Multiple sequence alignment - TraesCS5D01G470400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G470400 chr5D 100.000 6880 0 0 1 6880 511884398 511877519 0.000000e+00 12706.0
1 TraesCS5D01G470400 chr5D 98.070 570 8 2 6311 6880 538149868 538149302 0.000000e+00 989.0
2 TraesCS5D01G470400 chr5B 95.278 6014 158 50 225 6155 642837450 642831480 0.000000e+00 9417.0
3 TraesCS5D01G470400 chr5B 84.962 266 27 10 89 353 642839848 642839595 2.460000e-64 257.0
4 TraesCS5D01G470400 chr5B 97.959 147 3 0 6165 6311 642831114 642830968 8.860000e-64 255.0
5 TraesCS5D01G470400 chr5A 96.335 3765 96 15 1007 4758 640173638 640169903 0.000000e+00 6150.0
6 TraesCS5D01G470400 chr5A 97.498 1559 35 1 4757 6311 640169467 640167909 0.000000e+00 2660.0
7 TraesCS5D01G470400 chr5A 85.592 701 41 21 154 827 640174709 640174042 0.000000e+00 680.0
8 TraesCS5D01G470400 chr4D 98.594 569 4 3 6312 6880 460893803 460893239 0.000000e+00 1003.0
9 TraesCS5D01G470400 chr4D 98.424 571 6 3 6310 6880 442797249 442796682 0.000000e+00 1002.0
10 TraesCS5D01G470400 chr4D 98.418 569 5 3 6312 6880 460915837 460915273 0.000000e+00 998.0
11 TraesCS5D01G470400 chr4D 98.243 569 6 3 6312 6880 460855335 460854771 0.000000e+00 992.0
12 TraesCS5D01G470400 chr4D 97.188 569 11 3 6312 6880 453471181 453471744 0.000000e+00 957.0
13 TraesCS5D01G470400 chr7D 98.067 569 8 2 6312 6880 59084042 59083477 0.000000e+00 987.0
14 TraesCS5D01G470400 chr7D 97.891 569 11 1 6312 6880 59042713 59042146 0.000000e+00 983.0
15 TraesCS5D01G470400 chrUn 98.399 562 5 3 6319 6880 348538129 348538686 0.000000e+00 985.0
16 TraesCS5D01G470400 chr2D 81.862 1042 169 13 4861 5887 55154758 55153722 0.000000e+00 859.0
17 TraesCS5D01G470400 chr2D 79.307 952 155 32 2451 3371 55157267 55156327 4.530000e-176 628.0
18 TraesCS5D01G470400 chr2D 82.222 450 72 5 3457 3901 55156214 55155768 1.400000e-101 381.0
19 TraesCS5D01G470400 chr2D 87.755 196 23 1 1152 1346 55158766 55158571 1.930000e-55 228.0
20 TraesCS5D01G470400 chr2D 100.000 28 0 0 51 78 516647359 516647332 1.200000e-02 52.8
21 TraesCS5D01G470400 chr2B 81.862 1042 169 13 4861 5887 87351929 87350893 0.000000e+00 859.0
22 TraesCS5D01G470400 chr2B 83.407 452 67 5 3457 3903 87353410 87352962 4.970000e-111 412.0
23 TraesCS5D01G470400 chr2B 87.766 188 22 1 1152 1338 87355957 87355770 1.160000e-52 219.0
24 TraesCS5D01G470400 chr2B 84.653 202 26 4 2012 2209 87354867 87354667 5.440000e-46 196.0
25 TraesCS5D01G470400 chr2A 81.766 1042 170 13 4861 5887 55944334 55943298 0.000000e+00 854.0
26 TraesCS5D01G470400 chr2A 79.114 948 162 27 2451 3372 55946860 55945923 7.580000e-174 621.0
27 TraesCS5D01G470400 chr2A 82.781 453 68 7 3457 3903 55945811 55945363 5.000000e-106 396.0
28 TraesCS5D01G470400 chr2A 86.364 198 26 1 1152 1348 55948382 55948185 1.500000e-51 215.0
29 TraesCS5D01G470400 chr2A 84.653 202 26 4 2012 2209 55947266 55947066 5.440000e-46 196.0
30 TraesCS5D01G470400 chr1A 80.791 177 24 9 1171 1342 256823812 256823983 5.600000e-26 130.0
31 TraesCS5D01G470400 chr1B 78.571 154 21 5 1152 1305 321248715 321248856 2.640000e-14 91.6
32 TraesCS5D01G470400 chr6B 76.623 154 24 4 1152 1305 363662775 363662916 2.660000e-09 75.0
33 TraesCS5D01G470400 chr6B 96.970 33 1 0 51 83 185655896 185655864 1.000000e-03 56.5
34 TraesCS5D01G470400 chr6A 90.741 54 5 0 1263 1316 4929427 4929374 9.570000e-09 73.1
35 TraesCS5D01G470400 chr6A 96.970 33 1 0 51 83 549269838 549269806 1.000000e-03 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G470400 chr5D 511877519 511884398 6879 True 12706.000000 12706 100.000000 1 6880 1 chr5D.!!$R1 6879
1 TraesCS5D01G470400 chr5D 538149302 538149868 566 True 989.000000 989 98.070000 6311 6880 1 chr5D.!!$R2 569
