00 0.00 0.00 3.34
35 36 3.249320 CGAGAGAACATACATGCCCATTG 59.751 47.826 0.00 0.00 0.00 2.82
47 48 2.772739 GCATGGTGCGAGAGAACAT 58.227 52.632 0.00 0.00 43.36 2.71
48 49 4.284123 GCATGGTGCGAGAGAACA 57.716 55.556 0.00 0.00 43.36 3.18
58 59 1.138036 CATCCTGCAACGCATGGTG 59.862 57.895 0.00 0.00 38.13 4.17
59 60 0.394762 ATCATCCTGCAACGCATGGT 60.395 50.000 0.00 0.00 38.13 3.55
72 73 8.553459 TTTCTCACTTCAACTTCTTATCATCC 57.447 34.615 0.00 0.00 0.00 3.51
102 103 1.301423 TGTCTGGCACCGTTTTACAC 58.699 50.000 0.00 0.00 0.00 2.90
104 105 2.542205 GGTTTGTCTGGCACCGTTTTAC 60.542 50.000 0.00 0.00 0.00 2.01
110 111 1.821759 TGTGGTTTGTCTGGCACCG 60.822 57.895 0.00 0.00 32.71 4.94
116 117 2.254546 TAGCAGGTGTGGTTTGTCTG 57.745 50.000 0.00 0.00 35.51 3.51
128 129 5.116084 TGCTTCTCCAATAATTAGCAGGT 57.884 39.130 0.00 0.00 34.05 4.00
131 132 4.525996 TGCTGCTTCTCCAATAATTAGCA 58.474 39.130 0.00 0.00 37.14 3.49
132 133 5.505173 TTGCTGCTTCTCCAATAATTAGC 57.495 39.130 0.00 0.00 0.00 3.09
133 134 7.437267 CCATTTTGCTGCTTCTCCAATAATTAG 59.563 37.037 0.00 0.00 0.00 1.73
134 135 7.267128 CCATTTTGCTGCTTCTCCAATAATTA 58.733 34.615 0.00 0.00 0.00 1.40
135 136 6.110707 CCATTTTGCTGCTTCTCCAATAATT 58.889 36.000 0.00 0.00 0.00 1.40
136 137 5.395990 CCCATTTTGCTGCTTCTCCAATAAT 60.396 40.000 0.00 0.00 0.00 1.28
137 138 4.081531 CCCATTTTGCTGCTTCTCCAATAA 60.082 41.667 0.00 0.00 0.00 1.40
138 139 3.448301 CCCATTTTGCTGCTTCTCCAATA 59.552 43.478 0.00 0.00 0.00 1.90
139 140 2.235402 CCCATTTTGCTGCTTCTCCAAT 59.765 45.455 0.00 0.00 0.00 3.16
151 152 1.745653 GTGAGCCTAGACCCATTTTGC 59.254 52.381 0.00 0.00 0.00 3.68
161 162 1.003580 CCTTTGCAAGGTGAGCCTAGA 59.996 52.381 7.87 0.00 46.33 2.43
162 163 1.457346 CCTTTGCAAGGTGAGCCTAG 58.543 55.000 7.87 0.00 46.33 3.02
163 164 3.650647 CCTTTGCAAGGTGAGCCTA 57.349 52.632 7.87 0.00 46.33 3.93
278 279 0.798776 CATTTCTGACCGACTGTGCC 59.201 55.000 0.00 0.00 0.00 5.01
298 299 3.695060 GAGGATTCCTGTAGTTCGAGACA 59.305 47.826 10.74 0.00 31.76 3.41
325 329 2.023673 CTGCAGAAACTGTGGGTTTGA 58.976 47.619 8.42 0.00 46.77 2.69
354 358 7.936847 ACATTCTGTAGGTTTCTATTGTGTTCA 59.063 33.333 0.00 0.00 0.00 3.18
387 391 1.475403 TTCTAGCCGCAAGAGTAGCT 58.525 50.000 0.00 0.00 43.02 3.32
388 392 2.295253 TTTCTAGCCGCAAGAGTAGC 57.705 50.000 0.00 0.00 43.02 3.58
392 397 4.745125 TCGAATTATTTCTAGCCGCAAGAG 59.255 41.667 0.00 0.00 43.02 2.85
397 402 4.375105 CGTTCTCGAATTATTTCTAGCCGC 60.375 45.833 0.00 0.00 39.71 6.53
523 541 2.444706 CCCATCTGCCTCGAGGGA 60.445 66.667 32.06 28.79 42.25 4.20
640 658 0.171231 CGATCCGTCTCAGAGTTGCA 59.829 55.000 0.00 0.00 0.00 4.08
641 659 0.526524 CCGATCCGTCTCAGAGTTGC 60.527 60.000 0.00 0.00 0.00 4.17
