Multiple sequence alignment - TraesCS5D01G469300

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G469300 chr5D 100.000 2846 0 0 1 2846 510466735 510463890 0.000000e+00 5256.0
1 TraesCS5D01G469300 chr5D 80.749 1309 224 23 744 2039 510904588 510905881 0.000000e+00 996.0
2 TraesCS5D01G469300 chr5D 77.849 1246 228 33 744 1963 510599612 510598389 0.000000e+00 728.0
3 TraesCS5D01G469300 chr5D 80.689 813 135 18 1240 2041 510647004 510646203 1.870000e-171 612.0
4 TraesCS5D01G469300 chr5D 81.013 395 65 7 744 1134 510647470 510647082 3.560000e-79 305.0
5 TraesCS5D01G469300 chr5D 78.426 343 64 6 1618 1951 510172367 510172026 6.180000e-52 215.0
6 TraesCS5D01G469300 chr5B 93.534 2258 122 14 1 2248 641247803 641245560 0.000000e+00 3339.0
7 TraesCS5D01G469300 chr5B 80.538 1300 226 21 744 2031 641805370 641806654 0.000000e+00 974.0
8 TraesCS5D01G469300 chr5B 79.879 1317 221 36 744 2039 641428251 641426958 0.000000e+00 924.0
9 TraesCS5D01G469300 chr5B 80.292 1233 199 32 744 1952 641412960 641411748 0.000000e+00 891.0
10 TraesCS5D01G469300 chr5B 87.234 94 12 0 1910 2003 641406154 641406061 1.080000e-19 108.0
11 TraesCS5D01G469300 chr5A 88.068 1408 133 24 1 1394 638642567 638641181 0.000000e+00 1637.0
12 TraesCS5D01G469300 chr5A 80.342 1287 207 35 744 2008 638812408 638811146 0.000000e+00 933.0
13 TraesCS5D01G469300 chr5A 80.015 1291 232 20 744 2022 639098446 639099722 0.000000e+00 931.0
14 TraesCS5D01G469300 chr5A 82.857 560 87 5 1397 1948 638607443 638606885 7.080000e-136 494.0
15 TraesCS5D01G469300 chr3D 96.063 254 10 0 2593 2846 146280483 146280230 5.670000e-112 414.0
16 TraesCS5D01G469300 chr3D 95.669 254 11 0 2593 2846 123306319 123306066 2.640000e-110 409.0
17 TraesCS5D01G469300 chr3D 94.882 254 13 0 2593 2846 278444204 278443951 5.710000e-107 398.0
18 TraesCS5D01G469300 chr3D 94.882 254 13 0 2593 2846 278445631 278445378 5.710000e-107 398.0
19 TraesCS5D01G469300 chr3D 85.915 284 21 4 2319 2592 407741889 407741615 4.640000e-73 285.0
20 TraesCS5D01G469300 chr7D 94.902 255 13 0 2592 2846 477113842 477113588 1.590000e-107 399.0
21 TraesCS5D01G469300 chr7D 93.798 258 16 0 2586 2843 20410036 20410293 3.440000e-104 388.0
22 TraesCS5D01G469300 chr2A 95.219 251 12 0 2593 2843 526341627 526341877 5.710000e-107 398.0
23 TraesCS5D01G469300 chr2D 94.488 254 14 0 2593 2846 166139491 166139238 2.660000e-105 392.0
24 TraesCS5D01G469300 chr6D 93.798 258 16 0 2586 2843 100352530 100352787 3.440000e-104 388.0
25 TraesCS5D01G469300 chr4A 87.636 275 24 6 2319 2592 6878044 6877779 7.660000e-81 311.0
26 TraesCS5D01G469300 chr4A 87.636 275 24 6 2319 2592 6884324 6884059 7.660000e-81 311.0
27 TraesCS5D01G469300 chr1D 83.582 67 11 0 2486 2552 451780054 451779988 2.370000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G469300 chr5D 510463890 510466735 2845 True 5256.0 5256 100.000 1 2846 1 chr5D.!!$R2 2845
1 TraesCS5D01G469300 chr5D 510904588 510905881 1293 False 996.0 996 80.749 744 2039 1 chr5D.!!$F1 1295
2 TraesCS5D01G469300 chr5D 510598389 510599612 1223 True 728.0 728 77.849 744 1963 1 chr5D.!!$R3 1219
3 TraesCS5D01G469300 chr5D 510646203 510647470 1267 True 458.5 612 80.851 744 2041 2 chr5D.!!$R4 1297
4 TraesCS5D01G469300 chr5B 641245560 641247803 2243 True 3339.0 3339 93.534 1 2248 1 chr5B.!!$R1 2247
5 TraesCS5D01G469300 chr5B 641805370 641806654 1284 False 974.0 974 80.538 744 2031 1 chr5B.!!$F1 1287
6 TraesCS5D01G469300 chr5B 641426958 641428251 1293 True 924.0 924 79.879 744 2039 1 chr5B.!!$R4 1295
7 TraesCS5D01G469300 chr5B 641411748 641412960 1212 True 891.0 891 80.292 744 1952 1 chr5B.!!$R3 1208
8 TraesCS5D01G469300 chr5A 638641181 638642567 1386 True 1637.0 1637 88.068 1 1394 1 chr5A.!!$R2 1393
9 TraesCS5D01G469300 chr5A 638811146 638812408 1262 True 933.0 933 80.342 744 2008 1 chr5A.!!$R3 1264
10 TraesCS5D01G469300 chr5A 639098446 639099722 1276 False 931.0 931 80.015 744 2022 1 chr5A.!!$F1 1278
11 TraesCS5D01G469300 chr5A 638606885 638607443 558 True 494.0 494 82.857 1397 1948 1 chr5A.!!$R1 551
12 TraesCS5D01G469300 chr3D 278443951 278445631 1680 True 398.0 398 94.882 2593 2846 2 chr3D.!!$R4 253

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
372 380 0.387202 TTTTGGGTGCAATGGTGACG 59.613 50.0 0.0 0.0 0.0 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2283 2336 0.034198 TCCGTTCCGATGTGCTTTCA 59.966 50.0 0.0 0.0 0.0 2.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
61 62 2.432628 CCTCGTTCGCGCTTTCCT 60.433 61.111 5.56 0.00 41.05 3.36
68 69 3.181967 CGCGCTTTCCTCCTCGTG 61.182 66.667 5.56 0.00 0.00 4.35
114 115 1.452833 GAGTCCTCAGCAATGGCCC 60.453 63.158 0.00 0.00 42.56 5.80
150 152 2.820037 CTTTTCTCCTCGGGCGCC 60.820 66.667 21.18 21.18 0.00 6.53
198 200 2.609610 CTGGTTCTTCCCCCGGGA 60.610 66.667 26.32 0.00 43.52 5.14
248 250 1.115467 AGCTCCTCGTATGAACTGGG 58.885 55.000 0.00 0.00 0.00 4.45
249 251 1.112113 GCTCCTCGTATGAACTGGGA 58.888 55.000 0.00 0.00 0.00 4.37
250 252 1.067821 GCTCCTCGTATGAACTGGGAG 59.932 57.143 11.81 11.81 41.21 4.30
274 276 0.604578 CCCGTTTTCCCACTCGTCTA 59.395 55.000 0.00 0.00 0.00 2.59
276 278 1.334054 CGTTTTCCCACTCGTCTACG 58.666 55.000 0.00 0.00 41.45 3.51
278 280 2.095768 CGTTTTCCCACTCGTCTACGTA 60.096 50.000 2.02 0.00 40.80 3.57
284 292 1.202043 CCACTCGTCTACGTACTGCAG 60.202 57.143 13.48 13.48 40.80 4.41
287 295 3.008330 ACTCGTCTACGTACTGCAGAAT 58.992 45.455 23.35 0.27 40.80 2.40
349 357 1.334869 CAGCAGCGTTCCTTTGTCTTT 59.665 47.619 0.00 0.00 0.00 2.52
372 380 0.387202 TTTTGGGTGCAATGGTGACG 59.613 50.000 0.00 0.00 0.00 4.35
376 384 2.690778 GGTGCAATGGTGACGCCTC 61.691 63.158 6.60 0.00 38.35 4.70
413 432 2.541346 CCATGCGGCATAGCTATAATCG 59.459 50.000 16.21 11.30 38.13 3.34
507 526 0.685785 CCTCAGTCTCTGGCTGCCTA 60.686 60.000 21.03 7.18 34.21 3.93
563 582 6.655078 ACCTATGTTTTGAGTTTGCATTCT 57.345 33.333 0.00 0.00 0.00 2.40
565 584 7.593825 ACCTATGTTTTGAGTTTGCATTCTAC 58.406 34.615 0.00 0.00 0.00 2.59
623 644 5.016173 AGCTTTTCTTACATGTTGGGCATA 58.984 37.500 2.30 0.00 35.74 3.14
728 750 3.644966 TTATGTAACCCAAGCAGGAGG 57.355 47.619 0.00 0.00 41.22 4.30
733 755 1.668826 AACCCAAGCAGGAGGTATCA 58.331 50.000 0.00 0.00 41.22 2.15
798 821 2.490991 GTACCGCTGAAGTCCTTTTGT 58.509 47.619 0.00 0.00 0.00 2.83
1192 1218 3.327464 TCCATCATGGTCTCAACACTTCA 59.673 43.478 2.79 0.00 39.03 3.02
1226 1252 0.037303 CAGTGCCAGTCTTCCATGGT 59.963 55.000 12.58 0.00 38.91 3.55
1491 1523 1.423541 TGTAGTGGGTGTCTTTGCCAT 59.576 47.619 0.00 0.00 0.00 4.40
1540 1572 5.920193 ACAGGAATTTGATGGTTGTATGG 57.080 39.130 0.00 0.00 0.00 2.74
1564 1596 1.202348 GGATTTGGAGTTTGGAAGGCG 59.798 52.381 0.00 0.00 0.00 5.52
1566 1598 1.460273 TTTGGAGTTTGGAAGGCGCC 61.460 55.000 21.89 21.89 0.00 6.53
1567 1599 2.282180 GGAGTTTGGAAGGCGCCA 60.282 61.111 31.54 4.11 35.78 5.69
