Multiple sequence alignment - TraesCS5D01G471000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G471000 chr5D 100.000 5501 0 0 1 5501 512199255 512204755 0.000000e+00 10159.0
1 TraesCS5D01G471000 chr5D 97.143 105 1 2 5028 5131 56450159 56450262 5.660000e-40 176.0
2 TraesCS5D01G471000 chr5B 91.830 1738 83 30 1 1702 643166765 643168479 0.000000e+00 2368.0
3 TraesCS5D01G471000 chr5B 87.848 1399 97 30 1862 3230 643168516 643169871 0.000000e+00 1574.0
4 TraesCS5D01G471000 chr5B 95.839 793 24 6 4165 4953 643170823 643171610 0.000000e+00 1273.0
5 TraesCS5D01G471000 chr5B 84.010 419 27 22 3315 3726 643169902 643170287 3.130000e-97 366.0
6 TraesCS5D01G471000 chr5B 81.651 436 44 18 4903 5309 643171610 643172038 4.110000e-86 329.0
7 TraesCS5D01G471000 chr5B 83.333 132 8 2 5321 5452 611798589 611798706 5.830000e-20 110.0
8 TraesCS5D01G471000 chr5A 90.382 1258 57 28 3904 5123 640602983 640604214 0.000000e+00 1594.0
9 TraesCS5D01G471000 chr5A 88.170 1344 103 18 1834 3155 640601011 640602320 0.000000e+00 1550.0
10 TraesCS5D01G471000 chr5A 90.180 835 42 11 911 1708 640600183 640601014 0.000000e+00 1051.0
11 TraesCS5D01G471000 chr5A 83.623 806 71 25 1 766 640598963 640599747 0.000000e+00 701.0
12 TraesCS5D01G471000 chr5A 87.580 314 25 11 3315 3622 640602389 640602694 8.770000e-93 351.0
13 TraesCS5D01G471000 chr5A 93.407 182 10 2 5320 5501 640604492 640604671 9.080000e-68 268.0
14 TraesCS5D01G471000 chr5A 87.179 117 10 3 5201 5315 640604325 640604438 1.610000e-25 128.0
15 TraesCS5D01G471000 chr5A 90.000 50 4 1 5437 5486 400485192 400485144 4.600000e-06 63.9
16 TraesCS5D01G471000 chr3A 98.969 97 0 1 5034 5129 532331232 532331328 7.330000e-39 172.0
17 TraesCS5D01G471000 chr3A 95.000 100 5 0 5025 5124 744061696 744061795 2.050000e-34 158.0
18 TraesCS5D01G471000 chr3A 88.889 54 5 1 5434 5486 506462029 506462082 1.280000e-06 65.8
19 TraesCS5D01G471000 chr3B 97.938 97 1 1 5034 5129 545187362 545187266 3.410000e-37 167.0
20 TraesCS5D01G471000 chr1A 97.938 97 1 1 5027 5122 554280634 554280538 3.410000e-37 167.0
21 TraesCS5D01G471000 chr1A 97.938 97 1 1 5027 5122 554293059 554293155 3.410000e-37 167.0
22 TraesCS5D01G471000 chr1D 94.495 109 3 3 5017 5122 462471268 462471376 1.230000e-36 165.0
23 TraesCS5D01G471000 chr2B 89.855 69 7 0 5393 5461 133707130 133707198 7.590000e-14 89.8
24 TraesCS5D01G471000 chr2B 89.855 69 7 0 5393 5461 133755656 133755724 7.590000e-14 89.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G471000 chr5D 512199255 512204755 5500 False 10159.000000 10159 100.000000 1 5501 1 chr5D.!!$F2 5500
1 TraesCS5D01G471000 chr5B 643166765 643172038 5273 False 1182.000000 2368 88.235600 1 5309 5 chr5B.!!$F2 5308
2 TraesCS5D01G471000 chr5A 640598963 640604671 5708 False 806.142857 1594 88.645857 1 5501 7 chr5A.!!$F1 5500

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
379 406 0.175989 GCCGACCAAACCAAACCAAA 59.824 50.0 0.00 0.0 0.00 3.28 F
1872 2262 0.101759 TACTTGGATGTAGACCGCGC 59.898 55.0 0.00 0.0 0.00 6.86 F
2104 2506 0.108396 TGCAGCTGTGAGGTTGCTTA 59.892 50.0 16.64 0.0 42.48 3.09 F
2781 3201 0.171455 GGCACAAACGAAACACACCA 59.829 50.0 0.00 0.0 0.00 4.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2081 2483 0.240145 CAACCTCACAGCTGCACATG 59.760 55.0 15.27 4.46 0.00 3.21 R
3440 3866 0.184692 TCACAACTGGATGCCACCAA 59.815 50.0 0.87 0.00 39.59 3.67 R
3734 4165 0.464916 TCATACATGCTGGGCTGCTG 60.465 55.0 0.00 0.00 0.00 4.41 R
4777 5366 0.035458 GGTAGGCATCCCCAGAATCG 59.965 60.0 0.00 0.00 35.39 3.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
126 139 7.232534 TCCTAAAATTATGAACTTTGTGCACCT 59.767 33.333 15.69 0.00 0.00 4.00
141 158 3.258622 GTGCACCTAGTTAACCTGACTCT 59.741 47.826 5.22 0.00 0.00 3.24
145 162 2.168728 CCTAGTTAACCTGACTCTGCCC 59.831 54.545 0.88 0.00 0.00 5.36
170 191 3.009143 ACCCAACCTTTCGAAGCTTAGAT 59.991 43.478 10.23 0.00 0.00 1.98
178 199 2.473816 TCGAAGCTTAGATCATTGCGG 58.526 47.619 5.03 0.00 0.00 5.69
181 202 0.181114 AGCTTAGATCATTGCGGCCA 59.819 50.000 2.24 0.00 0.00 5.36
185 206 0.465460 TAGATCATTGCGGCCAACCC 60.465 55.000 2.24 0.00 32.95 4.11
214 239 7.403312 TTTTCATTCGATCCAACATGGTATT 57.597 32.000 0.00 0.00 39.03 1.89
225 250 5.890985 TCCAACATGGTATTGGTTCCATTAG 59.109 40.000 12.02 0.00 45.83 1.73
255 282 8.995220 GGGATAACAAAACAGGAAATAAAAACC 58.005 33.333 0.00 0.00 0.00 3.27
256 283 9.772973 GGATAACAAAACAGGAAATAAAAACCT 57.227 29.630 0.00 0.00 34.02 3.50
282 309 3.242608 CCGACCCTATTTGCATAACAACG 60.243 47.826 0.00 0.00 38.23 4.10
370 397 0.240945 CACCATTCTGCCGACCAAAC 59.759 55.000 0.00 0.00 0.00 2.93
372 399 0.893270 CCATTCTGCCGACCAAACCA 60.893 55.000 0.00 0.00 0.00 3.67
373 400 0.958091 CATTCTGCCGACCAAACCAA 59.042 50.000 0.00 0.00 0.00 3.67
374 401 1.339610 CATTCTGCCGACCAAACCAAA 59.660 47.619 0.00 0.00 0.00 3.28
375 402 0.741915 TTCTGCCGACCAAACCAAAC 59.258 50.000 0.00 0.00 0.00 2.93
376 403 1.104577 TCTGCCGACCAAACCAAACC 61.105 55.000 0.00 0.00 0.00 3.27
377 404 1.379977 TGCCGACCAAACCAAACCA 60.380 52.632 0.00 0.00 0.00 3.67
378 405 0.970937 TGCCGACCAAACCAAACCAA 60.971 50.000 0.00 0.00 0.00 3.67
379 406 0.175989 GCCGACCAAACCAAACCAAA 59.824 50.000 0.00 0.00 0.00 3.28
380 407 1.405661 GCCGACCAAACCAAACCAAAA 60.406 47.619 0.00 0.00 0.00 2.44
381 408 2.743510 GCCGACCAAACCAAACCAAAAT 60.744 45.455 0.00 0.00 0.00 1.82
407 434 5.590530 ACAAAACATGTGAGGCAAGTTAA 57.409 34.783 0.00 0.00 41.93 2.01
412 439 4.215109 ACATGTGAGGCAAGTTAAACCTT 58.785 39.130 0.00 0.00 32.67 3.50
497 524 1.211457 AGATGATGAGCACCAAGACCC 59.789 52.381 0.00 0.00 0.00 4.46
510 537 1.541588 CAAGACCCAGGCTAAAGCAAC 59.458 52.381 4.07 0.00 44.36 4.17
511 538 0.771127 AGACCCAGGCTAAAGCAACA 59.229 50.000 4.07 0.00 44.36 3.33
512 539 1.144913 AGACCCAGGCTAAAGCAACAA 59.855 47.619 4.07 0.00 44.36 2.83
651 691 3.694058 ATCTCAGCAGCCGGCCAAG 62.694 63.158 26.15 15.26 46.50 3.61
870 918 2.956077 AATCTCTCCGCCTCCCCCTC 62.956 65.000 0.00 0.00 0.00 4.30
1047 1405 1.522355 CCACCAGCAGCGGTATGAG 60.522 63.158 8.37 0.00 37.07 2.90
1110 1468 0.529992 CCCTAATCGTTGCTCGTCCC 60.530 60.000 2.39 0.00 40.80 4.46
1130 1488 4.407621 TCCCGAATCCTGATGCTTTTAGTA 59.592 41.667 0.00 0.00 0.00 1.82
1211 1573 4.920999 ACCTAGATTCCTATCTCCCGTAC 58.079 47.826 0.00 0.00 41.38 3.67
1621 2003 6.503524 AGTTTTGACGACTTTACATTGCAAT 58.496 32.000 5.99 5.99 0.00 3.56
1628 2010 5.920273 ACGACTTTACATTGCAATTTTCTGG 59.080 36.000 9.83 0.00 0.00 3.86
1631 2013 6.815089 ACTTTACATTGCAATTTTCTGGTGA 58.185 32.000 9.83 0.00 0.00 4.02
1637 2019 4.669206 TGCAATTTTCTGGTGAACATGT 57.331 36.364 0.00 0.00 31.02 3.21
1641 2023 5.403466 GCAATTTTCTGGTGAACATGTCTTC 59.597 40.000 0.00 0.00 31.02 2.87
1649 2031 3.499918 GGTGAACATGTCTTCCAACTCAG 59.500 47.826 0.00 0.00 0.00 3.35
1666 2048 6.128282 CCAACTCAGTATGCGAAGTTTGTAAT 60.128 38.462 2.08 0.00 34.76 1.89
1672 2054 8.817100 TCAGTATGCGAAGTTTGTAATGAATAG 58.183 33.333 0.00 0.00 34.76 1.73
1696 2078 5.279384 CAGCAATAACTGGCATCTGAAATC 58.721 41.667 0.00 0.00 33.85 2.17
1708 2090 7.541162 TGGCATCTGAAATCTGAAGTTTTATG 58.459 34.615 0.00 0.00 0.00 1.90
1709 2091 6.976925 GGCATCTGAAATCTGAAGTTTTATGG 59.023 38.462 0.00 0.00 0.00 2.74
1710 2092 7.363268 GGCATCTGAAATCTGAAGTTTTATGGT 60.363 37.037 0.00 0.00 0.00 3.55
1711 2093 8.677300 GCATCTGAAATCTGAAGTTTTATGGTA 58.323 33.333 0.00 0.00 0.00 3.25
1714 2096 9.739276 TCTGAAATCTGAAGTTTTATGGTATGT 57.261 29.630 0.00 0.00 0.00 2.29
1715 2097 9.994432 CTGAAATCTGAAGTTTTATGGTATGTC 57.006 33.333 0.00 0.00 0.00 3.06
1716 2098 9.513906 TGAAATCTGAAGTTTTATGGTATGTCA 57.486 29.630 0.00 0.00 0.00 3.58
1719 2101 9.466497 AATCTGAAGTTTTATGGTATGTCATGT 57.534 29.630 0.00 0.00 0.00 3.21
1720 2102 8.267620 TCTGAAGTTTTATGGTATGTCATGTG 57.732 34.615 0.00 0.00 0.00 3.21
1721 2103 7.336679 TCTGAAGTTTTATGGTATGTCATGTGG 59.663 37.037 0.00 0.00 0.00 4.17
1722 2104 6.376864 TGAAGTTTTATGGTATGTCATGTGGG 59.623 38.462 0.00 0.00 0.00 4.61
1723 2105 4.644685 AGTTTTATGGTATGTCATGTGGGC 59.355 41.667 0.00 0.00 0.00 5.36
1724 2106 3.941704 TTATGGTATGTCATGTGGGCA 57.058 42.857 0.00 0.00 0.00 5.36
1725 2107 4.451891 TTATGGTATGTCATGTGGGCAT 57.548 40.909 0.00 0.00 35.32 4.40
1739 2121 7.312657 CATGTGGGCATGTAAGCTTATATAG 57.687 40.000 14.55 10.56 45.48 1.31
1740 2122 5.804639 TGTGGGCATGTAAGCTTATATAGG 58.195 41.667 14.55 5.92 34.17 2.57
1741 2123 5.546110 TGTGGGCATGTAAGCTTATATAGGA 59.454 40.000 14.55 0.00 34.17 2.94
1742 2124 6.043822 TGTGGGCATGTAAGCTTATATAGGAA 59.956 38.462 14.55 0.75 34.17 3.36
1743 2125 6.940298 GTGGGCATGTAAGCTTATATAGGAAA 59.060 38.462 14.55 0.00 34.17 3.13
1744 2126 7.611855 GTGGGCATGTAAGCTTATATAGGAAAT 59.388 37.037 14.55 0.00 34.17 2.17
1745 2127 7.611467 TGGGCATGTAAGCTTATATAGGAAATG 59.389 37.037 14.55 4.72 34.17 2.32
1746 2128 7.829211 GGGCATGTAAGCTTATATAGGAAATGA 59.171 37.037 14.55 0.00 34.17 2.57
1747 2129 8.669243 GGCATGTAAGCTTATATAGGAAATGAC 58.331 37.037 14.55 2.11 34.17 3.06