642 660 0.526524 GCCGATCCGTCTCAGAGTTG 60.527 60.000 0.00 0.00 0.00 3.16
643 661 0.965866 TGCCGATCCGTCTCAGAGTT 60.966 55.000 0.00 0.00 0.00 3.01
644 662 0.753479 ATGCCGATCCGTCTCAGAGT 60.753 55.000 0.00 0.00 0.00 3.24
672 701 0.613012 CCCCTCTTCCCCTGCTTTTG 60.613 60.000 0.00 0.00 0.00 2.44
677 706 1.789576 TTGTTCCCCTCTTCCCCTGC 61.790 60.000 0.00 0.00 0.00 4.85
785 2299 4.202111 CCTGCAAGATTTAATTAACCGGGG 60.202 45.833 6.32 0.00 34.07 5.73
810 2324 0.878961 GCGTGGGATTAGCGTAAGGG 60.879 60.000 0.00 0.00 38.28 3.95
812 2326 0.104304 AGGCGTGGGATTAGCGTAAG 59.896 55.000 0.00 0.00 43.44 2.34
824 2338 0.469917 AGATGGGTGATTAGGCGTGG 59.530 55.000 0.00 0.00 0.00 4.94
827 2341 0.946221 GCGAGATGGGTGATTAGGCG 60.946 60.000 0.00 0.00 0.00 5.52
850 2365 8.392372 AGTATGATTAGTGCGAGATTACTGTA 57.608 34.615 0.00 0.00 0.00 2.74
957 2482 1.153449 CCGATGGTAAAGCAGGCGA 60.153 57.895 8.25 0.00 0.00 5.54
958 2483 2.180204 CCCGATGGTAAAGCAGGCG 61.180 63.158 0.00 0.00 0.00 5.52
959 2484 1.077716 ACCCGATGGTAAAGCAGGC 60.078 57.895 0.00 0.00 45.45 4.85
1046 2586 4.570663 CCTCCATCCCGTCGTCGC 62.571 72.222 0.00 0.00 35.54 5.19
1203 2749 3.560251 CCGGCGAAGGGGATGGAT 61.560 66.667 9.30 0.00 0.00 3.41
1353 3162 1.107945 ACGAAACCAACCCCAAACAG 58.892 50.000 0.00 0.00 0.00 3.16
1392 3202 0.034089 ATCACAAACCCTAGCCTGCC 60.034 55.000 0.00 0.00 0.00 4.85
1423 3233 3.314080 CAGCAGTTAAACCCTCACGAAAA 59.686 43.478 0.00 0.00 0.00 2.29
1439 3249 1.466167 GCATGACATCGAAACAGCAGT 59.534 47.619 0.00 0.00 0.00 4.40
1440 3250 1.528400 CGCATGACATCGAAACAGCAG 60.528 52.381 0.00 0.00 0.00 4.24
1442 3252 0.443869 ACGCATGACATCGAAACAGC 59.556 50.000 12.27 0.00 0.00 4.40
1443 3253 1.201954 CCACGCATGACATCGAAACAG 60.202 52.381 12.27 0.00 0.00 3.16
1444 3254 0.795698 CCACGCATGACATCGAAACA 59.204 50.000 12.27 0.00 0.00 2.83
1445 3255 0.796312 ACCACGCATGACATCGAAAC 59.204 50.000 12.27 0.00 0.00 2.78
1446 3256 2.267426 CTACCACGCATGACATCGAAA 58.733 47.619 12.27 0.00 0.00 3.46
1484 3299 1.009829 AGCGATGTCGAAATTCAGCC 58.990 50.000 6.60 0.00 43.02 4.85
1513 3328 2.373335 ATGTAACACCAAACAGCCCA 57.627 45.000 0.00 0.00 0.00 5.36
1547 3362 5.753438 GGCAAAAGGAAGGACTTTAACTTTG 59.247 40.000 9.48 7.65 39.63 2.77
1548 3363 5.661312 AGGCAAAAGGAAGGACTTTAACTTT 59.339 36.000 0.00 0.00 39.63 2.66
1551 3366 4.341235 ACAGGCAAAAGGAAGGACTTTAAC 59.659 41.667 0.00 0.00 39.63 2.01
1574 3389 6.090763 CGTCTTCATAGAAGCATACAACAACA 59.909 38.462 1.96 0.00 30.65 3.33
1575 3390 6.470160 CGTCTTCATAGAAGCATACAACAAC 58.530 40.000 1.96 0.00 30.65 3.32
1598 3413 6.145534 ACCTACATTACGATGATACATTTGCG 59.854 38.462 0.00 0.00 36.73 4.85
1613 3428 5.235516 AGTACAACACAGCACCTACATTAC 58.764 41.667 0.00 0.00 0.00 1.89