1570 1602 2.050442 GTTTGGAAGGCGCCAACG 60.050 61.111 31.54 0.00 46.99 4.10
1674 1706 8.690203 TTTGGTATTTCGATTATGACATCCAT 57.310 30.769 0.00 0.00 39.25 3.41
1708 1740 6.517013 TGGAGAGAGAGCTAGTTATCCTTA 57.483 41.667 0.00 0.00 0.00 2.69
1731 1766 9.880064 CTTATTGACAGAATTGATCATAAGCTG 57.120 33.333 0.00 5.13 0.00 4.24
1747 1782 6.589139 TCATAAGCTGATCTCATTTAGCATCG 59.411 38.462 3.61 0.00 38.59 3.84
2010 2063 2.673775 TTGGCACTTCTCATTTCCCA 57.326 45.000 0.00 0.00 0.00 4.37
2139 2192 5.181748 ACTCCTGTAATCTTGTCATGCTTC 58.818 41.667 0.00 0.00 0.00 3.86
2146 2199 2.951726 TCTTGTCATGCTTCAGTCTCG 58.048 47.619 0.00 0.00 0.00 4.04
2155 2208 5.979517 TCATGCTTCAGTCTCGTGTTATATG 59.020 40.000 0.00 0.00 0.00 1.78
2169 2222 4.705023 GTGTTATATGGGAGTTGCTTTGGT 59.295 41.667 0.00 0.00 0.00 3.67
2171 2224 6.376018 GTGTTATATGGGAGTTGCTTTGGTAA 59.624 38.462 0.00 0.00 0.00 2.85
2175 2228 3.366396 TGGGAGTTGCTTTGGTAAAACA 58.634 40.909 0.00 0.00 0.00 2.83
2178 2231 5.179533 GGGAGTTGCTTTGGTAAAACAAAA 58.820 37.500 0.00 0.00 39.60 2.44
2182 2235 5.580691 AGTTGCTTTGGTAAAACAAAAGCTC 59.419 36.000 24.76 18.96 39.60 4.09
2185 2238 5.523188 TGCTTTGGTAAAACAAAAGCTCATG 59.477 36.000 24.76 0.00 39.60 3.07
2197 2250 5.182001 ACAAAAGCTCATGTGGTAGAATCAC 59.818 40.000 3.73 0.00 35.82 3.06
2199 2252 2.760650 AGCTCATGTGGTAGAATCACGA 59.239 45.455 0.00 0.00 37.91 4.35
2203 2256 2.309528 TGTGGTAGAATCACGATGCC 57.690 50.000 0.00 0.00 37.91 4.40
2204 2257 1.831106 TGTGGTAGAATCACGATGCCT 59.169 47.619 0.00 0.00 37.91 4.75
2205 2258 2.205074 GTGGTAGAATCACGATGCCTG 58.795 52.381 0.00 0.00 0.00 4.85
2206 2259 2.107366 TGGTAGAATCACGATGCCTGA 58.893 47.619 0.00 0.00 0.00 3.86
2207 2260 2.499693 TGGTAGAATCACGATGCCTGAA 59.500 45.455 0.00 0.00 0.00 3.02
2208 2261 3.126831 GGTAGAATCACGATGCCTGAAG 58.873 50.000 0.00 0.00 0.00 3.02
2209 2262 2.322355 AGAATCACGATGCCTGAAGG 57.678 50.000 0.00 0.00 38.53 3.46
2222 2275 4.101114 TGCCTGAAGGTGAAGTATTAGGA 58.899 43.478 0.00 0.00 37.57 2.94
2226 2279 5.366768 CCTGAAGGTGAAGTATTAGGATCCA 59.633 44.000 15.82 0.00 0.00 3.41
2242 2295 0.880278 TCCACAGCTGCAAACGAGTC 60.880 55.000 15.27 0.00 0.00 3.36
2248 2301 2.543848 CAGCTGCAAACGAGTCTGTAAA 59.456 45.455 0.00 0.00 0.00 2.01
2249 2302 3.002246 CAGCTGCAAACGAGTCTGTAAAA 59.998 43.478 0.00 0.00 0.00 1.52
2250 2303 3.248602 AGCTGCAAACGAGTCTGTAAAAG 59.751 43.478 1.02 0.00 0.00 2.27
2251 2304 3.545633 CTGCAAACGAGTCTGTAAAAGC 58.454 45.455 0.00 0.00 0.00 3.51
2252 2305 2.939756 TGCAAACGAGTCTGTAAAAGCA 59.060 40.909 0.00 0.00 0.00 3.91
2253 2306 3.002246 TGCAAACGAGTCTGTAAAAGCAG 59.998 43.478 0.00 0.00 37.81 4.24
2254 2307 3.247648 GCAAACGAGTCTGTAAAAGCAGA 59.752 43.478 0.00 0.00 42.56 4.26
2255 2308 4.609336 GCAAACGAGTCTGTAAAAGCAGAG 60.609 45.833 0.00 0.00 45.03 3.35
2256 2309 2.678324 ACGAGTCTGTAAAAGCAGAGC 58.322 47.619 0.00 0.00 45.03 4.09
2257 2310 2.297597 ACGAGTCTGTAAAAGCAGAGCT 59.702 45.455 0.00 0.00 45.03 4.09
2268 2321 1.484038 AGCAGAGCTTTCTCGATCCT 58.516 50.000 0.00 0.00 44.02 3.24
2269 2322 2.660572 AGCAGAGCTTTCTCGATCCTA 58.339 47.619 0.00 0.00 44.02 2.94
2270 2323 3.230134 AGCAGAGCTTTCTCGATCCTAT 58.770 45.455 0.00 0.00 44.02 2.57
2271 2324 3.255642 AGCAGAGCTTTCTCGATCCTATC 59.744 47.826 0.00 0.00 44.02 2.08
2272 2325 3.005261 GCAGAGCTTTCTCGATCCTATCA 59.995 47.826 0.00 0.00 44.02 2.15
2273 2326 4.797471 CAGAGCTTTCTCGATCCTATCAG 58.203 47.826 0.00 0.00 44.02 2.90
2274 2327 4.518590 CAGAGCTTTCTCGATCCTATCAGA 59.481 45.833 0.00 0.00 44.02 3.27
2275 2328 4.518970 AGAGCTTTCTCGATCCTATCAGAC 59.481 45.833 0.00 0.00 44.02 3.51
2276 2329 4.211125 AGCTTTCTCGATCCTATCAGACA 58.789 43.478 0.00 0.00 0.00 3.41
2277 2330 4.278170 AGCTTTCTCGATCCTATCAGACAG 59.722 45.833 0.00 0.00 0.00 3.51
2278 2331 4.545610 CTTTCTCGATCCTATCAGACAGC 58.454 47.826 0.00 0.00 0.00 4.40
2279 2332 3.214696 TCTCGATCCTATCAGACAGCA 57.785 47.619 0.00 0.00 0.00 4.41
2280 2333 3.145286 TCTCGATCCTATCAGACAGCAG 58.855 50.000 0.00 0.00 0.00 4.24
2281 2334 1.611006 TCGATCCTATCAGACAGCAGC 59.389 52.381 0.00 0.00 0.00 5.25
2282 2335 1.336702 CGATCCTATCAGACAGCAGCC 60.337 57.143 0.00 0.00 0.00 4.85
2283 2336 1.969923 GATCCTATCAGACAGCAGCCT 59.030 52.381 0.00 0.00 0.00 4.58
2284 2337 1.117994 TCCTATCAGACAGCAGCCTG 58.882 55.000 0.00 0.00 44.80 4.85
2285 2338 1.117994 CCTATCAGACAGCAGCCTGA 58.882 55.000 0.00 0.00 41.77 3.86
2286 2339 1.483827 CCTATCAGACAGCAGCCTGAA 59.516 52.381 0.00 0.00 42.02 3.02
2287 2340 2.093288 CCTATCAGACAGCAGCCTGAAA 60.093 50.000 0.00 0.00 42.02 2.69
2288 2341 2.110901 ATCAGACAGCAGCCTGAAAG 57.889 50.000 0.00 0.00 42.02 2.62
2289 2342 0.604780 TCAGACAGCAGCCTGAAAGC 60.605 55.000 0.00 0.00 41.77 3.51
2290 2343 0.887836 CAGACAGCAGCCTGAAAGCA 60.888 55.000 0.00 0.00 41.77 3.91
2291 2344 0.888285 AGACAGCAGCCTGAAAGCAC 60.888 55.000 0.00 0.00 41.77 4.40
2292 2345 1.152902 ACAGCAGCCTGAAAGCACA 60.153 52.632 0.00 0.00 41.77 4.57
2293 2346 0.538977 ACAGCAGCCTGAAAGCACAT 60.539 50.000 0.00 0.00 41.77 3.21
2294 2347 0.170561 CAGCAGCCTGAAAGCACATC 59.829 55.000 0.00 0.00 41.77 3.06
2295 2348 1.136147 GCAGCCTGAAAGCACATCG 59.864 57.895 0.00 0.00 34.23 3.84
2296 2349 1.798735 CAGCCTGAAAGCACATCGG 59.201 57.895 0.00 0.00 34.23 4.18
2297 2350 0.674581 CAGCCTGAAAGCACATCGGA 60.675 55.000 0.00 0.00 34.23 4.55
2298 2351 0.036732 AGCCTGAAAGCACATCGGAA 59.963 50.000 0.00 0.00 34.23 4.30
2299 2352 0.169009 GCCTGAAAGCACATCGGAAC 59.831 55.000 0.00 0.00 0.00 3.62
2312 2365 4.637771 GGAACGGAGGGGACAATG 57.362 61.111 0.00 0.00 0.00 2.82
2313 2366 1.077716 GGAACGGAGGGGACAATGG 60.078 63.158 0.00 0.00 0.00 3.16
2314 2367 1.749258 GAACGGAGGGGACAATGGC 60.749 63.158 0.00 0.00 0.00 4.40
2315 2368 3.282374 AACGGAGGGGACAATGGCC 62.282 63.158 0.00 0.00 0.00 5.36
2316 2369 4.856801 CGGAGGGGACAATGGCCG 62.857 72.222 0.00 0.00 0.00 6.13
2317 2370 4.506255 GGAGGGGACAATGGCCGG 62.506 72.222 0.00 0.00 0.00 6.13
2318 2371 3.728373 GAGGGGACAATGGCCGGT 61.728 66.667 1.90 0.00 0.00 5.28
2319 2372 2.285818 AGGGGACAATGGCCGGTA 60.286 61.111 1.90 0.00 0.00 4.02
2320 2373 1.917336 GAGGGGACAATGGCCGGTAA 61.917 60.000 1.90 0.00 0.00 2.85
2321 2374 1.751544 GGGGACAATGGCCGGTAAC 60.752 63.158 1.90 0.00 0.00 2.50
2335 2388 1.564207 GGTAACGATCGGTAAGGCAC 58.436 55.000 15.73 4.24 0.00 5.01
2337 2390 2.457970 GTAACGATCGGTAAGGCACTC 58.542 52.381 15.73 0.00 38.49 3.51
2338 2391 0.179145 AACGATCGGTAAGGCACTCG 60.179 55.000 20.98 0.00 38.49 4.18
2339 2392 1.944676 CGATCGGTAAGGCACTCGC 60.945 63.158 7.38 0.00 38.49 5.03
2349 2402 4.096003 GCACTCGCCCCCTTAGCA 62.096 66.667 0.00 0.00 0.00 3.49
2350 2403 2.911143 CACTCGCCCCCTTAGCAT 59.089 61.111 0.00 0.00 0.00 3.79
2351 2404 2.040009 GCACTCGCCCCCTTAGCATA 62.040 60.000 0.00 0.00 0.00 3.14
2352 2405 0.249911 CACTCGCCCCCTTAGCATAC 60.250 60.000 0.00 0.00 0.00 2.39
2353 2406 1.371558 CTCGCCCCCTTAGCATACC 59.628 63.158 0.00 0.00 0.00 2.73