1748 2130 8.669243 GCATGTAAGCTTATATAGGAAATGACC 58.331 37.037 14.55 0.00 0.00 4.02
1749 2131 9.167311 CATGTAAGCTTATATAGGAAATGACCC 57.833 37.037 14.55 0.00 0.00 4.46
1750 2132 8.506196 TGTAAGCTTATATAGGAAATGACCCT 57.494 34.615 9.88 0.00 37.80 4.34
1751 2133 8.594550 TGTAAGCTTATATAGGAAATGACCCTC 58.405 37.037 9.88 0.00 35.30 4.30
1752 2134 6.628644 AGCTTATATAGGAAATGACCCTCC 57.371 41.667 0.00 0.00 35.30 4.30
1753 2135 6.335115 AGCTTATATAGGAAATGACCCTCCT 58.665 40.000 0.00 0.00 44.49 3.69
1754 2136 7.488205 AGCTTATATAGGAAATGACCCTCCTA 58.512 38.462 0.50 0.50 46.03 2.94
1762 2144 6.935036 AGGAAATGACCCTCCTATAGTAAGA 58.065 40.000 0.00 0.00 40.42 2.10
1763 2145 7.013834 AGGAAATGACCCTCCTATAGTAAGAG 58.986 42.308 0.00 0.00 40.42 2.85
1764 2146 7.011382 GGAAATGACCCTCCTATAGTAAGAGA 58.989 42.308 6.18 0.00 0.00 3.10
1765 2147 7.509659 GGAAATGACCCTCCTATAGTAAGAGAA 59.490 40.741 6.18 0.00 0.00 2.87
1766 2148 8.855804 AAATGACCCTCCTATAGTAAGAGAAA 57.144 34.615 6.18 0.00 0.00 2.52
1767 2149 9.453830 AAATGACCCTCCTATAGTAAGAGAAAT 57.546 33.333 6.18 0.00 0.00 2.17
1768 2150 8.658840 ATGACCCTCCTATAGTAAGAGAAATC 57.341 38.462 6.18 2.69 0.00 2.17
1769 2151 7.592736 TGACCCTCCTATAGTAAGAGAAATCA 58.407 38.462 6.18 4.60 0.00 2.57
1770 2152 8.065627 TGACCCTCCTATAGTAAGAGAAATCAA 58.934 37.037 6.18 0.00 0.00 2.57
1771 2153 8.855804 ACCCTCCTATAGTAAGAGAAATCAAA 57.144 34.615 6.18 0.00 0.00 2.69
1772 2154 9.280456 ACCCTCCTATAGTAAGAGAAATCAAAA 57.720 33.333 6.18 0.00 0.00 2.44
1773 2155 9.549078 CCCTCCTATAGTAAGAGAAATCAAAAC 57.451 37.037 6.18 0.00 0.00 2.43
1779 2161 8.918202 ATAGTAAGAGAAATCAAAACACACCA 57.082 30.769 0.00 0.00 0.00 4.17
1780 2162 7.639113 AGTAAGAGAAATCAAAACACACCAA 57.361 32.000 0.00 0.00 0.00 3.67
1781 2163 8.062065 AGTAAGAGAAATCAAAACACACCAAA 57.938 30.769 0.00 0.00 0.00 3.28
1782 2164 8.190784 AGTAAGAGAAATCAAAACACACCAAAG 58.809 33.333 0.00 0.00 0.00 2.77
1783 2165 6.530019 AGAGAAATCAAAACACACCAAAGT 57.470 33.333 0.00 0.00 0.00 2.66
1784 2166 6.564328 AGAGAAATCAAAACACACCAAAGTC 58.436 36.000 0.00 0.00 0.00 3.01
1785 2167 6.378280 AGAGAAATCAAAACACACCAAAGTCT 59.622 34.615 0.00 0.00 0.00 3.24
1786 2168 6.564328 AGAAATCAAAACACACCAAAGTCTC 58.436 36.000 0.00 0.00 0.00 3.36
1787 2169 5.913137 AATCAAAACACACCAAAGTCTCA 57.087 34.783 0.00 0.00 0.00 3.27
1788 2170 6.469782 AATCAAAACACACCAAAGTCTCAT 57.530 33.333 0.00 0.00 0.00 2.90
1789 2171 5.913137 TCAAAACACACCAAAGTCTCATT 57.087 34.783 0.00 0.00 0.00 2.57
1790 2172 7.581213 ATCAAAACACACCAAAGTCTCATTA 57.419 32.000 0.00 0.00 0.00 1.90
1791 2173 6.791303 TCAAAACACACCAAAGTCTCATTAC 58.209 36.000 0.00 0.00 0.00 1.89
1792 2174 6.375736 TCAAAACACACCAAAGTCTCATTACA 59.624 34.615 0.00 0.00 0.00 2.41
1793 2175 6.959639 AAACACACCAAAGTCTCATTACAT 57.040 33.333 0.00 0.00 0.00 2.29
1794 2176 8.349245 CAAAACACACCAAAGTCTCATTACATA 58.651 33.333 0.00 0.00 0.00 2.29
1795 2177 7.672983 AACACACCAAAGTCTCATTACATAG 57.327 36.000 0.00 0.00 0.00 2.23
1796 2178 6.769512 ACACACCAAAGTCTCATTACATAGT 58.230 36.000 0.00 0.00 0.00 2.12
1797 2179 7.903145 ACACACCAAAGTCTCATTACATAGTA 58.097 34.615 0.00 0.00 0.00 1.82
1798 2180 8.540388 ACACACCAAAGTCTCATTACATAGTAT 58.460 33.333 0.00 0.00 0.00 2.12
1825 2207 6.428083 TGGAAGAGACACTAACATAAACCA 57.572 37.500 0.00 0.00 0.00 3.67
1826 2208 6.833041 TGGAAGAGACACTAACATAAACCAA 58.167 36.000 0.00 0.00 0.00 3.67
1827 2209 7.284074 TGGAAGAGACACTAACATAAACCAAA 58.716 34.615 0.00 0.00 0.00 3.28
1828 2210 7.776030 TGGAAGAGACACTAACATAAACCAAAA 59.224 33.333 0.00 0.00 0.00 2.44
1829 2211 8.626526 GGAAGAGACACTAACATAAACCAAAAA 58.373 33.333 0.00 0.00 0.00 1.94
1831 2213 9.965824 AAGAGACACTAACATAAACCAAAAATG 57.034 29.630 0.00 0.00 0.00 2.32
1832 2214 8.082242 AGAGACACTAACATAAACCAAAAATGC 58.918 33.333 0.00 0.00 0.00 3.56
1833 2215 7.951591 AGACACTAACATAAACCAAAAATGCT 58.048 30.769 0.00 0.00 0.00 3.79
1834 2216 8.421002 AGACACTAACATAAACCAAAAATGCTT 58.579 29.630 0.00 0.00 0.00 3.91
1835 2217 9.685828 GACACTAACATAAACCAAAAATGCTTA 57.314 29.630 0.00 0.00 0.00 3.09
1852 2234 8.430801 AAATGCTTATTATTTTGCGGCAATAA 57.569 26.923 17.19 13.15 32.05 1.40
1872 2262 0.101759 TACTTGGATGTAGACCGCGC 59.898 55.000 0.00 0.00 0.00 6.86
1894 2284 2.403252 AGACATTCCGACCATTGACC 57.597 50.000 0.00 0.00 0.00 4.02
1926 2316 9.301897 AGGCTTAAGTTCTCTGTTTTATTCATT 57.698 29.630 4.02 0.00 0.00 2.57
1990 2380 7.228507 TCAGTAAACTGCATCTACAATGTTTGT 59.771 33.333 5.21 0.00 44.10 2.83
1997 2387 8.076178 ACTGCATCTACAATGTTTGTTAGTTTC 58.924 33.333 0.00 0.00 42.22 2.78
1999 2389 7.860373 TGCATCTACAATGTTTGTTAGTTTCAC 59.140 33.333 0.00 0.00 42.22 3.18
2010 2400 2.356665 TAGTTTCACAAAGCTGGCCA 57.643 45.000 4.71 4.71 0.00 5.36
2022 2412 0.609131 GCTGGCCAGAAAGCACCTTA 60.609 55.000 37.21 0.00 39.31 2.69
2033 2423 6.238842 CCAGAAAGCACCTTACATGAATATGG 60.239 42.308 0.00 0.00 38.66 2.74
2034 2424 6.319658 CAGAAAGCACCTTACATGAATATGGT 59.680 38.462 0.00 0.00 38.66 3.55
2053 2451 5.186256 TGGTTGAACTTCTATTGCCCATA 57.814 39.130 0.00 0.00 0.00 2.74
2065 2463 9.107177 CTTCTATTGCCCATATAGCTCAAATAG 57.893 37.037 0.00 0.00 30.63 1.73
2099 2501 0.179009 ACATGTGCAGCTGTGAGGTT 60.179 50.000 16.64 0.00 0.00 3.50
2100 2502 0.240145 CATGTGCAGCTGTGAGGTTG 59.760 55.000 16.64 2.56 0.00 3.77
2101 2503 1.521450 ATGTGCAGCTGTGAGGTTGC 61.521 55.000 16.64 0.00 42.38 4.17
2102 2504 1.895707 GTGCAGCTGTGAGGTTGCT 60.896 57.895 16.64 0.00 42.48 3.91
2103 2505 1.152902 TGCAGCTGTGAGGTTGCTT 60.153 52.632 16.64 0.00 42.48 3.91
2104 2506 0.108396 TGCAGCTGTGAGGTTGCTTA 59.892 50.000 16.64 0.00 42.48 3.09
2116 2518 5.120830 GTGAGGTTGCTTAACTGTCACATAG 59.879 44.000 15.13 0.00 36.98 2.23
2120 2522 6.546034 AGGTTGCTTAACTGTCACATAGTTTT 59.454 34.615 0.00 0.00 39.06 2.43
2122 2524 6.223138 TGCTTAACTGTCACATAGTTTTCG 57.777 37.500 0.00 0.00 39.06 3.46
2129 2531 5.938125 ACTGTCACATAGTTTTCGCCTTAAT 59.062 36.000 0.00 0.00 0.00 1.40
2139 2541 6.346096 AGTTTTCGCCTTAATACATAGCTGA 58.654 36.000 0.00 0.00 0.00 4.26
2145 2547 6.423905 TCGCCTTAATACATAGCTGAACATTC 59.576 38.462 0.00 0.00 0.00 2.67
2146 2548 6.593978 GCCTTAATACATAGCTGAACATTCG 58.406 40.000 0.00 0.00 0.00 3.34
2159 2561 7.420800 AGCTGAACATTCGAATGAATATTTCC 58.579 34.615 37.75 19.93 42.94 3.13
2165 2567 6.980397 ACATTCGAATGAATATTTCCTTTGGC 59.020 34.615 37.75 0.00 42.94 4.52
2178 2580 2.503765 TCCTTTGGCGATTCCTGTGATA 59.496 45.455 0.00 0.00 35.26 2.15
2181 2583 3.627395 TTGGCGATTCCTGTGATAAGT 57.373 42.857 0.00 0.00 35.26 2.24
2189 2599 6.403636 GCGATTCCTGTGATAAGTCATTGTTT 60.404 38.462 0.00 0.00 36.60 2.83
2195 2605 7.604164 TCCTGTGATAAGTCATTGTTTCTCTTC 59.396 37.037 0.00 0.00 36.60 2.87
2212 2622 9.630098 GTTTCTCTTCAAGCATGATTTGATAAA 57.370 29.630 12.16 6.00 34.76 1.40
2233 2643 6.493189 AAAAATCATTGTAAACTGTGGGGT 57.507 33.333 0.00 0.00 0.00 4.95
2234 2644 5.722021 AAATCATTGTAAACTGTGGGGTC 57.278 39.130 0.00 0.00 0.00 4.46
2277 2687 7.553881 GCTTTTGCATAGTGGAGACTTTATA 57.446 36.000 0.00 0.00 46.58 0.98
2470 2881 2.602211 TGTTTTTGAACATTGTGCTGCG 59.398 40.909 0.00 0.00 0.00 5.18
2562 2977 5.483231 ACTCCTCTGAGACAAATTGAGATGA 59.517 40.000 6.17 0.00 41.42 2.92
2564 2979 6.404708 TCCTCTGAGACAAATTGAGATGAAG 58.595 40.000 6.17 0.00 0.00 3.02
2565 2980 6.013898 TCCTCTGAGACAAATTGAGATGAAGT 60.014 38.462 6.17 0.00 0.00 3.01
2566 2981 6.654161 CCTCTGAGACAAATTGAGATGAAGTT 59.346 38.462 6.17 0.00 0.00 2.66
2567 2982 7.174599 CCTCTGAGACAAATTGAGATGAAGTTT 59.825 37.037 6.17 0.00 0.00 2.66
2568 2983 7.868775 TCTGAGACAAATTGAGATGAAGTTTG 58.131 34.615 0.00 0.00 36.23 2.93
2569 2984 7.716560 TCTGAGACAAATTGAGATGAAGTTTGA 59.283 33.333 0.00 0.00 34.71 2.69
2570 2985 8.224389 TGAGACAAATTGAGATGAAGTTTGAA 57.776 30.769 0.00 0.00 34.71 2.69
2571 2986 8.853126 TGAGACAAATTGAGATGAAGTTTGAAT 58.147 29.630 0.00 0.00 34.71 2.57
2572 2987 9.125906 GAGACAAATTGAGATGAAGTTTGAATG 57.874 33.333 0.00 0.00 34.71 2.67
2573 2988 8.853126 AGACAAATTGAGATGAAGTTTGAATGA 58.147 29.630 0.00 0.00 34.71 2.57
2574 2989 9.467258 GACAAATTGAGATGAAGTTTGAATGAA 57.533 29.630 0.00 0.00 34.71 2.57
2575 2990 9.252962 ACAAATTGAGATGAAGTTTGAATGAAC 57.747 29.630 0.00 0.00 34.71 3.18
2576 2991 9.472361 CAAATTGAGATGAAGTTTGAATGAACT 57.528 29.630 0.00 0.00 41.44 3.01
2577 2992 9.472361 AAATTGAGATGAAGTTTGAATGAACTG 57.528 29.630 0.00 0.00 39.68 3.16
2578 2993 6.564709 TGAGATGAAGTTTGAATGAACTGG 57.435 37.500 0.00 0.00 39.68 4.00
2579 2994 5.474532 TGAGATGAAGTTTGAATGAACTGGG 59.525 40.000 0.00 0.00 39.68 4.45
2580 2995 5.634118 AGATGAAGTTTGAATGAACTGGGA 58.366 37.500 0.00 0.00 39.68 4.37
2581 2996 6.251471 AGATGAAGTTTGAATGAACTGGGAT 58.749 36.000 0.00 0.00 39.68 3.85
2582 2997 5.710513 TGAAGTTTGAATGAACTGGGATG 57.289 39.130 0.00 0.00 39.68 3.51
2583 2998 4.022068 TGAAGTTTGAATGAACTGGGATGC 60.022 41.667 0.00 0.00 39.68 3.91
2584 2999 3.499338 AGTTTGAATGAACTGGGATGCA 58.501 40.909 0.00 0.00 38.39 3.96
2585 3000 3.256631 AGTTTGAATGAACTGGGATGCAC 59.743 43.478 0.00 0.00 38.39 4.57
