Multiple sequence alignment - TraesCS5D01G468800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G468800 chr5D 100.000 3710 0 0 1 3710 510097964 510094255 0.000000e+00 6852
1 TraesCS5D01G468800 chr5B 92.326 2958 99 46 181 3061 641100689 641097783 0.000000e+00 4087
2 TraesCS5D01G468800 chr5B 89.881 336 13 6 3363 3679 641097745 641097412 2.670000e-111 412
3 TraesCS5D01G468800 chr5B 82.160 213 24 12 3144 3345 363261175 363261384 1.770000e-38 171
4 TraesCS5D01G468800 chr5B 78.298 235 34 14 3126 3351 50231238 50231464 6.460000e-28 135
5 TraesCS5D01G468800 chr5A 95.595 2111 47 17 992 3089 638133908 638131831 0.000000e+00 3341
6 TraesCS5D01G468800 chr5A 85.472 826 43 31 196 985 638134769 638133985 0.000000e+00 789
7 TraesCS5D01G468800 chr5A 82.805 221 20 15 3147 3354 670399375 670399160 8.180000e-42 182
8 TraesCS5D01G468800 chr5A 78.049 328 38 19 3358 3675 638131565 638131262 3.810000e-40 176
9 TraesCS5D01G468800 chr6D 87.500 192 22 1 3093 3284 454801519 454801330 1.730000e-53 220
10 TraesCS5D01G468800 chr6D 94.118 68 4 0 3287 3354 454801268 454801201 1.820000e-18 104
11 TraesCS5D01G468800 chr3B 87.302 189 15 4 3103 3284 667047221 667047407 1.350000e-49 207
12 TraesCS5D01G468800 chr2B 86.559 186 23 2 3099 3284 75846660 75846477 1.750000e-48 204
13 TraesCS5D01G468800 chr2B 80.228 263 30 18 3093 3354 727316043 727315802 1.060000e-40 178
14 TraesCS5D01G468800 chr2B 94.118 68 4 0 3287 3354 75846414 75846347 1.820000e-18 104
15 TraesCS5D01G468800 chr2B 91.667 72 5 1 3303 3374 701759908 701759978 8.480000e-17 99
16 TraesCS5D01G468800 chr2D 90.780 141 13 0 3144 3284 384257076 384256936 4.890000e-44 189
17 TraesCS5D01G468800 chr2D 91.453 117 7 2 3093 3208 5193108 5192994 1.380000e-34 158
18 TraesCS5D01G468800 chr4B 80.074 271 35 15 3093 3351 188648466 188648729 2.280000e-42 183
19 TraesCS5D01G468800 chr7A 79.779 272 30 21 3093 3364 126943232 126942986 1.370000e-39 174
20 TraesCS5D01G468800 chr4D 90.076 131 11 1 3156 3284 182123590 182123720 6.370000e-38 169
21 TraesCS5D01G468800 chr1A 90.076 131 11 1 3156 3284 275851594 275851724 6.370000e-38 169
22 TraesCS5D01G468800 chr1B 86.525 141 11 6 3074 3208 316758726 316758588 8.300000e-32 148
23 TraesCS5D01G468800 chr6B 77.239 268 50 9 3093 3354 204938663 204938401 2.990000e-31 147
24 TraesCS5D01G468800 chr7D 95.522 67 2 1 3285 3351 412759794 412759859 5.070000e-19 106
25 TraesCS5D01G468800 chr3D 77.064 218 25 19 3201 3403 553739578 553739785 6.560000e-18 102


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G468800 chr5D 510094255 510097964 3709 True 6852.000000 6852 100.0000 1 3710 1 chr5D.!!$R1 3709
1 TraesCS5D01G468800 chr5B 641097412 641100689 3277 True 2249.500000 4087 91.1035 181 3679 2 chr5B.!!$R1 3498
2 TraesCS5D01G468800 chr5A 638131262 638134769 3507 True 1435.333333 3341 86.3720 196 3675 3 chr5A.!!$R2 3479

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
672 719 0.036875 CTTGAAGGGCGGAAGGAAGT 59.963 55.000 0.0 0.0 0.00 3.01 F
685 732 0.037232 AGGAAGTAGGCGAGCACAAC 60.037 55.000 0.0 0.0 0.00 3.32 F
686 733 0.320421 GGAAGTAGGCGAGCACAACA 60.320 55.000 0.0 0.0 0.00 3.33 F
688 735 0.602905 AAGTAGGCGAGCACAACACC 60.603 55.000 0.0 0.0 0.00 4.16 F
722 775 1.202359 GGAGAGCGCGAGAGATTTTCT 60.202 52.381 12.1 0.0 39.43 2.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2479 2629 0.462225 CTGAGCTGCACCTCCATCTG 60.462 60.000 6.57 0.0 0.00 2.90 R
2480 2630 1.624479 CCTGAGCTGCACCTCCATCT 61.624 60.000 6.57 0.0 0.00 2.90 R
2482 2632 2.677289 CCCTGAGCTGCACCTCCAT 61.677 63.158 6.57 0.0 0.00 3.41 R
2682 2841 3.321648 ATGGAGGCGTGCCACTGA 61.322 61.111 14.29 0.0 38.44 3.41 R
2738 2898 8.917088 ACAAAAAGAAAGAAATCATCAAGGAGA 58.083 29.630 0.00 0.0 0.00 3.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.875704 TCCCTTGTTGGTCCATGGA 58.124 52.632 11.44 11.44 32.74 3.41
19 20 1.381867 TCCCTTGTTGGTCCATGGAT 58.618 50.000 19.62 0.00 32.74 3.41
20 21 1.284785 TCCCTTGTTGGTCCATGGATC 59.715 52.381 19.62 19.20 32.74 3.36
21 22 1.285962 CCCTTGTTGGTCCATGGATCT 59.714 52.381 25.35 0.00 32.74 2.75
22 23 2.509548 CCCTTGTTGGTCCATGGATCTA 59.490 50.000 25.35 15.91 32.74 1.98
23 24 3.434167 CCCTTGTTGGTCCATGGATCTAG 60.434 52.174 25.35 15.84 32.74 2.43
24 25 3.200825 CCTTGTTGGTCCATGGATCTAGT 59.799 47.826 25.35 0.00 32.74 2.57
25 26 4.446371 CTTGTTGGTCCATGGATCTAGTC 58.554 47.826 25.35 12.97 0.00 2.59
26 27 2.430694 TGTTGGTCCATGGATCTAGTCG 59.569 50.000 25.35 0.00 0.00 4.18
27 28 2.431057 GTTGGTCCATGGATCTAGTCGT 59.569 50.000 25.35 0.00 0.00 4.34
28 29 3.588210 TGGTCCATGGATCTAGTCGTA 57.412 47.619 25.35 0.31 0.00 3.43
29 30 3.905968 TGGTCCATGGATCTAGTCGTAA 58.094 45.455 25.35 0.00 0.00 3.18
30 31 4.480115 TGGTCCATGGATCTAGTCGTAAT 58.520 43.478 25.35 0.00 0.00 1.89
31 32 4.899457 TGGTCCATGGATCTAGTCGTAATT 59.101 41.667 25.35 0.00 0.00 1.40
32 33 5.365605 TGGTCCATGGATCTAGTCGTAATTT 59.634 40.000 25.35 0.00 0.00 1.82
33 34 6.126883 TGGTCCATGGATCTAGTCGTAATTTT 60.127 38.462 25.35 0.00 0.00 1.82
34 35 6.766467 GGTCCATGGATCTAGTCGTAATTTTT 59.234 38.462 19.62 0.00 0.00 1.94
35 36 7.254795 GGTCCATGGATCTAGTCGTAATTTTTG 60.255 40.741 19.62 0.00 0.00 2.44
36 37 7.280205 GTCCATGGATCTAGTCGTAATTTTTGT 59.720 37.037 19.62 0.00 0.00 2.83
37 38 7.827236 TCCATGGATCTAGTCGTAATTTTTGTT 59.173 33.333 11.44 0.00 0.00 2.83
38 39 9.104965 CCATGGATCTAGTCGTAATTTTTGTTA 57.895 33.333 5.56 0.00 0.00 2.41
39 40 9.916397 CATGGATCTAGTCGTAATTTTTGTTAC 57.084 33.333 0.00 0.00 0.00 2.50
40 41 8.483307 TGGATCTAGTCGTAATTTTTGTTACC 57.517 34.615 0.00 0.00 32.24 2.85
41 42 8.316214 TGGATCTAGTCGTAATTTTTGTTACCT 58.684 33.333 0.00 0.00 32.24 3.08
42 43 8.815189 GGATCTAGTCGTAATTTTTGTTACCTC 58.185 37.037 0.00 0.00 32.24 3.85
43 44 9.583765 GATCTAGTCGTAATTTTTGTTACCTCT 57.416 33.333 0.00 0.00 32.24 3.69
44 45 9.939802 ATCTAGTCGTAATTTTTGTTACCTCTT 57.060 29.630 0.00 0.00 32.24 2.85
48 49 9.715121 AGTCGTAATTTTTGTTACCTCTTATGA 57.285 29.630 0.00 0.00 32.24 2.15
64 65 9.829507 ACCTCTTATGAATAGATTGAAAGTCTG 57.170 33.333 0.00 0.00 0.00 3.51