2354 2407 2.030562 CGCCCCCTTAGCATACCG 59.969 66.667 0.00 0.00 0.00 4.02
2355 2408 2.504274 CGCCCCCTTAGCATACCGA 61.504 63.158 0.00 0.00 0.00 4.69
2356 2409 1.371558 GCCCCCTTAGCATACCGAG 59.628 63.158 0.00 0.00 0.00 4.63
2357 2410 1.408453 GCCCCCTTAGCATACCGAGT 61.408 60.000 0.00 0.00 0.00 4.18
2358 2411 1.129058 CCCCCTTAGCATACCGAGTT 58.871 55.000 0.00 0.00 0.00 3.01
2359 2412 2.322658 CCCCCTTAGCATACCGAGTTA 58.677 52.381 0.00 0.00 0.00 2.24
2360 2413 2.036862 CCCCCTTAGCATACCGAGTTAC 59.963 54.545 0.00 0.00 0.00 2.50
2361 2414 2.036862 CCCCTTAGCATACCGAGTTACC 59.963 54.545 0.00 0.00 0.00 2.85
2362 2415 2.963782 CCCTTAGCATACCGAGTTACCT 59.036 50.000 0.00 0.00 0.00 3.08
2363 2416 4.147321 CCCTTAGCATACCGAGTTACCTA 58.853 47.826 0.00 0.00 0.00 3.08
2364 2417 4.771054 CCCTTAGCATACCGAGTTACCTAT 59.229 45.833 0.00 0.00 0.00 2.57
2365 2418 5.245526 CCCTTAGCATACCGAGTTACCTATT 59.754 44.000 0.00 0.00 0.00 1.73
2366 2419 6.388278 CCTTAGCATACCGAGTTACCTATTC 58.612 44.000 0.00 0.00 0.00 1.75
2367 2420 6.208994 CCTTAGCATACCGAGTTACCTATTCT 59.791 42.308 0.00 0.00 0.00 2.40
2368 2421 5.455056 AGCATACCGAGTTACCTATTCTG 57.545 43.478 0.00 0.00 0.00 3.02
2369 2422 4.281182 AGCATACCGAGTTACCTATTCTGG 59.719 45.833 0.00 0.00 0.00 3.86
2370 2423 4.038883 GCATACCGAGTTACCTATTCTGGT 59.961 45.833 0.00 0.00 43.66 4.00
2371 2424 5.529791 CATACCGAGTTACCTATTCTGGTG 58.470 45.833 0.00 0.00 41.05 4.17
2372 2425 2.167900 ACCGAGTTACCTATTCTGGTGC 59.832 50.000 0.00 0.00 41.05 5.01
2373 2426 2.167693 CCGAGTTACCTATTCTGGTGCA 59.832 50.000 0.00 0.00 41.05 4.57
2374 2427 3.448686 CGAGTTACCTATTCTGGTGCAG 58.551 50.000 0.00 0.00 41.05 4.41
2375 2428 3.119101 CGAGTTACCTATTCTGGTGCAGT 60.119 47.826 0.00 0.00 41.05 4.40
2376 2429 4.434520 GAGTTACCTATTCTGGTGCAGTC 58.565 47.826 0.00 0.00 41.05 3.51
2377 2430 4.097418 AGTTACCTATTCTGGTGCAGTCT 58.903 43.478 0.00 0.00 41.05 3.24
2378 2431 4.081420 AGTTACCTATTCTGGTGCAGTCTG 60.081 45.833 0.00 0.00 41.05 3.51
2379 2432 2.540383 ACCTATTCTGGTGCAGTCTGA 58.460 47.619 3.32 0.00 39.17 3.27
2380 2433 2.234908 ACCTATTCTGGTGCAGTCTGAC 59.765 50.000 3.32 0.00 39.17 3.51
2381 2434 2.534298 CTATTCTGGTGCAGTCTGACG 58.466 52.381 3.32 0.00 32.61 4.35
2382 2435 0.671781 ATTCTGGTGCAGTCTGACGC 60.672 55.000 3.32 14.64 32.61 5.19
2383 2436 1.748329 TTCTGGTGCAGTCTGACGCT 61.748 55.000 19.62 0.00 32.61 5.07
2384 2437 1.301244 CTGGTGCAGTCTGACGCTT 60.301 57.895 19.62 0.00 0.00 4.68
2385 2438 1.287730 CTGGTGCAGTCTGACGCTTC 61.288 60.000 19.62 14.17 0.00 3.86
2386 2439 2.375766 GGTGCAGTCTGACGCTTCG 61.376 63.158 19.62 3.92 0.00 3.79
2387 2440 1.371758 GTGCAGTCTGACGCTTCGA 60.372 57.895 19.62 0.00 0.00 3.71
2388 2441 1.081175 TGCAGTCTGACGCTTCGAG 60.081 57.895 19.62 2.29 0.00 4.04
2389 2442 1.210413 GCAGTCTGACGCTTCGAGA 59.790 57.895 3.32 0.00 0.00 4.04
2390 2443 1.068287 GCAGTCTGACGCTTCGAGAC 61.068 60.000 3.32 12.00 37.05 3.36
2391 2444 0.519519 CAGTCTGACGCTTCGAGACT 59.480 55.000 14.98 14.98 45.90 3.24
2392 2445 1.068885 CAGTCTGACGCTTCGAGACTT 60.069 52.381 16.92 6.07 43.13 3.01
2393 2446 1.198178 AGTCTGACGCTTCGAGACTTC 59.802 52.381 14.98 0.00 43.13 3.01
2394 2447 4.308905 AGTCTGACGCTTCGAGACTTCG 62.309 54.545 14.98 0.00 43.13 3.79
2406 2459 3.290308 GAGACTTCGACTGCTCTTTCA 57.710 47.619 0.00 0.00 0.00 2.69
2407 2460 3.843999 GAGACTTCGACTGCTCTTTCAT 58.156 45.455 0.00 0.00 0.00 2.57
2408 2461 3.583806 AGACTTCGACTGCTCTTTCATG 58.416 45.455 0.00 0.00 0.00 3.07
2409 2462 3.006323 AGACTTCGACTGCTCTTTCATGT 59.994 43.478 0.00 0.00 0.00 3.21
2410 2463 3.321497 ACTTCGACTGCTCTTTCATGTC 58.679 45.455 0.00 0.00 0.00 3.06
2411 2464 3.006323 ACTTCGACTGCTCTTTCATGTCT 59.994 43.478 0.00 0.00 0.00 3.41
2412 2465 3.223423 TCGACTGCTCTTTCATGTCTC 57.777 47.619 0.00 0.00 0.00 3.36
2413 2466 2.822561 TCGACTGCTCTTTCATGTCTCT 59.177 45.455 0.00 0.00 0.00 3.10
2414 2467 3.119673 TCGACTGCTCTTTCATGTCTCTC 60.120 47.826 0.00 0.00 0.00 3.20
2415 2468 3.520569 GACTGCTCTTTCATGTCTCTCC 58.479 50.000 0.00 0.00 0.00 3.71
2416 2469 2.094286 ACTGCTCTTTCATGTCTCTCCG 60.094 50.000 0.00 0.00 0.00 4.63
2417 2470 1.205655 TGCTCTTTCATGTCTCTCCGG 59.794 52.381 0.00 0.00 0.00 5.14
2418 2471 1.472376 GCTCTTTCATGTCTCTCCGGG 60.472 57.143 0.00 0.00 0.00 5.73
2419 2472 1.827969 CTCTTTCATGTCTCTCCGGGT 59.172 52.381 0.00 0.00 0.00 5.28
2420 2473 1.825474 TCTTTCATGTCTCTCCGGGTC 59.175 52.381 0.00 0.00 0.00 4.46
2421 2474 1.550524 CTTTCATGTCTCTCCGGGTCA 59.449 52.381 0.00 0.00 0.00 4.02
2422 2475 1.639722 TTCATGTCTCTCCGGGTCAA 58.360 50.000 0.00 0.00 0.00 3.18
2423 2476 1.186200 TCATGTCTCTCCGGGTCAAG 58.814 55.000 0.00 0.00 0.00 3.02
2424 2477 0.898320 CATGTCTCTCCGGGTCAAGT 59.102 55.000 0.00 0.00 0.00 3.16
2425 2478 1.276421 CATGTCTCTCCGGGTCAAGTT 59.724 52.381 0.00 0.00 0.00 2.66
2426 2479 1.420430 TGTCTCTCCGGGTCAAGTTT 58.580 50.000 0.00 0.00 0.00 2.66
2427 2480 1.070134 TGTCTCTCCGGGTCAAGTTTG 59.930 52.381 0.00 0.00 0.00 2.93
2428 2481 0.685097 TCTCTCCGGGTCAAGTTTGG 59.315 55.000 0.00 0.00 0.00 3.28
2429 2482 0.396811 CTCTCCGGGTCAAGTTTGGT 59.603 55.000 0.00 0.00 0.00 3.67
2430 2483 0.841289 TCTCCGGGTCAAGTTTGGTT 59.159 50.000 0.00 0.00 0.00 3.67
2431 2484 1.202722 TCTCCGGGTCAAGTTTGGTTC 60.203 52.381 0.00 0.00 0.00 3.62
2432 2485 0.533308 TCCGGGTCAAGTTTGGTTCG 60.533 55.000 0.00 0.00 0.00 3.95
2433 2486 0.816421 CCGGGTCAAGTTTGGTTCGT 60.816 55.000 0.00 0.00 0.00 3.85
2434 2487 1.018910 CGGGTCAAGTTTGGTTCGTT 58.981 50.000 0.00 0.00 0.00 3.85
2435 2488 1.003223 CGGGTCAAGTTTGGTTCGTTC 60.003 52.381 0.00 0.00 0.00 3.95
2436 2489 1.003223 GGGTCAAGTTTGGTTCGTTCG 60.003 52.381 0.00 0.00 0.00 3.95
2437 2490 1.003223 GGTCAAGTTTGGTTCGTTCGG 60.003 52.381 0.00 0.00 0.00 4.30
2438 2491 1.667212 GTCAAGTTTGGTTCGTTCGGT 59.333 47.619 0.00 0.00 0.00 4.69
2439 2492 2.096335 GTCAAGTTTGGTTCGTTCGGTT 59.904 45.455 0.00 0.00 0.00 4.44
2440 2493 2.748532 TCAAGTTTGGTTCGTTCGGTTT 59.251 40.909 0.00 0.00 0.00 3.27
2441 2494 3.937706 TCAAGTTTGGTTCGTTCGGTTTA 59.062 39.130 0.00 0.00 0.00 2.01
2442 2495 4.575645 TCAAGTTTGGTTCGTTCGGTTTAT 59.424 37.500 0.00 0.00 0.00 1.40
2443 2496 4.477302 AGTTTGGTTCGTTCGGTTTATG 57.523 40.909 0.00 0.00 0.00 1.90
2444 2497 3.878699 AGTTTGGTTCGTTCGGTTTATGT 59.121 39.130 0.00 0.00 0.00 2.29
2445 2498 3.881780 TTGGTTCGTTCGGTTTATGTG 57.118 42.857 0.00 0.00 0.00 3.21
2446 2499 1.532007 TGGTTCGTTCGGTTTATGTGC 59.468 47.619 0.00 0.00 0.00 4.57
2447 2500 1.532007 GGTTCGTTCGGTTTATGTGCA 59.468 47.619 0.00 0.00 0.00 4.57
2448 2501 2.160813 GGTTCGTTCGGTTTATGTGCAT 59.839 45.455 0.00 0.00 0.00 3.96
2449 2502 3.365565 GGTTCGTTCGGTTTATGTGCATT 60.366 43.478 0.00 0.00 0.00 3.56
2450 2503 4.223659 GTTCGTTCGGTTTATGTGCATTT 58.776 39.130 0.00 0.00 0.00 2.32
2451 2504 5.383958 GTTCGTTCGGTTTATGTGCATTTA 58.616 37.500 0.00 0.00 0.00 1.40
2452 2505 5.211266 TCGTTCGGTTTATGTGCATTTAG 57.789 39.130 0.00 0.00 0.00 1.85