2586 3001 1.452110 TGAATGAACTGGGATGCACG 58.548 50.000 0.00 0.00 0.00 5.34
2587 3002 1.271325 TGAATGAACTGGGATGCACGT 60.271 47.619 0.00 0.00 0.00 4.49
2588 3003 1.131126 GAATGAACTGGGATGCACGTG 59.869 52.381 12.28 12.28 0.00 4.49
2602 3017 1.463444 GCACGTGGGAATAGTGTGTTC 59.537 52.381 18.88 0.00 38.10 3.18
2636 3051 9.138596 GCATAAATCACCCCTACCTAAATTTTA 57.861 33.333 0.00 0.00 0.00 1.52
2672 3087 2.558800 GGCCAAGGGTTAAAGGGAATGA 60.559 50.000 0.00 0.00 0.00 2.57
2702 3117 2.544694 CCATGGTTGCGCAACAAAGTTA 60.545 45.455 43.53 26.25 42.85 2.24
2707 3122 3.181575 GGTTGCGCAACAAAGTTATCAAC 59.818 43.478 43.53 24.02 42.85 3.18
2710 3130 2.724174 GCGCAACAAAGTTATCAACCAC 59.276 45.455 0.30 0.00 0.00 4.16
2716 3136 5.270893 ACAAAGTTATCAACCACCCAAAC 57.729 39.130 0.00 0.00 0.00 2.93
2746 3166 6.275335 CCAATAGTTTGGTGCTATCCAATTG 58.725 40.000 0.00 0.00 46.27 2.32
2749 3169 4.159557 AGTTTGGTGCTATCCAATTGGTT 58.840 39.130 23.76 17.99 45.30 3.67
2775 3195 1.067821 TGATTGGGGCACAAACGAAAC 59.932 47.619 6.13 0.00 43.46 2.78
2781 3201 0.171455 GGCACAAACGAAACACACCA 59.829 50.000 0.00 0.00 0.00 4.17
2782 3202 1.264672 GCACAAACGAAACACACCAC 58.735 50.000 0.00 0.00 0.00 4.16
2804 3224 6.308524 CCACAACATTAACATACATGTGCTTG 59.691 38.462 9.11 6.18 41.61 4.01
2808 3228 6.094719 ACATTAACATACATGTGCTTGCTTG 58.905 36.000 9.11 1.81 41.61 4.01
2812 3232 4.300803 ACATACATGTGCTTGCTTGTTTG 58.699 39.130 9.11 4.19 40.03 2.93
2834 3254 8.592155 GTTTGACCTTTTTGTCTTGTAATGAAC 58.408 33.333 0.00 0.00 36.21 3.18
2855 3275 8.621532 TGAACTTCTCTGCAAGTTTATGTTAT 57.378 30.769 3.15 0.00 44.91 1.89
2861 3281 9.502091 TTCTCTGCAAGTTTATGTTATGTACTT 57.498 29.630 0.00 0.00 33.76 2.24
2982 3403 8.848948 TGTGTGTCATTGTATTGTAGTTTTTG 57.151 30.769 0.00 0.00 0.00 2.44
2983 3404 7.918033 TGTGTGTCATTGTATTGTAGTTTTTGG 59.082 33.333 0.00 0.00 0.00 3.28
2985 3406 7.285629 TGTGTCATTGTATTGTAGTTTTTGGGA 59.714 33.333 0.00 0.00 0.00 4.37
2986 3407 8.138712 GTGTCATTGTATTGTAGTTTTTGGGAA 58.861 33.333 0.00 0.00 0.00 3.97
2987 3408 8.696374 TGTCATTGTATTGTAGTTTTTGGGAAA 58.304 29.630 0.00 0.00 0.00 3.13
2992 3413 9.892130 TTGTATTGTAGTTTTTGGGAAAATGTT 57.108 25.926 0.00 0.00 37.12 2.71
3032 3457 8.190888 AGAGATTCTGTTATTTTACTGCTTCG 57.809 34.615 0.00 0.00 0.00 3.79
3064 3489 2.571653 AGGATGGGAGAACGATGAAACA 59.428 45.455 0.00 0.00 0.00 2.83
3132 3557 8.604184 AGTTCGAGGAGATATAGTGGTAAGATA 58.396 37.037 0.00 0.00 0.00 1.98
3169 3594 8.309163 TGGTATTTTCAATTTTTCATGTCAGC 57.691 30.769 0.00 0.00 0.00 4.26
3170 3595 7.387397 TGGTATTTTCAATTTTTCATGTCAGCC 59.613 33.333 0.00 0.00 0.00 4.85
3185 3610 8.729805 TCATGTCAGCCTTTTATTTTTGTTTT 57.270 26.923 0.00 0.00 0.00 2.43
3233 3658 6.450545 TGTATGCTACAAGCTGAGACATATC 58.549 40.000 0.03 0.00 42.97 1.63
3235 3660 5.193663 TGCTACAAGCTGAGACATATCTC 57.806 43.478 0.00 0.00 44.49 2.75
3237 3662 6.159770 TGCTACAAGCTGAGACATATCTCCT 61.160 44.000 0.00 0.00 44.05 3.69
3239 3664 8.992457 TGCTACAAGCTGAGACATATCTCCTTT 61.992 40.741 0.00 0.00 44.05 3.11
3250 3675 9.823647 GAGACATATCTCCTTTTGACTAAATCA 57.176 33.333 0.00 0.00 45.06 2.57
3257 3682 7.453393 TCTCCTTTTGACTAAATCATGACAGT 58.547 34.615 0.00 1.40 37.11 3.55
3258 3683 7.388776 TCTCCTTTTGACTAAATCATGACAGTG 59.611 37.037 10.34 0.00 37.11 3.66
3260 3685 7.884877 TCCTTTTGACTAAATCATGACAGTGAT 59.115 33.333 10.34 0.00 40.44 3.06
3263 3688 8.853077 TTTGACTAAATCATGACAGTGATTCT 57.147 30.769 10.34 6.86 45.49 2.40
3264 3689 7.838771 TGACTAAATCATGACAGTGATTCTG 57.161 36.000 10.34 9.95 45.49 3.02
3265 3690 7.389232 TGACTAAATCATGACAGTGATTCTGT 58.611 34.615 10.34 0.00 45.49 3.41
3266 3691 8.531146 TGACTAAATCATGACAGTGATTCTGTA 58.469 33.333 10.34 3.73 45.49 2.74
3280 3705 9.282247 CAGTGATTCTGTATATTTTTGACTTGC 57.718 33.333 0.00 0.00 39.17 4.01
3281 3706 8.462016 AGTGATTCTGTATATTTTTGACTTGCC 58.538 33.333 0.00 0.00 0.00 4.52
3282 3707 8.243426 GTGATTCTGTATATTTTTGACTTGCCA 58.757 33.333 0.00 0.00 0.00 4.92
3283 3708 8.461222 TGATTCTGTATATTTTTGACTTGCCAG 58.539 33.333 0.00 0.00 0.00 4.85
3284 3709 7.759489 TTCTGTATATTTTTGACTTGCCAGT 57.241 32.000 0.00 0.00 35.17 4.00
3297 3722 3.441572 ACTTGCCAGTCAATATTCACTGC 59.558 43.478 13.58 9.77 39.03 4.40
3298 3723 2.009051 TGCCAGTCAATATTCACTGCG 58.991 47.619 13.58 8.41 39.03 5.18
3299 3724 2.279741 GCCAGTCAATATTCACTGCGA 58.720 47.619 13.58 0.00 39.03 5.10
3300 3725 2.286294 GCCAGTCAATATTCACTGCGAG 59.714 50.000 13.58 2.36 39.03 5.03
3301 3726 3.785486 CCAGTCAATATTCACTGCGAGA 58.215 45.455 13.58 0.00 39.03 4.04
3302 3727 4.375272 CCAGTCAATATTCACTGCGAGAT 58.625 43.478 13.58 0.00 39.03 2.75
3303 3728 4.813161 CCAGTCAATATTCACTGCGAGATT 59.187 41.667 13.58 0.00 39.03 2.40
3304 3729 5.295292 CCAGTCAATATTCACTGCGAGATTT 59.705 40.000 13.58 0.00 39.03 2.17
3305 3730 6.479990 CCAGTCAATATTCACTGCGAGATTTA 59.520 38.462 13.58 0.00 39.03 1.40
3306 3731 7.172190 CCAGTCAATATTCACTGCGAGATTTAT 59.828 37.037 13.58 0.00 39.03 1.40
3307 3732 8.219769 CAGTCAATATTCACTGCGAGATTTATC 58.780 37.037 6.54 0.00 33.96 1.75
3308 3733 7.386299 AGTCAATATTCACTGCGAGATTTATCC 59.614 37.037 0.00 0.00 0.00 2.59
3309 3734 7.171508 GTCAATATTCACTGCGAGATTTATCCA 59.828 37.037 0.00 0.00 0.00 3.41
3310 3735 7.879677 TCAATATTCACTGCGAGATTTATCCAT 59.120 33.333 0.00 0.00 0.00 3.41
3311 3736 8.509690 CAATATTCACTGCGAGATTTATCCATT 58.490 33.333 0.00 0.00 0.00 3.16
3312 3737 6.949352 ATTCACTGCGAGATTTATCCATTT 57.051 33.333 0.00 0.00 0.00 2.32
3313 3738 6.757897 TTCACTGCGAGATTTATCCATTTT 57.242 33.333 0.00 0.00 0.00 1.82
3314 3739 6.122850 TCACTGCGAGATTTATCCATTTTG 57.877 37.500 0.00 0.00 0.00 2.44
3315 3740 5.879777 TCACTGCGAGATTTATCCATTTTGA 59.120 36.000 0.00 0.00 0.00 2.69
3316 3741 5.967674 CACTGCGAGATTTATCCATTTTGAC 59.032 40.000 0.00 0.00 0.00 3.18
3317 3742 5.647658 ACTGCGAGATTTATCCATTTTGACA 59.352 36.000 0.00 0.00 0.00 3.58
3318 3743 6.319658 ACTGCGAGATTTATCCATTTTGACAT 59.680 34.615 0.00 0.00 0.00 3.06
3319 3744 6.728200 TGCGAGATTTATCCATTTTGACATC 58.272 36.000 0.00 0.00 0.00 3.06
3320 3745 6.318396 TGCGAGATTTATCCATTTTGACATCA 59.682 34.615 0.00 0.00 0.00 3.07
3321 3746 7.013559 TGCGAGATTTATCCATTTTGACATCAT 59.986 33.333 0.00 0.00 0.00 2.45
3322 3747 7.325338 GCGAGATTTATCCATTTTGACATCATG 59.675 37.037 0.00 0.00 0.00 3.07
3323 3748 7.325338 CGAGATTTATCCATTTTGACATCATGC 59.675 37.037 0.00 0.00 0.00 4.06
3324 3749 8.014070 AGATTTATCCATTTTGACATCATGCA 57.986 30.769 0.00 0.00 0.00 3.96
3325 3750 8.647796 AGATTTATCCATTTTGACATCATGCAT 58.352 29.630 0.00 0.00 0.00 3.96
3326 3751 9.917129 GATTTATCCATTTTGACATCATGCATA 57.083 29.630 0.00 0.00 0.00 3.14
3357 3782 7.801716 TTTTGTCTGATTGTACTAAACTGCT 57.198 32.000 0.00 0.00 0.00 4.24
3358 3783 6.785488 TTGTCTGATTGTACTAAACTGCTG 57.215 37.500 0.00 0.00 0.00 4.41
3359 3784 4.690748 TGTCTGATTGTACTAAACTGCTGC 59.309 41.667 0.00 0.00 0.00 5.25
3361 3786 6.100004 GTCTGATTGTACTAAACTGCTGCTA 58.900 40.000 0.00 0.00 0.00 3.49
3362 3787 6.035112 GTCTGATTGTACTAAACTGCTGCTAC 59.965 42.308 0.00 0.00 0.00 3.58
3363 3788 6.037786 TGATTGTACTAAACTGCTGCTACT 57.962 37.500 0.00 0.00 0.00 2.57
3364 3789 7.122204 TCTGATTGTACTAAACTGCTGCTACTA 59.878 37.037 0.00 0.00 0.00 1.82
3377 3802 7.319646 ACTGCTGCTACTATAGAATAATCAGC 58.680 38.462 6.78 14.50 43.15 4.26
3378 3803 7.178274 ACTGCTGCTACTATAGAATAATCAGCT 59.822 37.037 21.60 0.00 43.22 4.24
3380 3805 9.025041 TGCTGCTACTATAGAATAATCAGCTTA 57.975 33.333 21.60 10.11 43.22 3.09
3404 3829 2.574006 TGAGCTTTTGAGGTCATGCT 57.426 45.000 4.36 0.00 40.79 3.79
3440 3866 7.350382 TCTCCTCTGTAATGAGTCATTCTAGT 58.650 38.462 21.49 0.34 35.54 2.57
3442 3868 7.776107 TCCTCTGTAATGAGTCATTCTAGTTG 58.224 38.462 21.49 15.45 35.54 3.16
3518 3944 3.548415 GGACCTGAAAGCTATCTCGTACG 60.548 52.174 9.53 9.53 0.00 3.67
3575 4004 9.835389 AAAACCCATCAAATTTCATGTATATGG 57.165 29.630 1.17 0.00 34.97 2.74
3594 4024 3.462021 TGGGAATTTTTCTTGGTTTGCG 58.538 40.909 0.00 0.00 0.00 4.85
3622 4052 0.987294 AACCACAGCATACCTGAGCT 59.013 50.000 0.00 0.00 44.64 4.09
3628 4058 1.577736 AGCATACCTGAGCTGAGGTT 58.422 50.000 30.47 14.89 44.53 3.50
3629 4059 1.484240 AGCATACCTGAGCTGAGGTTC 59.516 52.381 30.47 18.46 44.53 3.62
3630 4060 1.208052 GCATACCTGAGCTGAGGTTCA 59.792 52.381 30.47 14.01 44.53 3.18
3631 4061 2.898705 CATACCTGAGCTGAGGTTCAC 58.101 52.381 30.47 0.00 44.53 3.18
3632 4062 2.009681 TACCTGAGCTGAGGTTCACA 57.990 50.000 30.47 9.51 44.53 3.58
3633 4063 0.394565 ACCTGAGCTGAGGTTCACAC 59.605 55.000 20.33 0.00 44.53 3.82
3635 4065 1.337635 CCTGAGCTGAGGTTCACACTC 60.338 57.143 11.67 0.00 35.55 3.51
3636 4066 0.315251 TGAGCTGAGGTTCACACTCG 59.685 55.000 0.00 0.00 37.79 4.18
3638 4068 1.300931 GCTGAGGTTCACACTCGCA 60.301 57.895 0.00 0.00 37.79 5.10
3639 4069 0.671781 GCTGAGGTTCACACTCGCAT 60.672 55.000 0.00 0.00 37.79 4.73
3640 4070 1.073964 CTGAGGTTCACACTCGCATG 58.926 55.000 0.00 0.00 37.79 4.06
3641 4071 0.678950 TGAGGTTCACACTCGCATGA 59.321 50.000 0.00 0.00 37.79 3.07