65 66 9.829507 CCTCTTATGAATAGATTGAAAGTCTGT 57.170 33.333 0.00 0.00 0.00 3.41
67 68 9.605275 TCTTATGAATAGATTGAAAGTCTGTGG 57.395 33.333 0.00 0.00 0.00 4.17
68 69 6.690194 ATGAATAGATTGAAAGTCTGTGGC 57.310 37.500 0.00 0.00 0.00 5.01
69 70 4.943705 TGAATAGATTGAAAGTCTGTGGCC 59.056 41.667 0.00 0.00 0.00 5.36
70 71 4.851639 ATAGATTGAAAGTCTGTGGCCT 57.148 40.909 3.32 0.00 0.00 5.19
71 72 5.957771 ATAGATTGAAAGTCTGTGGCCTA 57.042 39.130 3.32 0.00 0.00 3.93
72 73 4.640771 AGATTGAAAGTCTGTGGCCTAA 57.359 40.909 3.32 0.00 0.00 2.69
73 74 4.583871 AGATTGAAAGTCTGTGGCCTAAG 58.416 43.478 3.32 0.84 0.00 2.18
74 75 4.287067 AGATTGAAAGTCTGTGGCCTAAGA 59.713 41.667 3.32 3.76 0.00 2.10
75 76 4.431416 TTGAAAGTCTGTGGCCTAAGAA 57.569 40.909 3.32 0.00 0.00 2.52
76 77 4.431416 TGAAAGTCTGTGGCCTAAGAAA 57.569 40.909 3.32 0.00 0.00 2.52
77 78 4.787551 TGAAAGTCTGTGGCCTAAGAAAA 58.212 39.130 3.32 0.00 0.00 2.29
78 79 5.385198 TGAAAGTCTGTGGCCTAAGAAAAT 58.615 37.500 3.32 0.00 0.00 1.82
79 80 5.833131 TGAAAGTCTGTGGCCTAAGAAAATT 59.167 36.000 3.32 3.09 0.00 1.82
80 81 5.712152 AAGTCTGTGGCCTAAGAAAATTG 57.288 39.130 3.32 0.00 0.00 2.32
81 82 4.729868 AGTCTGTGGCCTAAGAAAATTGT 58.270 39.130 3.32 0.00 0.00 2.71
82 83 5.876357 AGTCTGTGGCCTAAGAAAATTGTA 58.124 37.500 3.32 0.00 0.00 2.41
83 84 5.940470 AGTCTGTGGCCTAAGAAAATTGTAG 59.060 40.000 3.32 0.00 0.00 2.74
84 85 4.700213 TCTGTGGCCTAAGAAAATTGTAGC 59.300 41.667 3.32 0.00 0.00 3.58
85 86 4.402829 TGTGGCCTAAGAAAATTGTAGCA 58.597 39.130 3.32 0.00 0.00 3.49
86 87 4.458989 TGTGGCCTAAGAAAATTGTAGCAG 59.541 41.667 3.32 0.00 0.00 4.24
87 88 4.700213 GTGGCCTAAGAAAATTGTAGCAGA 59.300 41.667 3.32 0.00 0.00 4.26
88 89 4.943705 TGGCCTAAGAAAATTGTAGCAGAG 59.056 41.667 3.32 0.00 0.00 3.35
89 90 5.186198 GGCCTAAGAAAATTGTAGCAGAGA 58.814 41.667 0.00 0.00 0.00 3.10
90 91 5.295540 GGCCTAAGAAAATTGTAGCAGAGAG 59.704 44.000 0.00 0.00 0.00 3.20
91 92 5.220758 GCCTAAGAAAATTGTAGCAGAGAGC 60.221 44.000 0.00 0.00 46.19 4.09
102 103 1.775869 GCAGAGAGCCTTGCAAAAAC 58.224 50.000 0.00 0.00 37.23 2.43
103 104 1.927710 GCAGAGAGCCTTGCAAAAACG 60.928 52.381 0.00 0.00 37.23 3.60
104 105 1.334869 CAGAGAGCCTTGCAAAAACGT 59.665 47.619 0.00 0.00 0.00 3.99
105 106 2.024414 AGAGAGCCTTGCAAAAACGTT 58.976 42.857 0.00 0.00 0.00 3.99
106 107 2.427095 AGAGAGCCTTGCAAAAACGTTT 59.573 40.909 7.96 7.96 0.00 3.60
107 108 2.789339 GAGAGCCTTGCAAAAACGTTTC 59.211 45.455 15.01 2.43 0.00 2.78
108 109 1.858458 GAGCCTTGCAAAAACGTTTCC 59.142 47.619 15.01 6.67 0.00 3.13
109 110 1.205893 AGCCTTGCAAAAACGTTTCCA 59.794 42.857 15.01 9.23 0.00 3.53
110 111 2.158971 AGCCTTGCAAAAACGTTTCCAT 60.159 40.909 15.01 0.90 0.00 3.41
111 112 3.068873 AGCCTTGCAAAAACGTTTCCATA 59.931 39.130 15.01 0.00 0.00 2.74
112 113 3.804873 GCCTTGCAAAAACGTTTCCATAA 59.195 39.130 15.01 7.20 0.00 1.90
113 114 4.271291 GCCTTGCAAAAACGTTTCCATAAA 59.729 37.500 15.01 5.16 0.00 1.40
114 115 5.220681 GCCTTGCAAAAACGTTTCCATAAAA 60.221 36.000 15.01 4.15 0.00 1.52
115 116 6.675728 GCCTTGCAAAAACGTTTCCATAAAAA 60.676 34.615 15.01 2.67 0.00 1.94
152 153 7.547227 ACATGTCAATTAAATTCTTAGGGTGC 58.453 34.615 0.00 0.00 0.00 5.01
153 154 6.524101 TGTCAATTAAATTCTTAGGGTGCC 57.476 37.500 0.00 0.00 0.00 5.01
154 155 5.124776 TGTCAATTAAATTCTTAGGGTGCCG 59.875 40.000 0.00 0.00 0.00 5.69
155 156 4.097286 TCAATTAAATTCTTAGGGTGCCGC 59.903 41.667 0.00 0.00 0.00 6.53
156 157 1.658994 TAAATTCTTAGGGTGCCGCG 58.341 50.000 0.00 0.00 0.00 6.46
157 158 1.654023 AAATTCTTAGGGTGCCGCGC 61.654 55.000 0.00 0.00 0.00 6.86
158 159 4.770874 TTCTTAGGGTGCCGCGCC 62.771 66.667 15.01 15.01 0.00 6.53
169 170 4.814294 CCGCGCCTCGTTAGCCTT 62.814 66.667 0.00 0.00 36.19 4.35
170 171 3.255379 CGCGCCTCGTTAGCCTTC 61.255 66.667 0.00 0.00 0.00 3.46
171 172 2.125673 GCGCCTCGTTAGCCTTCA 60.126 61.111 0.00 0.00 0.00 3.02
172 173 1.521681 GCGCCTCGTTAGCCTTCAT 60.522 57.895 0.00 0.00 0.00 2.57
173 174 1.491505 GCGCCTCGTTAGCCTTCATC 61.492 60.000 0.00 0.00 0.00 2.92
174 175 0.103208 CGCCTCGTTAGCCTTCATCT 59.897 55.000 0.00 0.00 0.00 2.90
175 176 1.859383 GCCTCGTTAGCCTTCATCTC 58.141 55.000 0.00 0.00 0.00 2.75
176 177 1.137086 GCCTCGTTAGCCTTCATCTCA 59.863 52.381 0.00 0.00 0.00 3.27
177 178 2.224161 GCCTCGTTAGCCTTCATCTCAT 60.224 50.000 0.00 0.00 0.00 2.90
178 179 3.648009 CCTCGTTAGCCTTCATCTCATC 58.352 50.000 0.00 0.00 0.00 2.92
179 180 3.553922 CCTCGTTAGCCTTCATCTCATCC 60.554 52.174 0.00 0.00 0.00 3.51
194 195 3.381590 TCTCATCCATGTAGACCAAGACG 59.618 47.826 0.00 0.00 0.00 4.18
239 240 8.450180 GCAATAAAAGAAAGAAAGAGAGAGAGG 58.550 37.037 0.00 0.00 0.00 3.69
244 250 4.703093 AGAAAGAAAGAGAGAGAGGGTACG 59.297 45.833 0.00 0.00 0.00 3.67
318 324 3.060615 CTGCACCTGCCTGCCTTC 61.061 66.667 0.00 0.00 41.18 3.46
319 325 4.666253 TGCACCTGCCTGCCTTCC 62.666 66.667 0.00 0.00 41.18 3.46
320 326 4.357279 GCACCTGCCTGCCTTCCT 62.357 66.667 0.00 0.00 34.31 3.36
321 327 2.360852 CACCTGCCTGCCTTCCTG 60.361 66.667 0.00 0.00 0.00 3.86
359 365 2.357323 GCAACTACTACTACGACTCCCC 59.643 54.545 0.00 0.00 0.00 4.81
408 414 1.845627 CTCACTGACACATGGGCCCT 61.846 60.000 25.70 5.48 0.00 5.19
409 415 1.676635 CACTGACACATGGGCCCTG 60.677 63.158 25.70 20.51 0.00 4.45
410 416 2.753043 CTGACACATGGGCCCTGC 60.753 66.667 25.70 9.88 0.00 4.85
610 623 1.039785 TCCATCTGAGCTCACTCCCG 61.040 60.000 13.74 2.51 42.74 5.14
611 624 1.039785 CCATCTGAGCTCACTCCCGA 61.040 60.000 13.74 8.81 42.74 5.14
653 693 2.711542 TCTTCTCCGCCATTTCTTTCC 58.288 47.619 0.00 0.00 0.00 3.13
661 705 2.094545 CGCCATTTCTTTCCTTGAAGGG 60.095 50.000 11.99 0.00 35.59 3.95
662 709 2.354103 GCCATTTCTTTCCTTGAAGGGC 60.354 50.000 11.99 0.00 37.99 5.19
672 719 0.036875 CTTGAAGGGCGGAAGGAAGT 59.963 55.000 0.00 0.00 0.00 3.01
676 723 1.911702 AAGGGCGGAAGGAAGTAGGC 61.912 60.000 0.00 0.00 0.00 3.93
677 724 2.202892 GGCGGAAGGAAGTAGGCG 60.203 66.667 0.00 0.00 0.00 5.52
678 725 2.718073 GGCGGAAGGAAGTAGGCGA 61.718 63.158 0.00 0.00 0.00 5.54
679 726 1.227002 GCGGAAGGAAGTAGGCGAG 60.227 63.158 0.00 0.00 0.00 5.03
680 727 1.227002 CGGAAGGAAGTAGGCGAGC 60.227 63.158 0.00 0.00 0.00 5.03
681 728 1.898154 GGAAGGAAGTAGGCGAGCA 59.102 57.895 0.00 0.00 0.00 4.26