2 TraesCS5D01G470400 chr5B 642830968 642839848 8880 True 3309.666667 9417 92.733000 89 6311 3 chr5B.!!$R1 6222
3 TraesCS5D01G470400 chr5A 640167909 640174709 6800 True 3163.333333 6150 93.141667 154 6311 3 chr5A.!!$R1 6157
4 TraesCS5D01G470400 chr4D 460893239 460893803 564 True 1003.000000 1003 98.594000 6312 6880 1 chr4D.!!$R3 568
5 TraesCS5D01G470400 chr4D 442796682 442797249 567 True 1002.000000 1002 98.424000 6310 6880 1 chr4D.!!$R1 570
6 TraesCS5D01G470400 chr4D 460915273 460915837 564 True 998.000000 998 98.418000 6312 6880 1 chr4D.!!$R4 568
7 TraesCS5D01G470400 chr4D 460854771 460855335 564 True 992.000000 992 98.243000 6312 6880 1 chr4D.!!$R2 568
8 TraesCS5D01G470400 chr4D 453471181 453471744 563 False 957.000000 957 97.188000 6312 6880 1 chr4D.!!$F1 568
9 TraesCS5D01G470400 chr7D 59083477 59084042 565 True 987.000000 987 98.067000 6312 6880 1 chr7D.!!$R2 568
10 TraesCS5D01G470400 chr7D 59042146 59042713 567 True 983.000000 983 97.891000 6312 6880 1 chr7D.!!$R1 568
11 TraesCS5D01G470400 chrUn 348538129 348538686 557 False 985.000000 985 98.399000 6319 6880 1 chrUn.!!$F1 561
12 TraesCS5D01G470400 chr2D 55153722 55158766 5044 True 524.000000 859 82.786500 1152 5887 4 chr2D.!!$R2 4735
13 TraesCS5D01G470400 chr2B 87350893 87355957 5064 True 421.500000 859 84.422000 1152 5887 4 chr2B.!!$R1 4735
14 TraesCS5D01G470400 chr2A 55943298 55948382 5084 True 456.400000 854 82.935600 1152 5887 5 chr2A.!!$R1 4735

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
76 77 0.036164 TTGGTTCTGATCACCGGGTG 59.964 55.000 21.27 21.27 37.07 4.61 F
1977 4824 0.108186 TACTTGCATCCCGCTGTGAG 60.108 55.000 0.00 0.00 43.06 3.51 F
2154 5004 0.875059 CTTCTGAAGGCCGTGGAAAC 59.125 55.000 9.57 0.00 0.00 2.78 F
3371 6262 1.280133 CCTGGAATGCTTCAGGTCAGA 59.720 52.381 0.00 0.00 44.03 3.27 F
3378 6269 1.973515 TGCTTCAGGTCAGACTCATGT 59.026 47.619 0.00 0.00 0.00 3.21 F
5066 8640 0.597568 TTTTCAGCAGGCATTGTCCG 59.402 50.000 0.00 0.00 0.00 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2052 4899 1.063806 CTCTCTCTTTCCACGCAACG 58.936 55.000 0.0 0.0 0.00 4.10 R
3556 6478 0.321564 TCTTGTGGTGCTGGAATCCG 60.322 55.000 0.0 0.0 0.00 4.18 R
4016 6943 2.816087 CTGCAGCAAACAGATACAGGTT 59.184 45.455 0.0 0.0 37.32 3.50 R
4229 7192 0.108585 ACATTGGCACAGAACCGTCT 59.891 50.000 0.0 0.0 42.39 4.18 R
5363 8947 1.202927 CCAACACCACTCCACCTCATT 60.203 52.381 0.0 0.0 0.00 2.57 R
6565 10507 0.324645 GGTCCTGCCCAACATCCATT 60.325 55.000 0.0 0.0 0.00 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.616969 TTGAGCCAAGTTGACGAGC 58.383 52.632 3.87 0.00 0.00 5.03
19 20 0.179059 TTGAGCCAAGTTGACGAGCA 60.179 50.000 3.87 0.00 0.00 4.26
20 21 0.179059 TGAGCCAAGTTGACGAGCAA 60.179 50.000 3.87 0.00 0.00 3.91
21 22 1.160137 GAGCCAAGTTGACGAGCAAT 58.840 50.000 3.87 0.00 39.03 3.56
22 23 1.537202 GAGCCAAGTTGACGAGCAATT 59.463 47.619 3.87 0.00 39.03 2.32
23 24 1.537202 AGCCAAGTTGACGAGCAATTC 59.463 47.619 3.87 0.00 39.03 2.17
24 25 1.266718 GCCAAGTTGACGAGCAATTCA 59.733 47.619 3.87 0.00 39.03 2.57
25 26 2.918131 GCCAAGTTGACGAGCAATTCAC 60.918 50.000 3.87 0.00 39.03 3.18
26 27 2.350772 CCAAGTTGACGAGCAATTCACC 60.351 50.000 3.87 0.00 39.03 4.02
27 28 1.523758 AGTTGACGAGCAATTCACCC 58.476 50.000 0.00 0.00 39.03 4.61
28 29 1.202758 AGTTGACGAGCAATTCACCCA 60.203 47.619 0.00 0.00 39.03 4.51
29 30 1.606668 GTTGACGAGCAATTCACCCAA 59.393 47.619 0.00 0.00 39.03 4.12
30 31 1.234821 TGACGAGCAATTCACCCAAC 58.765 50.000 0.00 0.00 0.00 3.77
31 32 0.521735 GACGAGCAATTCACCCAACC 59.478 55.000 0.00 0.00 0.00 3.77
32 33 0.179004 ACGAGCAATTCACCCAACCA 60.179 50.000 0.00 0.00 0.00 3.67
33 34 0.240945 CGAGCAATTCACCCAACCAC 59.759 55.000 0.00 0.00 0.00 4.16