3642 4072 1.276138 TGAGGTTCACACTCGCATGAT 59.724 47.619 0.00 0.00 37.79 2.45
3643 4073 1.929836 GAGGTTCACACTCGCATGATC 59.070 52.381 0.00 0.00 0.00 2.92
3644 4074 1.552337 AGGTTCACACTCGCATGATCT 59.448 47.619 0.00 0.00 0.00 2.75
3645 4075 2.027745 AGGTTCACACTCGCATGATCTT 60.028 45.455 0.00 0.00 0.00 2.40
3646 4076 3.195610 AGGTTCACACTCGCATGATCTTA 59.804 43.478 0.00 0.00 0.00 2.10
3647 4077 4.122776 GGTTCACACTCGCATGATCTTAT 58.877 43.478 0.00 0.00 0.00 1.73
3648 4078 4.572389 GGTTCACACTCGCATGATCTTATT 59.428 41.667 0.00 0.00 0.00 1.40
3649 4079 5.753438 GGTTCACACTCGCATGATCTTATTA 59.247 40.000 0.00 0.00 0.00 0.98
3650 4080 6.257849 GGTTCACACTCGCATGATCTTATTAA 59.742 38.462 0.00 0.00 0.00 1.40
3651 4081 7.340699 GTTCACACTCGCATGATCTTATTAAG 58.659 38.462 0.00 0.00 0.00 1.85
3652 4082 5.985530 TCACACTCGCATGATCTTATTAAGG 59.014 40.000 0.00 0.00 0.00 2.69
3653 4083 5.178252 CACACTCGCATGATCTTATTAAGGG 59.822 44.000 0.00 0.00 0.00 3.95
3654 4084 4.153117 CACTCGCATGATCTTATTAAGGGC 59.847 45.833 0.00 0.00 0.00 5.19
3655 4085 4.202357 ACTCGCATGATCTTATTAAGGGCA 60.202 41.667 0.00 3.26 0.00 5.36
3656 4086 4.910195 TCGCATGATCTTATTAAGGGCAT 58.090 39.130 0.00 5.21 0.00 4.40
3657 4087 4.937620 TCGCATGATCTTATTAAGGGCATC 59.062 41.667 0.00 1.16 0.00 3.91
3658 4088 4.940046 CGCATGATCTTATTAAGGGCATCT 59.060 41.667 0.00 0.00 0.00 2.90
3659 4089 5.413833 CGCATGATCTTATTAAGGGCATCTT 59.586 40.000 0.00 0.00 39.40 2.40
3660 4090 6.402983 CGCATGATCTTATTAAGGGCATCTTC 60.403 42.308 0.00 0.83 36.93 2.87
3690 4120 7.870509 TTATTGTATACCGTACTCACAGACT 57.129 36.000 0.00 0.00 0.00 3.24
3692 4122 9.565090 TTATTGTATACCGTACTCACAGACTAT 57.435 33.333 0.00 0.00 0.00 2.12
3694 4124 8.599055 TTGTATACCGTACTCACAGACTATAG 57.401 38.462 0.00 0.00 0.00 1.31
3697 4127 5.356291 ACCGTACTCACAGACTATAGACT 57.644 43.478 6.78 2.28 0.00 3.24
3698 4128 5.358922 ACCGTACTCACAGACTATAGACTC 58.641 45.833 6.78 0.00 0.00 3.36
3726 4157 9.062367 AGTAATATCCTAGATGCATGGGTTAAT 57.938 33.333 2.46 0.00 0.00 1.40
3727 4158 9.113838 GTAATATCCTAGATGCATGGGTTAATG 57.886 37.037 2.46 0.00 0.00 1.90
3735 4166 1.184431 CATGGGTTAATGCTGTGCCA 58.816 50.000 0.00 0.00 0.00 4.92
3736 4167 1.135527 CATGGGTTAATGCTGTGCCAG 59.864 52.381 0.00 0.00 34.12 4.85
3750 4181 2.273123 CCAGCAGCCCAGCATGTA 59.727 61.111 0.00 0.00 36.85 2.29
3751 4182 1.152819 CCAGCAGCCCAGCATGTAT 60.153 57.895 0.00 0.00 36.85 2.29
3752 4183 1.452953 CCAGCAGCCCAGCATGTATG 61.453 60.000 0.00 0.00 36.85 2.39
3753 4184 0.464916 CAGCAGCCCAGCATGTATGA 60.465 55.000 0.00 0.00 36.85 2.15
3754 4185 0.477204 AGCAGCCCAGCATGTATGAT 59.523 50.000 0.00 0.00 36.85 2.45
3755 4186 0.596577 GCAGCCCAGCATGTATGATG 59.403 55.000 3.25 3.25 43.38 3.07
3756 4187 0.596577 CAGCCCAGCATGTATGATGC 59.403 55.000 4.66 0.00 42.48 3.91
3757 4188 0.538977 AGCCCAGCATGTATGATGCC 60.539 55.000 4.66 0.00 45.59 4.40
3758 4189 0.538977 GCCCAGCATGTATGATGCCT 60.539 55.000 4.66 0.00 45.59 4.75
3759 4190 1.991121 CCCAGCATGTATGATGCCTT 58.009 50.000 4.66 0.00 45.59 4.35
3760 4191 2.313317 CCCAGCATGTATGATGCCTTT 58.687 47.619 4.66 0.00 45.59 3.11
3761 4192 2.035449 CCCAGCATGTATGATGCCTTTG 59.965 50.000 4.66 1.64 45.59 2.77
3762 4193 2.545113 CCAGCATGTATGATGCCTTTGC 60.545 50.000 4.66 0.00 45.59 3.68
3776 4207 2.780149 CTTTGCAACCGCGGTACAGC 62.780 60.000 34.44 32.52 42.97 4.40
3789 4220 2.159707 CGGTACAGCTGAAAAATCACCG 60.160 50.000 23.35 20.02 41.32 4.94
3793 4224 0.883833 AGCTGAAAAATCACCGGCTG 59.116 50.000 0.00 0.00 40.65 4.85
3799 4230 3.118956 TGAAAAATCACCGGCTGTTTGTT 60.119 39.130 0.00 2.29 0.00 2.83
3825 4259 2.223537 CATACTGGATGTGCAGCGTA 57.776 50.000 1.14 0.00 0.00 4.42
3828 4262 0.034756 ACTGGATGTGCAGCGTACAA 59.965 50.000 1.14 0.00 0.00 2.41
3831 4265 1.156736 GGATGTGCAGCGTACAACTT 58.843 50.000 3.99 0.00 0.00 2.66
3877 4315 3.362040 TGCAAGCAGGGCATACTTT 57.638 47.368 0.00 0.00 36.11 2.66
3878 4316 0.889994 TGCAAGCAGGGCATACTTTG 59.110 50.000 0.00 0.00 36.11 2.77
3893 4331 7.040961 GGGCATACTTTGTTAGTTCACACTTTA 60.041 37.037 0.00 0.00 38.33 1.85
3894 4332 8.015658 GGCATACTTTGTTAGTTCACACTTTAG 58.984 37.037 0.00 0.00 38.33 1.85
3898 4336 6.257193 ACTTTGTTAGTTCACACTTTAGTCGG 59.743 38.462 0.00 0.00 31.29 4.79
3899 4337 5.266733 TGTTAGTTCACACTTTAGTCGGT 57.733 39.130 0.00 0.00 34.06 4.69
3900 4338 5.045215 TGTTAGTTCACACTTTAGTCGGTG 58.955 41.667 0.00 0.00 39.13 4.94
3901 4339 3.107642 AGTTCACACTTTAGTCGGTGG 57.892 47.619 0.00 0.00 37.72 4.61
3922 4426 1.372683 GGAGTCACTTCAGCTGCCA 59.627 57.895 9.47 0.00 0.00 4.92
3935 4439 3.138304 CAGCTGCCACAACTTTGTACTA 58.862 45.455 0.00 0.00 39.91 1.82
3937 4441 3.815401 AGCTGCCACAACTTTGTACTAAG 59.185 43.478 14.42 14.42 39.91 2.18
3938 4442 3.058224 GCTGCCACAACTTTGTACTAAGG 60.058 47.826 19.08 6.84 39.91 2.69
3944 4451 2.094762 ACTTTGTACTAAGGCCAGCG 57.905 50.000 19.08 0.00 0.00 5.18
3946 4453 2.564062 ACTTTGTACTAAGGCCAGCGTA 59.436 45.455 19.08 0.00 0.00 4.42
3983 4491 7.367285 TGAAGGTTGTAATTAACATTGACTGC 58.633 34.615 0.00 0.00 38.10 4.40
3986 4494 5.572896 GGTTGTAATTAACATTGACTGCAGC 59.427 40.000 15.27 7.45 38.10 5.25
3987 4495 5.309323 TGTAATTAACATTGACTGCAGCC 57.691 39.130 15.27 2.30 31.43 4.85
4013 4521 1.869767 GCTCCTGTGACAAACTGACAG 59.130 52.381 0.00 0.00 37.45 3.51
4029 4537 4.067896 CTGACAGTTTCTACTTGTGCCAT 58.932 43.478 0.00 0.00 30.26 4.40
4030 4538 3.814842 TGACAGTTTCTACTTGTGCCATG 59.185 43.478 0.00 0.00 30.26 3.66
4031 4539 2.554032 ACAGTTTCTACTTGTGCCATGC 59.446 45.455 0.00 0.00 30.26 4.06
4032 4540 2.816087 CAGTTTCTACTTGTGCCATGCT 59.184 45.455 0.00 0.00 30.26 3.79
4033 4541 2.816087 AGTTTCTACTTGTGCCATGCTG 59.184 45.455 0.00 0.00 0.00 4.41
4034 4542 2.813754 GTTTCTACTTGTGCCATGCTGA 59.186 45.455 0.00 0.00 0.00 4.26
4035 4543 2.857186 TCTACTTGTGCCATGCTGAA 57.143 45.000 0.00 0.00 0.00 3.02
4036 4544 3.354948 TCTACTTGTGCCATGCTGAAT 57.645 42.857 0.00 0.00 0.00 2.57
4037 4545 3.011818 TCTACTTGTGCCATGCTGAATG 58.988 45.455 0.00 0.00 35.89 2.67
4038 4546 1.624336 ACTTGTGCCATGCTGAATGT 58.376 45.000 0.00 0.00 34.11 2.71
4039 4547 1.965643 ACTTGTGCCATGCTGAATGTT 59.034 42.857 0.00 0.00 34.11 2.71
4040 4548 2.366266 ACTTGTGCCATGCTGAATGTTT 59.634 40.909 0.00 0.00 34.11 2.83
4041 4549 2.442212 TGTGCCATGCTGAATGTTTG 57.558 45.000 0.00 0.00 34.11 2.93
4042 4550 1.687660 TGTGCCATGCTGAATGTTTGT 59.312 42.857 0.00 0.00 34.11 2.83
4043 4551 2.063266 GTGCCATGCTGAATGTTTGTG 58.937 47.619 0.00 0.00 34.11 3.33
4044 4552 1.687660 TGCCATGCTGAATGTTTGTGT 59.312 42.857 0.00 0.00 34.11 3.72
4045 4553 2.889678 TGCCATGCTGAATGTTTGTGTA 59.110 40.909 0.00 0.00 34.11 2.90
4046 4554 3.057386 TGCCATGCTGAATGTTTGTGTAG 60.057 43.478 0.00 0.00 34.11 2.74
4103 4639 6.824305 ACTAAACCTGTTTCCATCTTCATG 57.176 37.500 0.00 0.00 34.23 3.07
4104 4640 4.525912 AAACCTGTTTCCATCTTCATGC 57.474 40.909 0.00 0.00 0.00 4.06
4105 4641 2.086869 ACCTGTTTCCATCTTCATGCG 58.913 47.619 0.00 0.00 0.00 4.73
4107 4643 2.159476 CCTGTTTCCATCTTCATGCGTG 60.159 50.000 0.00 0.00 0.00 5.34
4108 4644 2.485426 CTGTTTCCATCTTCATGCGTGT 59.515 45.455 5.68 0.00 0.00 4.49
4110 4646 4.068599 TGTTTCCATCTTCATGCGTGTTA 58.931 39.130 5.68 0.00 0.00 2.41
4111 4647 4.154015 TGTTTCCATCTTCATGCGTGTTAG 59.846 41.667 5.68 5.24 0.00 2.34
4112 4648 3.885724 TCCATCTTCATGCGTGTTAGA 57.114 42.857 5.68 10.40 0.00 2.10
4551 5137 3.392616 TCTCACTTTCCTTTGCCTTCTCT 59.607 43.478 0.00 0.00 0.00 3.10
4552 5138 4.593206 TCTCACTTTCCTTTGCCTTCTCTA 59.407 41.667 0.00 0.00 0.00 2.43
4558 5147 4.392921 TCCTTTGCCTTCTCTATTCTCG 57.607 45.455 0.00 0.00 0.00 4.04
4730 5319 0.603569 AAGTGTCTGATTCTCGCGGT 59.396 50.000 6.13 0.00 0.00 5.68
4749 5338 6.314152 TCGCGGTGTCATATTATTTCTCAAAA 59.686 34.615 6.13 0.00 0.00 2.44
4777 5366 4.628766 GCTTGATTTTGATTTCTTGCTCCC 59.371 41.667 0.00 0.00 0.00 4.30
4826 5415 6.816640 TGTATTTTACCAGACCTGAAATCGAG 59.183 38.462 0.00 0.00 0.00 4.04
4929 5522 4.511826 GCTGGAAGTATATAACACACTGGC 59.488 45.833 0.00 0.00 35.30 4.85
4958 5601 9.462174 CATGAAGTGATGAGTAGTCTTATCTTC 57.538 37.037 15.44 15.44 37.51 2.87
5025 5668 4.609691 AAAAACATCGATACGGCGAATT 57.390 36.364 16.62 0.00 44.22 2.17
5026 5669 3.585748 AAACATCGATACGGCGAATTG 57.414 42.857 16.62 4.72 44.22 2.32
5027 5670 2.502213 ACATCGATACGGCGAATTGA 57.498 45.000 16.62 6.50 44.22 2.57
5135 5778 2.530491 ACCCCTTCGGTGTTGTACA 58.470 52.632 0.00 0.00 46.09 2.90
5136 5779 1.061546 ACCCCTTCGGTGTTGTACAT 58.938 50.000 0.00 0.00 46.09 2.29
5143 5786 5.588648 CCCTTCGGTGTTGTACATGATATTT 59.411 40.000 0.00 0.00 0.00 1.40
5150 5793 8.020819 CGGTGTTGTACATGATATTTCAAACTT 58.979 33.333 0.00 0.00 34.96 2.66
5166 5809 9.941325 ATTTCAAACTTATTATTGCATGTCCAA 57.059 25.926 0.00 0.00 0.00 3.53
5167 5810 9.941325 TTTCAAACTTATTATTGCATGTCCAAT 57.059 25.926 0.00 0.00 38.80 3.16
5168 5811 8.929827 TCAAACTTATTATTGCATGTCCAATG 57.070 30.769 8.36 0.00 36.21 2.82
5169 5812 8.530311 TCAAACTTATTATTGCATGTCCAATGT 58.470 29.630 8.36 1.76 36.21 2.71