682 729 0.460459 GGAAGGAAGTAGGCGAGCAC 60.460 60.000 0.00 0.00 0.00 4.40
683 730 0.246635 GAAGGAAGTAGGCGAGCACA 59.753 55.000 0.00 0.00 0.00 4.57
684 731 0.685097 AAGGAAGTAGGCGAGCACAA 59.315 50.000 0.00 0.00 0.00 3.33
685 732 0.037232 AGGAAGTAGGCGAGCACAAC 60.037 55.000 0.00 0.00 0.00 3.32
686 733 0.320421 GGAAGTAGGCGAGCACAACA 60.320 55.000 0.00 0.00 0.00 3.33
687 734 0.790814 GAAGTAGGCGAGCACAACAC 59.209 55.000 0.00 0.00 0.00 3.32
688 735 0.602905 AAGTAGGCGAGCACAACACC 60.603 55.000 0.00 0.00 0.00 4.16
689 736 1.301401 GTAGGCGAGCACAACACCA 60.301 57.895 0.00 0.00 0.00 4.17
690 737 1.301401 TAGGCGAGCACAACACCAC 60.301 57.895 0.00 0.00 0.00 4.16
691 738 2.725203 TAGGCGAGCACAACACCACC 62.725 60.000 0.00 0.00 0.00 4.61
692 739 3.660111 GCGAGCACAACACCACCC 61.660 66.667 0.00 0.00 0.00 4.61
693 740 3.345808 CGAGCACAACACCACCCG 61.346 66.667 0.00 0.00 0.00 5.28
694 741 3.660111 GAGCACAACACCACCCGC 61.660 66.667 0.00 0.00 0.00 6.13
722 775 1.202359 GGAGAGCGCGAGAGATTTTCT 60.202 52.381 12.10 0.00 39.43 2.52
759 812 2.272170 TCCCCCATCTTCCCTCCCT 61.272 63.158 0.00 0.00 0.00 4.20
788 861 4.953579 GTCTCTCTCTCTCTGGTTAATGGT 59.046 45.833 0.00 0.00 0.00 3.55
937 1010 2.024868 CAAATCCACACGCCGTCGA 61.025 57.895 0.00 0.00 39.41 4.20
987 1061 1.965930 CGCACCAGCAAAGCACCTA 60.966 57.895 0.00 0.00 42.27 3.08
1914 2064 3.744719 CTCCGGTCGAACTGCGGA 61.745 66.667 0.00 0.00 41.33 5.54
2478 2628 2.738695 GAGCTTCGAGCAGCAGCAC 61.739 63.158 11.49 0.00 45.56 4.40
2479 2629 3.797546 GCTTCGAGCAGCAGCACC 61.798 66.667 3.17 0.00 45.49 5.01
2480 2630 2.357881 CTTCGAGCAGCAGCACCA 60.358 61.111 3.17 0.00 45.49 4.17
2482 2632 2.776670 CTTCGAGCAGCAGCACCAGA 62.777 60.000 3.17 0.00 45.49 3.86
2483 2633 2.125229 CGAGCAGCAGCACCAGAT 60.125 61.111 3.17 0.00 45.49 2.90
2486 2636 2.045634 GCAGCAGCACCAGATGGA 60.046 61.111 5.72 0.00 41.58 3.41
2520 2673 2.101835 CGGCAATGGCAATGGCAAC 61.102 57.895 26.02 6.44 42.43 4.17
2682 2841 2.261671 GACGACTGCACCGTGGAT 59.738 61.111 13.31 0.00 40.67 3.41
2738 2898 6.492254 CAACTACGTAGCAAGGTTTTTCTTT 58.508 36.000 22.40 1.64 0.00 2.52
2883 3048 1.682451 ATGCATGCCATGGGTTCAGC 61.682 55.000 16.68 9.10 31.48 4.26
2888 3053 0.469705 TGCCATGGGTTCAGCACTTT 60.470 50.000 15.13 0.00 0.00 2.66
2891 3056 2.094675 CCATGGGTTCAGCACTTTAGG 58.905 52.381 2.85 0.00 0.00 2.69
2909 3074 8.859090 CACTTTAGGTAAGATGAGATGAGATCT 58.141 37.037 0.00 0.00 38.65 2.75
2913 3078 7.528996 AGGTAAGATGAGATGAGATCTTCTG 57.471 40.000 1.53 0.00 40.38 3.02
2915 3080 8.224025 AGGTAAGATGAGATGAGATCTTCTGTA 58.776 37.037 1.53 0.00 40.38 2.74
2916 3081 9.023962 GGTAAGATGAGATGAGATCTTCTGTAT 57.976 37.037 1.53 0.00 40.38 2.29
2922 3087 9.717994 ATGAGATGAGATCTTCTGTATATCCAT 57.282 33.333 1.53 0.00 40.38 3.41
2923 3088 9.544579 TGAGATGAGATCTTCTGTATATCCATT 57.455 33.333 1.53 0.00 40.38 3.16
2966 3131 7.750229 TGAATATAGGATTGCCTCATGAAAC 57.250 36.000 0.00 0.00 45.54 2.78
2968 3133 1.098050 AGGATTGCCTCATGAAACGC 58.902 50.000 0.00 0.00 42.19 4.84
3024 3189 3.438434 GCAGAAAACAGAGGAGGTGAATC 59.562 47.826 0.00 0.00 0.00 2.52
3032 3197 4.407296 ACAGAGGAGGTGAATCTATCCAAC 59.593 45.833 0.00 0.00 34.08 3.77
3033 3198 3.639094 AGAGGAGGTGAATCTATCCAACG 59.361 47.826 0.00 0.00 34.08 4.10
3034 3199 2.700897 AGGAGGTGAATCTATCCAACGG 59.299 50.000 0.00 0.00 34.08 4.44
3035 3200 2.698797 GGAGGTGAATCTATCCAACGGA 59.301 50.000 0.00 0.00 35.55 4.69
3036 3201 3.134081 GGAGGTGAATCTATCCAACGGAA 59.866 47.826 0.00 0.00 34.34 4.30
3037 3202 4.120589 GAGGTGAATCTATCCAACGGAAC 58.879 47.826 0.00 0.00 34.34 3.62
3040 3205 4.504858 GTGAATCTATCCAACGGAACTGT 58.495 43.478 0.00 0.00 34.34 3.55
3041 3206 4.935808 GTGAATCTATCCAACGGAACTGTT 59.064 41.667 0.00 0.00 34.34 3.16
3042 3207 5.411669 GTGAATCTATCCAACGGAACTGTTT 59.588 40.000 0.00 0.00 34.34 2.83
3043 3208 5.411361 TGAATCTATCCAACGGAACTGTTTG 59.589 40.000 0.00 0.00 34.34 2.93
3044 3209 4.345859 TCTATCCAACGGAACTGTTTGT 57.654 40.909 0.00 0.00 34.34 2.83
3092 3257 9.640963 CCCAATCTAATTACTGTAGTATAGCAC 57.359 37.037 0.00 0.00 0.00 4.40
3097 3262 5.961396 ATTACTGTAGTATAGCACTCCGG 57.039 43.478 0.00 0.00 38.80 5.14
3099 3264 3.212685 ACTGTAGTATAGCACTCCGGTC 58.787 50.000 0.00 0.00 38.80 4.79
3100 3265 2.553172 CTGTAGTATAGCACTCCGGTCC 59.447 54.545 0.00 0.00 38.80 4.46
3102 3267 3.392285 TGTAGTATAGCACTCCGGTCCTA 59.608 47.826 0.00 0.00 38.80 2.94
3103 3268 3.589951 AGTATAGCACTCCGGTCCTAA 57.410 47.619 0.00 0.00 28.33 2.69
3104 3269 3.907221 AGTATAGCACTCCGGTCCTAAA 58.093 45.455 0.00 0.00 28.33 1.85
3106 3271 5.638133 AGTATAGCACTCCGGTCCTAAATA 58.362 41.667 0.00 0.00 28.33 1.40
3107 3272 6.254522 AGTATAGCACTCCGGTCCTAAATAT 58.745 40.000 0.00 0.00 28.33 1.28
3108 3273 6.724905 AGTATAGCACTCCGGTCCTAAATATT 59.275 38.462 0.00 0.00 28.33 1.28
3109 3274 4.338379 AGCACTCCGGTCCTAAATATTC 57.662 45.455 0.00 0.00 0.00 1.75
3110 3275 3.057734 GCACTCCGGTCCTAAATATTCG 58.942 50.000 0.00 0.00 0.00 3.34
3112 3277 4.296690 CACTCCGGTCCTAAATATTCGTC 58.703 47.826 0.00 0.00 0.00 4.20
3113 3278 4.037684 CACTCCGGTCCTAAATATTCGTCT 59.962 45.833 0.00 0.00 0.00 4.18
3114 3279 4.648307 ACTCCGGTCCTAAATATTCGTCTT 59.352 41.667 0.00 0.00 0.00 3.01
3116 3281 5.981174 TCCGGTCCTAAATATTCGTCTTTT 58.019 37.500 0.00 0.00 0.00 2.27
3117 3282 6.408869 TCCGGTCCTAAATATTCGTCTTTTT 58.591 36.000 0.00 0.00 0.00 1.94
3140 3305 6.431198 TTTAGCGATTTCAAATGGACTACC 57.569 37.500 0.00 0.00 0.00 3.18
3194 3359 8.560374 AGAGTGTAGTTTTACTCATTTTGCTTC 58.440 33.333 7.09 0.00 44.41 3.86
3195 3360 7.649057 AGTGTAGTTTTACTCATTTTGCTTCC 58.351 34.615 0.00 0.00 0.00 3.46
3197 3362 8.780249 GTGTAGTTTTACTCATTTTGCTTCCTA 58.220 33.333 0.00 0.00 0.00 2.94
3198 3363 9.515226 TGTAGTTTTACTCATTTTGCTTCCTAT 57.485 29.630 0.00 0.00 0.00 2.57
3199 3364 9.774742 GTAGTTTTACTCATTTTGCTTCCTATG 57.225 33.333 0.00 0.00 0.00 2.23
3200 3365 8.409358 AGTTTTACTCATTTTGCTTCCTATGT 57.591 30.769 0.00 0.00 0.00 2.29
3201 3366 9.515226 AGTTTTACTCATTTTGCTTCCTATGTA 57.485 29.630 0.00 0.00 0.00 2.29
3202 3367 9.556030 GTTTTACTCATTTTGCTTCCTATGTAC 57.444 33.333 0.00 0.00 0.00 2.90