2453 2506 4.691685 TCGTTCGGTTTATGTGCATTTAGT 59.308 37.500 0.00 0.00 0.00 2.24
2454 2507 5.179742 TCGTTCGGTTTATGTGCATTTAGTT 59.820 36.000 0.00 0.00 0.00 2.24
2455 2508 5.506832 CGTTCGGTTTATGTGCATTTAGTTC 59.493 40.000 0.00 0.00 0.00 3.01
2456 2509 5.554822 TCGGTTTATGTGCATTTAGTTCC 57.445 39.130 0.00 0.00 0.00 3.62
2457 2510 5.250200 TCGGTTTATGTGCATTTAGTTCCT 58.750 37.500 0.00 0.00 0.00 3.36
2458 2511 5.123186 TCGGTTTATGTGCATTTAGTTCCTG 59.877 40.000 0.00 0.00 0.00 3.86
2459 2512 5.123186 CGGTTTATGTGCATTTAGTTCCTGA 59.877 40.000 0.00 0.00 0.00 3.86
2460 2513 6.348950 CGGTTTATGTGCATTTAGTTCCTGAA 60.349 38.462 0.00 0.00 0.00 3.02
2461 2514 7.375053 GGTTTATGTGCATTTAGTTCCTGAAA 58.625 34.615 0.00 0.00 0.00 2.69
2462 2515 8.034804 GGTTTATGTGCATTTAGTTCCTGAAAT 58.965 33.333 0.00 0.00 0.00 2.17
2463 2516 9.423061 GTTTATGTGCATTTAGTTCCTGAAATT 57.577 29.630 0.00 0.00 0.00 1.82
2467 2520 8.177119 TGTGCATTTAGTTCCTGAAATTAAGT 57.823 30.769 0.00 0.00 0.00 2.24
2468 2521 8.296713 TGTGCATTTAGTTCCTGAAATTAAGTC 58.703 33.333 0.00 0.00 0.00 3.01
2469 2522 8.515414 GTGCATTTAGTTCCTGAAATTAAGTCT 58.485 33.333 0.00 0.00 0.00 3.24
2470 2523 9.077885 TGCATTTAGTTCCTGAAATTAAGTCTT 57.922 29.630 0.00 0.00 0.00 3.01
2471 2524 9.914131 GCATTTAGTTCCTGAAATTAAGTCTTT 57.086 29.630 0.00 0.00 0.00 2.52
2477 2530 9.588096 AGTTCCTGAAATTAAGTCTTTAATGGT 57.412 29.630 0.00 0.00 38.99 3.55
2478 2531 9.841880 GTTCCTGAAATTAAGTCTTTAATGGTC 57.158 33.333 0.00 0.00 38.99 4.02
2479 2532 8.263940 TCCTGAAATTAAGTCTTTAATGGTCG 57.736 34.615 0.00 0.00 38.99 4.79
2480 2533 7.335924 TCCTGAAATTAAGTCTTTAATGGTCGG 59.664 37.037 0.00 0.00 38.99 4.79
2481 2534 7.120726 CCTGAAATTAAGTCTTTAATGGTCGGT 59.879 37.037 0.00 0.00 38.99 4.69
2482 2535 9.158233 CTGAAATTAAGTCTTTAATGGTCGGTA 57.842 33.333 0.00 0.00 38.99 4.02
2483 2536 9.158233 TGAAATTAAGTCTTTAATGGTCGGTAG 57.842 33.333 0.00 0.00 38.99 3.18
2484 2537 9.374838 GAAATTAAGTCTTTAATGGTCGGTAGA 57.625 33.333 0.00 0.00 38.99 2.59
2485 2538 8.943909 AATTAAGTCTTTAATGGTCGGTAGAG 57.056 34.615 0.00 0.00 38.99 2.43
2486 2539 7.707624 TTAAGTCTTTAATGGTCGGTAGAGA 57.292 36.000 0.00 0.00 0.00 3.10
2487 2540 5.838531 AGTCTTTAATGGTCGGTAGAGAG 57.161 43.478 0.00 0.00 0.00 3.20
2488 2541 5.262804 AGTCTTTAATGGTCGGTAGAGAGT 58.737 41.667 0.00 0.00 0.00 3.24
2489 2542 5.715753 AGTCTTTAATGGTCGGTAGAGAGTT 59.284 40.000 0.00 0.00 0.00 3.01
2490 2543 6.210984 AGTCTTTAATGGTCGGTAGAGAGTTT 59.789 38.462 0.00 0.00 0.00 2.66
2491 2544 7.395489 AGTCTTTAATGGTCGGTAGAGAGTTTA 59.605 37.037 0.00 0.00 0.00 2.01
2492 2545 8.196103 GTCTTTAATGGTCGGTAGAGAGTTTAT 58.804 37.037 0.00 0.00 0.00 1.40
2493 2546 8.755977 TCTTTAATGGTCGGTAGAGAGTTTATT 58.244 33.333 0.00 0.00 0.00 1.40
2494 2547 8.937634 TTTAATGGTCGGTAGAGAGTTTATTC 57.062 34.615 0.00 0.00 0.00 1.75
2495 2548 4.996788 TGGTCGGTAGAGAGTTTATTCC 57.003 45.455 0.00 0.00 0.00 3.01
2496 2549 4.346730 TGGTCGGTAGAGAGTTTATTCCA 58.653 43.478 0.00 0.00 0.00 3.53
2497 2550 4.159135 TGGTCGGTAGAGAGTTTATTCCAC 59.841 45.833 0.00 0.00 0.00 4.02
2498 2551 4.159135 GGTCGGTAGAGAGTTTATTCCACA 59.841 45.833 0.00 0.00 0.00 4.17
2499 2552 5.341617 GTCGGTAGAGAGTTTATTCCACAG 58.658 45.833 0.00 0.00 0.00 3.66
2500 2553 5.125097 GTCGGTAGAGAGTTTATTCCACAGA 59.875 44.000 0.00 0.00 0.00 3.41
2501 2554 5.713389 TCGGTAGAGAGTTTATTCCACAGAA 59.287 40.000 0.00 0.00 36.15 3.02
2502 2555 6.037098 CGGTAGAGAGTTTATTCCACAGAAG 58.963 44.000 0.00 0.00 34.86 2.85
2503 2556 5.813157 GGTAGAGAGTTTATTCCACAGAAGC 59.187 44.000 0.00 0.00 34.86 3.86
2504 2557 5.753721 AGAGAGTTTATTCCACAGAAGCT 57.246 39.130 0.00 0.00 34.86 3.74
2505 2558 6.859112 AGAGAGTTTATTCCACAGAAGCTA 57.141 37.500 0.00 0.00 34.86 3.32
2506 2559 6.635755 AGAGAGTTTATTCCACAGAAGCTAC 58.364 40.000 0.00 0.00 34.86 3.58
2507 2560 6.211584 AGAGAGTTTATTCCACAGAAGCTACA 59.788 38.462 0.00 0.00 34.86 2.74
2508 2561 6.951971 AGAGTTTATTCCACAGAAGCTACAT 58.048 36.000 0.00 0.00 34.86 2.29
2509 2562 8.079211 AGAGTTTATTCCACAGAAGCTACATA 57.921 34.615 0.00 0.00 34.86 2.29
2510 2563 8.709308 AGAGTTTATTCCACAGAAGCTACATAT 58.291 33.333 0.00 0.00 34.86 1.78
2511 2564 9.982651 GAGTTTATTCCACAGAAGCTACATATA 57.017 33.333 0.00 0.00 34.86 0.86
2515 2568 9.982651 TTATTCCACAGAAGCTACATATAACTC 57.017 33.333 0.00 0.00 34.86 3.01
2516 2569 7.418337 TTCCACAGAAGCTACATATAACTCA 57.582 36.000 0.00 0.00 0.00 3.41
2517 2570 7.418337 TCCACAGAAGCTACATATAACTCAA 57.582 36.000 0.00 0.00 0.00 3.02
2518 2571 7.847096 TCCACAGAAGCTACATATAACTCAAA 58.153 34.615 0.00 0.00 0.00 2.69
2519 2572 8.318412 TCCACAGAAGCTACATATAACTCAAAA 58.682 33.333 0.00 0.00 0.00 2.44
2520 2573 9.113838 CCACAGAAGCTACATATAACTCAAAAT 57.886 33.333 0.00 0.00 0.00 1.82
2534 2587 5.551760 ACTCAAAATAGAGTTGCCGATTG 57.448 39.130 0.00 0.00 46.26 2.67
2535 2588 5.003804 ACTCAAAATAGAGTTGCCGATTGT 58.996 37.500 0.00 0.00 46.26 2.71
2536 2589 5.122396 ACTCAAAATAGAGTTGCCGATTGTC 59.878 40.000 0.00 0.00 46.26 3.18
2537 2590 5.245531 TCAAAATAGAGTTGCCGATTGTCT 58.754 37.500 0.00 0.00 0.00 3.41
2538 2591 5.122239 TCAAAATAGAGTTGCCGATTGTCTG 59.878 40.000 0.00 0.00 0.00 3.51
2539 2592 2.672961 TAGAGTTGCCGATTGTCTGG 57.327 50.000 0.00 0.00 0.00 3.86
2545 2598 4.722193 CCGATTGTCTGGCAAGGT 57.278 55.556 0.00 0.00 40.86 3.50
2546 2599 3.853104 CCGATTGTCTGGCAAGGTA 57.147 52.632 0.00 0.00 40.86 3.08
2547 2600 2.332063 CCGATTGTCTGGCAAGGTAT 57.668 50.000 0.00 0.00 40.86 2.73
2548 2601 3.469008 CCGATTGTCTGGCAAGGTATA 57.531 47.619 0.00 0.00 40.86 1.47
2549 2602 3.131396 CCGATTGTCTGGCAAGGTATAC 58.869 50.000 0.00 0.00 40.86 1.47
2550 2603 3.181465 CCGATTGTCTGGCAAGGTATACT 60.181 47.826 0.00 0.00 40.86 2.12
2551 2604 4.051922 CGATTGTCTGGCAAGGTATACTC 58.948 47.826 0.00 0.00 40.86 2.59
2552 2605 4.441495 CGATTGTCTGGCAAGGTATACTCA 60.441 45.833 0.00 0.00 40.86 3.41
2553 2606 5.615289 GATTGTCTGGCAAGGTATACTCAT 58.385 41.667 0.00 0.00 40.86 2.90
2554 2607 5.435686 TTGTCTGGCAAGGTATACTCATT 57.564 39.130 2.25 0.00 32.52 2.57
2555 2608 5.023533 TGTCTGGCAAGGTATACTCATTC 57.976 43.478 2.25 0.00 0.00 2.67
2556 2609 4.469586 TGTCTGGCAAGGTATACTCATTCA 59.530 41.667 2.25 0.00 0.00 2.57
2557 2610 5.053145 GTCTGGCAAGGTATACTCATTCAG 58.947 45.833 2.25 6.34 0.00 3.02
2558 2611 4.962362 TCTGGCAAGGTATACTCATTCAGA 59.038 41.667 2.25 8.35 0.00 3.27
2567 2620 3.682766 CTCATTCAGAGCGAGCCAT 57.317 52.632 0.00 0.00 37.59 4.40
2568 2621 2.808523 CTCATTCAGAGCGAGCCATA 57.191 50.000 0.00 0.00 37.59 2.74
2569 2622 3.103447 CTCATTCAGAGCGAGCCATAA 57.897 47.619 0.00 0.00 37.59 1.90
2570 2623 2.799412 CTCATTCAGAGCGAGCCATAAC 59.201 50.000 0.00 0.00 37.59 1.89
2571 2624 2.432146 TCATTCAGAGCGAGCCATAACT 59.568 45.455 0.00 0.00 0.00 2.24
2572 2625 2.299993 TTCAGAGCGAGCCATAACTG 57.700 50.000 0.00 0.00 0.00 3.16
2573 2626 1.186200 TCAGAGCGAGCCATAACTGT 58.814 50.000 0.00 0.00 0.00 3.55