34 35 1.620822 GAGCAATTCACCCAACCACT 58.379 50.000 0.00 0.00 0.00 4.00
35 36 2.790433 GAGCAATTCACCCAACCACTA 58.210 47.619 0.00 0.00 0.00 2.74
36 37 3.356290 GAGCAATTCACCCAACCACTAT 58.644 45.455 0.00 0.00 0.00 2.12
37 38 3.091545 AGCAATTCACCCAACCACTATG 58.908 45.455 0.00 0.00 0.00 2.23
38 39 2.825532 GCAATTCACCCAACCACTATGT 59.174 45.455 0.00 0.00 0.00 2.29
39 40 3.119495 GCAATTCACCCAACCACTATGTC 60.119 47.826 0.00 0.00 0.00 3.06
40 41 4.335416 CAATTCACCCAACCACTATGTCT 58.665 43.478 0.00 0.00 0.00 3.41
41 42 4.657814 ATTCACCCAACCACTATGTCTT 57.342 40.909 0.00 0.00 0.00 3.01
42 43 3.417069 TCACCCAACCACTATGTCTTG 57.583 47.619 0.00 0.00 0.00 3.02
43 44 2.039746 TCACCCAACCACTATGTCTTGG 59.960 50.000 0.00 0.00 39.00 3.61
45 46 2.039879 ACCCAACCACTATGTCTTGGTC 59.960 50.000 0.00 0.00 45.84 4.02
46 47 2.618045 CCCAACCACTATGTCTTGGTCC 60.618 54.545 0.00 0.00 45.84 4.46
47 48 2.618045 CCAACCACTATGTCTTGGTCCC 60.618 54.545 0.00 0.00 45.84 4.46
48 49 2.305927 CAACCACTATGTCTTGGTCCCT 59.694 50.000 0.00 0.00 45.84 4.20
49 50 2.632537 ACCACTATGTCTTGGTCCCTT 58.367 47.619 0.00 0.00 42.86 3.95
50 51 2.305927 ACCACTATGTCTTGGTCCCTTG 59.694 50.000 0.00 0.00 42.86 3.61
51 52 2.356125 CCACTATGTCTTGGTCCCTTGG 60.356 54.545 0.00 0.00 0.00 3.61
52 53 2.305927 CACTATGTCTTGGTCCCTTGGT 59.694 50.000 0.00 0.00 0.00 3.67
53 54 2.305927 ACTATGTCTTGGTCCCTTGGTG 59.694 50.000 0.00 0.00 0.00 4.17
54 55 1.149101 ATGTCTTGGTCCCTTGGTGT 58.851 50.000 0.00 0.00 0.00 4.16
55 56 0.182537 TGTCTTGGTCCCTTGGTGTG 59.817 55.000 0.00 0.00 0.00 3.82
56 57 0.182775 GTCTTGGTCCCTTGGTGTGT 59.817 55.000 0.00 0.00 0.00 3.72
57 58 0.923358 TCTTGGTCCCTTGGTGTGTT 59.077 50.000 0.00 0.00 0.00 3.32
58 59 1.286553 TCTTGGTCCCTTGGTGTGTTT 59.713 47.619 0.00 0.00 0.00 2.83
59 60 1.408702 CTTGGTCCCTTGGTGTGTTTG 59.591 52.381 0.00 0.00 0.00 2.93
60 61 0.396417 TGGTCCCTTGGTGTGTTTGG 60.396 55.000 0.00 0.00 0.00 3.28
61 62 0.396556 GGTCCCTTGGTGTGTTTGGT 60.397 55.000 0.00 0.00 0.00 3.67
62 63 1.480789 GTCCCTTGGTGTGTTTGGTT 58.519 50.000 0.00 0.00 0.00 3.67
63 64 1.407618 GTCCCTTGGTGTGTTTGGTTC 59.592 52.381 0.00 0.00 0.00 3.62
64 65 1.286553 TCCCTTGGTGTGTTTGGTTCT 59.713 47.619 0.00 0.00 0.00 3.01
65 66 1.408702 CCCTTGGTGTGTTTGGTTCTG 59.591 52.381 0.00 0.00 0.00 3.02
66 67 2.374184 CCTTGGTGTGTTTGGTTCTGA 58.626 47.619 0.00 0.00 0.00 3.27
67 68 2.958355 CCTTGGTGTGTTTGGTTCTGAT 59.042 45.455 0.00 0.00 0.00 2.90
68 69 3.004734 CCTTGGTGTGTTTGGTTCTGATC 59.995 47.826 0.00 0.00 0.00 2.92
69 70 3.289407 TGGTGTGTTTGGTTCTGATCA 57.711 42.857 0.00 0.00 0.00 2.92
70 71 2.948979 TGGTGTGTTTGGTTCTGATCAC 59.051 45.455 0.00 0.00 0.00 3.06
71 72 2.293399 GGTGTGTTTGGTTCTGATCACC 59.707 50.000 0.00 0.00 37.51 4.02
72 73 2.032030 GTGTGTTTGGTTCTGATCACCG 60.032 50.000 0.00 0.00 37.07 4.94
73 74 1.535462 GTGTTTGGTTCTGATCACCGG 59.465 52.381 0.00 0.00 37.07 5.28
74 75 1.165270 GTTTGGTTCTGATCACCGGG 58.835 55.000 6.32 0.00 37.07 5.73
75 76 0.768622 TTTGGTTCTGATCACCGGGT 59.231 50.000 6.32 0.00 37.07 5.28
76 77 0.036164 TTGGTTCTGATCACCGGGTG 59.964 55.000 21.27 21.27 37.07 4.61
77 78 1.078426 GGTTCTGATCACCGGGTGG 60.078 63.158 26.07 10.80 42.84 4.61
78 79 1.550130 GGTTCTGATCACCGGGTGGA 61.550 60.000 26.07 13.00 39.21 4.02
79 80 0.323629 GTTCTGATCACCGGGTGGAA 59.676 55.000 26.07 17.86 39.21 3.53
80 81 0.613260 TTCTGATCACCGGGTGGAAG 59.387 55.000 26.07 19.46 39.21 3.46
81 82 1.221840 CTGATCACCGGGTGGAAGG 59.778 63.158 26.07 11.18 39.21 3.46
82 83 1.537889 TGATCACCGGGTGGAAGGT 60.538 57.895 26.07 8.26 42.34 3.50
86 87 4.912299 ACCGGGTGGAAGGTGGGT 62.912 66.667 6.32 0.00 39.66 4.51
87 88 4.344865 CCGGGTGGAAGGTGGGTG 62.345 72.222 0.00 0.00 37.49 4.61