1634 3449 0.264955 ACATATGGGACGGAGGGAGT 59.735 55.000 7.80 0.00 0.00 3.85
1635 3450 2.304221 TACATATGGGACGGAGGGAG 57.696 55.000 7.80 0.00 0.00 4.30
1637 3452 2.563179 CTCTTACATATGGGACGGAGGG 59.437 54.545 7.80 0.00 0.00 4.30
1639 3454 3.637229 ACACTCTTACATATGGGACGGAG 59.363 47.826 7.80 9.18 0.00 4.63
1640 3455 3.635373 GACACTCTTACATATGGGACGGA 59.365 47.826 7.80 0.00 0.00 4.69
1641 3456 3.383505 TGACACTCTTACATATGGGACGG 59.616 47.826 7.80 0.00 0.00 4.79
1642 3457 4.649088 TGACACTCTTACATATGGGACG 57.351 45.455 7.80 0.00 0.00 4.79
1643 3458 7.681939 TTTTTGACACTCTTACATATGGGAC 57.318 36.000 7.80 0.00 0.00 4.46
1664 3479 6.938030 TCTGTCCCATAATGTAAGACGTTTTT 59.062 34.615 0.00 0.00 0.00 1.94
1665 3480 6.469410 TCTGTCCCATAATGTAAGACGTTTT 58.531 36.000 0.00 0.00 0.00 2.43
1666 3481 6.045072 TCTGTCCCATAATGTAAGACGTTT 57.955 37.500 0.00 0.00 0.00 3.60
1667 3482 5.395324 CCTCTGTCCCATAATGTAAGACGTT 60.395 44.000 0.00 0.00 0.00 3.99
1668 3483 4.099573 CCTCTGTCCCATAATGTAAGACGT 59.900 45.833 0.00 0.00 0.00 4.34
1669 3484 4.501571 CCCTCTGTCCCATAATGTAAGACG 60.502 50.000 0.00 0.00 0.00 4.18
1670 3485 4.654262 TCCCTCTGTCCCATAATGTAAGAC 59.346 45.833 0.00 0.00 0.00 3.01
1671 3486 4.890988 TCCCTCTGTCCCATAATGTAAGA 58.109 43.478 0.00 0.00 0.00 2.10
1672 3487 4.656112 ACTCCCTCTGTCCCATAATGTAAG 59.344 45.833 0.00 0.00 0.00 2.34
1673 3488 4.631234 ACTCCCTCTGTCCCATAATGTAA 58.369 43.478 0.00 0.00 0.00 2.41
1674 3489 4.280789 ACTCCCTCTGTCCCATAATGTA 57.719 45.455 0.00 0.00 0.00 2.29
1675 3490 3.136641 ACTCCCTCTGTCCCATAATGT 57.863 47.619 0.00 0.00 0.00 2.71
1676 3491 4.840680 TCATACTCCCTCTGTCCCATAATG 59.159 45.833 0.00 0.00 0.00 1.90
1677 3492 5.093236 TCATACTCCCTCTGTCCCATAAT 57.907 43.478 0.00 0.00 0.00 1.28
1678 3493 4.552883 TCATACTCCCTCTGTCCCATAA 57.447 45.455 0.00 0.00 0.00 1.90
1679 3494 4.767000 ATCATACTCCCTCTGTCCCATA 57.233 45.455 0.00 0.00 0.00 2.74
1680 3495 3.645053 ATCATACTCCCTCTGTCCCAT 57.355 47.619 0.00 0.00 0.00 4.00
1681 3496 3.051803 AGAATCATACTCCCTCTGTCCCA 60.052 47.826 0.00 0.00 0.00 4.37
1682 3497 3.582164 AGAATCATACTCCCTCTGTCCC 58.418 50.000 0.00 0.00 0.00 4.46
1683 3498 4.651503 TGAAGAATCATACTCCCTCTGTCC 59.348 45.833 0.00 0.00 0.00 4.02
1684 3499 5.860941 TGAAGAATCATACTCCCTCTGTC 57.139 43.478 0.00 0.00 0.00 3.51
1685 3500 5.454471 GCATGAAGAATCATACTCCCTCTGT 60.454 44.000 0.00 0.00 44.53 3.41
1686 3501 4.996122 GCATGAAGAATCATACTCCCTCTG 59.004 45.833 0.00 0.00 44.53 3.35
1687 3502 4.906664 AGCATGAAGAATCATACTCCCTCT 59.093 41.667 0.00 0.00 44.53 3.69
1688 3503 4.996122 CAGCATGAAGAATCATACTCCCTC 59.004 45.833 0.00 0.00 44.53 4.30
1689 3504 4.657504 TCAGCATGAAGAATCATACTCCCT 59.342 41.667 0.00 0.00 45.97 4.20