5175 5818 6.573664 TTATTGCATGTCCAATGTATAGGC 57.426 37.500 8.36 0.00 36.21 3.93
5177 5820 4.972751 TGCATGTCCAATGTATAGGCTA 57.027 40.909 0.00 0.00 0.00 3.93
5179 5822 5.879763 TGCATGTCCAATGTATAGGCTATT 58.120 37.500 13.08 0.00 0.00 1.73
5181 5824 6.430925 TGCATGTCCAATGTATAGGCTATTTC 59.569 38.462 13.08 7.32 0.00 2.17
5182 5825 6.430925 GCATGTCCAATGTATAGGCTATTTCA 59.569 38.462 13.08 12.53 0.00 2.69
5184 5827 9.017509 CATGTCCAATGTATAGGCTATTTCAAT 57.982 33.333 13.08 3.57 0.00 2.57
5186 5829 9.420118 TGTCCAATGTATAGGCTATTTCAATTT 57.580 29.630 13.08 3.09 0.00 1.82
5238 5915 9.948964 TCAATATGATTCGTATTGGATCAAGAT 57.051 29.630 26.92 0.10 41.20 2.40
5248 5925 9.807649 TCGTATTGGATCAAGATATCATACATG 57.192 33.333 5.32 0.00 0.00 3.21
5291 5968 7.542130 GCCTAACTGAACATAAAAATGAACCTG 59.458 37.037 0.00 0.00 0.00 4.00
5306 5983 7.921041 AATGAACCTGAACATAGAGGAGATA 57.079 36.000 0.00 0.00 33.16 1.98
5307 5984 8.503428 AATGAACCTGAACATAGAGGAGATAT 57.497 34.615 0.00 0.00 33.16 1.63
5308 5985 9.607333 AATGAACCTGAACATAGAGGAGATATA 57.393 33.333 0.00 0.00 33.16 0.86
5310 5987 8.861086 TGAACCTGAACATAGAGGAGATATAAC 58.139 37.037 0.00 0.00 33.16 1.89
5312 5989 6.434652 ACCTGAACATAGAGGAGATATAACCG 59.565 42.308 0.00 0.00 33.16 4.44
5313 5990 6.659668 CCTGAACATAGAGGAGATATAACCGA 59.340 42.308 0.00 0.00 0.00 4.69
5314 5991 7.148154 CCTGAACATAGAGGAGATATAACCGAG 60.148 44.444 0.00 0.00 0.00 4.63
5315 5992 7.232188 TGAACATAGAGGAGATATAACCGAGT 58.768 38.462 0.00 0.00 0.00 4.18
5317 5994 5.875910 ACATAGAGGAGATATAACCGAGTCG 59.124 44.000 5.29 5.29 0.00 4.18
5334 6060 1.646912 TCGGAAGACAATGGGGTGTA 58.353 50.000 0.00 0.00 33.31 2.90
5422 6148 9.955208 TGTGTATTATACATAAGTAGTCAACGG 57.045 33.333 8.39 0.00 41.34 4.44
5488 6214 0.613572 TGGCTCCGACCATGTCAGTA 60.614 55.000 0.00 0.00 33.75 2.74
5492 6218 2.159099 GCTCCGACCATGTCAGTAATGA 60.159 50.000 0.00 0.00 32.09 2.57
5494 6220 4.262036 GCTCCGACCATGTCAGTAATGATA 60.262 45.833 0.00 0.00 32.09 2.15
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
14 15 2.202987 GGCCACGCATCCTCTCTG 60.203 66.667 0.00 0.00 0.00 3.35
15 16 1.630126 AATGGCCACGCATCCTCTCT 61.630 55.000 8.16 0.00 0.00 3.10
26 27 7.172361 TGCTTTCTTAACAAAATTAATGGCCAC 59.828 33.333 8.16 0.00 0.00 5.01
69 70 7.234384 CCGACTACTTACAAACTTTTGCATAG 58.766 38.462 1.49 0.00 41.79 2.23
70 71 6.148150 CCCGACTACTTACAAACTTTTGCATA 59.852 38.462 1.49 0.00 41.79 3.14
72 73 4.273969 CCCGACTACTTACAAACTTTTGCA 59.726 41.667 1.49 0.00 41.79 4.08
73 74 4.512571 TCCCGACTACTTACAAACTTTTGC 59.487 41.667 1.49 0.00 41.79 3.68
74 75 6.607735 TTCCCGACTACTTACAAACTTTTG 57.392 37.500 0.00 0.00 43.62 2.44
82 86 6.855763 TTAGGAATTTCCCGACTACTTACA 57.144 37.500 11.92 0.00 37.19 2.41
91 95 8.817092 AGTTCATAATTTTAGGAATTTCCCGA 57.183 30.769 11.92 0.00 37.19 5.14
126 139 2.185387 GGGGCAGAGTCAGGTTAACTA 58.815 52.381 5.42 0.00 0.00 2.24
141 158 1.771646 GAAAGGTTGGGTAGGGGCA 59.228 57.895 0.00 0.00 0.00 5.36
145 162 1.003233 AGCTTCGAAAGGTTGGGTAGG 59.997 52.381 0.00 0.00 35.27 3.18
170 191 1.118356 AAAAGGGTTGGCCGCAATGA 61.118 50.000 0.00 0.00 34.97 2.57
214 239 4.017958 TGTTATCCCTTGCTAATGGAACCA 60.018 41.667 0.00 0.00 0.00 3.67
225 250 4.864704 TTCCTGTTTTGTTATCCCTTGC 57.135 40.909 0.00 0.00 0.00 4.01
255 282 0.174845 TGCAAATAGGGTCGGACGAG 59.825 55.000 1.43 0.00 0.00 4.18
256 283 0.828022 ATGCAAATAGGGTCGGACGA 59.172 50.000 1.43 0.00 0.00 4.20
282 309 8.232513 CGTGAGTAAATTAGGGGTTTACTTTTC 58.767 37.037 11.28 2.64 46.68 2.29
334 361 2.081462 GGTGTACAGTTGTATGGGTGC 58.919 52.381 0.00 0.00 32.54 5.01
370 397 9.070149 CACATGTTTTGTTTTATTTTGGTTTGG 57.930 29.630 0.00 0.00 36.00 3.28
373 400 8.672815 CCTCACATGTTTTGTTTTATTTTGGTT 58.327 29.630 0.00 0.00 36.00 3.67
374 401 7.201688 GCCTCACATGTTTTGTTTTATTTTGGT 60.202 33.333 0.00 0.00 36.00 3.67
375 402 7.131565 GCCTCACATGTTTTGTTTTATTTTGG 58.868 34.615 0.00 0.00 36.00 3.28
376 403 7.692088 TGCCTCACATGTTTTGTTTTATTTTG 58.308 30.769 0.00 0.00 36.00 2.44
377 404 7.856145 TGCCTCACATGTTTTGTTTTATTTT 57.144 28.000 0.00 0.00 36.00 1.82
378 405 7.552330 ACTTGCCTCACATGTTTTGTTTTATTT 59.448 29.630 0.00 0.00 36.00 1.40
379 406 7.047271 ACTTGCCTCACATGTTTTGTTTTATT 58.953 30.769 0.00 0.00 36.00 1.40
380 407 6.581712 ACTTGCCTCACATGTTTTGTTTTAT 58.418 32.000 0.00 0.00 36.00 1.40
381 408 5.971763 ACTTGCCTCACATGTTTTGTTTTA 58.028 33.333 0.00 0.00 36.00 1.52
407 434 1.078709 CGCATGTGTCGATCAAGGTT 58.921 50.000 0.00 0.00 0.00 3.50
412 439 0.796870 GACGTCGCATGTGTCGATCA 60.797 55.000 27.89 0.00 38.29 2.92
519 546 6.887626 TGTTTTTATTCTGACCTTGTACCC 57.112 37.500 0.00 0.00 0.00 3.69
603 636 5.362717 TGGGTTTCTTCTCCTTTTCTTTTCC 59.637 40.000 0.00 0.00 0.00 3.13
765 813 1.608336 CCCGGTTTCCTTTTCCCCC 60.608 63.158 0.00 0.00 0.00 5.40
1110 1468 6.473397 GGATACTAAAAGCATCAGGATTCG 57.527 41.667 0.00 0.00 0.00 3.34
1130 1488 5.846714 CCCCCAATCTAATCGGATATAGGAT 59.153 44.000 0.00 0.00 0.00 3.24
1211 1573 0.244450 AAACCAATGCCAGCATCACG 59.756 50.000 5.44 0.00 35.31 4.35
1299 1662 1.080974 GCATGACCACAAGCAGCAC 60.081 57.895 0.00 0.00 39.97 4.40
1398 1765 6.757010 GGTAATATTTGTCGCTATCATCGGAT 59.243 38.462 0.00 0.00 37.55 4.18
1400 1767 5.004440 CGGTAATATTTGTCGCTATCATCGG 59.996 44.000 0.00 0.00 0.00 4.18
1605 1987 5.920273 ACCAGAAAATTGCAATGTAAAGTCG 59.080 36.000 13.82 0.00 0.00 4.18
1621 2003 4.531854 TGGAAGACATGTTCACCAGAAAA 58.468 39.130 0.00 0.00 35.08 2.29
1628 2010 4.130118 ACTGAGTTGGAAGACATGTTCAC 58.870 43.478 0.00 0.00 0.00 3.18
1631 2013 4.697352 GCATACTGAGTTGGAAGACATGTT 59.303 41.667 0.00 0.00 0.00 2.71
1637 2019 3.258372 ACTTCGCATACTGAGTTGGAAGA 59.742 43.478 19.41 4.39 34.88 2.87
1641 2023 3.498397 ACAAACTTCGCATACTGAGTTGG 59.502 43.478 0.00 0.00 0.00 3.77
1649 2031 7.406553 TGCTATTCATTACAAACTTCGCATAC 58.593 34.615 0.00 0.00 0.00 2.39
1666 2048 3.619419 TGCCAGTTATTGCTGCTATTCA 58.381 40.909 1.26 0.00 35.28 2.57
1672 2054 2.019249 TCAGATGCCAGTTATTGCTGC 58.981 47.619 0.00 0.00 35.28 5.25
1696 2078 7.415541 CCCACATGACATACCATAAAACTTCAG 60.416 40.741 0.00 0.00 0.00 3.02
1716 2098 6.215431 TCCTATATAAGCTTACATGCCCACAT 59.785 38.462 8.70 0.00 36.79 3.21
1717 2099 5.546110 TCCTATATAAGCTTACATGCCCACA 59.454 40.000 8.70 0.00 0.00 4.17
1718 2100 6.049955 TCCTATATAAGCTTACATGCCCAC 57.950 41.667 8.70 0.00 0.00 4.61
1719 2101 6.696042 TTCCTATATAAGCTTACATGCCCA 57.304 37.500 8.70 0.00 0.00 5.36
1720 2102 7.829211 TCATTTCCTATATAAGCTTACATGCCC 59.171 37.037 8.70 0.00 0.00 5.36
1721 2103 8.669243 GTCATTTCCTATATAAGCTTACATGCC 58.331 37.037 8.70 0.00 0.00 4.40
1722 2104 8.669243 GGTCATTTCCTATATAAGCTTACATGC 58.331 37.037 8.70 0.00 0.00 4.06
1723 2105 9.167311 GGGTCATTTCCTATATAAGCTTACATG 57.833 37.037 8.70 0.00 0.00 3.21
1724 2106 9.117223 AGGGTCATTTCCTATATAAGCTTACAT 57.883 33.333 8.70 5.25 31.86 2.29
1725 2107 8.506196 AGGGTCATTTCCTATATAAGCTTACA 57.494 34.615 8.70 0.00 31.86 2.41
1726 2108 8.041919 GGAGGGTCATTTCCTATATAAGCTTAC 58.958 40.741 8.70 0.00 34.21 2.34
1727 2109 7.962003 AGGAGGGTCATTTCCTATATAAGCTTA 59.038 37.037 8.99 8.99 41.97 3.09
1728 2110 6.795000 AGGAGGGTCATTTCCTATATAAGCTT 59.205 38.462 3.48 3.48 41.97 3.74
1729 2111 6.335115 AGGAGGGTCATTTCCTATATAAGCT 58.665 40.000 0.00 0.00 41.97 3.74
1730 2112 6.628644 AGGAGGGTCATTTCCTATATAAGC 57.371 41.667 0.00 0.00 41.97 3.09
1737 2119 8.065385 TCTTACTATAGGAGGGTCATTTCCTA 57.935 38.462 4.43 2.98 46.94 2.94
1738 2120 6.935036 TCTTACTATAGGAGGGTCATTTCCT 58.065 40.000 4.43 0.00 45.56 3.36
1739 2121 7.011382 TCTCTTACTATAGGAGGGTCATTTCC 58.989 42.308 4.43 0.00 33.18 3.13
1740 2122 8.480133 TTCTCTTACTATAGGAGGGTCATTTC 57.520 38.462 4.43 0.00 33.18 2.17
1741 2123 8.855804 TTTCTCTTACTATAGGAGGGTCATTT 57.144 34.615 4.43 0.00 33.18 2.32
1742 2124 9.095700 GATTTCTCTTACTATAGGAGGGTCATT 57.904 37.037 4.43 0.00 33.18 2.57
1743 2125 8.235230 TGATTTCTCTTACTATAGGAGGGTCAT 58.765 37.037 4.43 0.00 33.18 3.06
1744 2126 7.592736 TGATTTCTCTTACTATAGGAGGGTCA 58.407 38.462 4.43 4.64 33.18 4.02
1745 2127 8.480133 TTGATTTCTCTTACTATAGGAGGGTC 57.520 38.462 4.43 2.51 33.18 4.46
1746 2128 8.855804 TTTGATTTCTCTTACTATAGGAGGGT 57.144 34.615 4.43 0.00 33.18 4.34
1747 2129 9.549078 GTTTTGATTTCTCTTACTATAGGAGGG 57.451 37.037 4.43 1.94 33.18 4.30
1754 2136 8.918202 TGGTGTGTTTTGATTTCTCTTACTAT 57.082 30.769 0.00 0.00 0.00 2.12
1755 2137 8.740123 TTGGTGTGTTTTGATTTCTCTTACTA 57.260 30.769 0.00 0.00 0.00 1.82
1756 2138 7.639113 TTGGTGTGTTTTGATTTCTCTTACT 57.361 32.000 0.00 0.00 0.00 2.24
1757 2139 7.973944 ACTTTGGTGTGTTTTGATTTCTCTTAC 59.026 33.333 0.00 0.00 0.00 2.34
1758 2140 8.062065 ACTTTGGTGTGTTTTGATTTCTCTTA 57.938 30.769 0.00 0.00 0.00 2.10
1759 2141 6.935167 ACTTTGGTGTGTTTTGATTTCTCTT 58.065 32.000 0.00 0.00 0.00 2.85
1760 2142 6.378280 AGACTTTGGTGTGTTTTGATTTCTCT 59.622 34.615 0.00 0.00 0.00 3.10
1761 2143 6.564328 AGACTTTGGTGTGTTTTGATTTCTC 58.436 36.000 0.00 0.00 0.00 2.87
1762 2144 6.152661 TGAGACTTTGGTGTGTTTTGATTTCT 59.847 34.615 0.00 0.00 0.00 2.52