3203 3368 9.515226 TTTTACTCATTTTGCTTCCTATGTACT 57.485 29.630 0.00 0.00 0.00 2.73
3204 3369 8.718102 TTACTCATTTTGCTTCCTATGTACTC 57.282 34.615 0.00 0.00 0.00 2.59
3205 3370 6.116126 ACTCATTTTGCTTCCTATGTACTCC 58.884 40.000 0.00 0.00 0.00 3.85
3208 3373 6.823689 TCATTTTGCTTCCTATGTACTCCTTC 59.176 38.462 0.00 0.00 0.00 3.46
3209 3374 4.755266 TTGCTTCCTATGTACTCCTTCC 57.245 45.455 0.00 0.00 0.00 3.46
3210 3375 2.693591 TGCTTCCTATGTACTCCTTCCG 59.306 50.000 0.00 0.00 0.00 4.30
3212 3377 3.132467 GCTTCCTATGTACTCCTTCCGTT 59.868 47.826 0.00 0.00 0.00 4.44
3213 3378 4.737055 GCTTCCTATGTACTCCTTCCGTTC 60.737 50.000 0.00 0.00 0.00 3.95
3214 3379 3.294214 TCCTATGTACTCCTTCCGTTCC 58.706 50.000 0.00 0.00 0.00 3.62
3215 3380 3.053095 TCCTATGTACTCCTTCCGTTCCT 60.053 47.826 0.00 0.00 0.00 3.36
3217 3382 4.891756 CCTATGTACTCCTTCCGTTCCTAA 59.108 45.833 0.00 0.00 0.00 2.69
3218 3383 5.361857 CCTATGTACTCCTTCCGTTCCTAAA 59.638 44.000 0.00 0.00 0.00 1.85
3220 3385 7.232127 CCTATGTACTCCTTCCGTTCCTAAATA 59.768 40.741 0.00 0.00 0.00 1.40
3221 3386 7.613551 ATGTACTCCTTCCGTTCCTAAATAT 57.386 36.000 0.00 0.00 0.00 1.28
3222 3387 8.716674 ATGTACTCCTTCCGTTCCTAAATATA 57.283 34.615 0.00 0.00 0.00 0.86
3223 3388 8.537728 TGTACTCCTTCCGTTCCTAAATATAA 57.462 34.615 0.00 0.00 0.00 0.98
3224 3389 8.636213 TGTACTCCTTCCGTTCCTAAATATAAG 58.364 37.037 0.00 0.00 0.00 1.73
3225 3390 7.672122 ACTCCTTCCGTTCCTAAATATAAGT 57.328 36.000 0.00 0.00 0.00 2.24
3226 3391 7.724287 ACTCCTTCCGTTCCTAAATATAAGTC 58.276 38.462 0.00 0.00 0.00 3.01
3227 3392 7.564292 ACTCCTTCCGTTCCTAAATATAAGTCT 59.436 37.037 0.00 0.00 0.00 3.24
3228 3393 8.315220 TCCTTCCGTTCCTAAATATAAGTCTT 57.685 34.615 0.00 0.00 0.00 3.01
3229 3394 8.765517 TCCTTCCGTTCCTAAATATAAGTCTTT 58.234 33.333 0.00 0.00 0.00 2.52
3230 3395 9.043079 CCTTCCGTTCCTAAATATAAGTCTTTC 57.957 37.037 0.00 0.00 0.00 2.62
3231 3396 9.819267 CTTCCGTTCCTAAATATAAGTCTTTCT 57.181 33.333 0.00 0.00 0.00 2.52
3263 3428 9.602568 TTTCAATAAATAACTACATACGGAGCA 57.397 29.630 0.00 0.00 0.00 4.26
3264 3429 9.602568 TTCAATAAATAACTACATACGGAGCAA 57.397 29.630 0.00 0.00 0.00 3.91
3265 3430 9.602568 TCAATAAATAACTACATACGGAGCAAA 57.397 29.630 0.00 0.00 0.00 3.68
3269 3434 8.500753 AAATAACTACATACGGAGCAAAATGA 57.499 30.769 0.00 0.00 0.00 2.57
3270 3435 7.715265 ATAACTACATACGGAGCAAAATGAG 57.285 36.000 0.00 0.00 0.00 2.90
3271 3436 5.086104 ACTACATACGGAGCAAAATGAGT 57.914 39.130 0.00 0.00 0.00 3.41
3272 3437 4.870426 ACTACATACGGAGCAAAATGAGTG 59.130 41.667 0.00 0.00 0.00 3.51
3275 3440 4.943705 ACATACGGAGCAAAATGAGTGAAT 59.056 37.500 0.00 0.00 0.00 2.57
3276 3441 5.065218 ACATACGGAGCAAAATGAGTGAATC 59.935 40.000 0.00 0.00 0.00 2.52
3279 3444 4.631813 ACGGAGCAAAATGAGTGAATCTAC 59.368 41.667 0.00 0.00 0.00 2.59
3280 3445 4.631377 CGGAGCAAAATGAGTGAATCTACA 59.369 41.667 0.00 0.00 0.00 2.74
3281 3446 5.446473 CGGAGCAAAATGAGTGAATCTACAC 60.446 44.000 0.00 0.00 40.60 2.90
3294 3459 8.779354 AGTGAATCTACACTCATTTTAGGAAC 57.221 34.615 0.00 0.00 46.36 3.62
3296 3461 6.816640 TGAATCTACACTCATTTTAGGAACGG 59.183 38.462 0.00 0.00 0.00 4.44
3297 3462 5.988310 TCTACACTCATTTTAGGAACGGA 57.012 39.130 0.00 0.00 0.00 4.69
3298 3463 5.962433 TCTACACTCATTTTAGGAACGGAG 58.038 41.667 0.00 0.00 0.00 4.63
3299 3464 3.939066 ACACTCATTTTAGGAACGGAGG 58.061 45.455 0.00 0.00 0.00 4.30
3300 3465 3.270877 CACTCATTTTAGGAACGGAGGG 58.729 50.000 0.00 0.00 0.00 4.30
3301 3466 3.055385 CACTCATTTTAGGAACGGAGGGA 60.055 47.826 0.00 0.00 0.00 4.20
3302 3467 3.197983 ACTCATTTTAGGAACGGAGGGAG 59.802 47.826 0.00 0.00 0.00 4.30
3304 3469 4.355549 TCATTTTAGGAACGGAGGGAGTA 58.644 43.478 0.00 0.00 0.00 2.59
3306 3471 3.463048 TTTAGGAACGGAGGGAGTAGT 57.537 47.619 0.00 0.00 0.00 2.73
3307 3472 2.725221 TAGGAACGGAGGGAGTAGTC 57.275 55.000 0.00 0.00 0.00 2.59
3308 3473 0.702902 AGGAACGGAGGGAGTAGTCA 59.297 55.000 0.00 0.00 0.00 3.41
3309 3474 0.816373 GGAACGGAGGGAGTAGTCAC 59.184 60.000 0.00 0.00 0.00 3.67
3312 3477 1.546961 ACGGAGGGAGTAGTCACTTG 58.453 55.000 3.23 2.73 36.15 3.16
3313 3478 1.203025 ACGGAGGGAGTAGTCACTTGT 60.203 52.381 3.23 3.38 36.15 3.16
3314 3479 1.893801 CGGAGGGAGTAGTCACTTGTT 59.106 52.381 3.23 0.00 36.15 2.83
3315 3480 2.352814 CGGAGGGAGTAGTCACTTGTTG 60.353 54.545 3.23 0.00 36.15 3.33
3316 3481 2.897969 GGAGGGAGTAGTCACTTGTTGA 59.102 50.000 3.23 0.00 36.15 3.18
3317 3482 3.323979 GGAGGGAGTAGTCACTTGTTGAA 59.676 47.826 3.23 0.00 36.15 2.69
3318 3483 4.202326 GGAGGGAGTAGTCACTTGTTGAAA 60.202 45.833 3.23 0.00 36.15 2.69
3319 3484 5.513267 GGAGGGAGTAGTCACTTGTTGAAAT 60.513 44.000 3.23 0.00 36.15 2.17
3320 3485 5.552178 AGGGAGTAGTCACTTGTTGAAATC 58.448 41.667 0.00 0.00 29.00 2.17
3321 3486 5.308237 AGGGAGTAGTCACTTGTTGAAATCT 59.692 40.000 0.00 0.00 29.00 2.40
3322 3487 5.639931 GGGAGTAGTCACTTGTTGAAATCTC 59.360 44.000 0.00 0.00 35.39 2.75
3323 3488 6.459923 GGAGTAGTCACTTGTTGAAATCTCT 58.540 40.000 0.00 0.00 35.39 3.10
3324 3489 7.309867 GGGAGTAGTCACTTGTTGAAATCTCTA 60.310 40.741 0.00 0.00 35.39 2.43
3325 3490 7.757624 GGAGTAGTCACTTGTTGAAATCTCTAG 59.242 40.741 0.00 0.00 35.39 2.43
3326 3491 8.410673 AGTAGTCACTTGTTGAAATCTCTAGA 57.589 34.615 0.00 0.00 35.39 2.43
3328 3493 9.477484 GTAGTCACTTGTTGAAATCTCTAGAAA 57.523 33.333 0.00 0.00 35.39 2.52
3332 3497 8.204160 TCACTTGTTGAAATCTCTAGAAAGACA 58.796 33.333 0.00 0.00 0.00 3.41
3333 3498 8.830580 CACTTGTTGAAATCTCTAGAAAGACAA 58.169 33.333 0.00 0.00 0.00 3.18
3347 3512 9.595823 TCTAGAAAGACAAATATTTAGGAACGG 57.404 33.333 0.00 0.00 0.00 4.44
3351 3516 6.555463 AGACAAATATTTAGGAACGGAGGA 57.445 37.500 0.00 0.00 0.00 3.71
3352 3517 6.954232 AGACAAATATTTAGGAACGGAGGAA 58.046 36.000 0.00 0.00 0.00 3.36
3353 3518 7.048512 AGACAAATATTTAGGAACGGAGGAAG 58.951 38.462 0.00 0.00 0.00 3.46
3354 3519 6.954232 ACAAATATTTAGGAACGGAGGAAGA 58.046 36.000 0.00 0.00 0.00 2.87
3355 3520 7.048512 ACAAATATTTAGGAACGGAGGAAGAG 58.951 38.462 0.00 0.00 0.00 2.85
3356 3521 5.810080 ATATTTAGGAACGGAGGAAGAGG 57.190 43.478 0.00 0.00 0.00 3.69
3368 3533 6.787170 ACGGAGGAAGAGGTATATATGTGTA 58.213 40.000 0.00 0.00 0.00 2.90