1690 3505 4.965814 TCAGCATGAAGAATCATACTCCC 58.034 43.478 0.00 0.00 45.97 4.30
1829 3672 8.853469 AACGCTCTAACTAGTGTACATAATTC 57.147 34.615 0.00 0.00 39.24 2.17
1852 3695 2.504367 ACACCAGCAATCCACACTAAC 58.496 47.619 0.00 0.00 0.00 2.34
1903 3770 7.067981 AGAGTCAGGCCATTCTGATTTATTTTC 59.932 37.037 5.01 0.00 44.43 2.29
1908 3775 4.225942 ACAGAGTCAGGCCATTCTGATTTA 59.774 41.667 23.88 0.00 44.43 1.40
2112 3985 7.095439 GGCTTACATGACTGTAGATAGAAATGC 60.095 40.741 0.00 0.00 39.00 3.56
2113 3986 8.147058 AGGCTTACATGACTGTAGATAGAAATG 58.853 37.037 0.00 0.00 39.00 2.32
2121 3997 3.982516 AGGAGGCTTACATGACTGTAGA 58.017 45.455 0.00 0.00 39.00 2.59
2228 4104 4.667262 TGGAAGTTCATGAAACGTTTGTG 58.333 39.130 20.10 16.32 43.02 3.33
2311 4187 2.290367 CACACGACAAATGAAGAAGGCA 59.710 45.455 0.00 0.00 0.00 4.75
2331 4207 3.072038 AGACTGCATTATGAGGCATAGCA 59.928 43.478 0.00 0.00 42.31 3.49
2335 4211 3.072038 TGCTAGACTGCATTATGAGGCAT 59.928 43.478 0.00 0.00 42.31 4.40
2462 4338 9.607988 TTCTGTCACTTCTTAATGTTTTGACTA 57.392 29.630 0.00 0.00 34.33 2.59
2625 4519 5.593095 TGCTTACCTAGTAGTACATGACCAG 59.407 44.000 0.00 0.00 0.00 4.00
2626 4520 5.512298 TGCTTACCTAGTAGTACATGACCA 58.488 41.667 0.00 0.00 0.00 4.02
2670 4564 4.202315 GGGGTGACAATTGCTTACCTTTTT 60.202 41.667 19.57 0.00 0.00 1.94
2671 4565 3.323691 GGGGTGACAATTGCTTACCTTTT 59.676 43.478 19.57 0.00 0.00 2.27
2672 4566 2.897326 GGGGTGACAATTGCTTACCTTT 59.103 45.455 19.57 0.00 0.00 3.11
2673 4567 2.158385 TGGGGTGACAATTGCTTACCTT 60.158 45.455 19.57 0.00 0.00 3.50
2674 4568 1.427368 TGGGGTGACAATTGCTTACCT 59.573 47.619 19.57 0.00 0.00 3.08
2675 4569 1.818674 CTGGGGTGACAATTGCTTACC 59.181 52.381 5.05 11.14 0.00 2.85
2676 4570 2.514803 ACTGGGGTGACAATTGCTTAC 58.485 47.619 5.05 2.12 0.00 2.34
2677 4571 2.969821 ACTGGGGTGACAATTGCTTA 57.030 45.000 5.05 0.00 0.00 3.09
2678 4572 2.108250 ACTACTGGGGTGACAATTGCTT 59.892 45.455 5.05 0.00 0.00 3.91
2679 4573 1.705186 ACTACTGGGGTGACAATTGCT 59.295 47.619 5.05 0.00 0.00 3.91
2680 4574 1.812571 CACTACTGGGGTGACAATTGC 59.187 52.381 5.05 0.00 36.89 3.56
2681 4575 1.812571 GCACTACTGGGGTGACAATTG 59.187 52.381 3.24 3.24 36.89 2.32
2682 4576 1.423541 TGCACTACTGGGGTGACAATT 59.576 47.619 6.48 0.00 36.89 2.32
2683 4577 1.064003 TGCACTACTGGGGTGACAAT 58.936 50.000 6.48 0.00 36.89 2.71
2684 4578 0.840617 TTGCACTACTGGGGTGACAA 59.159 50.000 6.48 7.04 36.89 3.18
2685 4579 0.840617 TTTGCACTACTGGGGTGACA 59.159 50.000 6.48 2.43 36.89 3.58
2686 4580 1.975660 TTTTGCACTACTGGGGTGAC 58.024 50.000 6.48 0.36 36.89 3.67
2687 4581 2.107378 TCATTTTGCACTACTGGGGTGA 59.893 45.455 6.48 0.00 36.89 4.02
2688 4582 2.513753 TCATTTTGCACTACTGGGGTG 58.486 47.619 0.00 0.00 37.70 4.61