116 117 2.027285 TCTGCTCGAAATGGATCCACAA 60.027 45.455 18.99 0.00 0.00 3.33
122 123 1.812571 GAAATGGATCCACAAGCACGT 59.187 47.619 18.99 0.00 0.00 4.49
141 142 0.751452 TTGCAATGCAAGCTCACCAA 59.249 45.000 17.55 0.00 43.99 3.67
166 167 0.889638 TCTAGCGCATAGGAGACCCG 60.890 60.000 11.47 0.00 37.58 5.28
172 173 1.068588 CGCATAGGAGACCCGAAATCA 59.931 52.381 0.00 0.00 37.58 2.57
221 2223 6.148315 TGGATTGAGCATCGCAGAAATATTAG 59.852 38.462 0.00 0.00 43.58 1.73
245 2508 8.383318 AGGTATGGATTTTCGAATCTACATTG 57.617 34.615 9.68 0.00 0.00 2.82
246 2509 7.993183 AGGTATGGATTTTCGAATCTACATTGT 59.007 33.333 9.68 0.00 0.00 2.71
247 2510 9.268268 GGTATGGATTTTCGAATCTACATTGTA 57.732 33.333 9.68 0.00 0.00 2.41
258 2521 9.346005 TCGAATCTACATTGTATTACTACTCCA 57.654 33.333 0.00 0.00 0.00 3.86
384 2671 1.953138 CGATCATCGCCAGCTGTCC 60.953 63.158 13.81 2.04 31.14 4.02
386 2673 0.179062 GATCATCGCCAGCTGTCCTT 60.179 55.000 13.81 0.00 0.00 3.36
387 2674 0.254178 ATCATCGCCAGCTGTCCTTT 59.746 50.000 13.81 0.00 0.00 3.11
395 2682 1.671261 CCAGCTGTCCTTTCGTCTCTG 60.671 57.143 13.81 0.00 0.00 3.35
399 2687 1.079057 GTCCTTTCGTCTCTGCCCC 60.079 63.158 0.00 0.00 0.00 5.80
479 2773 0.802494 CGCTTCCTGCCGTTGTTTAT 59.198 50.000 0.00 0.00 38.78 1.40
480 2774 2.004017 CGCTTCCTGCCGTTGTTTATA 58.996 47.619 0.00 0.00 38.78 0.98
481 2775 2.612212 CGCTTCCTGCCGTTGTTTATAT 59.388 45.455 0.00 0.00 38.78 0.86
482 2776 3.064820 CGCTTCCTGCCGTTGTTTATATT 59.935 43.478 0.00 0.00 38.78 1.28
483 2777 4.271533 CGCTTCCTGCCGTTGTTTATATTA 59.728 41.667 0.00 0.00 38.78 0.98
683 2985 1.880340 CGCCAGCACTAGCACTAGC 60.880 63.158 4.58 0.00 45.49 3.42
765 3067 2.124996 CCTTCTGGTCCCCTCCCA 59.875 66.667 0.00 0.00 0.00 4.37
766 3068 1.541368 CCTTCTGGTCCCCTCCCAA 60.541 63.158 0.00 0.00 0.00 4.12
767 3069 1.140134 CCTTCTGGTCCCCTCCCAAA 61.140 60.000 0.00 0.00 0.00 3.28
806 3108 2.997897 GAGCTGGACTCCACCGGT 60.998 66.667 0.00 0.00 39.75 5.28
824 3126 0.384669 GTGCCCCTGCTACTACTACG 59.615 60.000 0.00 0.00 38.71 3.51
878 3186 3.984732 GCTGGGCTGAGGGGGTTT 61.985 66.667 0.00 0.00 0.00 3.27
901 3209 1.078918 CCGGTCTGCTTGCTGATCA 60.079 57.895 12.04 0.00 0.00 2.92
914 3222 3.934962 GATCAGGGGCCTCGGAGC 61.935 72.222 12.22 8.76 0.00 4.70
959 3267 2.126417 CTGTGAGTCGGTCCGTTCGT 62.126 60.000 11.88 0.00 0.00 3.85
969 3277 4.807039 CCGTTCGTCGCGGGGATT 62.807 66.667 6.13 0.00 44.98 3.01
971 3279 2.125832 GTTCGTCGCGGGGATTGA 60.126 61.111 6.13 0.00 0.00 2.57
1074 3606 2.147958 GGTTTTCTGTGTGCGTGGATA 58.852 47.619 0.00 0.00 0.00 2.59
1132 3668 4.148174 GTCTTTTTATTTTCTGGTGCGTGC 59.852 41.667 0.00 0.00 0.00 5.34
1133 3669 2.715737 TTTATTTTCTGGTGCGTGCC 57.284 45.000 0.00 0.00 0.00 5.01
1361 3954 1.806351 CTCGCTGCTGCTCACTCAG 60.806 63.158 14.03 0.00 36.97 3.35
1413 4037 1.598882 GCTAGTAGCATCCAAAGGCC 58.401 55.000 17.47 0.00 41.89 5.19
1471 4285 2.172851 TGTGTTGTTTAGGTAGCCCG 57.827 50.000 0.00 0.00 35.12 6.13
1642 4468 2.110967 CAGCGGTGAGATTGGGCTG 61.111 63.158 9.50 0.00 44.19 4.85
1711 4537 5.755409 TCTCTCATAGCCAGGTTGTAAAA 57.245 39.130 0.00 0.00 0.00 1.52
1745 4571 7.379529 CCTGTTTTGATTGTGACAACAGTATTC 59.620 37.037 0.00 0.00 37.67 1.75
1768 4594 5.036737 CGGGAATATGAAACTGACATTTGC 58.963 41.667 0.00 0.00 0.00 3.68
1952 4799 7.882791 ACCATTATGATCTTGTGTGTACTTTGA 59.117 33.333 0.00 0.00 0.00 2.69
1953 4800 8.896744 CCATTATGATCTTGTGTGTACTTTGAT 58.103 33.333 0.00 0.00 0.00 2.57
1977 4824 0.108186 TACTTGCATCCCGCTGTGAG 60.108 55.000 0.00 0.00 43.06 3.51
1984 4831 2.483013 GCATCCCGCTGTGAGTATGTAA 60.483 50.000 0.00 0.00 37.77 2.41
2154 5004 0.875059 CTTCTGAAGGCCGTGGAAAC 59.125 55.000 9.57 0.00 0.00 2.78
2200 5050 1.607225 TGGCATGGAAGACCCCTTAT 58.393 50.000 0.00 0.00 34.81 1.73
2226 5076 8.565896 TGTGAGTTATAATTTCTCTTGCACAT 57.434 30.769 0.00 0.00 0.00 3.21