3435 3600 1.214367 GTTACTCCCGTGTGTGTGTG 58.786 55.000 0.00 0.00 0.00 3.82
3436 3601 0.825410 TTACTCCCGTGTGTGTGTGT 59.175 50.000 0.00 0.00 0.00 3.72
3438 3603 1.153449 CTCCCGTGTGTGTGTGTGT 60.153 57.895 0.00 0.00 0.00 3.72
3441 3606 0.934496 CCCGTGTGTGTGTGTGTTAG 59.066 55.000 0.00 0.00 0.00 2.34
3442 3607 0.303493 CCGTGTGTGTGTGTGTTAGC 59.697 55.000 0.00 0.00 0.00 3.09
3443 3608 1.286501 CGTGTGTGTGTGTGTTAGCT 58.713 50.000 0.00 0.00 0.00 3.32
3444 3609 1.005032 CGTGTGTGTGTGTGTTAGCTG 60.005 52.381 0.00 0.00 0.00 4.24
3488 3658 3.459232 TGTTGAGACCTGTCAAGTCAG 57.541 47.619 4.43 0.00 37.12 3.51
3532 3704 2.187946 CGGGTCAGCATGGGACTC 59.812 66.667 0.00 0.00 36.16 3.36
3556 3728 2.030805 GCCAAAAAGCACATCGAGAAGT 60.031 45.455 0.00 0.00 0.00 3.01
3562 3734 5.499139 AAAGCACATCGAGAAGTGAAAAA 57.501 34.783 16.66 0.00 37.97 1.94
3563 3735 5.695851 AAGCACATCGAGAAGTGAAAAAT 57.304 34.783 16.66 0.00 37.97 1.82
3564 3736 6.801539 AAGCACATCGAGAAGTGAAAAATA 57.198 33.333 16.66 0.00 37.97 1.40
3571 3743 9.265901 ACATCGAGAAGTGAAAAATATAGGATG 57.734 33.333 0.00 0.00 0.00 3.51
3659 3858 3.146066 GGTGTTGATGCTTACCAACTCA 58.854 45.455 0.00 0.00 42.16 3.41
3679 3880 5.127356 ACTCATCTTAAAGGGAAGTACTCCG 59.873 44.000 0.00 0.00 46.51 4.63
3680 3881 5.266788 TCATCTTAAAGGGAAGTACTCCGA 58.733 41.667 0.00 0.00 46.51 4.55
3681 3882 5.360144 TCATCTTAAAGGGAAGTACTCCGAG 59.640 44.000 0.00 0.00 46.51 4.63
3682 3883 4.021916 TCTTAAAGGGAAGTACTCCGAGG 58.978 47.826 0.00 0.00 46.51 4.63
3683 3884 1.569653 AAAGGGAAGTACTCCGAGGG 58.430 55.000 0.00 0.00 46.51 4.30
3684 3885 0.708802 AAGGGAAGTACTCCGAGGGA 59.291 55.000 0.00 0.00 46.51 4.20
3697 3898 5.182169 CTCCGAGGGAGTAATATCCTAGT 57.818 47.826 3.45 0.00 44.25 2.57
3698 3899 6.310764 CTCCGAGGGAGTAATATCCTAGTA 57.689 45.833 3.45 0.00 44.25 1.82
3699 3900 6.902408 CTCCGAGGGAGTAATATCCTAGTAT 58.098 44.000 3.45 0.00 44.25 2.12
3700 3901 6.897986 TCCGAGGGAGTAATATCCTAGTATC 58.102 44.000 0.00 0.00 39.50 2.24
3701 3902 6.446110 TCCGAGGGAGTAATATCCTAGTATCA 59.554 42.308 0.00 0.00 39.50 2.15
3702 3903 7.129038 TCCGAGGGAGTAATATCCTAGTATCAT 59.871 40.741 0.00 0.00 39.50 2.45
3703 3904 8.438373 CCGAGGGAGTAATATCCTAGTATCATA 58.562 40.741 0.00 0.00 39.50 2.15
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.284785 GATCCATGGACCAACAAGGGA 59.715 52.381 18.99 1.38 43.89 4.20
1 2 1.285962 AGATCCATGGACCAACAAGGG 59.714 52.381 18.99 0.00 43.89 3.95
2 3 2.814805 AGATCCATGGACCAACAAGG 57.185 50.000 18.99 0.00 45.67 3.61
3 4 4.446371 GACTAGATCCATGGACCAACAAG 58.554 47.826 18.99 11.20 0.00 3.16
4 5 3.118775 CGACTAGATCCATGGACCAACAA 60.119 47.826 18.99 0.00 0.00 2.83
5 6 2.430694 CGACTAGATCCATGGACCAACA 59.569 50.000 18.99 0.00 0.00 3.33
6 7 2.431057 ACGACTAGATCCATGGACCAAC 59.569 50.000 18.99 9.16 0.00 3.77
7 8 2.747177 ACGACTAGATCCATGGACCAA 58.253 47.619 18.99 3.95 0.00 3.67
8 9 2.454336 ACGACTAGATCCATGGACCA 57.546 50.000 18.99 3.95 0.00 4.02
9 10 5.470047 AATTACGACTAGATCCATGGACC 57.530 43.478 18.99 7.53 0.00 4.46
10 11 7.280205 ACAAAAATTACGACTAGATCCATGGAC 59.720 37.037 18.99 11.34 0.00 4.02
11 12 7.335627 ACAAAAATTACGACTAGATCCATGGA 58.664 34.615 18.88 18.88 0.00 3.41
12 13 7.553881 ACAAAAATTACGACTAGATCCATGG 57.446 36.000 4.97 4.97 0.00 3.66
13 14 9.916397 GTAACAAAAATTACGACTAGATCCATG 57.084 33.333 0.00 0.00 0.00 3.66
14 15 9.106070 GGTAACAAAAATTACGACTAGATCCAT 57.894 33.333 0.00 0.00 36.14 3.41
15 16 8.316214 AGGTAACAAAAATTACGACTAGATCCA 58.684 33.333 0.00 0.00 36.14 3.41
16 17 8.713737 AGGTAACAAAAATTACGACTAGATCC 57.286 34.615 0.00 0.00 36.14 3.36
17 18 9.583765 AGAGGTAACAAAAATTACGACTAGATC 57.416 33.333 0.00 0.00 36.14 2.75
18 19 9.939802 AAGAGGTAACAAAAATTACGACTAGAT 57.060 29.630 0.00 0.00 36.14 1.98
22 23 9.715121 TCATAAGAGGTAACAAAAATTACGACT 57.285 29.630 0.00 0.00 36.14 4.18
38 39 9.829507 CAGACTTTCAATCTATTCATAAGAGGT 57.170 33.333 0.00 0.00 0.00 3.85
39 40 9.829507 ACAGACTTTCAATCTATTCATAAGAGG 57.170 33.333 0.00 0.00 0.00 3.69
41 42 9.605275 CCACAGACTTTCAATCTATTCATAAGA 57.395 33.333 0.00 0.00 0.00 2.10
42 43 8.341173 GCCACAGACTTTCAATCTATTCATAAG 58.659 37.037 0.00 0.00 0.00 1.73
43 44 7.283127 GGCCACAGACTTTCAATCTATTCATAA 59.717 37.037 0.00 0.00 0.00 1.90
44 45 6.767902 GGCCACAGACTTTCAATCTATTCATA 59.232 38.462 0.00 0.00 0.00 2.15
45 46 5.591877 GGCCACAGACTTTCAATCTATTCAT 59.408 40.000 0.00 0.00 0.00 2.57
46 47 4.943705 GGCCACAGACTTTCAATCTATTCA 59.056 41.667 0.00 0.00 0.00 2.57
47 48 5.189180 AGGCCACAGACTTTCAATCTATTC 58.811 41.667 5.01 0.00 0.00 1.75
48 49 5.184892 AGGCCACAGACTTTCAATCTATT 57.815 39.130 5.01 0.00 0.00 1.73
49 50 4.851639 AGGCCACAGACTTTCAATCTAT 57.148 40.909 5.01 0.00 0.00 1.98
50 51 5.483937 TCTTAGGCCACAGACTTTCAATCTA 59.516 40.000 5.01 0.00 0.00 1.98
51 52 4.287067 TCTTAGGCCACAGACTTTCAATCT 59.713 41.667 5.01 0.00 0.00 2.40
52 53 4.579869 TCTTAGGCCACAGACTTTCAATC 58.420 43.478 5.01 0.00 0.00 2.67
53 54 4.640771 TCTTAGGCCACAGACTTTCAAT 57.359 40.909 5.01 0.00 0.00 2.57
54 55 4.431416 TTCTTAGGCCACAGACTTTCAA 57.569 40.909 5.01 0.00 0.00 2.69
55 56 4.431416 TTTCTTAGGCCACAGACTTTCA 57.569 40.909 5.01 0.00 0.00 2.69
56 57 5.966742 ATTTTCTTAGGCCACAGACTTTC 57.033 39.130 5.01 0.00 0.00 2.62
57 58 5.598417 ACAATTTTCTTAGGCCACAGACTTT 59.402 36.000 5.01 0.00 0.00 2.66
58 59 5.140454 ACAATTTTCTTAGGCCACAGACTT 58.860 37.500 5.01 0.00 0.00 3.01
59 60 4.729868 ACAATTTTCTTAGGCCACAGACT 58.270 39.130 5.01 0.00 0.00 3.24
60 61 5.392057 GCTACAATTTTCTTAGGCCACAGAC 60.392 44.000 5.01 0.00 0.00 3.51
61 62 4.700213 GCTACAATTTTCTTAGGCCACAGA 59.300 41.667 5.01 1.86 0.00 3.41
62 63 4.458989 TGCTACAATTTTCTTAGGCCACAG 59.541 41.667 5.01 0.00 0.00 3.66
63 64 4.402829 TGCTACAATTTTCTTAGGCCACA 58.597 39.130 5.01 0.00 0.00 4.17
64 65 4.700213 TCTGCTACAATTTTCTTAGGCCAC 59.300 41.667 5.01 0.00 0.00 5.01
65 66 4.917385 TCTGCTACAATTTTCTTAGGCCA 58.083 39.130 5.01 0.00 0.00 5.36
66 67 5.186198 TCTCTGCTACAATTTTCTTAGGCC 58.814 41.667 0.00 0.00 0.00 5.19
67 68 5.220758 GCTCTCTGCTACAATTTTCTTAGGC 60.221 44.000 0.00 0.00 38.95 3.93
68 69 5.295540 GGCTCTCTGCTACAATTTTCTTAGG 59.704 44.000 0.00 0.00 42.39 2.69