1763 2145 6.329496 TGAGACTTTGGTGTGTTTTGATTTC 58.671 36.000 0.00 0.00 0.00 2.17
1764 2146 6.279513 TGAGACTTTGGTGTGTTTTGATTT 57.720 33.333 0.00 0.00 0.00 2.17
1765 2147 5.913137 TGAGACTTTGGTGTGTTTTGATT 57.087 34.783 0.00 0.00 0.00 2.57
1766 2148 6.469782 AATGAGACTTTGGTGTGTTTTGAT 57.530 33.333 0.00 0.00 0.00 2.57
1767 2149 5.913137 AATGAGACTTTGGTGTGTTTTGA 57.087 34.783 0.00 0.00 0.00 2.69
1768 2150 6.559810 TGTAATGAGACTTTGGTGTGTTTTG 58.440 36.000 0.00 0.00 0.00 2.44
1769 2151 6.767524 TGTAATGAGACTTTGGTGTGTTTT 57.232 33.333 0.00 0.00 0.00 2.43
1770 2152 6.959639 ATGTAATGAGACTTTGGTGTGTTT 57.040 33.333 0.00 0.00 0.00 2.83
1771 2153 7.224297 ACTATGTAATGAGACTTTGGTGTGTT 58.776 34.615 0.00 0.00 0.00 3.32
1772 2154 6.769512 ACTATGTAATGAGACTTTGGTGTGT 58.230 36.000 0.00 0.00 0.00 3.72
1773 2155 8.948631 ATACTATGTAATGAGACTTTGGTGTG 57.051 34.615 0.00 0.00 0.00 3.82
1799 2181 8.768397 TGGTTTATGTTAGTGTCTCTTCCATAT 58.232 33.333 0.00 0.00 0.00 1.78
1800 2182 8.141298 TGGTTTATGTTAGTGTCTCTTCCATA 57.859 34.615 0.00 0.00 0.00 2.74
1801 2183 7.016153 TGGTTTATGTTAGTGTCTCTTCCAT 57.984 36.000 0.00 0.00 0.00 3.41
1802 2184 6.428083 TGGTTTATGTTAGTGTCTCTTCCA 57.572 37.500 0.00 0.00 0.00 3.53
1803 2185 7.739498 TTTGGTTTATGTTAGTGTCTCTTCC 57.261 36.000 0.00 0.00 0.00 3.46
1805 2187 9.965824 CATTTTTGGTTTATGTTAGTGTCTCTT 57.034 29.630 0.00 0.00 0.00 2.85
1806 2188 8.082242 GCATTTTTGGTTTATGTTAGTGTCTCT 58.918 33.333 0.00 0.00 0.00 3.10
1807 2189 8.082242 AGCATTTTTGGTTTATGTTAGTGTCTC 58.918 33.333 0.00 0.00 0.00 3.36
1808 2190 7.951591 AGCATTTTTGGTTTATGTTAGTGTCT 58.048 30.769 0.00 0.00 0.00 3.41
1809 2191 8.587952 AAGCATTTTTGGTTTATGTTAGTGTC 57.412 30.769 0.00 0.00 0.00 3.67
1820 2202 8.020244 CCGCAAAATAATAAGCATTTTTGGTTT 58.980 29.630 8.52 0.00 38.73 3.27
1821 2203 7.525759 CCGCAAAATAATAAGCATTTTTGGTT 58.474 30.769 8.52 0.00 38.73 3.67
1822 2204 6.403092 GCCGCAAAATAATAAGCATTTTTGGT 60.403 34.615 8.52 0.00 38.73 3.67
1823 2205 5.964751 GCCGCAAAATAATAAGCATTTTTGG 59.035 36.000 8.52 5.74 38.73 3.28
1824 2206 6.541086 TGCCGCAAAATAATAAGCATTTTTG 58.459 32.000 0.00 0.00 40.37 2.44
1825 2207 6.734104 TGCCGCAAAATAATAAGCATTTTT 57.266 29.167 0.00 0.00 34.22 1.94
1826 2208 6.734104 TTGCCGCAAAATAATAAGCATTTT 57.266 29.167 2.50 0.00 36.31 1.82
1827 2209 6.923928 ATTGCCGCAAAATAATAAGCATTT 57.076 29.167 10.42 0.00 0.00 2.32
1828 2210 8.606040 ATTATTGCCGCAAAATAATAAGCATT 57.394 26.923 10.42 0.00 38.06 3.56
1829 2211 9.139174 GTATTATTGCCGCAAAATAATAAGCAT 57.861 29.630 10.42 0.00 41.04 3.79
1830 2212 8.356657 AGTATTATTGCCGCAAAATAATAAGCA 58.643 29.630 10.42 0.00 41.04 3.91
1831 2213 8.742554 AGTATTATTGCCGCAAAATAATAAGC 57.257 30.769 10.42 4.89 41.04 3.09
1833 2215 9.469807 CCAAGTATTATTGCCGCAAAATAATAA 57.530 29.630 10.42 4.31 41.04 1.40
1834 2216 8.851145 TCCAAGTATTATTGCCGCAAAATAATA 58.149 29.630 10.42 11.59 39.64 0.98
1835 2217 7.721402 TCCAAGTATTATTGCCGCAAAATAAT 58.279 30.769 10.42 12.53 41.11 1.28
1836 2218 7.101652 TCCAAGTATTATTGCCGCAAAATAA 57.898 32.000 10.42 5.78 34.79 1.40
1837 2219 6.701145 TCCAAGTATTATTGCCGCAAAATA 57.299 33.333 10.42 11.91 0.00 1.40
1843 2225 4.994852 TCTACATCCAAGTATTATTGCCGC 59.005 41.667 0.00 0.00 0.00 6.53
1844 2226 5.408604 GGTCTACATCCAAGTATTATTGCCG 59.591 44.000 0.00 0.00 0.00 5.69
1852 2234 1.269621 GCGCGGTCTACATCCAAGTAT 60.270 52.381 8.83 0.00 0.00 2.12
1872 2262 3.871594 GGTCAATGGTCGGAATGTCTAAG 59.128 47.826 0.00 0.00 0.00 2.18
1894 2284 7.971183 AAACAGAGAACTTAAGCCTTAAGAG 57.029 36.000 26.73 6.44 44.19 2.85
1990 2380 2.622942 CTGGCCAGCTTTGTGAAACTAA 59.377 45.455 22.33 0.00 38.04 2.24
1997 2387 0.319297 GCTTTCTGGCCAGCTTTGTG 60.319 55.000 28.91 14.45 32.87 3.33
1999 2389 0.319297 GTGCTTTCTGGCCAGCTTTG 60.319 55.000 28.91 17.51 36.92 2.77
2010 2400 6.426587 ACCATATTCATGTAAGGTGCTTTCT 58.573 36.000 0.00 0.00 0.00 2.52
2022 2412 8.408601 GCAATAGAAGTTCAACCATATTCATGT 58.591 33.333 5.50 0.00 0.00 3.21
2033 2423 6.712547 AGCTATATGGGCAATAGAAGTTCAAC 59.287 38.462 5.50 0.00 0.00 3.18
2034 2424 6.841601 AGCTATATGGGCAATAGAAGTTCAA 58.158 36.000 5.50 0.00 0.00 2.69
2081 2483 0.240145 CAACCTCACAGCTGCACATG 59.760 55.000 15.27 4.46 0.00 3.21
2099 2501 5.333798 GCGAAAACTATGTGACAGTTAAGCA 60.334 40.000 0.00 0.00 35.19 3.91
2100 2502 5.080068 GCGAAAACTATGTGACAGTTAAGC 58.920 41.667 0.00 0.00 35.19 3.09
2101 2503 5.408604 AGGCGAAAACTATGTGACAGTTAAG 59.591 40.000 0.00 0.00 35.19 1.85
2102 2504 5.302360 AGGCGAAAACTATGTGACAGTTAA 58.698 37.500 0.00 0.00 35.19 2.01
2103 2505 4.890088 AGGCGAAAACTATGTGACAGTTA 58.110 39.130 0.00 0.00 35.19 2.24
2104 2506 3.740115 AGGCGAAAACTATGTGACAGTT 58.260 40.909 0.00 0.00 37.85 3.16
2116 2518 6.598753 TCAGCTATGTATTAAGGCGAAAAC 57.401 37.500 0.00 0.00 0.00 2.43
2120 2522 5.270893 TGTTCAGCTATGTATTAAGGCGA 57.729 39.130 0.00 0.00 0.00 5.54
2122 2524 6.423905 TCGAATGTTCAGCTATGTATTAAGGC 59.576 38.462 0.00 0.00 0.00 4.35
2129 2531 9.710900 ATATTCATTCGAATGTTCAGCTATGTA 57.289 29.630 31.49 10.24 42.00 2.29
2139 2541 7.492344 GCCAAAGGAAATATTCATTCGAATGTT 59.508 33.333 31.49 23.37 42.71 2.71
2145 2547 5.168526 TCGCCAAAGGAAATATTCATTCG 57.831 39.130 0.00 0.00 31.69 3.34
2146 2548 6.642540 GGAATCGCCAAAGGAAATATTCATTC 59.357 38.462 0.00 0.00 31.69 2.67
2159 2561 3.941483 ACTTATCACAGGAATCGCCAAAG 59.059 43.478 0.00 0.00 40.02 2.77
2165 2567 6.668541 AACAATGACTTATCACAGGAATCG 57.331 37.500 0.00 0.00 37.79 3.34
2178 2580 6.263842 TCATGCTTGAAGAGAAACAATGACTT 59.736 34.615 0.00 0.00 0.00 3.01
2181 2583 6.829229 ATCATGCTTGAAGAGAAACAATGA 57.171 33.333 6.36 0.00 34.96 2.57
2212 2622 5.393866 AGACCCCACAGTTTACAATGATTT 58.606 37.500 0.00 0.00 0.00 2.17
2217 2627 5.313280 TGTTAGACCCCACAGTTTACAAT 57.687 39.130 0.00 0.00 0.00 2.71
2233 2643 5.710513 AGCAGCAAAATGTGAATGTTAGA 57.289 34.783 0.00 0.00 0.00 2.10
2234 2644 6.774354 AAAGCAGCAAAATGTGAATGTTAG 57.226 33.333 0.00 0.00 0.00 2.34
2296 2706 3.505386 TGGTATGCACCTGGAAACAATT 58.495 40.909 0.00 0.00 45.98 2.32
2304 2714 1.683943 CCTGAATGGTATGCACCTGG 58.316 55.000 0.00 0.00 45.98 4.45
2455 2866 2.918345 GCCCGCAGCACAATGTTCA 61.918 57.895 0.00 0.00 42.97 3.18
2491 2902 5.534654 CAGGAAAAGGAACACATTGGAACTA 59.465 40.000 0.00 0.00 0.00 2.24
2500 2915 2.380064 ATGCCAGGAAAAGGAACACA 57.620 45.000 0.00 0.00 0.00 3.72
2532 2947 8.134202 TCAATTTGTCTCAGAGGAGTAACATA 57.866 34.615 0.00 0.00 42.05 2.29
2534 2949 6.267699 TCTCAATTTGTCTCAGAGGAGTAACA 59.732 38.462 0.00 0.00 42.05 2.41
2535 2950 6.692486 TCTCAATTTGTCTCAGAGGAGTAAC 58.308 40.000 0.00 0.00 42.05 2.50
2536 2951 6.918067 TCTCAATTTGTCTCAGAGGAGTAA 57.082 37.500 0.00 0.00 42.05 2.24
2537 2952 6.665248 TCATCTCAATTTGTCTCAGAGGAGTA 59.335 38.462 0.00 0.00 42.05 2.59
2538 2953 5.483231 TCATCTCAATTTGTCTCAGAGGAGT 59.517 40.000 0.00 0.00 42.05 3.85
2539 2954 5.975282 TCATCTCAATTTGTCTCAGAGGAG 58.025 41.667 0.00 0.00 42.80 3.69
2562 2977 3.896888 TGCATCCCAGTTCATTCAAACTT 59.103 39.130 0.00 0.00 37.38 2.66
2564 2979 3.578688 GTGCATCCCAGTTCATTCAAAC 58.421 45.455 0.00 0.00 0.00 2.93
2565 2980 2.228582 CGTGCATCCCAGTTCATTCAAA 59.771 45.455 0.00 0.00 0.00 2.69
2566 2981 1.811965 CGTGCATCCCAGTTCATTCAA 59.188 47.619 0.00 0.00 0.00 2.69
2567 2982 1.271325 ACGTGCATCCCAGTTCATTCA 60.271 47.619 0.00 0.00 0.00 2.57
2568 2983 1.131126 CACGTGCATCCCAGTTCATTC 59.869 52.381 0.82 0.00 0.00 2.67
2569 2984 1.167851 CACGTGCATCCCAGTTCATT 58.832 50.000 0.82 0.00 0.00 2.57
2570 2985 0.677731 CCACGTGCATCCCAGTTCAT 60.678 55.000 10.91 0.00 0.00 2.57
2571 2986 1.302431 CCACGTGCATCCCAGTTCA 60.302 57.895 10.91 0.00 0.00 3.18
2572 2987 2.040544 CCCACGTGCATCCCAGTTC 61.041 63.158 10.91 0.00 0.00 3.01
2573 2988 2.034066 CCCACGTGCATCCCAGTT 59.966 61.111 10.91 0.00 0.00 3.16
2574 2989 1.852157 ATTCCCACGTGCATCCCAGT 61.852 55.000 10.91 0.00 0.00 4.00
2575 2990 0.180171 TATTCCCACGTGCATCCCAG 59.820 55.000 10.91 0.00 0.00 4.45
2576 2991 0.180171 CTATTCCCACGTGCATCCCA 59.820 55.000 10.91 0.00 0.00 4.37
2577 2992 0.180406 ACTATTCCCACGTGCATCCC 59.820 55.000 10.91 0.00 0.00 3.85
2578 2993 1.299541 CACTATTCCCACGTGCATCC 58.700 55.000 10.91 0.00 0.00 3.51
2579 2994 1.665679 CACACTATTCCCACGTGCATC 59.334 52.381 10.91 0.00 32.07 3.91
2580 2995 1.003118 ACACACTATTCCCACGTGCAT 59.997 47.619 10.91 4.18 32.07 3.96
2581 2996 0.394938 ACACACTATTCCCACGTGCA 59.605 50.000 10.91 0.00 32.07 4.57
2582 2997 1.463444 GAACACACTATTCCCACGTGC 59.537 52.381 10.91 0.00 32.07 5.34
2583 2998 1.724623 CGAACACACTATTCCCACGTG 59.275 52.381 9.08 9.08 34.92 4.49
2584 2999 1.337447 CCGAACACACTATTCCCACGT 60.337 52.381 0.00 0.00 0.00 4.49
2585 3000 1.337447 ACCGAACACACTATTCCCACG 60.337 52.381 0.00 0.00 0.00 4.94
2586 3001 2.467566 ACCGAACACACTATTCCCAC 57.532 50.000 0.00 0.00 0.00 4.61
2587 3002 2.369203 TCAACCGAACACACTATTCCCA 59.631 45.455 0.00 0.00 0.00 4.37
2588 3003 3.048337 TCAACCGAACACACTATTCCC 57.952 47.619 0.00 0.00 0.00 3.97