2464 5315 4.553323 GCCATATGAATTGCAGGAATGAC 58.447 43.478 3.65 0.00 0.00 3.06
2611 5462 3.990092 TGTCCGTAATGCATATCCACTC 58.010 45.455 0.00 0.00 0.00 3.51
3371 6262 1.280133 CCTGGAATGCTTCAGGTCAGA 59.720 52.381 0.00 0.00 44.03 3.27
3372 6263 2.354259 CTGGAATGCTTCAGGTCAGAC 58.646 52.381 0.00 0.00 0.00 3.51
3373 6264 1.980765 TGGAATGCTTCAGGTCAGACT 59.019 47.619 0.00 0.00 0.00 3.24
3374 6265 2.027745 TGGAATGCTTCAGGTCAGACTC 60.028 50.000 0.00 0.00 0.00 3.36
3377 6268 2.756840 TGCTTCAGGTCAGACTCATG 57.243 50.000 0.00 0.00 0.00 3.07
3378 6269 1.973515 TGCTTCAGGTCAGACTCATGT 59.026 47.619 0.00 0.00 0.00 3.21
3379 6270 2.369860 TGCTTCAGGTCAGACTCATGTT 59.630 45.455 0.00 0.00 0.00 2.71
3380 6271 2.999355 GCTTCAGGTCAGACTCATGTTC 59.001 50.000 0.00 0.00 0.00 3.18
3381 6272 3.306641 GCTTCAGGTCAGACTCATGTTCT 60.307 47.826 0.00 0.00 0.00 3.01
3383 6274 5.649557 CTTCAGGTCAGACTCATGTTCTAG 58.350 45.833 0.00 0.00 0.00 2.43
3384 6275 3.445450 TCAGGTCAGACTCATGTTCTAGC 59.555 47.826 0.00 0.00 0.00 3.42
3385 6276 3.194329 CAGGTCAGACTCATGTTCTAGCA 59.806 47.826 0.00 0.00 0.00 3.49
3386 6277 3.834813 AGGTCAGACTCATGTTCTAGCAA 59.165 43.478 0.00 0.00 0.00 3.91
3388 6279 4.629200 GGTCAGACTCATGTTCTAGCAAAG 59.371 45.833 0.00 0.00 0.00 2.77
4229 7192 5.982356 AGTAAGAAGTCAGATAAGCATGCA 58.018 37.500 21.98 0.00 0.00 3.96
4245 7208 4.454948 CAGACGGTTCTGTGCCAA 57.545 55.556 0.00 0.00 43.95 4.52
4318 7281 6.837992 TCTATAACAACCGTTGCTCAATTTC 58.162 36.000 11.29 0.00 36.52 2.17
4482 7447 2.238395 GAGCCTGGAGAAGAGATTTGGT 59.762 50.000 0.00 0.00 0.00 3.67
4813 8381 9.412460 TGAGATGATCTATTTATTGTTGGCTTT 57.588 29.630 0.00 0.00 0.00 3.51
4913 8487 6.309389 ACAGAAGATATTCTTACCGGGTTT 57.691 37.500 4.31 0.00 36.73 3.27
5066 8640 0.597568 TTTTCAGCAGGCATTGTCCG 59.402 50.000 0.00 0.00 0.00 4.79
5234 8808 0.769247 AGGTAAAACCCGGCTCAGTT 59.231 50.000 0.00 0.00 39.75 3.16
5363 8947 1.271856 TCGCCACTGGTATCCTTGAA 58.728 50.000 0.00 0.00 0.00 2.69
5857 9441 0.034059 GTCACTGGGCCAGATATCCG 59.966 60.000 38.99 18.51 35.18 4.18
5977 9561 7.086376 CCAGATGATCTTGGTTGTAAAAACTG 58.914 38.462 0.00 0.00 0.00 3.16
6565 10507 2.276732 AAGCTTTAGCACTTGAGCCA 57.723 45.000 4.33 0.00 45.16 4.75
6591 10533 1.638070 TGTTGGGCAGGACCATGAATA 59.362 47.619 0.00 0.00 40.91 1.75
6802 10744 3.306364 GGCATGGATACGCTCTCTAACAT 60.306 47.826 0.00 0.00 42.51 2.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.179059 TGCTCGTCAACTTGGCTCAA 60.179 50.000 0.00 0.00 0.00 3.02
1 2 0.179059 TTGCTCGTCAACTTGGCTCA 60.179 50.000 0.00 0.00 0.00 4.26
2 3 1.160137 ATTGCTCGTCAACTTGGCTC 58.840 50.000 0.00 0.00 37.53 4.70
3 4 1.537202 GAATTGCTCGTCAACTTGGCT 59.463 47.619 0.00 0.00 37.53 4.75
4 5 1.266718 TGAATTGCTCGTCAACTTGGC 59.733 47.619 0.00 0.00 37.53 4.52
5 6 2.350772 GGTGAATTGCTCGTCAACTTGG 60.351 50.000 0.00 0.00 37.53 3.61
6 7 2.350772 GGGTGAATTGCTCGTCAACTTG 60.351 50.000 0.00 0.00 37.53 3.16
7 8 1.880027 GGGTGAATTGCTCGTCAACTT 59.120 47.619 0.00 0.00 37.53 2.66
8 9 1.202758 TGGGTGAATTGCTCGTCAACT 60.203 47.619 0.00 0.00 37.53 3.16
9 10 1.234821 TGGGTGAATTGCTCGTCAAC 58.765 50.000 0.00 0.00 37.53 3.18
10 11 1.606668 GTTGGGTGAATTGCTCGTCAA 59.393 47.619 0.00 0.00 39.32 3.18
11 12 1.234821 GTTGGGTGAATTGCTCGTCA 58.765 50.000 0.00 0.00 0.00 4.35
12 13 0.521735 GGTTGGGTGAATTGCTCGTC 59.478 55.000 0.00 0.00 0.00 4.20
13 14 0.179004 TGGTTGGGTGAATTGCTCGT 60.179 50.000 0.00 0.00 0.00 4.18
14 15 0.240945 GTGGTTGGGTGAATTGCTCG 59.759 55.000 0.00 0.00 0.00 5.03
15 16 1.620822 AGTGGTTGGGTGAATTGCTC 58.379 50.000 0.00 0.00 0.00 4.26
16 17 2.969821 TAGTGGTTGGGTGAATTGCT 57.030 45.000 0.00 0.00 0.00 3.91
17 18 2.825532 ACATAGTGGTTGGGTGAATTGC 59.174 45.455 0.00 0.00 0.00 3.56