2689 4583 2.969821 TCATTTTGCACTACTGGGGT 57.030 45.000 0.00 0.00 0.00 4.95
2690 4584 4.497300 CAAATCATTTTGCACTACTGGGG 58.503 43.478 0.00 0.00 36.13 4.96
2809 4703 1.603931 GGTCGCCTTACCGCCTTATAC 60.604 57.143 0.00 0.00 0.00 1.47
2828 4732 0.811616 GTCATGGTGCTCGCCTTAGG 60.812 60.000 0.00 0.00 0.00 2.69
2830 4734 1.153647 CGTCATGGTGCTCGCCTTA 60.154 57.895 0.86 0.00 0.00 2.69
2831 4735 2.434884 CGTCATGGTGCTCGCCTT 60.435 61.111 0.86 0.00 0.00 4.35
2834 4738 3.716539 TAGGCGTCATGGTGCTCGC 62.717 63.158 9.44 9.74 46.42 5.03
2836 4740 1.884926 GCTAGGCGTCATGGTGCTC 60.885 63.158 9.44 1.66 0.00 4.26
2837 4741 2.187946 GCTAGGCGTCATGGTGCT 59.812 61.111 9.44 0.51 0.00 4.40
2838 4742 2.897350 GGCTAGGCGTCATGGTGC 60.897 66.667 0.00 0.00 0.00 5.01
2840 4744 4.530857 GCGGCTAGGCGTCATGGT 62.531 66.667 35.06 0.00 0.00 3.55
3025 4960 9.995003 AATCTATTAGAAAAGTATGAGAGCAGG 57.005 33.333 0.00 0.00 0.00 4.85
3072 5007 7.528996 TCAAAATGGGAATATATGCAGAAGG 57.471 36.000 0.00 0.00 0.00 3.46
3544 5481 7.672983 TTAGAAGCTGACTTTGTATTCAAGG 57.327 36.000 0.00 0.00 35.82 3.61
3583 5520 3.865446 AGGCATGGCTAAAAATGAAAGC 58.135 40.909 22.00 0.00 35.47 3.51
4130 6072 5.519927 GCAATGGCAAGGACAAATATACAAC 59.480 40.000 0.00 0.00 40.72 3.32
4368 6312 8.816894 AGACGTATCTAATCCCAACAATATGAT 58.183 33.333 0.00 0.00 31.46 2.45
4442 6387 6.506538 AGCCTAGGATGATTACTGAAACAT 57.493 37.500 14.75 0.00 0.00 2.71
4470 6415 9.748708 CAGTCTTTATCATTTCCTTTTTCACAA 57.251 29.630 0.00 0.00 0.00 3.33
4472 6417 9.185192 CACAGTCTTTATCATTTCCTTTTTCAC 57.815 33.333 0.00 0.00 0.00 3.18
4477 6422 9.918630 CAATTCACAGTCTTTATCATTTCCTTT 57.081 29.630 0.00 0.00 0.00 3.11
4478 6423 9.300681 TCAATTCACAGTCTTTATCATTTCCTT 57.699 29.630 0.00 0.00 0.00 3.36
4480 6425 9.912634 TTTCAATTCACAGTCTTTATCATTTCC 57.087 29.630 0.00 0.00 0.00 3.13
4484 6429 9.512588 AGAGTTTCAATTCACAGTCTTTATCAT 57.487 29.630 0.00 0.00 0.00 2.45
4485 6430 8.908786 AGAGTTTCAATTCACAGTCTTTATCA 57.091 30.769 0.00 0.00 0.00 2.15
4486 6431 8.993121 TGAGAGTTTCAATTCACAGTCTTTATC 58.007 33.333 0.00 0.00 31.34 1.75
4487 6432 8.778358 GTGAGAGTTTCAATTCACAGTCTTTAT 58.222 33.333 0.00 0.00 39.67 1.40
4488 6433 7.226720 GGTGAGAGTTTCAATTCACAGTCTTTA 59.773 37.037 5.91 0.00 41.22 1.85
4489 6434 6.038714 GGTGAGAGTTTCAATTCACAGTCTTT 59.961 38.462 5.91 0.00 41.22 2.52
4490 6435 5.529060 GGTGAGAGTTTCAATTCACAGTCTT 59.471 40.000 5.91 0.00 41.22 3.01
4491 6436 5.059833 GGTGAGAGTTTCAATTCACAGTCT 58.940 41.667 5.91 0.00 41.22 3.24
4492 6437 5.059833 AGGTGAGAGTTTCAATTCACAGTC 58.940 41.667 5.91 0.00 41.22 3.51
4493 6438 5.041191 AGGTGAGAGTTTCAATTCACAGT 57.959 39.130 5.91 0.00 41.22 3.55
4494 6439 7.678947 AATAGGTGAGAGTTTCAATTCACAG 57.321 36.000 5.91 0.00 41.22 3.66