69 70 6.112058 AGGCTCTCTGCTACAATTTTCTTAG 58.888 40.000 0.00 0.00 42.39 2.18
70 71 6.054860 AGGCTCTCTGCTACAATTTTCTTA 57.945 37.500 0.00 0.00 42.39 2.10
71 72 4.916183 AGGCTCTCTGCTACAATTTTCTT 58.084 39.130 0.00 0.00 42.39 2.52
72 73 4.566426 AGGCTCTCTGCTACAATTTTCT 57.434 40.909 0.00 0.00 42.39 2.52
73 74 4.673841 GCAAGGCTCTCTGCTACAATTTTC 60.674 45.833 2.44 0.00 42.39 2.29
74 75 3.192212 GCAAGGCTCTCTGCTACAATTTT 59.808 43.478 2.44 0.00 42.39 1.82
75 76 2.751806 GCAAGGCTCTCTGCTACAATTT 59.248 45.455 2.44 0.00 42.39 1.82
76 77 2.290514 TGCAAGGCTCTCTGCTACAATT 60.291 45.455 10.70 0.00 42.39 2.32
77 78 1.280133 TGCAAGGCTCTCTGCTACAAT 59.720 47.619 10.70 0.00 42.39 2.71
78 79 0.686789 TGCAAGGCTCTCTGCTACAA 59.313 50.000 10.70 0.00 42.39 2.41
79 80 0.686789 TTGCAAGGCTCTCTGCTACA 59.313 50.000 10.70 0.00 42.39 2.74
80 81 1.813513 TTTGCAAGGCTCTCTGCTAC 58.186 50.000 10.70 0.00 42.39 3.58
81 82 2.554032 GTTTTTGCAAGGCTCTCTGCTA 59.446 45.455 10.70 0.75 42.39 3.49
82 83 1.339291 GTTTTTGCAAGGCTCTCTGCT 59.661 47.619 10.70 0.00 42.39 4.24
83 84 1.775869 GTTTTTGCAAGGCTCTCTGC 58.224 50.000 0.00 2.70 41.94 4.26
84 85 1.334869 ACGTTTTTGCAAGGCTCTCTG 59.665 47.619 0.00 0.00 0.00 3.35
85 86 1.680338 ACGTTTTTGCAAGGCTCTCT 58.320 45.000 0.00 0.00 0.00 3.10
86 87 2.492019 AACGTTTTTGCAAGGCTCTC 57.508 45.000 0.00 0.00 0.00 3.20
87 88 2.481276 GGAAACGTTTTTGCAAGGCTCT 60.481 45.455 15.89 0.00 33.40 4.09
88 89 1.858458 GGAAACGTTTTTGCAAGGCTC 59.142 47.619 15.89 0.00 33.40 4.70
89 90 1.205893 TGGAAACGTTTTTGCAAGGCT 59.794 42.857 15.89 0.00 39.83 4.58
90 91 1.646189 TGGAAACGTTTTTGCAAGGC 58.354 45.000 15.89 0.00 39.83 4.35
91 92 5.975410 TTTATGGAAACGTTTTTGCAAGG 57.025 34.783 15.89 0.00 45.08 3.61
126 127 8.682710 GCACCCTAAGAATTTAATTGACATGTA 58.317 33.333 0.00 0.00 0.00 2.29
127 128 7.363793 GGCACCCTAAGAATTTAATTGACATGT 60.364 37.037 0.00 0.00 0.00 3.21
128 129 6.980397 GGCACCCTAAGAATTTAATTGACATG 59.020 38.462 0.00 0.00 0.00 3.21
129 130 6.183360 CGGCACCCTAAGAATTTAATTGACAT 60.183 38.462 0.00 0.00 0.00 3.06
130 131 5.124776 CGGCACCCTAAGAATTTAATTGACA 59.875 40.000 0.00 0.00 0.00 3.58
131 132 5.578776 CGGCACCCTAAGAATTTAATTGAC 58.421 41.667 0.00 0.00 0.00 3.18
132 133 4.097286 GCGGCACCCTAAGAATTTAATTGA 59.903 41.667 0.00 0.00 0.00 2.57
133 134 4.359706 GCGGCACCCTAAGAATTTAATTG 58.640 43.478 0.00 0.00 0.00 2.32
134 135 3.066203 CGCGGCACCCTAAGAATTTAATT 59.934 43.478 0.00 0.00 0.00 1.40
135 136 2.616842 CGCGGCACCCTAAGAATTTAAT 59.383 45.455 0.00 0.00 0.00 1.40
136 137 2.011222 CGCGGCACCCTAAGAATTTAA 58.989 47.619 0.00 0.00 0.00 1.52
137 138 1.658994 CGCGGCACCCTAAGAATTTA 58.341 50.000 0.00 0.00 0.00 1.40
138 139 1.654023 GCGCGGCACCCTAAGAATTT 61.654 55.000 8.83 0.00 0.00 1.82
139 140 2.112815 GCGCGGCACCCTAAGAATT 61.113 57.895 8.83 0.00 0.00 2.17
140 141 2.513897 GCGCGGCACCCTAAGAAT 60.514 61.111 8.83 0.00 0.00 2.40
141 142 4.770874 GGCGCGGCACCCTAAGAA 62.771 66.667 29.32 0.00 0.00 2.52
157 158 3.553922 GGATGAGATGAAGGCTAACGAGG 60.554 52.174 0.00 0.00 0.00 4.63
158 159 3.068732 TGGATGAGATGAAGGCTAACGAG 59.931 47.826 0.00 0.00 0.00 4.18
159 160 3.031013 TGGATGAGATGAAGGCTAACGA 58.969 45.455 0.00 0.00 0.00 3.85
160 161 3.459232 TGGATGAGATGAAGGCTAACG 57.541 47.619 0.00 0.00 0.00 3.18
161 162 4.712476 ACATGGATGAGATGAAGGCTAAC 58.288 43.478 0.00 0.00 0.00 2.34
162 163 5.840693 TCTACATGGATGAGATGAAGGCTAA 59.159 40.000 0.00 0.00 0.00 3.09
163 164 5.244851 GTCTACATGGATGAGATGAAGGCTA 59.755 44.000 0.00 0.00 0.00 3.93
164 165 4.040217 GTCTACATGGATGAGATGAAGGCT 59.960 45.833 0.00 0.00 0.00 4.58
165 166 4.314121 GTCTACATGGATGAGATGAAGGC 58.686 47.826 0.00 0.00 0.00 4.35
166 167 4.346127 TGGTCTACATGGATGAGATGAAGG 59.654 45.833 0.00 0.00 0.00 3.46
167 168 5.541953 TGGTCTACATGGATGAGATGAAG 57.458 43.478 0.00 0.00 0.00 3.02
168 169 5.662657 TCTTGGTCTACATGGATGAGATGAA 59.337 40.000 0.00 0.00 0.00 2.57
169 170 5.069648 GTCTTGGTCTACATGGATGAGATGA 59.930 44.000 0.00 0.00 0.00 2.92
170 171 5.295950 GTCTTGGTCTACATGGATGAGATG 58.704 45.833 0.00 0.00 0.00 2.90
171 172 4.038522 CGTCTTGGTCTACATGGATGAGAT 59.961 45.833 0.00 0.00 0.00 2.75
172 173 3.381590 CGTCTTGGTCTACATGGATGAGA 59.618 47.826 0.00 0.00 0.00 3.27
173 174 3.381590 TCGTCTTGGTCTACATGGATGAG 59.618 47.826 0.00 0.00 0.00 2.90
174 175 3.361786 TCGTCTTGGTCTACATGGATGA 58.638 45.455 0.00 0.00 0.00 2.92
175 176 3.801114 TCGTCTTGGTCTACATGGATG 57.199 47.619 0.00 0.00 0.00 3.51
176 177 4.819105 TTTCGTCTTGGTCTACATGGAT 57.181 40.909 0.00 0.00 0.00 3.41
177 178 4.282449 TCTTTTCGTCTTGGTCTACATGGA 59.718 41.667 0.00 0.00 0.00 3.41
178 179 4.566004 TCTTTTCGTCTTGGTCTACATGG 58.434 43.478 0.00 0.00 0.00 3.66
179 180 5.446473 GCATCTTTTCGTCTTGGTCTACATG 60.446 44.000 0.00 0.00 0.00 3.21
194 195 0.179129 CCACGCATGGGCATCTTTTC 60.179 55.000 10.10 0.00 43.04 2.29
239 240 2.088950 ACTGCAACATGTACCGTACC 57.911 50.000 0.00 0.00 0.00 3.34
244 250 6.796705 AGTAAACTTACTGCAACATGTACC 57.203 37.500 0.00 0.00 42.13 3.34
316 322 0.263172 TTCAAAAGGGTGGGCAGGAA 59.737 50.000 0.00 0.00 0.00 3.36
318 324 1.002315 CATTTCAAAAGGGTGGGCAGG 59.998 52.381 0.00 0.00 0.00 4.85
319 325 1.608801 GCATTTCAAAAGGGTGGGCAG 60.609 52.381 0.00 0.00 0.00 4.85
320 326 0.396060 GCATTTCAAAAGGGTGGGCA 59.604 50.000 0.00 0.00 0.00 5.36
321 327 0.396060 TGCATTTCAAAAGGGTGGGC 59.604 50.000 0.00 0.00 0.00 5.36
325 331 6.068670 AGTAGTAGTTGCATTTCAAAAGGGT 58.931 36.000 0.00 0.00 36.26 4.34
412 418 4.278513 TGGGGCCCTGTGTTTCGG 62.279 66.667 25.93 0.00 0.00 4.30
547 560 2.360852 ATGCACACTGCTGCTCCC 60.361 61.111 0.00 0.00 45.31 4.30
610 623 0.833949 GTGGAGGAGACAGGGGATTC 59.166 60.000 0.00 0.00 0.00 2.52
611 624 0.621862 GGTGGAGGAGACAGGGGATT 60.622 60.000 0.00 0.00 0.00 3.01
653 693 0.036875 ACTTCCTTCCGCCCTTCAAG 59.963 55.000 0.00 0.00 0.00 3.02
661 705 1.227002 CTCGCCTACTTCCTTCCGC 60.227 63.158 0.00 0.00 0.00 5.54
662 709 1.227002 GCTCGCCTACTTCCTTCCG 60.227 63.158 0.00 0.00 0.00 4.30
672 719 1.301401 GTGGTGTTGTGCTCGCCTA 60.301 57.895 0.00 0.00 36.54 3.93
676 723 3.345808 CGGGTGGTGTTGTGCTCG 61.346 66.667 0.00 0.00 0.00 5.03