18 19 4.335416 AGACATAGTGGTTGGGTGAATTG 58.665 43.478 0.00 0.00 0.00 2.32
19 20 4.657814 AGACATAGTGGTTGGGTGAATT 57.342 40.909 0.00 0.00 0.00 2.17
20 21 4.335416 CAAGACATAGTGGTTGGGTGAAT 58.665 43.478 0.00 0.00 0.00 2.57
21 22 3.497763 CCAAGACATAGTGGTTGGGTGAA 60.498 47.826 5.78 0.00 34.05 3.18
22 23 2.039746 CCAAGACATAGTGGTTGGGTGA 59.960 50.000 5.78 0.00 34.05 4.02
23 24 2.224769 ACCAAGACATAGTGGTTGGGTG 60.225 50.000 14.20 0.00 46.17 4.61
24 25 2.062636 ACCAAGACATAGTGGTTGGGT 58.937 47.619 14.20 0.00 46.17 4.51
25 26 2.879103 ACCAAGACATAGTGGTTGGG 57.121 50.000 14.20 0.00 46.17 4.12
30 31 2.356125 CCAAGGGACCAAGACATAGTGG 60.356 54.545 0.00 0.00 41.00 4.00
31 32 2.305927 ACCAAGGGACCAAGACATAGTG 59.694 50.000 0.00 0.00 0.00 2.74
32 33 2.305927 CACCAAGGGACCAAGACATAGT 59.694 50.000 0.00 0.00 0.00 2.12
33 34 2.305927 ACACCAAGGGACCAAGACATAG 59.694 50.000 0.00 0.00 0.00 2.23
34 35 2.039746 CACACCAAGGGACCAAGACATA 59.960 50.000 0.00 0.00 0.00 2.29
35 36 1.149101 ACACCAAGGGACCAAGACAT 58.851 50.000 0.00 0.00 0.00 3.06
36 37 0.182537 CACACCAAGGGACCAAGACA 59.817 55.000 0.00 0.00 0.00 3.41
37 38 0.182775 ACACACCAAGGGACCAAGAC 59.817 55.000 0.00 0.00 0.00 3.01
38 39 0.923358 AACACACCAAGGGACCAAGA 59.077 50.000 0.00 0.00 0.00 3.02
39 40 1.408702 CAAACACACCAAGGGACCAAG 59.591 52.381 0.00 0.00 0.00 3.61
40 41 1.479709 CAAACACACCAAGGGACCAA 58.520 50.000 0.00 0.00 0.00 3.67
41 42 0.396417 CCAAACACACCAAGGGACCA 60.396 55.000 0.00 0.00 0.00 4.02
42 43 0.396556 ACCAAACACACCAAGGGACC 60.397 55.000 0.00 0.00 0.00 4.46
43 44 1.407618 GAACCAAACACACCAAGGGAC 59.592 52.381 0.00 0.00 0.00 4.46
44 45 1.286553 AGAACCAAACACACCAAGGGA 59.713 47.619 0.00 0.00 0.00 4.20
45 46 1.408702 CAGAACCAAACACACCAAGGG 59.591 52.381 0.00 0.00 0.00 3.95
46 47 2.374184 TCAGAACCAAACACACCAAGG 58.626 47.619 0.00 0.00 0.00 3.61
47 48 3.631686 TGATCAGAACCAAACACACCAAG 59.368 43.478 0.00 0.00 0.00 3.61
48 49 3.380004 GTGATCAGAACCAAACACACCAA 59.620 43.478 0.00 0.00 0.00 3.67
49 50 2.948979 GTGATCAGAACCAAACACACCA 59.051 45.455 0.00 0.00 0.00 4.17
50 51 2.293399 GGTGATCAGAACCAAACACACC 59.707 50.000 0.00 0.00 39.38 4.16
51 52 2.032030 CGGTGATCAGAACCAAACACAC 60.032 50.000 0.00 0.00 37.57 3.82
52 53 2.217750 CGGTGATCAGAACCAAACACA 58.782 47.619 0.00 0.00 37.57 3.72
53 54 1.535462 CCGGTGATCAGAACCAAACAC 59.465 52.381 0.00 0.00 37.57 3.32
54 55 1.544537 CCCGGTGATCAGAACCAAACA 60.545 52.381 0.00 0.00 37.57 2.83
55 56 1.165270 CCCGGTGATCAGAACCAAAC 58.835 55.000 0.00 0.00 37.57 2.93
56 57 0.768622 ACCCGGTGATCAGAACCAAA 59.231 50.000 0.00 0.00 37.57 3.28
57 58 0.036164 CACCCGGTGATCAGAACCAA 59.964 55.000 12.68 0.00 37.57 3.67
58 59 1.676968 CACCCGGTGATCAGAACCA 59.323 57.895 12.68 0.00 37.57 3.67
59 60 1.078426 CCACCCGGTGATCAGAACC 60.078 63.158 19.81 0.00 35.23 3.62
60 61 0.323629 TTCCACCCGGTGATCAGAAC 59.676 55.000 19.81 0.00 35.23 3.01
61 62 0.613260 CTTCCACCCGGTGATCAGAA 59.387 55.000 19.81 12.16 35.23 3.02
62 63 1.264749 CCTTCCACCCGGTGATCAGA 61.265 60.000 19.81 4.62 35.23 3.27
63 64 1.221840 CCTTCCACCCGGTGATCAG 59.778 63.158 19.81 10.76 35.23 2.90
64 65 1.537889 ACCTTCCACCCGGTGATCA 60.538 57.895 19.81 0.00 35.23 2.92
65 66 3.400188 ACCTTCCACCCGGTGATC 58.600 61.111 19.81 0.00 35.23 2.92
69 70 4.912299 ACCCACCTTCCACCCGGT 62.912 66.667 0.00 0.00 0.00 5.28
70 71 4.344865 CACCCACCTTCCACCCGG 62.345 72.222 0.00 0.00 0.00 5.73
71 72 2.218454 TACACCCACCTTCCACCCG 61.218 63.158 0.00 0.00 0.00 5.28
72 73 1.377612 GTACACCCACCTTCCACCC 59.622 63.158 0.00 0.00 0.00 4.61
73 74 0.475044 TTGTACACCCACCTTCCACC 59.525 55.000 0.00 0.00 0.00 4.61
74 75 1.951602 GTTTGTACACCCACCTTCCAC 59.048 52.381 0.00 0.00 0.00 4.02