4495 6440 7.939039 AGAAATAGGTGAGAGTTTCAATTCACA 59.061 33.333 5.91 0.00 41.22 3.58
4496 6441 8.329203 AGAAATAGGTGAGAGTTTCAATTCAC 57.671 34.615 0.00 0.00 37.61 3.18
4497 6442 8.786898 CAAGAAATAGGTGAGAGTTTCAATTCA 58.213 33.333 0.00 0.00 37.61 2.57
4498 6443 8.239998 CCAAGAAATAGGTGAGAGTTTCAATTC 58.760 37.037 0.00 0.00 37.61 2.17
4499 6444 7.309438 GCCAAGAAATAGGTGAGAGTTTCAATT 60.309 37.037 0.00 0.00 37.61 2.32
4500 6445 6.151817 GCCAAGAAATAGGTGAGAGTTTCAAT 59.848 38.462 0.00 0.00 37.61 2.57
4501 6446 5.473504 GCCAAGAAATAGGTGAGAGTTTCAA 59.526 40.000 0.00 0.00 37.61 2.69
4502 6447 5.003804 GCCAAGAAATAGGTGAGAGTTTCA 58.996 41.667 0.00 0.00 34.02 2.69
4503 6448 4.396478 GGCCAAGAAATAGGTGAGAGTTTC 59.604 45.833 0.00 0.00 0.00 2.78
4504 6449 4.336280 GGCCAAGAAATAGGTGAGAGTTT 58.664 43.478 0.00 0.00 0.00 2.66
4505 6450 3.308473 GGGCCAAGAAATAGGTGAGAGTT 60.308 47.826 4.39 0.00 0.00 3.01
4506 6451 2.239907 GGGCCAAGAAATAGGTGAGAGT 59.760 50.000 4.39 0.00 0.00 3.24
4507 6452 2.743183 CGGGCCAAGAAATAGGTGAGAG 60.743 54.545 4.39 0.00 0.00 3.20
4508 6453 1.209504 CGGGCCAAGAAATAGGTGAGA 59.790 52.381 4.39 0.00 0.00 3.27
4509 6454 1.065418 ACGGGCCAAGAAATAGGTGAG 60.065 52.381 4.39 0.00 0.00 3.51
4510 6455 0.988832 ACGGGCCAAGAAATAGGTGA 59.011 50.000 4.39 0.00 0.00 4.02
4511 6456 1.472480 CAACGGGCCAAGAAATAGGTG 59.528 52.381 4.39 0.00 0.00 4.00
4512 6457 1.615919 CCAACGGGCCAAGAAATAGGT 60.616 52.381 4.39 0.00 0.00 3.08
4513 6458 1.102978 CCAACGGGCCAAGAAATAGG 58.897 55.000 4.39 0.00 0.00 2.57
4514 6459 1.743394 GACCAACGGGCCAAGAAATAG 59.257 52.381 4.39 0.00 37.90 1.73
4515 6460 1.828979 GACCAACGGGCCAAGAAATA 58.171 50.000 4.39 0.00 37.90 1.40
4516 6461 2.653557 GACCAACGGGCCAAGAAAT 58.346 52.632 4.39 0.00 37.90 2.17
4517 6462 4.167597 GACCAACGGGCCAAGAAA 57.832 55.556 4.39 0.00 37.90 2.52
4524 6469 2.400269 TACACTTGGGACCAACGGGC 62.400 60.000 0.00 0.00 37.90 6.13
4525 6470 0.108963 TTACACTTGGGACCAACGGG 59.891 55.000 0.00 0.92 41.29 5.28
4526 6471 1.877443 CTTTACACTTGGGACCAACGG 59.123 52.381 0.00 0.00 0.00 4.44
4527 6472 1.877443 CCTTTACACTTGGGACCAACG 59.123 52.381 0.00 0.00 0.00 4.10
4528 6473 2.882761 GTCCTTTACACTTGGGACCAAC 59.117 50.000 0.00 0.00 41.48 3.77
4529 6474 2.510382 TGTCCTTTACACTTGGGACCAA 59.490 45.455 3.43 3.43 45.29 3.67
4530 6475 2.105821 CTGTCCTTTACACTTGGGACCA 59.894 50.000 8.25 0.00 45.29 4.02
4531 6476 2.105993 ACTGTCCTTTACACTTGGGACC 59.894 50.000 8.25 0.00 45.29 4.46
4532 6477 3.139077 CACTGTCCTTTACACTTGGGAC 58.861 50.000 0.00 0.00 45.86 4.46
4533 6478 2.775384 ACACTGTCCTTTACACTTGGGA 59.225 45.455 0.00 0.00 33.45 4.37
4534 6479 2.878406 CACACTGTCCTTTACACTTGGG 59.122 50.000 0.00 0.00 33.45 4.12