677 724 3.660111 GCGGGTGGTGTTGTGCTC 61.660 66.667 0.00 0.00 0.00 4.26
759 812 4.145807 ACCAGAGAGAGAGAGACGAAAAA 58.854 43.478 0.00 0.00 0.00 1.94
910 983 3.244976 GCGTGTGGATTTGAATTGGAAG 58.755 45.455 0.00 0.00 0.00 3.46
987 1061 4.044390 ACCATGGCCTCCCTCCCT 62.044 66.667 13.04 0.00 0.00 4.20
1882 2032 1.296715 GGAGCCGACTTGGATGTGT 59.703 57.895 0.00 0.00 42.00 3.72
1914 2064 2.165167 CACTCCATGAACATGTTGCCT 58.835 47.619 17.58 0.00 37.11 4.75
1917 2067 2.094906 CAGGCACTCCATGAACATGTTG 60.095 50.000 17.58 1.90 34.60 3.33
2478 2628 1.153208 GAGCTGCACCTCCATCTGG 60.153 63.158 1.02 0.00 0.00 3.86
2479 2629 0.462225 CTGAGCTGCACCTCCATCTG 60.462 60.000 6.57 0.00 0.00 2.90
2480 2630 1.624479 CCTGAGCTGCACCTCCATCT 61.624 60.000 6.57 0.00 0.00 2.90
2482 2632 2.677289 CCCTGAGCTGCACCTCCAT 61.677 63.158 6.57 0.00 0.00 3.41
2483 2633 3.324930 CCCTGAGCTGCACCTCCA 61.325 66.667 6.57 0.00 0.00 3.86
2682 2841 3.321648 ATGGAGGCGTGCCACTGA 61.322 61.111 14.29 0.00 38.44 3.41
2738 2898 8.917088 ACAAAAAGAAAGAAATCATCAAGGAGA 58.083 29.630 0.00 0.00 0.00 3.71
2883 3048 8.859090 AGATCTCATCTCATCTTACCTAAAGTG 58.141 37.037 0.00 0.00 33.42 3.16
2888 3053 8.224025 ACAGAAGATCTCATCTCATCTTACCTA 58.776 37.037 0.00 0.00 39.09 3.08
2919 3084 8.173542 TCATTCACTCATTTATCCATGAATGG 57.826 34.615 19.27 2.68 46.91 3.16
2931 3096 8.800332 GGCAATCCTATATTCATTCACTCATTT 58.200 33.333 0.00 0.00 0.00 2.32
2937 3102 7.609146 TCATGAGGCAATCCTATATTCATTCAC 59.391 37.037 0.00 0.00 44.46 3.18
2966 3131 0.586319 AACCACAAATCAGTCACGCG 59.414 50.000 3.53 3.53 0.00 6.01
2968 3133 3.961477 TTCAACCACAAATCAGTCACG 57.039 42.857 0.00 0.00 0.00 4.35
3024 3189 5.432885 AAACAAACAGTTCCGTTGGATAG 57.567 39.130 2.60 0.00 40.26 2.08
3032 3197 3.963383 AGCAGTAAACAAACAGTTCCG 57.037 42.857 0.00 0.00 40.26 4.30
3033 3198 4.993905 ACAAGCAGTAAACAAACAGTTCC 58.006 39.130 0.00 0.00 40.26 3.62
3034 3199 6.548171 TGTACAAGCAGTAAACAAACAGTTC 58.452 36.000 0.00 0.00 40.26 3.01
3035 3200 6.503589 TGTACAAGCAGTAAACAAACAGTT 57.496 33.333 0.00 0.00 43.89 3.16
3036 3201 6.693315 ATGTACAAGCAGTAAACAAACAGT 57.307 33.333 0.00 0.00 33.72 3.55
3037 3202 8.289618 ACATATGTACAAGCAGTAAACAAACAG 58.710 33.333 6.56 0.00 33.72 3.16
3040 3205 8.615878 AGACATATGTACAAGCAGTAAACAAA 57.384 30.769 8.71 0.00 33.72 2.83
3041 3206 7.333423 GGAGACATATGTACAAGCAGTAAACAA 59.667 37.037 8.71 0.00 33.72 2.83
3042 3207 6.816640 GGAGACATATGTACAAGCAGTAAACA 59.183 38.462 8.71 0.00 33.72 2.83
3043 3208 6.258068 GGGAGACATATGTACAAGCAGTAAAC 59.742 42.308 8.71 0.00 33.72 2.01
3044 3209 6.070481 TGGGAGACATATGTACAAGCAGTAAA 60.070 38.462 8.71 0.00 33.72 2.01
3081 3246 2.861274 AGGACCGGAGTGCTATACTAC 58.139 52.381 9.46 0.00 43.82 2.73
3084 3249 4.868314 ATTTAGGACCGGAGTGCTATAC 57.132 45.455 9.46 0.00 45.17 1.47
3089 3254 3.057734 CGAATATTTAGGACCGGAGTGC 58.942 50.000 9.46 0.00 33.83 4.40
3090 3255 4.037684 AGACGAATATTTAGGACCGGAGTG 59.962 45.833 9.46 0.00 0.00 3.51
3092 3257 4.850347 AGACGAATATTTAGGACCGGAG 57.150 45.455 9.46 0.00 0.00 4.63
3093 3258 5.603170 AAAGACGAATATTTAGGACCGGA 57.397 39.130 9.46 0.00 0.00 5.14
3116 3281 6.431543 TGGTAGTCCATTTGAAATCGCTAAAA 59.568 34.615 0.00 0.00 39.03 1.52
3117 3282 5.941058 TGGTAGTCCATTTGAAATCGCTAAA 59.059 36.000 0.00 0.00 39.03 1.85
3118 3283 5.492895 TGGTAGTCCATTTGAAATCGCTAA 58.507 37.500 0.00 0.00 39.03 3.09
3119 3284 5.092554 TGGTAGTCCATTTGAAATCGCTA 57.907 39.130 0.00 0.00 39.03 4.26
3120 3285 3.950397 TGGTAGTCCATTTGAAATCGCT 58.050 40.909 0.00 0.00 39.03 4.93
3132 3297 9.788889 CTATATACATCCGTATATGGTAGTCCA 57.211 37.037 10.85 3.57 46.31 4.02
3166 3331 9.555727 AGCAAAATGAGTAAAACTACACTCTAA 57.444 29.630 3.65 0.00 41.46 2.10
3167 3332 9.555727 AAGCAAAATGAGTAAAACTACACTCTA 57.444 29.630 3.65 0.00 41.46 2.43
3168 3333 8.451908 AAGCAAAATGAGTAAAACTACACTCT 57.548 30.769 3.65 0.00 41.46 3.24
3170 3335 7.502561 AGGAAGCAAAATGAGTAAAACTACACT 59.497 33.333 0.00 0.00 0.00 3.55
3171 3336 7.649057 AGGAAGCAAAATGAGTAAAACTACAC 58.351 34.615 0.00 0.00 0.00 2.90
3174 3339 9.515226 ACATAGGAAGCAAAATGAGTAAAACTA 57.485 29.630 0.00 0.00 0.00 2.24
3175 3340 8.409358 ACATAGGAAGCAAAATGAGTAAAACT 57.591 30.769 0.00 0.00 0.00 2.66
3176 3341 9.556030 GTACATAGGAAGCAAAATGAGTAAAAC 57.444 33.333 0.00 0.00 0.00 2.43
3177 3342 9.515226 AGTACATAGGAAGCAAAATGAGTAAAA 57.485 29.630 0.00 0.00 0.00 1.52
3179 3344 7.769044 GGAGTACATAGGAAGCAAAATGAGTAA 59.231 37.037 0.00 0.00 0.00 2.24
3180 3345 7.125811 AGGAGTACATAGGAAGCAAAATGAGTA 59.874 37.037 0.00 0.00 0.00 2.59
3181 3346 6.069963 AGGAGTACATAGGAAGCAAAATGAGT 60.070 38.462 0.00 0.00 0.00 3.41
3184 3349 6.038714 GGAAGGAGTACATAGGAAGCAAAATG 59.961 42.308 0.00 0.00 0.00 2.32
3186 3351 5.497474 GGAAGGAGTACATAGGAAGCAAAA 58.503 41.667 0.00 0.00 0.00 2.44
3187 3352 4.382685 CGGAAGGAGTACATAGGAAGCAAA 60.383 45.833 0.00 0.00 0.00 3.68
3188 3353 3.132289 CGGAAGGAGTACATAGGAAGCAA 59.868 47.826 0.00 0.00 0.00 3.91
3189 3354 2.693591 CGGAAGGAGTACATAGGAAGCA 59.306 50.000 0.00 0.00 0.00 3.91
3190 3355 2.694109 ACGGAAGGAGTACATAGGAAGC 59.306 50.000 0.00 0.00 0.00 3.86
3194 3359 3.297736 AGGAACGGAAGGAGTACATAGG 58.702 50.000 0.00 0.00 0.00 2.57
3195 3360 6.461110 TTTAGGAACGGAAGGAGTACATAG 57.539 41.667 0.00 0.00 0.00 2.23
3197 3362 5.952347 ATTTAGGAACGGAAGGAGTACAT 57.048 39.130 0.00 0.00 0.00 2.29
3198 3363 8.537728 TTATATTTAGGAACGGAAGGAGTACA 57.462 34.615 0.00 0.00 0.00 2.90
3199 3364 8.637099 ACTTATATTTAGGAACGGAAGGAGTAC 58.363 37.037 0.00 0.00 0.00 2.73
3200 3365 8.773033 ACTTATATTTAGGAACGGAAGGAGTA 57.227 34.615 0.00 0.00 0.00 2.59
3201 3366 7.564292 AGACTTATATTTAGGAACGGAAGGAGT 59.436 37.037 0.00 0.00 0.00 3.85
3202 3367 7.953752 AGACTTATATTTAGGAACGGAAGGAG 58.046 38.462 0.00 0.00 0.00 3.69
3203 3368 7.909485 AGACTTATATTTAGGAACGGAAGGA 57.091 36.000 0.00 0.00 0.00 3.36
3204 3369 8.959705 AAAGACTTATATTTAGGAACGGAAGG 57.040 34.615 0.00 0.00 0.00 3.46
3205 3370 9.819267 AGAAAGACTTATATTTAGGAACGGAAG 57.181 33.333 0.00 0.00 0.00 3.46
3237 3402 9.602568 TGCTCCGTATGTAGTTATTTATTGAAA 57.397 29.630 0.00 0.00 0.00 2.69