2688 3103 2.359214 TGGTTGATAACTTTGTTGCGCA 59.641 40.909 5.66 5.66 0.00 6.09
2689 3104 2.724174 GTGGTTGATAACTTTGTTGCGC 59.276 45.455 0.00 0.00 0.00 6.09
2690 3105 3.305110 GGTGGTTGATAACTTTGTTGCG 58.695 45.455 0.00 0.00 0.00 4.85
2702 3117 1.416030 GGCTTTGTTTGGGTGGTTGAT 59.584 47.619 0.00 0.00 0.00 2.57
2707 3122 0.764271 ATTGGGCTTTGTTTGGGTGG 59.236 50.000 0.00 0.00 0.00 4.61
2710 3130 4.064388 CAAACTATTGGGCTTTGTTTGGG 58.936 43.478 0.00 0.00 41.86 4.12
2739 3159 2.827322 CAATCAGCCTCAACCAATTGGA 59.173 45.455 31.22 7.88 38.94 3.53
2741 3161 2.093869 CCCAATCAGCCTCAACCAATTG 60.094 50.000 0.00 0.00 37.14 2.32
2746 3166 2.054453 GCCCCAATCAGCCTCAACC 61.054 63.158 0.00 0.00 0.00 3.77
2749 3169 2.079088 TTGTGCCCCAATCAGCCTCA 62.079 55.000 0.00 0.00 0.00 3.86
2775 3195 6.581919 CACATGTATGTTAATGTTGTGGTGTG 59.418 38.462 0.00 0.00 39.39 3.82
2781 3201 5.863397 GCAAGCACATGTATGTTAATGTTGT 59.137 36.000 0.00 0.00 39.39 3.32
2782 3202 6.094719 AGCAAGCACATGTATGTTAATGTTG 58.905 36.000 0.00 0.00 39.39 3.33
2804 3224 4.929211 ACAAGACAAAAAGGTCAAACAAGC 59.071 37.500 0.00 0.00 40.29 4.01
2808 3228 8.592155 GTTCATTACAAGACAAAAAGGTCAAAC 58.408 33.333 0.00 0.00 40.29 2.93
2812 3232 8.406297 AGAAGTTCATTACAAGACAAAAAGGTC 58.594 33.333 5.50 0.00 38.08 3.85
2834 3254 9.155975 AGTACATAACATAAACTTGCAGAGAAG 57.844 33.333 0.00 0.00 0.00 2.85
2861 3281 9.515020 CTTCTGTAAACAAGCTGAAACAATAAA 57.485 29.630 0.00 0.00 0.00 1.40
2873 3293 3.186613 CGGACTTCCTTCTGTAAACAAGC 59.813 47.826 0.00 0.00 0.00 4.01
2877 3297 4.817517 TGATCGGACTTCCTTCTGTAAAC 58.182 43.478 0.00 0.00 0.00 2.01
2982 3403 7.568199 ACATGCTAGTATGTAACATTTTCCC 57.432 36.000 23.05 0.00 39.40 3.97
2983 3404 9.542462 TCTACATGCTAGTATGTAACATTTTCC 57.458 33.333 27.02 0.00 41.53 3.13
2989 3410 9.355916 AGAATCTCTACATGCTAGTATGTAACA 57.644 33.333 27.02 18.21 41.53 2.41
2990 3411 9.619316 CAGAATCTCTACATGCTAGTATGTAAC 57.381 37.037 27.02 16.48 41.53 2.50
2992 3413 8.926092 ACAGAATCTCTACATGCTAGTATGTA 57.074 34.615 25.98 25.98 41.31 2.29
2993 3414 7.831691 ACAGAATCTCTACATGCTAGTATGT 57.168 36.000 26.50 26.50 43.34 2.29
3014 3438 6.120812 GCGATACGAAGCAGTAAAATAACAG 58.879 40.000 0.00 0.00 0.00 3.16
3032 3457 0.832135 TCCCATCCTCCCTGCGATAC 60.832 60.000 0.00 0.00 0.00 2.24
3156 3581 9.171877 ACAAAAATAAAAGGCTGACATGAAAAA 57.828 25.926 0.00 0.00 0.00 1.94
3157 3582 8.729805 ACAAAAATAAAAGGCTGACATGAAAA 57.270 26.923 0.00 0.00 0.00 2.29
3158 3583 8.729805 AACAAAAATAAAAGGCTGACATGAAA 57.270 26.923 0.00 0.00 0.00 2.69
3159 3584 8.729805 AAACAAAAATAAAAGGCTGACATGAA 57.270 26.923 0.00 0.00 0.00 2.57
3160 3585 8.729805 AAAACAAAAATAAAAGGCTGACATGA 57.270 26.923 0.00 0.00 0.00 3.07
3233 3658 7.388776 TCACTGTCATGATTTAGTCAAAAGGAG 59.611 37.037 0.00 0.00 40.97 3.69
3235 3660 7.439157 TCACTGTCATGATTTAGTCAAAAGG 57.561 36.000 0.00 0.00 40.97 3.11
3237 3662 9.288576 AGAATCACTGTCATGATTTAGTCAAAA 57.711 29.630 0.00 0.00 46.88 2.44
3239 3664 8.260270 CAGAATCACTGTCATGATTTAGTCAA 57.740 34.615 0.00 0.00 46.88 3.18
3255 3680 8.462016 GGCAAGTCAAAAATATACAGAATCACT 58.538 33.333 0.00 0.00 0.00 3.41
3257 3682 8.347004 TGGCAAGTCAAAAATATACAGAATCA 57.653 30.769 0.00 0.00 0.00 2.57
3258 3683 8.462016 ACTGGCAAGTCAAAAATATACAGAATC 58.538 33.333 0.00 0.00 26.77 2.52
3260 3685 7.759489 ACTGGCAAGTCAAAAATATACAGAA 57.241 32.000 0.00 0.00 26.77 3.02
3275 3700 3.441572 GCAGTGAATATTGACTGGCAAGT 59.558 43.478 28.80 0.00 41.77 3.16
3276 3701 3.486375 CGCAGTGAATATTGACTGGCAAG 60.486 47.826 28.80 10.19 41.77 4.01
3277 3702 2.419673 CGCAGTGAATATTGACTGGCAA 59.580 45.455 28.80 0.00 41.77 4.52
3278 3703 2.009051 CGCAGTGAATATTGACTGGCA 58.991 47.619 28.80 3.04 41.77 4.92
3279 3704 2.279741 TCGCAGTGAATATTGACTGGC 58.720 47.619 28.80 21.24 41.77 4.85
3280 3705 3.785486 TCTCGCAGTGAATATTGACTGG 58.215 45.455 28.80 20.72 41.77 4.00
3281 3706 5.980698 AATCTCGCAGTGAATATTGACTG 57.019 39.130 25.38 25.38 43.87 3.51
3282 3707 7.386299 GGATAAATCTCGCAGTGAATATTGACT 59.614 37.037 1.25 1.25 32.30 3.41
3283 3708 7.171508 TGGATAAATCTCGCAGTGAATATTGAC 59.828 37.037 0.00 0.00 32.30 3.18
3284 3709 7.216494 TGGATAAATCTCGCAGTGAATATTGA 58.784 34.615 0.00 0.00 32.30 2.57
3285 3710 7.425577 TGGATAAATCTCGCAGTGAATATTG 57.574 36.000 0.00 0.00 32.30 1.90
3286 3711 8.627208 AATGGATAAATCTCGCAGTGAATATT 57.373 30.769 0.00 0.00 32.30 1.28
3287 3712 8.627208 AAATGGATAAATCTCGCAGTGAATAT 57.373 30.769 0.00 0.00 32.30 1.28
3288 3713 8.344831 CAAAATGGATAAATCTCGCAGTGAATA 58.655 33.333 0.00 0.00 32.30 1.75
3289 3714 6.949352 AAATGGATAAATCTCGCAGTGAAT 57.051 33.333 0.00 0.00 32.30 2.57
3290 3715 6.374053 TCAAAATGGATAAATCTCGCAGTGAA 59.626 34.615 0.00 0.00 32.30 3.18
3291 3716 5.879777 TCAAAATGGATAAATCTCGCAGTGA 59.120 36.000 0.00 0.00 0.00 3.41
3292 3717 5.967674 GTCAAAATGGATAAATCTCGCAGTG 59.032 40.000 0.00 0.00 0.00 3.66
3293 3718 5.647658 TGTCAAAATGGATAAATCTCGCAGT 59.352 36.000 0.00 0.00 0.00 4.40
3294 3719 6.122850 TGTCAAAATGGATAAATCTCGCAG 57.877 37.500 0.00 0.00 0.00 5.18
3295 3720 6.318396 TGATGTCAAAATGGATAAATCTCGCA 59.682 34.615 0.00 0.00 0.00 5.10
3296 3721 6.728200 TGATGTCAAAATGGATAAATCTCGC 58.272 36.000 0.00 0.00 0.00 5.03
3297 3722 7.325338 GCATGATGTCAAAATGGATAAATCTCG 59.675 37.037 0.00 0.00 0.00 4.04
3298 3723 8.139350 TGCATGATGTCAAAATGGATAAATCTC 58.861 33.333 0.00 0.00 0.00 2.75
3299 3724 8.014070 TGCATGATGTCAAAATGGATAAATCT 57.986 30.769 0.00 0.00 0.00 2.40
3300 3725 8.827177 ATGCATGATGTCAAAATGGATAAATC 57.173 30.769 0.00 0.00 31.51 2.17
3304 3729 9.517868 TGTATATGCATGATGTCAAAATGGATA 57.482 29.630 10.16 11.97 38.46 2.59
3305 3730 8.411991 TGTATATGCATGATGTCAAAATGGAT 57.588 30.769 10.16 9.20 36.49 3.41
3306 3731 7.820578 TGTATATGCATGATGTCAAAATGGA 57.179 32.000 10.16 0.00 0.00 3.41
3307 3732 9.483916 AAATGTATATGCATGATGTCAAAATGG 57.516 29.630 10.16 0.00 0.00 3.16
3364 3789 8.814931 AGCTCATGAGTAAGCTGATTATTCTAT 58.185 33.333 23.38 0.50 46.78 1.98
3377 3802 5.240891 TGACCTCAAAAGCTCATGAGTAAG 58.759 41.667 23.38 11.49 41.16 2.34
3378 3803 5.227569 TGACCTCAAAAGCTCATGAGTAA 57.772 39.130 23.38 8.61 41.16 2.24
3380 3805 3.777106 TGACCTCAAAAGCTCATGAGT 57.223 42.857 23.38 8.16 41.16 3.41
3417 3843 7.147828 CCAACTAGAATGACTCATTACAGAGGA 60.148 40.741 14.73 0.00 39.97 3.71
3436 3862 2.086869 CAACTGGATGCCACCAACTAG 58.913 52.381 0.87 0.00 39.59 2.57
3440 3866 0.184692 TCACAACTGGATGCCACCAA 59.815 50.000 0.87 0.00 39.59 3.67
3442 3868 2.418368 TATCACAACTGGATGCCACC 57.582 50.000 0.00 0.00 0.00 4.61
3512 3938 1.614903 ACCATTCCACTGTTCGTACGA 59.385 47.619 15.28 15.28 0.00 3.43
3518 3944 6.699575 AGCATATAAACCATTCCACTGTTC 57.300 37.500 0.00 0.00 0.00 3.18
3572 4001 4.064388 CGCAAACCAAGAAAAATTCCCAT 58.936 39.130 0.00 0.00 0.00 4.00
3573 4002 3.118592 ACGCAAACCAAGAAAAATTCCCA 60.119 39.130 0.00 0.00 0.00 4.37
3575 4004 6.779115 ATAACGCAAACCAAGAAAAATTCC 57.221 33.333 0.00 0.00 0.00 3.01
3594 4024 7.270047 TCAGGTATGCTGTGGTTTAGTATAAC 58.730 38.462 0.00 0.00 32.62 1.89
3622 4052 0.678950 TCATGCGAGTGTGAACCTCA 59.321 50.000 0.00 0.00 0.00 3.86
3624 4054 1.552337 AGATCATGCGAGTGTGAACCT 59.448 47.619 0.00 0.00 0.00 3.50
3625 4055 2.015736 AGATCATGCGAGTGTGAACC 57.984 50.000 0.00 0.00 0.00 3.62
3626 4056 5.725110 AATAAGATCATGCGAGTGTGAAC 57.275 39.130 0.00 0.00 0.00 3.18
3627 4057 6.479990 CCTTAATAAGATCATGCGAGTGTGAA 59.520 38.462 0.83 0.00 0.00 3.18
3628 4058 5.985530 CCTTAATAAGATCATGCGAGTGTGA 59.014 40.000 0.83 0.00 0.00 3.58
3629 4059 5.178252 CCCTTAATAAGATCATGCGAGTGTG 59.822 44.000 0.83 0.00 0.00 3.82
3630 4060 5.300752 CCCTTAATAAGATCATGCGAGTGT 58.699 41.667 0.83 0.00 0.00 3.55
3631 4061 4.153117 GCCCTTAATAAGATCATGCGAGTG 59.847 45.833 0.83 0.00 0.00 3.51
3632 4062 4.202357 TGCCCTTAATAAGATCATGCGAGT 60.202 41.667 0.83 0.00 0.00 4.18
3633 4063 4.318332 TGCCCTTAATAAGATCATGCGAG 58.682 43.478 0.83 0.00 0.00 5.03
3635 4065 4.940046 AGATGCCCTTAATAAGATCATGCG 59.060 41.667 0.83 0.00 0.00 4.73
3636 4066 6.127786 GGAAGATGCCCTTAATAAGATCATGC 60.128 42.308 0.83 0.00 34.68 4.06
3638 4068 7.173722 CAGGAAGATGCCCTTAATAAGATCAT 58.826 38.462 0.83 4.42 34.68 2.45
3639 4069 6.537355 CAGGAAGATGCCCTTAATAAGATCA 58.463 40.000 0.83 0.00 34.68 2.92
3640 4070 5.414144 GCAGGAAGATGCCCTTAATAAGATC 59.586 44.000 0.83 0.00 40.43 2.75
3641 4071 5.163055 TGCAGGAAGATGCCCTTAATAAGAT 60.163 40.000 0.83 0.00 45.91 2.40
3642 4072 4.165950 TGCAGGAAGATGCCCTTAATAAGA 59.834 41.667 0.83 0.00 45.91 2.10
3643 4073 4.464008 TGCAGGAAGATGCCCTTAATAAG 58.536 43.478 0.00 0.00 45.91 1.73
3644 4074 4.518278 TGCAGGAAGATGCCCTTAATAA 57.482 40.909 0.00 0.00 45.91 1.40
3645 4075 4.729552 ATGCAGGAAGATGCCCTTAATA 57.270 40.909 0.00 0.00 45.91 0.98
3646 4076 3.607490 ATGCAGGAAGATGCCCTTAAT 57.393 42.857 0.00 0.00 45.91 1.40
3647 4077 3.386932 AATGCAGGAAGATGCCCTTAA 57.613 42.857 0.00 0.00 45.91 1.85
3648 4078 4.729552 ATAATGCAGGAAGATGCCCTTA 57.270 40.909 0.00 0.00 45.91 2.69
3649 4079 3.607490 ATAATGCAGGAAGATGCCCTT 57.393 42.857 0.00 0.00 45.91 3.95