75 76 1.847737 AGTTTGTACACCCACCTTCCA 59.152 47.619 0.00 0.00 0.00 3.53
76 77 2.105993 AGAGTTTGTACACCCACCTTCC 59.894 50.000 0.00 0.00 0.00 3.46
77 78 3.139077 CAGAGTTTGTACACCCACCTTC 58.861 50.000 0.00 0.00 0.00 3.46
78 79 2.748465 GCAGAGTTTGTACACCCACCTT 60.748 50.000 0.00 0.00 0.00 3.50
79 80 1.202770 GCAGAGTTTGTACACCCACCT 60.203 52.381 0.00 0.00 0.00 4.00
80 81 1.202770 AGCAGAGTTTGTACACCCACC 60.203 52.381 0.00 0.00 0.00 4.61
81 82 2.143925 GAGCAGAGTTTGTACACCCAC 58.856 52.381 0.00 0.00 0.00 4.61
82 83 1.270094 CGAGCAGAGTTTGTACACCCA 60.270 52.381 0.00 0.00 0.00 4.51
83 84 1.000506 TCGAGCAGAGTTTGTACACCC 59.999 52.381 0.00 0.00 0.00 4.61
84 85 2.433868 TCGAGCAGAGTTTGTACACC 57.566 50.000 0.00 0.00 0.00 4.16
85 86 4.377431 CCATTTCGAGCAGAGTTTGTACAC 60.377 45.833 0.00 0.00 0.00 2.90
86 87 3.745975 CCATTTCGAGCAGAGTTTGTACA 59.254 43.478 0.00 0.00 0.00 2.90
87 88 3.994392 TCCATTTCGAGCAGAGTTTGTAC 59.006 43.478 0.00 0.00 0.00 2.90
116 117 1.662446 GCTTGCATTGCAACGTGCT 60.662 52.632 19.77 0.00 43.99 4.40
122 123 0.751452 TTGGTGAGCTTGCATTGCAA 59.249 45.000 21.97 21.97 46.80 4.08
139 140 1.588404 CCTATGCGCTAGACGTTGTTG 59.412 52.381 9.73 0.00 46.11 3.33
141 142 1.065701 CTCCTATGCGCTAGACGTTGT 59.934 52.381 9.73 0.00 46.11 3.32
183 2185 3.938963 GCTCAATCCACGATGTTCCTTTA 59.061 43.478 0.00 0.00 0.00 1.85
188 2190 2.033407 CGATGCTCAATCCACGATGTTC 60.033 50.000 0.00 0.00 30.80 3.18
191 2193 0.234106 GCGATGCTCAATCCACGATG 59.766 55.000 0.00 0.00 30.80 3.84
221 2223 8.154649 ACAATGTAGATTCGAAAATCCATACC 57.845 34.615 0.00 0.00 41.97 2.73
239 2502 9.961265 CGAGAAATGGAGTAGTAATACAATGTA 57.039 33.333 2.81 0.00 0.00 2.29
240 2503 8.692710 TCGAGAAATGGAGTAGTAATACAATGT 58.307 33.333 2.81 0.00 0.00 2.71
241 2504 9.529325 TTCGAGAAATGGAGTAGTAATACAATG 57.471 33.333 2.81 0.00 0.00 2.82
249 2512 8.755977 ACCTTTTATTCGAGAAATGGAGTAGTA 58.244 33.333 22.85 0.00 35.61 1.82
250 2513 7.549488 CACCTTTTATTCGAGAAATGGAGTAGT 59.451 37.037 22.85 7.13 35.61 2.73
251 2514 7.466050 GCACCTTTTATTCGAGAAATGGAGTAG 60.466 40.741 22.85 14.57 35.61 2.57
253 2516 5.123979 GCACCTTTTATTCGAGAAATGGAGT 59.876 40.000 22.85 8.10 35.61 3.85
254 2517 5.123820 TGCACCTTTTATTCGAGAAATGGAG 59.876 40.000 22.85 18.46 35.61 3.86
255 2518 5.007034 TGCACCTTTTATTCGAGAAATGGA 58.993 37.500 22.85 8.17 35.61 3.41
256 2519 5.309323 TGCACCTTTTATTCGAGAAATGG 57.691 39.130 17.97 17.97 37.21 3.16
257 2520 7.028962 TCATTGCACCTTTTATTCGAGAAATG 58.971 34.615 0.00 0.00 0.00 2.32
258 2521 7.156876 TCATTGCACCTTTTATTCGAGAAAT 57.843 32.000 0.00 0.00 0.00 2.17
259 2522 6.567687 TCATTGCACCTTTTATTCGAGAAA 57.432 33.333 0.00 0.00 0.00 2.52
384 2671 1.078848 CCAGGGGCAGAGACGAAAG 60.079 63.158 0.00 0.00 0.00 2.62
683 2985 4.111016 TCCGTCCGCGCACTAGTG 62.111 66.667 18.93 18.93 36.67 2.74
806 3108 0.754217 CCGTAGTAGTAGCAGGGGCA 60.754 60.000 0.00 0.00 44.61 5.36
815 3117 2.901840 CCCCGCGCCGTAGTAGTA 60.902 66.667 0.00 0.00 0.00 1.82
892 3200 3.001514 GAGGCCCCTGATCAGCAA 58.998 61.111 17.76 0.00 0.00 3.91
967 3275 2.586792 GCGAGCTCACCCCTCAAT 59.413 61.111 15.40 0.00 0.00 2.57
968 3276 4.069232 CGCGAGCTCACCCCTCAA 62.069 66.667 15.40 0.00 0.00 3.02
1074 3606 1.971357 AGACCAATCGCCGGATTATCT 59.029 47.619 5.05 0.80 40.90 1.98
1413 4037 1.396301 GTTGAATTCTCAGCTGCTCCG 59.604 52.381 9.47 0.00 31.69 4.63
1471 4285 3.918253 TTCATCCCCACGTGCTGGC 62.918 63.158 10.91 0.00 39.01 4.85
1642 4468 3.319137 TCTCCACTGTCATACTTGTGC 57.681 47.619 0.00 0.00 0.00 4.57
1687 4513 5.755409 TTACAACCTGGCTATGAGAGAAA 57.245 39.130 0.00 0.00 0.00 2.52
1711 4537 5.294060 GTCACAATCAAAACAGGTTGCAATT 59.706 36.000 0.59 0.00 0.00 2.32
1745 4571 5.036737 GCAAATGTCAGTTTCATATTCCCG 58.963 41.667 0.00 0.00 0.00 5.14