3238 3403 9.602568 TTGCTCCGTATGTAGTTATTTATTGAA 57.397 29.630 0.00 0.00 0.00 2.69
3239 3404 9.602568 TTTGCTCCGTATGTAGTTATTTATTGA 57.397 29.630 0.00 0.00 0.00 2.57
3244 3409 8.500753 TCATTTTGCTCCGTATGTAGTTATTT 57.499 30.769 0.00 0.00 0.00 1.40
3246 3411 7.224753 CACTCATTTTGCTCCGTATGTAGTTAT 59.775 37.037 0.00 0.00 0.00 1.89
3248 3413 5.351465 CACTCATTTTGCTCCGTATGTAGTT 59.649 40.000 0.00 0.00 0.00 2.24
3250 3415 5.109210 TCACTCATTTTGCTCCGTATGTAG 58.891 41.667 0.00 0.00 0.00 2.74
3251 3416 5.079689 TCACTCATTTTGCTCCGTATGTA 57.920 39.130 0.00 0.00 0.00 2.29
3253 3418 4.944962 TTCACTCATTTTGCTCCGTATG 57.055 40.909 0.00 0.00 0.00 2.39
3254 3419 5.431765 AGATTCACTCATTTTGCTCCGTAT 58.568 37.500 0.00 0.00 0.00 3.06
3256 3421 3.679389 AGATTCACTCATTTTGCTCCGT 58.321 40.909 0.00 0.00 0.00 4.69
3257 3422 4.631377 TGTAGATTCACTCATTTTGCTCCG 59.369 41.667 0.00 0.00 0.00 4.63
3258 3423 5.645497 AGTGTAGATTCACTCATTTTGCTCC 59.355 40.000 0.00 0.00 44.07 4.70
3259 3424 6.734104 AGTGTAGATTCACTCATTTTGCTC 57.266 37.500 0.00 0.00 44.07 4.26
3270 3435 7.201530 CCGTTCCTAAAATGAGTGTAGATTCAC 60.202 40.741 0.00 0.00 38.46 3.18
3271 3436 6.816640 CCGTTCCTAAAATGAGTGTAGATTCA 59.183 38.462 0.00 0.00 0.00 2.57
3272 3437 7.039882 TCCGTTCCTAAAATGAGTGTAGATTC 58.960 38.462 0.00 0.00 0.00 2.52
3275 3440 5.105473 CCTCCGTTCCTAAAATGAGTGTAGA 60.105 44.000 0.00 0.00 0.00 2.59
3276 3441 5.109903 CCTCCGTTCCTAAAATGAGTGTAG 58.890 45.833 0.00 0.00 0.00 2.74
3279 3444 3.055385 TCCCTCCGTTCCTAAAATGAGTG 60.055 47.826 0.00 0.00 0.00 3.51
3280 3445 3.178865 TCCCTCCGTTCCTAAAATGAGT 58.821 45.455 0.00 0.00 0.00 3.41
3281 3446 3.197983 ACTCCCTCCGTTCCTAAAATGAG 59.802 47.826 0.00 0.00 0.00 2.90
3282 3447 3.178865 ACTCCCTCCGTTCCTAAAATGA 58.821 45.455 0.00 0.00 0.00 2.57
3283 3448 3.629142 ACTCCCTCCGTTCCTAAAATG 57.371 47.619 0.00 0.00 0.00 2.32
3284 3449 4.359996 ACTACTCCCTCCGTTCCTAAAAT 58.640 43.478 0.00 0.00 0.00 1.82
3285 3450 3.766051 GACTACTCCCTCCGTTCCTAAAA 59.234 47.826 0.00 0.00 0.00 1.52
3287 3452 2.309755 TGACTACTCCCTCCGTTCCTAA 59.690 50.000 0.00 0.00 0.00 2.69
3288 3453 1.918262 TGACTACTCCCTCCGTTCCTA 59.082 52.381 0.00 0.00 0.00 2.94
3289 3454 0.702902 TGACTACTCCCTCCGTTCCT 59.297 55.000 0.00 0.00 0.00 3.36
3290 3455 0.816373 GTGACTACTCCCTCCGTTCC 59.184 60.000 0.00 0.00 0.00 3.62
3291 3456 1.836802 AGTGACTACTCCCTCCGTTC 58.163 55.000 0.00 0.00 28.79 3.95
3292 3457 1.893801 CAAGTGACTACTCCCTCCGTT 59.106 52.381 0.00 0.00 35.69 4.44
3293 3458 1.203025 ACAAGTGACTACTCCCTCCGT 60.203 52.381 0.00 0.00 35.69 4.69
3294 3459 1.546961 ACAAGTGACTACTCCCTCCG 58.453 55.000 0.00 0.00 35.69 4.63
3296 3461 4.602340 TTCAACAAGTGACTACTCCCTC 57.398 45.455 0.00 0.00 35.69 4.30
3297 3462 5.308237 AGATTTCAACAAGTGACTACTCCCT 59.692 40.000 0.00 0.00 35.69 4.20
3298 3463 5.552178 AGATTTCAACAAGTGACTACTCCC 58.448 41.667 0.00 0.00 35.69 4.30
3299 3464 6.459923 AGAGATTTCAACAAGTGACTACTCC 58.540 40.000 0.00 0.00 35.69 3.85
3300 3465 8.516234 TCTAGAGATTTCAACAAGTGACTACTC 58.484 37.037 0.00 0.00 35.69 2.59
3301 3466 8.410673 TCTAGAGATTTCAACAAGTGACTACT 57.589 34.615 0.00 0.00 39.32 2.57
3302 3467 9.477484 TTTCTAGAGATTTCAACAAGTGACTAC 57.523 33.333 0.00 0.00 35.39 2.73
3304 3469 8.424918 TCTTTCTAGAGATTTCAACAAGTGACT 58.575 33.333 0.00 0.00 35.39 3.41
3306 3471 8.204160 TGTCTTTCTAGAGATTTCAACAAGTGA 58.796 33.333 0.00 0.00 0.00 3.41
3307 3472 8.370493 TGTCTTTCTAGAGATTTCAACAAGTG 57.630 34.615 0.00 0.00 0.00 3.16
3308 3473 8.964476 TTGTCTTTCTAGAGATTTCAACAAGT 57.036 30.769 0.00 0.00 0.00 3.16
3321 3486 9.595823 CCGTTCCTAAATATTTGTCTTTCTAGA 57.404 33.333 11.05 0.00 0.00 2.43
3322 3487 9.595823 TCCGTTCCTAAATATTTGTCTTTCTAG 57.404 33.333 11.05 0.00 0.00 2.43
3323 3488 9.595823 CTCCGTTCCTAAATATTTGTCTTTCTA 57.404 33.333 11.05 0.00 0.00 2.10
3324 3489 7.553044 CCTCCGTTCCTAAATATTTGTCTTTCT 59.447 37.037 11.05 0.00 0.00 2.52
3325 3490 7.551617 TCCTCCGTTCCTAAATATTTGTCTTTC 59.448 37.037 11.05 0.00 0.00 2.62
3326 3491 7.399634 TCCTCCGTTCCTAAATATTTGTCTTT 58.600 34.615 11.05 0.00 0.00 2.52
3328 3493 6.555463 TCCTCCGTTCCTAAATATTTGTCT 57.445 37.500 11.05 0.00 0.00 3.41
3332 3497 6.158169 ACCTCTTCCTCCGTTCCTAAATATTT 59.842 38.462 5.89 5.89 0.00 1.40
3333 3498 5.666265 ACCTCTTCCTCCGTTCCTAAATATT 59.334 40.000 0.00 0.00 0.00 1.28
3336 3501 3.451890 ACCTCTTCCTCCGTTCCTAAAT 58.548 45.455 0.00 0.00 0.00 1.40
3338 3503 2.617840 ACCTCTTCCTCCGTTCCTAA 57.382 50.000 0.00 0.00 0.00 2.69
3339 3504 3.967467 ATACCTCTTCCTCCGTTCCTA 57.033 47.619 0.00 0.00 0.00 2.94
3341 3506 5.715753 ACATATATACCTCTTCCTCCGTTCC 59.284 44.000 0.00 0.00 0.00 3.62
3342 3507 6.208994 ACACATATATACCTCTTCCTCCGTTC 59.791 42.308 0.00 0.00 0.00 3.95
3343 3508 6.075984 ACACATATATACCTCTTCCTCCGTT 58.924 40.000 0.00 0.00 0.00 4.44
3345 3510 7.556635 TGATACACATATATACCTCTTCCTCCG 59.443 40.741 0.00 0.00 0.00 4.63
3346 3511 8.824756 TGATACACATATATACCTCTTCCTCC 57.175 38.462 0.00 0.00 0.00 4.30
3352 3517 9.462606 TGTTCGATGATACACATATATACCTCT 57.537 33.333 0.00 0.00 39.56 3.69
3368 3533 5.666969 TTTCGACAAGTTTGTTCGATGAT 57.333 34.783 15.11 0.00 42.43 2.45
3435 3600 5.233263 GCTAGAATTCAGTAGCAGCTAACAC 59.767 44.000 17.47 0.00 41.21 3.32
3436 3601 5.105351 TGCTAGAATTCAGTAGCAGCTAACA 60.105 40.000 19.95 2.33 45.28 2.41
3438 3603 5.598416 TGCTAGAATTCAGTAGCAGCTAA 57.402 39.130 19.95 3.46 45.28 3.09
3444 3609 7.605691 ACATTCCATATGCTAGAATTCAGTAGC 59.394 37.037 16.15 16.15 41.81 3.58
3488 3658 2.742774 ACAATGACAAAAGGCGCTTTC 58.257 42.857 4.81 0.00 31.99 2.62
3532 3704 2.030893 TCTCGATGTGCTTTTTGGCAAG 60.031 45.455 0.00 0.00 44.18 4.01
3556 3728 7.229306 GTGACAGGCATCATCCTATATTTTTCA 59.771 37.037 0.00 0.00 33.95 2.69
3562 3734 4.594491 TGTGTGACAGGCATCATCCTATAT 59.406 41.667 0.00 0.00 33.95 0.86
3563 3735 3.966665 TGTGTGACAGGCATCATCCTATA 59.033 43.478 0.00 0.00 33.95 1.31
3564 3736 2.773661 TGTGTGACAGGCATCATCCTAT 59.226 45.455 0.00 0.00 33.95 2.57
3571 3743 1.609208 ACCTTTGTGTGACAGGCATC 58.391 50.000 0.00 0.00 0.00 3.91
3659 3858 4.650131 CCTCGGAGTACTTCCCTTTAAGAT 59.350 45.833 4.02 0.00 43.63 2.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.