3650 4080 3.228453 CAATAATGCAGGAAGATGCCCT 58.772 45.455 0.00 0.00 45.91 5.19
3651 4081 2.961062 ACAATAATGCAGGAAGATGCCC 59.039 45.455 0.00 0.00 45.91 5.36
3652 4082 5.972107 ATACAATAATGCAGGAAGATGCC 57.028 39.130 0.00 0.00 45.91 4.40
3653 4083 6.402550 CGGTATACAATAATGCAGGAAGATGC 60.403 42.308 5.01 0.00 46.68 3.91
3654 4084 6.650807 ACGGTATACAATAATGCAGGAAGATG 59.349 38.462 5.01 0.00 0.00 2.90
3655 4085 6.769512 ACGGTATACAATAATGCAGGAAGAT 58.230 36.000 5.01 0.00 0.00 2.40
3656 4086 6.169557 ACGGTATACAATAATGCAGGAAGA 57.830 37.500 5.01 0.00 0.00 2.87
3657 4087 7.152645 AGTACGGTATACAATAATGCAGGAAG 58.847 38.462 5.01 0.00 0.00 3.46
3658 4088 7.058023 AGTACGGTATACAATAATGCAGGAA 57.942 36.000 5.01 0.00 0.00 3.36
3659 4089 6.265876 TGAGTACGGTATACAATAATGCAGGA 59.734 38.462 5.01 0.00 0.00 3.86
3660 4090 6.365247 GTGAGTACGGTATACAATAATGCAGG 59.635 42.308 5.01 0.00 0.00 4.85
3698 4128 7.667575 ACCCATGCATCTAGGATATTACTAG 57.332 40.000 12.74 8.39 39.38 2.57
3733 4164 1.152819 ATACATGCTGGGCTGCTGG 60.153 57.895 0.00 0.00 0.00 4.85
3734 4165 0.464916 TCATACATGCTGGGCTGCTG 60.465 55.000 0.00 0.00 0.00 4.41
3735 4166 0.477204 ATCATACATGCTGGGCTGCT 59.523 50.000 0.00 0.00 0.00 4.24
3736 4167 0.596577 CATCATACATGCTGGGCTGC 59.403 55.000 0.00 0.00 0.00 5.25
3737 4168 0.596577 GCATCATACATGCTGGGCTG 59.403 55.000 0.00 0.00 41.52 4.85
3738 4169 0.538977 GGCATCATACATGCTGGGCT 60.539 55.000 6.53 0.00 44.02 5.19
3739 4170 0.538977 AGGCATCATACATGCTGGGC 60.539 55.000 6.53 0.00 44.02 5.36
3740 4171 1.991121 AAGGCATCATACATGCTGGG 58.009 50.000 6.53 0.00 44.02 4.45
3741 4172 2.545113 GCAAAGGCATCATACATGCTGG 60.545 50.000 6.53 0.00 44.02 4.85
3742 4173 2.739292 GCAAAGGCATCATACATGCTG 58.261 47.619 6.53 0.00 44.02 4.41
3755 4186 3.358707 TACCGCGGTTGCAAAGGC 61.359 61.111 38.94 6.82 42.97 4.35
3756 4187 2.182614 CTGTACCGCGGTTGCAAAGG 62.183 60.000 38.94 18.88 42.97 3.11
3757 4188 1.206578 CTGTACCGCGGTTGCAAAG 59.793 57.895 38.94 19.74 42.97 2.77
3758 4189 2.899044 GCTGTACCGCGGTTGCAAA 61.899 57.895 38.94 16.18 42.97 3.68
3759 4190 3.350612 GCTGTACCGCGGTTGCAA 61.351 61.111 38.94 16.65 42.97 4.08
3760 4191 4.308458 AGCTGTACCGCGGTTGCA 62.308 61.111 38.94 31.12 42.97 4.08
3761 4192 3.788766 CAGCTGTACCGCGGTTGC 61.789 66.667 38.94 33.43 37.91 4.17
3762 4193 1.225376 TTTCAGCTGTACCGCGGTTG 61.225 55.000 38.94 27.60 36.21 3.77
3763 4194 0.533308 TTTTCAGCTGTACCGCGGTT 60.533 50.000 38.94 20.63 34.40 4.44
3764 4195 0.533308 TTTTTCAGCTGTACCGCGGT 60.533 50.000 36.01 36.01 34.40 5.68
3765 4196 0.802494 ATTTTTCAGCTGTACCGCGG 59.198 50.000 26.86 26.86 34.40 6.46
3766 4197 1.463056 TGATTTTTCAGCTGTACCGCG 59.537 47.619 14.67 0.00 34.40 6.46
3767 4198 2.414161 GGTGATTTTTCAGCTGTACCGC 60.414 50.000 14.67 0.27 35.46 5.68
3768 4199 2.159707 CGGTGATTTTTCAGCTGTACCG 60.160 50.000 14.67 17.25 42.89 4.02
3769 4200 2.161609 CCGGTGATTTTTCAGCTGTACC 59.838 50.000 14.67 10.49 36.11 3.34
3776 4207 3.052036 CAAACAGCCGGTGATTTTTCAG 58.948 45.455 1.90 0.00 0.00 3.02
3855 4293 1.753073 AGTATGCCCTGCTTGCATTTC 59.247 47.619 12.20 7.55 46.91 2.17
3877 4315 5.045215 CACCGACTAAAGTGTGAACTAACA 58.955 41.667 0.00 0.00 0.00 2.41
3878 4316 4.446719 CCACCGACTAAAGTGTGAACTAAC 59.553 45.833 2.97 0.00 31.88 2.34
3901 4339 1.298014 CAGCTGAAGTGACTCCCCC 59.702 63.158 8.42 0.00 0.00 5.40
3910 4414 1.406539 CAAAGTTGTGGCAGCTGAAGT 59.593 47.619 20.43 2.25 0.00 3.01
3922 4426 3.146847 GCTGGCCTTAGTACAAAGTTGT 58.853 45.455 3.32 1.75 44.86 3.32
3935 4439 3.665675 CTCCGCTTACGCTGGCCTT 62.666 63.158 3.32 0.00 38.22 4.35
3937 4441 2.925162 ATTCTCCGCTTACGCTGGCC 62.925 60.000 0.00 0.00 38.22 5.36
3938 4442 1.491505 GATTCTCCGCTTACGCTGGC 61.492 60.000 0.00 0.00 38.22 4.85
3944 4451 3.528597 ACCTTCAGATTCTCCGCTTAC 57.471 47.619 0.00 0.00 0.00 2.34
3946 4453 2.039084 ACAACCTTCAGATTCTCCGCTT 59.961 45.455 0.00 0.00 0.00 4.68
3949 4456 7.333423 TGTTAATTACAACCTTCAGATTCTCCG 59.667 37.037 0.00 0.00 32.64 4.63
3977 4485 0.534412 GAGCTAGAAGGCTGCAGTCA 59.466 55.000 22.50 0.00 43.20 3.41
3978 4486 3.360886 GAGCTAGAAGGCTGCAGTC 57.639 57.895 11.28 11.28 43.20 3.51
3983 4491 1.134848 GTCACAGGAGCTAGAAGGCTG 60.135 57.143 0.00 0.00 43.20 4.85
3986 4494 3.007398 AGTTTGTCACAGGAGCTAGAAGG 59.993 47.826 0.00 0.00 0.00 3.46
3987 4495 3.993081 CAGTTTGTCACAGGAGCTAGAAG 59.007 47.826 0.00 0.00 0.00 2.85
4029 4537 3.814625 TCCACTACACAAACATTCAGCA 58.185 40.909 0.00 0.00 0.00 4.41
4030 4538 4.829064 TTCCACTACACAAACATTCAGC 57.171 40.909 0.00 0.00 0.00 4.26
4031 4539 8.729756 TGAATATTCCACTACACAAACATTCAG 58.270 33.333 12.90 0.00 0.00 3.02
4032 4540 8.628630 TGAATATTCCACTACACAAACATTCA 57.371 30.769 12.90 0.00 0.00 2.57
4045 4553 9.334947 CAGTGAAGACATTATGAATATTCCACT 57.665 33.333 12.90 10.87 0.00 4.00
4046 4554 8.562892 CCAGTGAAGACATTATGAATATTCCAC 58.437 37.037 12.90 8.98 0.00 4.02
4100 4636 6.051646 TCATGAATGATTCTAACACGCATG 57.948 37.500 6.73 0.00 35.47 4.06
4101 4637 6.317140 AGTTCATGAATGATTCTAACACGCAT 59.683 34.615 12.12 0.00 36.56 4.73
4102 4638 5.643348 AGTTCATGAATGATTCTAACACGCA 59.357 36.000 12.12 0.00 36.56 5.24
4103 4639 5.961843 CAGTTCATGAATGATTCTAACACGC 59.038 40.000 12.12 0.00 36.56 5.34
4104 4640 7.063898 AGACAGTTCATGAATGATTCTAACACG 59.936 37.037 12.12 6.62 36.56 4.49
4105 4641 8.261492 AGACAGTTCATGAATGATTCTAACAC 57.739 34.615 12.12 0.00 36.56 3.32
4107 4643 9.593134 AGTAGACAGTTCATGAATGATTCTAAC 57.407 33.333 12.12 8.24 36.56 2.34
4108 4644 9.591792 CAGTAGACAGTTCATGAATGATTCTAA 57.408 33.333 12.12 0.00 36.56 2.10
4110 4646 7.845037 TCAGTAGACAGTTCATGAATGATTCT 58.155 34.615 12.12 12.85 36.56 2.40
4111 4647 8.484641 TTCAGTAGACAGTTCATGAATGATTC 57.515 34.615 12.12 6.34 36.56 2.52
4112 4648 7.551974 CCTTCAGTAGACAGTTCATGAATGATT 59.448 37.037 12.12 7.47 36.56 2.57
4239 4825 5.220117 CGTCTTGCTCTTGAAATCGTAGAAG 60.220 44.000 0.00 0.00 43.58 2.85
4398 4984 0.036765 TCCACTGGTACCGACATTGC 60.037 55.000 7.57 0.00 0.00 3.56
4484 5070 1.006832 CGTTTAGATTGGGTCGCCAG 58.993 55.000 0.00 0.00 0.00 4.85
4551 5137 1.497716 TGGGGCCTAGAGACGAGAATA 59.502 52.381 0.84 0.00 0.00 1.75
4552 5138 0.261991 TGGGGCCTAGAGACGAGAAT 59.738 55.000 0.84 0.00 0.00 2.40
4558 5147 0.253327 CAAGGTTGGGGCCTAGAGAC 59.747 60.000 0.84 0.00 38.03 3.36
4749 5338 7.159372 AGCAAGAAATCAAAATCAAGCTGAAT 58.841 30.769 0.00 0.00 30.25 2.57
4777 5366 0.035458 GGTAGGCATCCCCAGAATCG 59.965 60.000 0.00 0.00 35.39 3.34
4792 5381 5.007332 GGTCTGGTAAAATACATTGCGGTAG 59.993 44.000 0.00 0.00 0.00 3.18
4808 5397 4.082190 CACTTCTCGATTTCAGGTCTGGTA 60.082 45.833 0.00 0.00 0.00 3.25
4826 5415 4.446051 GCTCTGAGTCAACAAGTACACTTC 59.554 45.833 6.53 0.00 33.11 3.01
5124 5767 7.526608 AGTTTGAAATATCATGTACAACACCG 58.473 34.615 0.00 0.00 34.96 4.94
5143 5786 8.530311 ACATTGGACATGCAATAATAAGTTTGA 58.470 29.630 0.00 0.00 0.00 2.69
5150 5793 8.108999 AGCCTATACATTGGACATGCAATAATA 58.891 33.333 0.00 0.69 0.00 0.98
5157 5800 6.430925 TGAAATAGCCTATACATTGGACATGC 59.569 38.462 0.00 0.00 0.00 4.06
5159 5802 9.592196 AATTGAAATAGCCTATACATTGGACAT 57.408 29.630 0.00 0.00 0.00 3.06
5172 5815 9.413734 AGATGCTAGTTTAAATTGAAATAGCCT 57.586 29.630 21.28 14.60 34.63 4.58
5223 5900 9.807649 TCATGTATGATATCTTGATCCAATACG 57.192 33.333 3.98 0.00 0.00 3.06
5247 5924 8.406297 CAGTTAGGCTATTATATCGCTGTATCA 58.594 37.037 0.00 0.00 0.00 2.15
5248 5925 8.622157 TCAGTTAGGCTATTATATCGCTGTATC 58.378 37.037 0.00 0.00 0.00 2.24
5291 5968 7.413219 CGACTCGGTTATATCTCCTCTATGTTC 60.413 44.444 0.00 0.00 0.00 3.18
5312 5989 0.613777 ACCCCATTGTCTTCCGACTC 59.386 55.000 0.00 0.00 40.86 3.36
5313 5990 0.324943 CACCCCATTGTCTTCCGACT 59.675 55.000 0.00 0.00 40.86 4.18
5314 5991 0.036306 ACACCCCATTGTCTTCCGAC 59.964 55.000 0.00 0.00 40.64 4.79
5315 5992 1.276989 GTACACCCCATTGTCTTCCGA 59.723 52.381 0.00 0.00 0.00 4.55
5317 5994 2.871096 TGTACACCCCATTGTCTTCC 57.129 50.000 0.00 0.00 0.00 3.46
5318 5995 6.039382 GGAAATATGTACACCCCATTGTCTTC 59.961 42.308 0.00 0.00 0.00 2.87
5319 5996 5.891551 GGAAATATGTACACCCCATTGTCTT 59.108 40.000 0.00 0.00 0.00 3.01
5320 5997 5.445964 GGAAATATGTACACCCCATTGTCT 58.554 41.667 0.00 0.00 0.00 3.41
5321 5998 4.583073 GGGAAATATGTACACCCCATTGTC 59.417 45.833 7.16 2.88 35.00 3.18
5322 5999 4.231890 AGGGAAATATGTACACCCCATTGT 59.768 41.667 13.51 0.00 41.26 2.71
5323 6000 4.803452 AGGGAAATATGTACACCCCATTG 58.197 43.478 13.51 0.00 41.26 2.82
5324 6001 6.796867 ATAGGGAAATATGTACACCCCATT 57.203 37.500 13.51 2.29 41.26 3.16
5326 6003 7.709024 TTAATAGGGAAATATGTACACCCCA 57.291 36.000 13.51 2.39 41.26 4.96
5327 6004 8.387813 TGATTAATAGGGAAATATGTACACCCC 58.612 37.037 13.51 11.47 41.26 4.95
5373 6099 8.693504 CACACATGTGCTTCAAATAAAGTAAAG 58.306 33.333 25.68 0.00 39.39 1.85
5421 6147 4.207165 ACACCCATTATGTATGCAAGACC 58.793 43.478 0.00 0.00 32.60 3.85
5422 6148 5.820423 TGTACACCCATTATGTATGCAAGAC 59.180 40.000 0.00 0.00 35.11 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.