4535 6480 3.804036 TCACACTGTCCTTTACACTTGG 58.196 45.455 0.00 0.00 33.45 3.61
4536 6481 5.050091 GTGATCACACTGTCCTTTACACTTG 60.050 44.000 21.07 0.00 42.99 3.16
4537 6482 5.057149 GTGATCACACTGTCCTTTACACTT 58.943 41.667 21.07 0.00 42.99 3.16
4538 6483 4.503296 GGTGATCACACTGTCCTTTACACT 60.503 45.833 26.47 0.00 45.32 3.55
4539 6484 3.746492 GGTGATCACACTGTCCTTTACAC 59.254 47.826 26.47 0.90 45.32 2.90
4621 6571 4.099419 AGCACAGACGGACATGACATATAA 59.901 41.667 0.00 0.00 0.00 0.98
4624 6574 1.824852 AGCACAGACGGACATGACATA 59.175 47.619 0.00 0.00 0.00 2.29
4628 6578 1.202348 CTACAGCACAGACGGACATGA 59.798 52.381 0.00 0.00 0.00 3.07
4683 6633 2.287188 GCACAACACAGACATCCACTTG 60.287 50.000 0.00 0.00 0.00 3.16
4684 6634 1.949525 GCACAACACAGACATCCACTT 59.050 47.619 0.00 0.00 0.00 3.16
4688 6638 1.949525 ACTTGCACAACACAGACATCC 59.050 47.619 0.00 0.00 0.00 3.51
4691 6641 1.093972 CCACTTGCACAACACAGACA 58.906 50.000 0.00 0.00 0.00 3.41
4692 6642 1.378531 TCCACTTGCACAACACAGAC 58.621 50.000 0.00 0.00 0.00 3.51
4698 6648 3.181487 ACTGTCAATTCCACTTGCACAAC 60.181 43.478 0.00 0.00 0.00 3.32
4746 6696 2.159184 TGCAGAGACAAATAGCGGAGAG 60.159 50.000 0.00 0.00 0.00 3.20
4752 6702 5.277250 GCAGTAGATTGCAGAGACAAATAGC 60.277 44.000 0.00 0.00 43.53 2.97
4776 6726 2.291741 GTGAGCAAGGAAAACCAGTCAG 59.708 50.000 0.00 0.00 0.00 3.51
4960 6917 1.134491 GGTTACCGCTTAGTGCCAGAT 60.134 52.381 0.00 0.00 38.78 2.90
4963 6920 1.079681 CGGTTACCGCTTAGTGCCA 60.080 57.895 11.93 0.00 41.17 4.92
5007 6964 3.516615 CAGAATCAGGACTCGGTTTCTC 58.483 50.000 0.00 0.00 29.15 2.87
5189 7162 1.496857 TGATTCACTCAACCAACCCCA 59.503 47.619 0.00 0.00 0.00 4.96
5275 7248 1.195115 ATTGCCCTAGCGAGTCTGAA 58.805 50.000 0.00 0.00 44.31 3.02
5286 7259 2.683742 GCAACTGCCTCTTATTGCCCTA 60.684 50.000 0.00 0.00 41.25 3.53
5324 7297 6.338146 CGTGAGTAATTCTTCAGGATTACCA 58.662 40.000 12.64 8.79 38.94 3.25
5347 7320 1.812922 CTGCTACCAGGCTTCTGCG 60.813 63.158 0.00 0.00 40.82 5.18
5369 7342 6.501781 CCAAGTCAGAAATGGAGCAATATTC 58.498 40.000 0.00 0.00 36.27 1.75
5372 7345 3.696051 GCCAAGTCAGAAATGGAGCAATA 59.304 43.478 6.88 0.00 36.27 1.90
5438 7411 0.991920 TCCCAATTCACAGGACCTCC 59.008 55.000 0.00 0.00 0.00 4.30
5482 7466 1.767036 CATTGGTGGTGGAGGTGGA 59.233 57.895 0.00 0.00 0.00 4.02
5483 7467 1.978617 GCATTGGTGGTGGAGGTGG 60.979 63.158 0.00 0.00 0.00 4.61
5484 7468 0.327924 TAGCATTGGTGGTGGAGGTG 59.672 55.000 0.00 0.00 37.28 4.00
5485 7469 0.328258 GTAGCATTGGTGGTGGAGGT 59.672 55.000 0.00 0.00 37.28 3.85
5486 7470 0.394352 GGTAGCATTGGTGGTGGAGG 60.394 60.000 0.00 0.00 37.28 4.30
5487 7471 0.744414 CGGTAGCATTGGTGGTGGAG 60.744 60.000 0.00 0.00 37.28 3.86