2574 2627 1.134995 TCAGAGCGAGCCATAACTGTG 60.135 52.381 0.00 0.00 0.00 3.66
2575 2628 0.898320 AGAGCGAGCCATAACTGTGT 59.102 50.000 0.00 0.00 0.00 3.72
2576 2629 1.002366 GAGCGAGCCATAACTGTGTG 58.998 55.000 0.00 0.00 0.00 3.82
2577 2630 0.391661 AGCGAGCCATAACTGTGTGG 60.392 55.000 7.83 7.83 39.01 4.17
2583 2636 2.198827 CCATAACTGTGTGGCTTGGA 57.801 50.000 0.26 0.00 0.00 3.53
2584 2637 2.513753 CCATAACTGTGTGGCTTGGAA 58.486 47.619 0.26 0.00 0.00 3.53
2585 2638 2.489329 CCATAACTGTGTGGCTTGGAAG 59.511 50.000 0.26 0.00 0.00 3.46
2586 2639 3.149196 CATAACTGTGTGGCTTGGAAGT 58.851 45.455 0.00 0.00 0.00 3.01
2587 2640 1.392589 AACTGTGTGGCTTGGAAGTG 58.607 50.000 0.00 0.00 0.00 3.16
2588 2641 1.103398 ACTGTGTGGCTTGGAAGTGC 61.103 55.000 0.00 0.00 0.00 4.40
2598 2651 1.351017 CTTGGAAGTGCCCCTGTTAGA 59.649 52.381 0.00 0.00 34.97 2.10
2641 4121 1.141858 GGGCAGAGATTGTAGGGGAAG 59.858 57.143 0.00 0.00 0.00 3.46
2659 4139 0.631753 AGGATGGAGGAAGACGAGGA 59.368 55.000 0.00 0.00 0.00 3.71
2664 4144 0.392729 GGAGGAAGACGAGGACGAGA 60.393 60.000 0.00 0.00 42.66 4.04
2778 4258 2.507407 AAGGGAAGCCGAGCAAATAA 57.493 45.000 0.00 0.00 0.00 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
49 50 2.126071 CGAGGAGGAAAGCGCGAA 60.126 61.111 12.10 0.00 0.00 4.70
58 59 2.044555 CGGTACTGCACGAGGAGGA 61.045 63.158 6.31 0.00 37.55 3.71
61 62 2.034532 TCCGGTACTGCACGAGGA 59.965 61.111 0.00 0.00 33.75 3.71
68 69 2.436115 GGTTGCCTCCGGTACTGC 60.436 66.667 0.00 0.40 0.00 4.40
114 115 1.381735 GGGGAAATGGAAGGGCTGG 60.382 63.158 0.00 0.00 0.00 4.85
119 120 3.099905 GAGAAAAGGGGGAAATGGAAGG 58.900 50.000 0.00 0.00 0.00 3.46
150 152 1.916651 CACGAGCTCAGATCAGAAACG 59.083 52.381 15.40 0.00 0.00 3.60
228 230 1.202463 CCCAGTTCATACGAGGAGCTG 60.202 57.143 0.00 10.68 41.53 4.24
248 250 1.071857 AGTGGGAAAACGGGAACTCTC 59.928 52.381 0.00 0.00 0.00 3.20
249 251 1.071857 GAGTGGGAAAACGGGAACTCT 59.928 52.381 0.00 0.00 33.02 3.24
250 252 1.520494 GAGTGGGAAAACGGGAACTC 58.480 55.000 0.00 0.00 0.00 3.01
284 292 9.213799 GTAATGATCCAAACCTCAGATCTATTC 57.786 37.037 0.00 0.00 37.80 1.75
287 295 7.687837 GCAGTAATGATCCAAACCTCAGATCTA 60.688 40.741 0.00 0.00 37.80 1.98
303 311 8.454106 GTTTCACAATAAGTCAGCAGTAATGAT 58.546 33.333 0.00 0.00 0.00 2.45
355 363 2.560119 GCGTCACCATTGCACCCAA 61.560 57.895 0.00 0.00 35.01 4.12
357 365 3.747976 GGCGTCACCATTGCACCC 61.748 66.667 0.00 0.00 38.86 4.61
358 366 2.672996 AGGCGTCACCATTGCACC 60.673 61.111 0.00 0.00 43.14 5.01
368 376 1.000163 GAGAGACAAACAGAGGCGTCA 60.000 52.381 9.41 0.00 0.00 4.35
372 380 2.611722 GGACAGAGAGACAAACAGAGGC 60.612 54.545 0.00 0.00 0.00 4.70
376 384 2.740981 GCATGGACAGAGAGACAAACAG 59.259 50.000 0.00 0.00 0.00 3.16
413 432 3.574614 AGCGAAACCACAAAACATATGC 58.425 40.909 1.58 0.00 0.00 3.14
585 605 0.242017 AAGCTGAGCCAAATCAACGC 59.758 50.000 0.00 0.00 0.00 4.84
594 615 3.754965 ACATGTAAGAAAAGCTGAGCCA 58.245 40.909 0.00 0.00 0.00 4.75
698 720 6.183360 TGCTTGGGTTACATAAAAAGAAAGCA 60.183 34.615 0.00 0.00 42.71 3.91
699 721 6.220201 TGCTTGGGTTACATAAAAAGAAAGC 58.780 36.000 0.00 0.00 37.42 3.51
700 722 6.868339 CCTGCTTGGGTTACATAAAAAGAAAG 59.132 38.462 0.00 0.00 0.00 2.62
708 730 2.916934 ACCTCCTGCTTGGGTTACATAA 59.083 45.455 0.00 0.00 36.20 1.90
728 750 8.119226 GTCATCAGTTAGCAAAGACATTGATAC 58.881 37.037 0.00 0.00 39.49 2.24
733 755 5.413833 CAGGTCATCAGTTAGCAAAGACATT 59.586 40.000 0.00 0.00 0.00 2.71
798 821 1.592064 TGCAGACACATTTGAAGCGA 58.408 45.000 0.00 0.00 0.00 4.93
1049 1075 6.530120 ACGTGGGATATATCTGCAAAATACA 58.470 36.000 12.42 0.00 0.00 2.29
1192 1218 2.157738 GCACTGGAAGCTGAAGACATT 58.842 47.619 0.00 0.00 37.60 2.71
1312 1338 3.261580 TCATGAAGCGTGAACTACCATG 58.738 45.455 0.00 0.00 34.63 3.66
1491 1523 3.069586 CGTAGCATAAGACCCCTGATGAA 59.930 47.826 0.00 0.00 33.78 2.57
1540 1572 1.243902 TCCAAACTCCAAATCCGCAC 58.756 50.000 0.00 0.00 0.00 5.34
1566 1598 1.896660 CCTCACCACCCAACCGTTG 60.897 63.158 4.12 4.12 0.00 4.10
1567 1599 2.513895 CCTCACCACCCAACCGTT 59.486 61.111 0.00 0.00 0.00 4.44
1570 1602 1.678970 GATGCCTCACCACCCAACC 60.679 63.158 0.00 0.00 0.00 3.77
1674 1706 4.285517 AGCTCTCTCTCCAAGTCAAAATCA 59.714 41.667 0.00 0.00 0.00 2.57
1708 1740 8.693120 ATCAGCTTATGATCAATTCTGTCAAT 57.307 30.769 0.00 0.00 46.01 2.57
1731 1766 4.926238 CCAGTACCGATGCTAAATGAGATC 59.074 45.833 0.00 0.00 0.00 2.75
1747 1782 0.611714 TCCGAGCTTTTCCCAGTACC 59.388 55.000 0.00 0.00 0.00 3.34
1803 1838 7.040892 CCATAGTATGGCACGTAGAGTTTACTA 60.041 40.741 16.26 0.00 44.70 1.82
1807 1842 4.945246 CCATAGTATGGCACGTAGAGTTT 58.055 43.478 16.26 0.00 44.70 2.66
1808 1843 4.585955 CCATAGTATGGCACGTAGAGTT 57.414 45.455 16.26 0.00 44.70 3.01
2010 2063 6.070538 AGCATAAGTAAGACCAGAGTTGACAT 60.071 38.462 0.00 0.00 0.00 3.06
2106 2159 2.327325 TTACAGGAGTTCTCCCAGCT 57.673 50.000 14.40 0.00 0.00 4.24
2139 2192 4.920640 ACTCCCATATAACACGAGACTG 57.079 45.455 0.00 0.00 0.00 3.51
2146 2199 4.705023 ACCAAAGCAACTCCCATATAACAC 59.295 41.667 0.00 0.00 0.00 3.32
2155 2208 4.394439 TTGTTTTACCAAAGCAACTCCC 57.606 40.909 0.00 0.00 36.80 4.30
2169 2222 7.575414 TTCTACCACATGAGCTTTTGTTTTA 57.425 32.000 0.00 0.00 0.00 1.52
2171 2224 6.265196 TGATTCTACCACATGAGCTTTTGTTT 59.735 34.615 0.00 0.00 0.00 2.83
2175 2228 4.393062 CGTGATTCTACCACATGAGCTTTT 59.607 41.667 0.00 0.00 34.36 2.27
2178 2231 2.760650 TCGTGATTCTACCACATGAGCT 59.239 45.455 0.00 0.00 34.36 4.09
2182 2235 2.545526 GGCATCGTGATTCTACCACATG 59.454 50.000 0.00 0.00 34.36 3.21
2185 2238 2.159099 TCAGGCATCGTGATTCTACCAC 60.159 50.000 0.00 0.00 0.00 4.16
2197 2250 2.672961 TACTTCACCTTCAGGCATCG 57.327 50.000 0.00 0.00 39.32 3.84
2199 2252 4.721776 TCCTAATACTTCACCTTCAGGCAT 59.278 41.667 0.00 0.00 39.32 4.40
2203 2256 6.127054 TGTGGATCCTAATACTTCACCTTCAG 60.127 42.308 14.23 0.00 0.00 3.02
2204 2257 5.724370 TGTGGATCCTAATACTTCACCTTCA 59.276 40.000 14.23 0.00 0.00 3.02
2205 2258 6.235231 TGTGGATCCTAATACTTCACCTTC 57.765 41.667 14.23 0.00 0.00 3.46
2206 2259 5.396884 GCTGTGGATCCTAATACTTCACCTT 60.397 44.000 14.23 0.00 0.00 3.50
2207 2260 4.101741 GCTGTGGATCCTAATACTTCACCT 59.898 45.833 14.23 0.00 0.00 4.00
2208 2261 4.101741 AGCTGTGGATCCTAATACTTCACC 59.898 45.833 14.23 0.00 0.00 4.02
2209 2262 5.053145 CAGCTGTGGATCCTAATACTTCAC 58.947 45.833 14.23 0.00 0.00 3.18
2222 2275 0.250467 ACTCGTTTGCAGCTGTGGAT 60.250 50.000 16.64 0.00 0.00 3.41
2226 2279 0.179073 ACAGACTCGTTTGCAGCTGT 60.179 50.000 16.64 0.00 0.00 4.40
2249 2302 1.484038 AGGATCGAGAAAGCTCTGCT 58.516 50.000 0.00 0.00 42.56 4.24
2250 2303 3.005261 TGATAGGATCGAGAAAGCTCTGC 59.995 47.826 0.00 0.00 39.06 4.26
2251 2304 4.518590 TCTGATAGGATCGAGAAAGCTCTG 59.481 45.833 0.00 0.00 39.06 3.35
2252 2305 4.518970 GTCTGATAGGATCGAGAAAGCTCT 59.481 45.833 0.00 0.00 39.06 4.09
2253 2306 4.277174 TGTCTGATAGGATCGAGAAAGCTC 59.723 45.833 0.00 0.00 37.81 4.09