1768 4594 2.926200 CCTGTGCAGACATAGACGAAAG 59.074 50.000 0.02 0.00 37.20 2.62
1847 4689 2.401766 GGATGTCCACGCTTGCCAG 61.402 63.158 0.00 0.00 35.64 4.85
1970 4817 8.251750 TGAAACAACTATTACATACTCACAGC 57.748 34.615 0.00 0.00 0.00 4.40
1977 4824 9.708222 CAGAAGCATGAAACAACTATTACATAC 57.292 33.333 0.00 0.00 0.00 2.39
2052 4899 1.063806 CTCTCTCTTTCCACGCAACG 58.936 55.000 0.00 0.00 0.00 4.10
2154 5004 1.127397 GTGCATGCATCGATATCACCG 59.873 52.381 25.64 0.00 0.00 4.94
2200 5050 8.389779 TGTGCAAGAGAAATTATAACTCACAA 57.610 30.769 0.00 0.00 33.69 3.33
2226 5076 6.455647 AGAACAACACGAAGATGACTAATGA 58.544 36.000 0.00 0.00 0.00 2.57
2232 5082 4.551388 AGAGAGAACAACACGAAGATGAC 58.449 43.478 0.00 0.00 0.00 3.06
2325 5176 4.326826 TCTCTGTTCAAATGCAGGGTTAG 58.673 43.478 0.00 0.00 34.93 2.34
2414 5265 4.290155 ACAAAAGTTATTGCTGCAAGTCG 58.710 39.130 20.72 5.67 35.30 4.18
2464 5315 2.097038 CAGAGGCTGGCGAGTTTCG 61.097 63.158 0.00 0.00 43.89 3.46
2611 5462 2.159043 ACATATCACGGACAGAAGCCAG 60.159 50.000 0.00 0.00 0.00 4.85
3371 6262 6.115448 AGTAACCTTTGCTAGAACATGAGT 57.885 37.500 0.00 0.00 0.00 3.41
3372 6263 6.650807 TCAAGTAACCTTTGCTAGAACATGAG 59.349 38.462 0.00 0.00 0.00 2.90
3373 6264 6.530120 TCAAGTAACCTTTGCTAGAACATGA 58.470 36.000 0.00 0.00 0.00 3.07
3374 6265 6.801539 TCAAGTAACCTTTGCTAGAACATG 57.198 37.500 0.00 0.00 0.00 3.21
3377 6268 9.216117 TCTTAATCAAGTAACCTTTGCTAGAAC 57.784 33.333 0.00 0.00 33.20 3.01
3378 6269 9.436957 CTCTTAATCAAGTAACCTTTGCTAGAA 57.563 33.333 0.00 0.00 33.20 2.10
3379 6270 7.549488 GCTCTTAATCAAGTAACCTTTGCTAGA 59.451 37.037 0.00 0.00 33.20 2.43
3380 6271 7.550906 AGCTCTTAATCAAGTAACCTTTGCTAG 59.449 37.037 0.00 0.00 33.20 3.42
3381 6272 7.334421 CAGCTCTTAATCAAGTAACCTTTGCTA 59.666 37.037 0.00 0.00 33.20 3.49
3383 6274 6.317857 CAGCTCTTAATCAAGTAACCTTTGC 58.682 40.000 0.00 0.00 33.20 3.68
3384 6275 6.655003 TCCAGCTCTTAATCAAGTAACCTTTG 59.345 38.462 0.00 0.00 33.20 2.77
3385 6276 6.779860 TCCAGCTCTTAATCAAGTAACCTTT 58.220 36.000 0.00 0.00 33.20 3.11
3386 6277 6.374417 TCCAGCTCTTAATCAAGTAACCTT 57.626 37.500 0.00 0.00 33.20 3.50
3388 6279 6.481644 CAGATCCAGCTCTTAATCAAGTAACC 59.518 42.308 0.00 0.00 33.20 2.85
3556 6478 0.321564 TCTTGTGGTGCTGGAATCCG 60.322 55.000 0.00 0.00 0.00 4.18
4016 6943 2.816087 CTGCAGCAAACAGATACAGGTT 59.184 45.455 0.00 0.00 37.32 3.50
4229 7192 0.108585 ACATTGGCACAGAACCGTCT 59.891 50.000 0.00 0.00 42.39 4.18
4318 7281 6.459257 CTGACTAGCAACTACAGACAAAAG 57.541 41.667 0.00 0.00 0.00 2.27
4482 7447 2.547218 GGCTACGAAAACACTGGACTGA 60.547 50.000 0.00 0.00 0.00 3.41
4828 8402 6.042777 CAGGAAGATTACAGATACGAAGCAA 58.957 40.000 0.00 0.00 0.00 3.91
4829 8403 5.127194 ACAGGAAGATTACAGATACGAAGCA 59.873 40.000 0.00 0.00 0.00 3.91
4913 8487 2.822758 GCCGCGTGCATGCATCTTA 61.823 57.895 29.23 0.00 40.77 2.10
4937 8511 4.070716 GCTTAGGCATGCAGTAGATTGAT 58.929 43.478 21.36 0.00 38.54 2.57
5066 8640 2.434336 TCCGCCATAGCCATACCATATC 59.566 50.000 0.00 0.00 34.57 1.63
5234 8808 3.766676 TTTGTACACGCAAGAGCAAAA 57.233 38.095 0.00 0.00 42.27 2.44
5280 8854 7.155655 TGTTGCTAATCTGCATTTCAATGTA 57.844 32.000 1.59 0.00 42.96 2.29
5363 8947 1.202927 CCAACACCACTCCACCTCATT 60.203 52.381 0.00 0.00 0.00 2.57
5450 9034 1.645710 TCAGGAGACCTTGGAAGACC 58.354 55.000 0.00 0.00 0.00 3.85
5977 9561 9.774413 AATACTGCATATTAACACTAAGTACCC 57.226 33.333 0.00 0.00 31.28 3.69
6101 9685 8.442632 TCAAGAAATACAATCCTGCAAGATAG 57.557 34.615 0.00 0.00 34.07 2.08
6297 10237 2.799562 CGCGTCTCCAAGATCTTGCATA 60.800 50.000 27.01 14.60 39.16 3.14
6565 10507 0.324645 GGTCCTGCCCAACATCCATT 60.325 55.000 0.00 0.00 0.00 3.16
6802 10744 2.616001 GCCACTGAACGGGGTAAATACA 60.616 50.000 0.00 0.00 0.00 2.29


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.