5517 7501 4.592942 TCATCTGCAGGCAAGTAAATTCT 58.407 39.130 15.13 0.00 0.00 2.40
5518 7502 4.732938 GCTCATCTGCAGGCAAGTAAATTC 60.733 45.833 15.13 0.00 0.00 2.17
5519 7503 3.129988 GCTCATCTGCAGGCAAGTAAATT 59.870 43.478 15.13 0.00 0.00 1.82
5520 7504 2.686915 GCTCATCTGCAGGCAAGTAAAT 59.313 45.455 15.13 0.00 0.00 1.40
5521 7505 2.086869 GCTCATCTGCAGGCAAGTAAA 58.913 47.619 15.13 0.00 0.00 2.01
5522 7506 1.280133 AGCTCATCTGCAGGCAAGTAA 59.720 47.619 15.13 0.00 34.99 2.24
5523 7507 0.907486 AGCTCATCTGCAGGCAAGTA 59.093 50.000 15.13 0.00 34.99 2.24
5524 7508 0.677098 CAGCTCATCTGCAGGCAAGT 60.677 55.000 15.13 0.00 35.78 3.16
5525 7509 1.377366 CCAGCTCATCTGCAGGCAAG 61.377 60.000 15.13 9.62 41.50 4.01
5526 7510 1.378119 CCAGCTCATCTGCAGGCAA 60.378 57.895 15.13 0.00 41.50 4.52
5527 7511 2.271173 CCAGCTCATCTGCAGGCA 59.729 61.111 15.13 0.00 41.50 4.75
5544 7528 2.374184 TCTTGTCAGAGAGCTCTAGGC 58.626 52.381 18.25 14.60 37.98 3.93
5577 7561 2.985809 CTCTCTCAGCTCAAACAGAACG 59.014 50.000 0.00 0.00 0.00 3.95
5586 7573 1.206610 GCAATGGTCTCTCTCAGCTCA 59.793 52.381 0.00 0.00 0.00 4.26
5620 7607 6.394809 TCAATTTAGAGAGTGCACGATGTTA 58.605 36.000 12.01 0.00 0.00 2.41
5621 7608 5.237815 TCAATTTAGAGAGTGCACGATGTT 58.762 37.500 12.01 0.00 0.00 2.71
5622 7609 4.820897 TCAATTTAGAGAGTGCACGATGT 58.179 39.130 12.01 5.20 0.00 3.06
5634 7623 9.663904 TTTCTTGTTCGTTCATTCAATTTAGAG 57.336 29.630 0.00 0.00 0.00 2.43
5637 7626 8.191446 TGGTTTCTTGTTCGTTCATTCAATTTA 58.809 29.630 0.00 0.00 0.00 1.40
5641 7630 5.568685 TGGTTTCTTGTTCGTTCATTCAA 57.431 34.783 0.00 0.00 0.00 2.69
5663 7652 8.743085 AGATGCTGTATATCTGAAACATGTTT 57.257 30.769 23.49 23.49 33.79 2.83
5684 7673 4.928573 TATGCCCAACATGTCTGGAAGATG 60.929 45.833 21.54 5.92 42.52 2.90
5743 7747 1.066215 CAACTCATCGTGTCCATCCCA 60.066 52.381 0.00 0.00 0.00 4.37
5749 7753 1.009829 GATGGCAACTCATCGTGTCC 58.990 55.000 0.00 0.00 34.90 4.02
5757 7761 3.950794 GACCGGCGATGGCAACTCA 62.951 63.158 9.30 0.00 42.47 3.41
5779 7783 5.047566 TGAGACCTTGGAGAGAGAGATAG 57.952 47.826 0.00 0.00 0.00 2.08
5781 7785 3.902218 CTGAGACCTTGGAGAGAGAGAT 58.098 50.000 0.00 0.00 0.00 2.75
5786 7790 0.251386 ACGCTGAGACCTTGGAGAGA 60.251 55.000 0.00 0.00 0.00 3.10
5787 7791 0.108898 CACGCTGAGACCTTGGAGAG 60.109 60.000 0.00 0.00 0.00 3.20
5788 7792 1.967535 CACGCTGAGACCTTGGAGA 59.032 57.895 0.00 0.00 0.00 3.71
5789 7793 1.739562 GCACGCTGAGACCTTGGAG 60.740 63.158 0.00 0.00 0.00 3.86
5790 7794 2.343758 GCACGCTGAGACCTTGGA 59.656 61.111 0.00 0.00 0.00 3.53
5791 7795 2.743928 GGCACGCTGAGACCTTGG 60.744 66.667 0.00 0.00 0.00 3.61
5793 7797 4.021925 GGGGCACGCTGAGACCTT 62.022 66.667 0.00 0.00 38.67 3.50


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.