2254 2307 4.211125 TGTCTGATAGGATCGAGAAAGCT 58.789 43.478 0.00 0.00 0.00 3.74
2255 2308 4.545610 CTGTCTGATAGGATCGAGAAAGC 58.454 47.826 0.00 0.00 0.00 3.51
2256 2309 4.037327 TGCTGTCTGATAGGATCGAGAAAG 59.963 45.833 3.54 0.00 31.03 2.62
2257 2310 3.954258 TGCTGTCTGATAGGATCGAGAAA 59.046 43.478 3.54 0.00 0.00 2.52
2258 2311 3.555966 TGCTGTCTGATAGGATCGAGAA 58.444 45.455 3.54 0.00 0.00 2.87
2259 2312 3.145286 CTGCTGTCTGATAGGATCGAGA 58.855 50.000 3.54 0.00 0.00 4.04
2260 2313 2.351641 GCTGCTGTCTGATAGGATCGAG 60.352 54.545 3.54 0.00 0.00 4.04
2261 2314 1.611006 GCTGCTGTCTGATAGGATCGA 59.389 52.381 3.54 0.00 0.00 3.59
2262 2315 1.336702 GGCTGCTGTCTGATAGGATCG 60.337 57.143 0.00 0.00 0.00 3.69
2263 2316 1.969923 AGGCTGCTGTCTGATAGGATC 59.030 52.381 0.00 0.00 0.00 3.36
2264 2317 2.100128 AGGCTGCTGTCTGATAGGAT 57.900 50.000 0.00 0.00 0.00 3.24
2265 2318 3.623365 AGGCTGCTGTCTGATAGGA 57.377 52.632 0.00 0.00 0.00 2.94
2271 2324 0.887836 TGCTTTCAGGCTGCTGTCTG 60.888 55.000 18.25 18.25 46.58 3.51
2272 2325 0.888285 GTGCTTTCAGGCTGCTGTCT 60.888 55.000 10.34 0.00 0.00 3.41
2273 2326 1.168407 TGTGCTTTCAGGCTGCTGTC 61.168 55.000 10.34 0.00 0.00 3.51
2274 2327 0.538977 ATGTGCTTTCAGGCTGCTGT 60.539 50.000 10.34 0.00 0.00 4.40
2275 2328 0.170561 GATGTGCTTTCAGGCTGCTG 59.829 55.000 10.34 3.25 0.00 4.41
2276 2329 1.303799 CGATGTGCTTTCAGGCTGCT 61.304 55.000 10.34 0.00 0.00 4.24
2277 2330 1.136147 CGATGTGCTTTCAGGCTGC 59.864 57.895 10.34 0.00 0.00 5.25
2278 2331 0.674581 TCCGATGTGCTTTCAGGCTG 60.675 55.000 8.58 8.58 0.00 4.85
2279 2332 0.036732 TTCCGATGTGCTTTCAGGCT 59.963 50.000 0.00 0.00 0.00 4.58
2280 2333 0.169009 GTTCCGATGTGCTTTCAGGC 59.831 55.000 0.00 0.00 0.00 4.85
2281 2334 0.443869 CGTTCCGATGTGCTTTCAGG 59.556 55.000 0.00 0.00 0.00 3.86
2282 2335 0.443869 CCGTTCCGATGTGCTTTCAG 59.556 55.000 0.00 0.00 0.00 3.02
2283 2336 0.034198 TCCGTTCCGATGTGCTTTCA 59.966 50.000 0.00 0.00 0.00 2.69
2284 2337 0.721718 CTCCGTTCCGATGTGCTTTC 59.278 55.000 0.00 0.00 0.00 2.62
2285 2338 0.673644 CCTCCGTTCCGATGTGCTTT 60.674 55.000 0.00 0.00 0.00 3.51
2286 2339 1.079127 CCTCCGTTCCGATGTGCTT 60.079 57.895 0.00 0.00 0.00 3.91
2287 2340 2.579201 CCTCCGTTCCGATGTGCT 59.421 61.111 0.00 0.00 0.00 4.40
2288 2341 2.511600 CCCTCCGTTCCGATGTGC 60.512 66.667 0.00 0.00 0.00 4.57
2289 2342 2.186903 CCCCTCCGTTCCGATGTG 59.813 66.667 0.00 0.00 0.00 3.21
2290 2343 2.038329 TCCCCTCCGTTCCGATGT 59.962 61.111 0.00 0.00 0.00 3.06
2291 2344 1.895020 TTGTCCCCTCCGTTCCGATG 61.895 60.000 0.00 0.00 0.00 3.84
2292 2345 0.981277 ATTGTCCCCTCCGTTCCGAT 60.981 55.000 0.00 0.00 0.00 4.18
2293 2346 1.611261 ATTGTCCCCTCCGTTCCGA 60.611 57.895 0.00 0.00 0.00 4.55
2294 2347 1.449601 CATTGTCCCCTCCGTTCCG 60.450 63.158 0.00 0.00 0.00 4.30
2295 2348 1.077716 CCATTGTCCCCTCCGTTCC 60.078 63.158 0.00 0.00 0.00 3.62
2296 2349 1.749258 GCCATTGTCCCCTCCGTTC 60.749 63.158 0.00 0.00 0.00 3.95
2297 2350 2.355115 GCCATTGTCCCCTCCGTT 59.645 61.111 0.00 0.00 0.00 4.44
2298 2351 3.728373 GGCCATTGTCCCCTCCGT 61.728 66.667 0.00 0.00 0.00 4.69
2299 2352 4.856801 CGGCCATTGTCCCCTCCG 62.857 72.222 2.24 0.00 0.00 4.63
2300 2353 4.506255 CCGGCCATTGTCCCCTCC 62.506 72.222 2.24 0.00 0.00 4.30
2301 2354 1.917336 TTACCGGCCATTGTCCCCTC 61.917 60.000 0.00 0.00 0.00 4.30
2302 2355 1.926489 TTACCGGCCATTGTCCCCT 60.926 57.895 0.00 0.00 0.00 4.79
2303 2356 1.751544 GTTACCGGCCATTGTCCCC 60.752 63.158 0.00 0.00 0.00 4.81
2304 2357 2.110352 CGTTACCGGCCATTGTCCC 61.110 63.158 0.00 0.00 0.00 4.46
2305 2358 0.463116 ATCGTTACCGGCCATTGTCC 60.463 55.000 0.00 0.00 33.95 4.02
2306 2359 0.935196 GATCGTTACCGGCCATTGTC 59.065 55.000 0.00 0.00 33.95 3.18
2307 2360 0.808453 CGATCGTTACCGGCCATTGT 60.808 55.000 7.03 0.00 33.95 2.71
2308 2361 1.495584 CCGATCGTTACCGGCCATTG 61.496 60.000 15.09 0.00 39.22 2.82
2309 2362 1.227438 CCGATCGTTACCGGCCATT 60.227 57.895 15.09 0.00 39.22 3.16
2310 2363 2.420043 CCGATCGTTACCGGCCAT 59.580 61.111 15.09 0.00 39.22 4.40
2315 2368 0.101040 TGCCTTACCGATCGTTACCG 59.899 55.000 15.09 0.08 0.00 4.02
2316 2369 1.135721 AGTGCCTTACCGATCGTTACC 59.864 52.381 15.09 0.00 0.00 2.85
2317 2370 2.457970 GAGTGCCTTACCGATCGTTAC 58.542 52.381 15.09 0.00 0.00 2.50
2318 2371 1.064505 CGAGTGCCTTACCGATCGTTA 59.935 52.381 15.09 0.11 0.00 3.18
2319 2372 0.179145 CGAGTGCCTTACCGATCGTT 60.179 55.000 15.09 1.36 0.00 3.85
2320 2373 1.432251 CGAGTGCCTTACCGATCGT 59.568 57.895 15.09 4.92 0.00 3.73
2321 2374 1.944676 GCGAGTGCCTTACCGATCG 60.945 63.158 8.51 8.51 33.98 3.69
2322 2375 4.014065 GCGAGTGCCTTACCGATC 57.986 61.111 0.00 0.00 33.98 3.69
2332 2385 2.040009 TATGCTAAGGGGGCGAGTGC 62.040 60.000 0.00 0.00 41.71 4.40
2333 2386 0.249911 GTATGCTAAGGGGGCGAGTG 60.250 60.000 0.00 0.00 0.00 3.51
2334 2387 1.408453 GGTATGCTAAGGGGGCGAGT 61.408 60.000 0.00 0.00 0.00 4.18
2335 2388 1.371558 GGTATGCTAAGGGGGCGAG 59.628 63.158 0.00 0.00 0.00 5.03
2336 2389 2.504274 CGGTATGCTAAGGGGGCGA 61.504 63.158 0.00 0.00 0.00 5.54
2337 2390 2.030562 CGGTATGCTAAGGGGGCG 59.969 66.667 0.00 0.00 0.00 6.13
2338 2391 1.371558 CTCGGTATGCTAAGGGGGC 59.628 63.158 0.00 0.00 0.00 5.80
2339 2392 1.129058 AACTCGGTATGCTAAGGGGG 58.871 55.000 0.00 0.00 0.00 5.40
2340 2393 2.036862 GGTAACTCGGTATGCTAAGGGG 59.963 54.545 0.00 0.00 0.00 4.79
2341 2394 3.382048 GGTAACTCGGTATGCTAAGGG 57.618 52.381 0.00 0.00 0.00 3.95
2349 2402 8.134308 CTGCACCAGAATAGGTAACTCGGTAT 62.134 46.154 0.00 0.00 40.77 2.73
2350 2403 6.896819 CTGCACCAGAATAGGTAACTCGGTA 61.897 48.000 0.00 0.00 40.77 4.02
2351 2404 6.184266 CTGCACCAGAATAGGTAACTCGGT 62.184 50.000 0.00 0.00 40.77 4.69
2352 2405 3.738281 CTGCACCAGAATAGGTAACTCGG 60.738 52.174 0.00 0.00 40.77 4.63
2353 2406 3.119101 ACTGCACCAGAATAGGTAACTCG 60.119 47.826 0.00 0.00 40.77 4.18
2354 2407 4.160626 AGACTGCACCAGAATAGGTAACTC 59.839 45.833 0.00 0.00 40.77 3.01
2355 2408 4.081420 CAGACTGCACCAGAATAGGTAACT 60.081 45.833 0.00 0.00 40.77 2.24
2356 2409 4.081642 TCAGACTGCACCAGAATAGGTAAC 60.082 45.833 0.00 0.00 40.77 2.50
2357 2410 4.081642 GTCAGACTGCACCAGAATAGGTAA 60.082 45.833 0.00 0.00 40.77 2.85
2358 2411 3.447586 GTCAGACTGCACCAGAATAGGTA 59.552 47.826 0.00 0.00 40.77 3.08
2359 2412 2.234908 GTCAGACTGCACCAGAATAGGT 59.765 50.000 0.00 0.00 44.48 3.08
2360 2413 2.736719 CGTCAGACTGCACCAGAATAGG 60.737 54.545 0.00 0.00 35.18 2.57
2361 2414 2.534298 CGTCAGACTGCACCAGAATAG 58.466 52.381 0.00 0.00 35.18 1.73
2362 2415 1.404181 GCGTCAGACTGCACCAGAATA 60.404 52.381 11.14 0.00 35.18 1.75
2363 2416 0.671781 GCGTCAGACTGCACCAGAAT 60.672 55.000 11.14 0.00 35.18 2.40
2364 2417 1.300931 GCGTCAGACTGCACCAGAA 60.301 57.895 11.14 0.00 35.18 3.02
2365 2418 1.748329 AAGCGTCAGACTGCACCAGA 61.748 55.000 16.37 0.00 35.18 3.86
2366 2419 1.287730 GAAGCGTCAGACTGCACCAG 61.288 60.000 16.37 0.00 37.52 4.00
2367 2420 1.300931 GAAGCGTCAGACTGCACCA 60.301 57.895 16.37 0.00 0.00 4.17
2368 2421 2.375766 CGAAGCGTCAGACTGCACC 61.376 63.158 16.37 8.60 0.00 5.01
2369 2422 1.340657 CTCGAAGCGTCAGACTGCAC 61.341 60.000 16.37 10.39 0.00 4.57
2370 2423 1.081175 CTCGAAGCGTCAGACTGCA 60.081 57.895 16.37 0.00 0.00 4.41
2371 2424 1.068287 GTCTCGAAGCGTCAGACTGC 61.068 60.000 17.94 8.75 33.08 4.40
2372 2425 0.519519 AGTCTCGAAGCGTCAGACTG 59.480 55.000 23.18 0.00 39.11 3.51
2373 2426 1.198178 GAAGTCTCGAAGCGTCAGACT 59.802 52.381 20.39 20.39 40.73 3.24
2374 2427 1.608822 GAAGTCTCGAAGCGTCAGAC 58.391 55.000 17.70 17.70 34.63 3.51
2385 2438 2.246789 GAAAGAGCAGTCGAAGTCTCG 58.753 52.381 0.00 0.00 46.87 4.04
2386 2439 3.290308 TGAAAGAGCAGTCGAAGTCTC 57.710 47.619 0.00 0.00 0.00 3.36
2387 2440 3.006323 ACATGAAAGAGCAGTCGAAGTCT 59.994 43.478 0.00 0.00 0.00 3.24
2388 2441 3.321497 ACATGAAAGAGCAGTCGAAGTC 58.679 45.455 0.00 0.00 0.00 3.01
2389 2442 3.006323 AGACATGAAAGAGCAGTCGAAGT 59.994 43.478 0.00 0.00 34.56 3.01
2390 2443 3.583806 AGACATGAAAGAGCAGTCGAAG 58.416 45.455 0.00 0.00 34.56 3.79
2391 2444 3.256879 AGAGACATGAAAGAGCAGTCGAA 59.743 43.478 0.00 0.00 34.56 3.71
2392 2445 2.822561 AGAGACATGAAAGAGCAGTCGA 59.177 45.455 0.00 0.00 34.56 4.20
2393 2446 3.178267 GAGAGACATGAAAGAGCAGTCG 58.822 50.000 0.00 0.00 34.56 4.18
2394 2447 3.520569 GGAGAGACATGAAAGAGCAGTC 58.479 50.000 0.00 0.00 0.00 3.51
2395 2448 2.094286 CGGAGAGACATGAAAGAGCAGT 60.094 50.000 0.00 0.00 0.00 4.40
2396 2449 2.538437 CGGAGAGACATGAAAGAGCAG 58.462 52.381 0.00 0.00 0.00 4.24
2397 2450 1.205655 CCGGAGAGACATGAAAGAGCA 59.794 52.381 0.00 0.00 0.00 4.26
2398 2451 1.472376 CCCGGAGAGACATGAAAGAGC 60.472 57.143 0.73 0.00 0.00 4.09
2399 2452 1.827969 ACCCGGAGAGACATGAAAGAG 59.172 52.381 0.73 0.00 0.00 2.85
2400 2453 1.825474 GACCCGGAGAGACATGAAAGA 59.175 52.381 0.73 0.00 0.00 2.52
2401 2454 1.550524 TGACCCGGAGAGACATGAAAG 59.449 52.381 0.73 0.00 0.00 2.62
2402 2455 1.639722 TGACCCGGAGAGACATGAAA 58.360 50.000 0.73 0.00 0.00 2.69
2403 2456 1.550524 CTTGACCCGGAGAGACATGAA 59.449 52.381 0.73 0.00 0.00 2.57
2404 2457 1.186200 CTTGACCCGGAGAGACATGA 58.814 55.000 0.73 0.00 0.00 3.07
2405 2458 0.898320 ACTTGACCCGGAGAGACATG 59.102 55.000 0.73 0.00 0.00 3.21
2406 2459 1.645710 AACTTGACCCGGAGAGACAT 58.354 50.000 0.73 0.00 0.00 3.06
2407 2460 1.070134 CAAACTTGACCCGGAGAGACA 59.930 52.381 0.73 0.00 0.00 3.41
2408 2461 1.608283 CCAAACTTGACCCGGAGAGAC 60.608 57.143 0.73 0.00 0.00 3.36
2409 2462 0.685097 CCAAACTTGACCCGGAGAGA 59.315 55.000 0.73 0.00 0.00 3.10
2410 2463 0.396811 ACCAAACTTGACCCGGAGAG 59.603 55.000 0.73 0.00 0.00 3.20
2411 2464 0.841289 AACCAAACTTGACCCGGAGA 59.159 50.000 0.73 0.00 0.00 3.71
2412 2465 1.235724 GAACCAAACTTGACCCGGAG 58.764 55.000 0.73 0.00 0.00 4.63
2413 2466 0.533308 CGAACCAAACTTGACCCGGA 60.533 55.000 0.73 0.00 0.00 5.14
2414 2467 0.816421 ACGAACCAAACTTGACCCGG 60.816 55.000 0.00 0.00 0.00 5.73
2415 2468 1.003223 GAACGAACCAAACTTGACCCG 60.003 52.381 0.00 0.00 0.00 5.28
2416 2469 1.003223 CGAACGAACCAAACTTGACCC 60.003 52.381 0.00 0.00 0.00 4.46
2417 2470 1.003223 CCGAACGAACCAAACTTGACC 60.003 52.381 0.00 0.00 0.00 4.02
2418 2471 1.667212 ACCGAACGAACCAAACTTGAC 59.333 47.619 0.00 0.00 0.00 3.18
2419 2472 2.027003 ACCGAACGAACCAAACTTGA 57.973 45.000 0.00 0.00 0.00 3.02
2420 2473 2.836479 AACCGAACGAACCAAACTTG 57.164 45.000 0.00 0.00 0.00 3.16
2421 2474 4.336153 ACATAAACCGAACGAACCAAACTT 59.664 37.500 0.00 0.00 0.00 2.66
2422 2475 3.878699 ACATAAACCGAACGAACCAAACT 59.121 39.130 0.00 0.00 0.00 2.66
2423 2476 3.969981 CACATAAACCGAACGAACCAAAC 59.030 43.478 0.00 0.00 0.00 2.93
2424 2477 3.548415 GCACATAAACCGAACGAACCAAA 60.548 43.478 0.00 0.00 0.00 3.28
2425 2478 2.031857 GCACATAAACCGAACGAACCAA 60.032 45.455 0.00 0.00 0.00 3.67
2426 2479 1.532007 GCACATAAACCGAACGAACCA 59.468 47.619 0.00 0.00 0.00 3.67
2427 2480 1.532007 TGCACATAAACCGAACGAACC 59.468 47.619 0.00 0.00 0.00 3.62
2428 2481 2.953640 TGCACATAAACCGAACGAAC 57.046 45.000 0.00 0.00 0.00 3.95
2429 2482 4.491234 AAATGCACATAAACCGAACGAA 57.509 36.364 0.00 0.00 0.00 3.85
2430 2483 4.691685 ACTAAATGCACATAAACCGAACGA 59.308 37.500 0.00 0.00 0.00 3.85
2431 2484 4.965062 ACTAAATGCACATAAACCGAACG 58.035 39.130 0.00 0.00 0.00 3.95
2432 2485 5.798434 GGAACTAAATGCACATAAACCGAAC 59.202 40.000 0.00 0.00 0.00 3.95
2433 2486 5.708230 AGGAACTAAATGCACATAAACCGAA 59.292 36.000 0.00 0.00 36.02 4.30
2434 2487 5.123186 CAGGAACTAAATGCACATAAACCGA 59.877 40.000 0.00 0.00 36.02 4.69
2435 2488 5.123186 TCAGGAACTAAATGCACATAAACCG 59.877 40.000 0.00 0.00 36.02 4.44
2436 2489 6.509418 TCAGGAACTAAATGCACATAAACC 57.491 37.500 0.00 0.00 36.02 3.27
2437 2490 8.986477 ATTTCAGGAACTAAATGCACATAAAC 57.014 30.769 0.00 0.00 36.02 2.01
2441 2494 8.806146 ACTTAATTTCAGGAACTAAATGCACAT 58.194 29.630 0.00 0.00 36.02 3.21
2442 2495 8.177119 ACTTAATTTCAGGAACTAAATGCACA 57.823 30.769 0.00 0.00 36.02 4.57
2443 2496 8.515414 AGACTTAATTTCAGGAACTAAATGCAC 58.485 33.333 0.00 0.00 36.02 4.57
2444 2497 8.635765 AGACTTAATTTCAGGAACTAAATGCA 57.364 30.769 0.00 0.00 36.02 3.96
2445 2498 9.914131 AAAGACTTAATTTCAGGAACTAAATGC 57.086 29.630 0.00 0.00 36.02 3.56
2451 2504 9.588096 ACCATTAAAGACTTAATTTCAGGAACT 57.412 29.630 0.00 0.00 35.88 3.01
2452 2505 9.841880 GACCATTAAAGACTTAATTTCAGGAAC 57.158 33.333 0.00 0.00 35.88 3.62
2453 2506 8.726988 CGACCATTAAAGACTTAATTTCAGGAA 58.273 33.333 0.00 0.00 35.88 3.36
2454 2507 7.335924 CCGACCATTAAAGACTTAATTTCAGGA 59.664 37.037 0.00 0.00 35.88 3.86
2455 2508 7.120726 ACCGACCATTAAAGACTTAATTTCAGG 59.879 37.037 0.00 0.00 35.88 3.86
2456 2509 8.040716 ACCGACCATTAAAGACTTAATTTCAG 57.959 34.615 0.00 0.00 35.88 3.02
2457 2510 7.989416 ACCGACCATTAAAGACTTAATTTCA 57.011 32.000 0.00 0.00 35.88 2.69
2458 2511 9.374838 TCTACCGACCATTAAAGACTTAATTTC 57.625 33.333 0.00 0.00 35.88 2.17
2459 2512 9.379791 CTCTACCGACCATTAAAGACTTAATTT 57.620 33.333 0.00 0.00 35.88 1.82
2460 2513 8.755977 TCTCTACCGACCATTAAAGACTTAATT 58.244 33.333 0.00 0.00 35.88 1.40
2461 2514 8.302515 TCTCTACCGACCATTAAAGACTTAAT 57.697 34.615 0.00 0.00 38.09 1.40
2462 2515 7.395489 ACTCTCTACCGACCATTAAAGACTTAA 59.605 37.037 0.00 0.00 0.00 1.85
2463 2516 6.888632 ACTCTCTACCGACCATTAAAGACTTA 59.111 38.462 0.00 0.00 0.00 2.24
2464 2517 5.715753 ACTCTCTACCGACCATTAAAGACTT 59.284 40.000 0.00 0.00 0.00 3.01
2465 2518 5.262804 ACTCTCTACCGACCATTAAAGACT 58.737 41.667 0.00 0.00 0.00 3.24
2466 2519 5.579564 ACTCTCTACCGACCATTAAAGAC 57.420 43.478 0.00 0.00 0.00 3.01
2467 2520 6.600882 AAACTCTCTACCGACCATTAAAGA 57.399 37.500 0.00 0.00 0.00 2.52
2468 2521 8.943909 AATAAACTCTCTACCGACCATTAAAG 57.056 34.615 0.00 0.00 0.00 1.85
2469 2522 7.983484 GGAATAAACTCTCTACCGACCATTAAA 59.017 37.037 0.00 0.00 0.00 1.52
2470 2523 7.124599 TGGAATAAACTCTCTACCGACCATTAA 59.875 37.037 0.00 0.00 0.00 1.40
2471 2524 6.608405 TGGAATAAACTCTCTACCGACCATTA 59.392 38.462 0.00 0.00 0.00 1.90
2472 2525 5.424252 TGGAATAAACTCTCTACCGACCATT 59.576 40.000 0.00 0.00 0.00 3.16
2473 2526 4.960469 TGGAATAAACTCTCTACCGACCAT 59.040 41.667 0.00 0.00 0.00 3.55
2474 2527 4.159135 GTGGAATAAACTCTCTACCGACCA 59.841 45.833 0.00 0.00 0.00 4.02
2475 2528 4.159135 TGTGGAATAAACTCTCTACCGACC 59.841 45.833 0.00 0.00 0.00 4.79
2476 2529 5.125097 TCTGTGGAATAAACTCTCTACCGAC 59.875 44.000 0.00 0.00 0.00 4.79
2477 2530 5.258841 TCTGTGGAATAAACTCTCTACCGA 58.741 41.667 0.00 0.00 0.00 4.69
2478 2531 5.578005 TCTGTGGAATAAACTCTCTACCG 57.422 43.478 0.00 0.00 0.00 4.02
2479 2532 5.813157 GCTTCTGTGGAATAAACTCTCTACC 59.187 44.000 0.00 0.00 0.00 3.18
2480 2533 6.635755 AGCTTCTGTGGAATAAACTCTCTAC 58.364 40.000 0.00 0.00 0.00 2.59
2481 2534 6.859112 AGCTTCTGTGGAATAAACTCTCTA 57.141 37.500 0.00 0.00 0.00 2.43
2482 2535 5.753721 AGCTTCTGTGGAATAAACTCTCT 57.246 39.130 0.00 0.00 0.00 3.10
2483 2536 6.398918 TGTAGCTTCTGTGGAATAAACTCTC 58.601 40.000 0.00 0.00 0.00 3.20
2484 2537 6.360370 TGTAGCTTCTGTGGAATAAACTCT 57.640 37.500 0.00 0.00 0.00 3.24
2485 2538 8.894768 ATATGTAGCTTCTGTGGAATAAACTC 57.105 34.615 0.00 0.00 0.00 3.01
2489 2542 9.982651 GAGTTATATGTAGCTTCTGTGGAATAA 57.017 33.333 0.00 0.00 0.00 1.40
2490 2543 9.143155 TGAGTTATATGTAGCTTCTGTGGAATA 57.857 33.333 0.00 0.00 0.00 1.75
2491 2544 8.023021 TGAGTTATATGTAGCTTCTGTGGAAT 57.977 34.615 0.00 0.00 0.00 3.01
2492 2545 7.418337 TGAGTTATATGTAGCTTCTGTGGAA 57.582 36.000 0.00 0.00 0.00 3.53
2493 2546 7.418337 TTGAGTTATATGTAGCTTCTGTGGA 57.582 36.000 0.00 0.00 0.00 4.02
2494 2547 8.492673 TTTTGAGTTATATGTAGCTTCTGTGG 57.507 34.615 0.00 0.00 0.00 4.17
2513 2566 5.352569 AGACAATCGGCAACTCTATTTTGAG 59.647 40.000 0.00 0.00 39.78 3.02
2514 2567 5.122239 CAGACAATCGGCAACTCTATTTTGA 59.878 40.000 0.00 0.00 0.00 2.69
2515 2568 5.327091 CAGACAATCGGCAACTCTATTTTG 58.673 41.667 0.00 0.00 0.00 2.44
2516 2569 4.396166 CCAGACAATCGGCAACTCTATTTT 59.604 41.667 0.00 0.00 0.00 1.82
2517 2570 3.941483 CCAGACAATCGGCAACTCTATTT 59.059 43.478 0.00 0.00 0.00 1.40
2518 2571 3.535561 CCAGACAATCGGCAACTCTATT 58.464 45.455 0.00 0.00 0.00 1.73
2519 2572 3.185246 CCAGACAATCGGCAACTCTAT 57.815 47.619 0.00 0.00 0.00 1.98
2520 2573 2.672961 CCAGACAATCGGCAACTCTA 57.327 50.000 0.00 0.00 0.00 2.43
2521 2574 3.540211 CCAGACAATCGGCAACTCT 57.460 52.632 0.00 0.00 0.00 3.24
2528 2581 2.332063 ATACCTTGCCAGACAATCGG 57.668 50.000 0.00 0.00 37.72 4.18
2529 2582 4.051922 GAGTATACCTTGCCAGACAATCG 58.948 47.826 0.00 0.00 37.72 3.34
2530 2583 5.023533 TGAGTATACCTTGCCAGACAATC 57.976 43.478 0.00 0.00 37.72 2.67
2531 2584 5.636903 ATGAGTATACCTTGCCAGACAAT 57.363 39.130 0.00 0.00 37.72 2.71
2532 2585 5.045942 TGAATGAGTATACCTTGCCAGACAA 60.046 40.000 0.00 0.00 36.62 3.18
2533 2586 4.469586 TGAATGAGTATACCTTGCCAGACA 59.530 41.667 0.00 0.00 0.00 3.41
2534 2587 5.023533 TGAATGAGTATACCTTGCCAGAC 57.976 43.478 0.00 0.00 0.00 3.51
2535 2588 4.962362 TCTGAATGAGTATACCTTGCCAGA 59.038 41.667 0.00 5.21 0.00 3.86
2536 2589 5.282055 TCTGAATGAGTATACCTTGCCAG 57.718 43.478 0.00 2.96 0.00 4.85
2537 2590 4.443457 GCTCTGAATGAGTATACCTTGCCA 60.443 45.833 0.00 0.00 44.41 4.92
2538 2591 4.061596 GCTCTGAATGAGTATACCTTGCC 58.938 47.826 0.00 0.00 44.41 4.52
2539 2592 3.738282 CGCTCTGAATGAGTATACCTTGC 59.262 47.826 0.00 0.00 44.41 4.01
2540 2593 5.188327 TCGCTCTGAATGAGTATACCTTG 57.812 43.478 0.00 0.00 44.41 3.61
2541 2594 4.261825 GCTCGCTCTGAATGAGTATACCTT 60.262 45.833 0.00 0.00 44.41 3.50
2542 2595 3.254657 GCTCGCTCTGAATGAGTATACCT 59.745 47.826 0.00 0.00 44.41 3.08
2543 2596 3.570559 GCTCGCTCTGAATGAGTATACC 58.429 50.000 0.00 0.00 44.41 2.73
2544 2597 3.004839 TGGCTCGCTCTGAATGAGTATAC 59.995 47.826 0.00 0.00 44.41 1.47
2545 2598 3.222603 TGGCTCGCTCTGAATGAGTATA 58.777 45.455 7.41 0.00 44.41 1.47
2546 2599 2.034878 TGGCTCGCTCTGAATGAGTAT 58.965 47.619 7.41 0.00 44.41 2.12
2547 2600 1.474330 TGGCTCGCTCTGAATGAGTA 58.526 50.000 7.41 0.00 44.41 2.59
2548 2601 0.829333 ATGGCTCGCTCTGAATGAGT 59.171 50.000 7.41 0.00 44.41 3.41
2549 2602 2.799412 GTTATGGCTCGCTCTGAATGAG 59.201 50.000 2.37 2.37 45.33 2.90
2550 2603 2.432146 AGTTATGGCTCGCTCTGAATGA 59.568 45.455 0.00 0.00 0.00 2.57
2551 2604 2.543012 CAGTTATGGCTCGCTCTGAATG 59.457 50.000 0.00 0.00 0.00 2.67
2552 2605 2.169352 ACAGTTATGGCTCGCTCTGAAT 59.831 45.455 0.00 0.00 0.00 2.57
2553 2606 1.550524 ACAGTTATGGCTCGCTCTGAA 59.449 47.619 0.00 0.00 0.00 3.02
2554 2607 1.134995 CACAGTTATGGCTCGCTCTGA 60.135 52.381 0.00 0.00 0.00 3.27
2555 2608 1.284657 CACAGTTATGGCTCGCTCTG 58.715 55.000 0.00 0.00 0.00 3.35
2556 2609 0.898320 ACACAGTTATGGCTCGCTCT 59.102 50.000 0.00 0.00 0.00 4.09
2557 2610 1.002366 CACACAGTTATGGCTCGCTC 58.998 55.000 0.00 0.00 0.00 5.03
2558 2611 0.391661 CCACACAGTTATGGCTCGCT 60.392 55.000 0.00 0.00 0.00 4.93
2559 2612 2.089854 CCACACAGTTATGGCTCGC 58.910 57.895 0.00 0.00 0.00 5.03
2564 2617 2.198827 TCCAAGCCACACAGTTATGG 57.801 50.000 0.00 0.00 39.16 2.74
2565 2618 3.058016 CACTTCCAAGCCACACAGTTATG 60.058 47.826 0.00 0.00 0.00 1.90
2566 2619 3.149196 CACTTCCAAGCCACACAGTTAT 58.851 45.455 0.00 0.00 0.00 1.89
2567 2620 2.571212 CACTTCCAAGCCACACAGTTA 58.429 47.619 0.00 0.00 0.00 2.24
2568 2621 1.392589 CACTTCCAAGCCACACAGTT 58.607 50.000 0.00 0.00 0.00 3.16
2569 2622 1.103398 GCACTTCCAAGCCACACAGT 61.103 55.000 0.00 0.00 0.00 3.55
2570 2623 1.656441 GCACTTCCAAGCCACACAG 59.344 57.895 0.00 0.00 0.00 3.66
2571 2624 3.840437 GCACTTCCAAGCCACACA 58.160 55.556 0.00 0.00 0.00 3.72
2577 2630 0.251165 TAACAGGGGCACTTCCAAGC 60.251 55.000 0.00 0.00 36.21 4.01
2578 2631 1.351017 TCTAACAGGGGCACTTCCAAG 59.649 52.381 0.00 0.00 36.21 3.61
2579 2632 1.440618 TCTAACAGGGGCACTTCCAA 58.559 50.000 0.00 0.00 36.21 3.53
2580 2633 1.351017 CTTCTAACAGGGGCACTTCCA 59.649 52.381 0.00 0.00 36.21 3.53
2581 2634 1.950954 GCTTCTAACAGGGGCACTTCC 60.951 57.143 0.00 0.00 0.00 3.46
2582 2635 1.003696 AGCTTCTAACAGGGGCACTTC 59.996 52.381 0.00 0.00 0.00 3.01
2583 2636 1.068121 AGCTTCTAACAGGGGCACTT 58.932 50.000 0.00 0.00 0.00 3.16
2584 2637 1.834263 CTAGCTTCTAACAGGGGCACT 59.166 52.381 0.00 0.00 0.00 4.40
2585 2638 1.134371 CCTAGCTTCTAACAGGGGCAC 60.134 57.143 0.00 0.00 0.00 5.01
2586 2639 1.204146 CCTAGCTTCTAACAGGGGCA 58.796 55.000 0.00 0.00 0.00 5.36
2587 2640 0.470341 CCCTAGCTTCTAACAGGGGC 59.530 60.000 8.92 0.00 43.55 5.80
2590 2643 3.680196 GCAGAACCCTAGCTTCTAACAGG 60.680 52.174 0.00 0.00 0.00 4.00
2591 2644 3.526534 GCAGAACCCTAGCTTCTAACAG 58.473 50.000 0.00 0.00 0.00 3.16
2598 2651 1.489560 AACCGGCAGAACCCTAGCTT 61.490 55.000 0.00 0.00 33.26 3.74
2625 2678 3.051032 TCCATCCTTCCCCTACAATCTCT 60.051 47.826 0.00 0.00 0.00 3.10
2641 4121 0.747852 GTCCTCGTCTTCCTCCATCC 59.252 60.000 0.00 0.00 0.00 3.51
2694 4174 1.599047 CCTCTTCTCCACCACGCAT 59.401 57.895 0.00 0.00 0.00 4.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.