Multiple sequence alignment - TraesCS5D01G468600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G468600 chr5D 100.000 3991 0 0 1 3991 509962195 509966185 0.000000e+00 7371.0
1 TraesCS5D01G468600 chr5D 92.000 125 10 0 1 125 347013474 347013350 4.100000e-40 176.0
2 TraesCS5D01G468600 chr5D 91.270 126 10 1 1 125 452361067 452361192 1.910000e-38 171.0
3 TraesCS5D01G468600 chr5D 90.400 125 12 0 1 125 480852840 480852964 8.870000e-37 165.0
4 TraesCS5D01G468600 chr5B 88.319 2260 151 60 200 2387 640882202 640884420 0.000000e+00 2606.0
5 TraesCS5D01G468600 chr5B 94.363 816 37 3 2512 3327 640884578 640885384 0.000000e+00 1243.0
6 TraesCS5D01G468600 chr5B 87.861 173 19 2 3472 3643 640885467 640885638 6.760000e-48 202.0
7 TraesCS5D01G468600 chr5A 95.798 1309 46 4 2027 3333 637621379 637622680 0.000000e+00 2104.0
8 TraesCS5D01G468600 chr5A 91.063 649 37 9 3353 3991 637622667 637623304 0.000000e+00 857.0
9 TraesCS5D01G468600 chr5A 91.760 534 23 8 790 1311 637618614 637619138 0.000000e+00 723.0
10 TraesCS5D01G468600 chr5A 87.978 549 22 17 200 723 637618082 637618611 3.410000e-170 608.0
11 TraesCS5D01G468600 chr5A 91.104 326 12 8 1711 2030 637619686 637620000 3.690000e-115 425.0
12 TraesCS5D01G468600 chr5A 85.674 356 37 6 1314 1659 637619174 637619525 2.930000e-96 363.0
13 TraesCS5D01G468600 chr5A 97.059 34 1 0 1676 1709 637619527 637619560 1.550000e-04 58.4
14 TraesCS5D01G468600 chr4D 79.673 551 74 23 1739 2275 422931785 422932311 2.930000e-96 363.0
15 TraesCS5D01G468600 chr4D 89.796 49 5 0 2670 2718 94697371 94697419 3.330000e-06 63.9
16 TraesCS5D01G468600 chr3D 87.783 221 20 7 2058 2275 17414851 17415067 6.620000e-63 252.0
17 TraesCS5D01G468600 chr3D 88.550 131 15 0 3 133 40549146 40549276 4.130000e-35 159.0
18 TraesCS5D01G468600 chr6D 88.462 208 20 4 2070 2275 323093218 323093013 8.560000e-62 248.0
19 TraesCS5D01G468600 chr6D 89.600 125 13 0 1 125 473510025 473509901 4.130000e-35 159.0
20 TraesCS5D01G468600 chr2D 88.462 208 20 4 2070 2275 60135982 60135777 8.560000e-62 248.0
21 TraesCS5D01G468600 chr1B 88.235 153 15 3 2123 2273 3879712 3879863 3.170000e-41 180.0
22 TraesCS5D01G468600 chr1B 90.400 125 11 1 1 125 670278750 670278873 3.190000e-36 163.0
23 TraesCS5D01G468600 chr1B 90.816 98 6 3 2127 2223 141640565 141640470 1.160000e-25 128.0
24 TraesCS5D01G468600 chr1A 85.246 183 12 1 3 170 301145957 301146139 1.470000e-39 174.0
25 TraesCS5D01G468600 chr1A 100.000 28 0 0 1329 1356 450562139 450562166 7.000000e-03 52.8
26 TraesCS5D01G468600 chr7D 91.200 125 11 0 1 125 159741115 159740991 1.910000e-38 171.0
27 TraesCS5D01G468600 chr7D 83.951 81 13 0 1329 1409 607041447 607041527 1.190000e-10 78.7
28 TraesCS5D01G468600 chr4B 90.400 125 12 0 1 125 545234652 545234528 8.870000e-37 165.0
29 TraesCS5D01G468600 chr7B 92.771 83 6 0 2123 2205 637653718 637653636 1.950000e-23 121.0
30 TraesCS5D01G468600 chr4A 86.207 58 8 0 2673 2730 485708554 485708497 3.330000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G468600 chr5D 509962195 509966185 3990 False 7371.000000 7371 100.000000 1 3991 1 chr5D.!!$F3 3990
1 TraesCS5D01G468600 chr5B 640882202 640885638 3436 False 1350.333333 2606 90.181000 200 3643 3 chr5B.!!$F1 3443
2 TraesCS5D01G468600 chr5A 637618082 637623304 5222 False 734.057143 2104 91.490857 200 3991 7 chr5A.!!$F1 3791
3 TraesCS5D01G468600 chr4D 422931785 422932311 526 False 363.000000 363 79.673000 1739 2275 1 chr4D.!!$F2 536

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
39 40 0.110056 CGAAATCAGCAGGTGCACAC 60.110 55.0 20.43 8.23 45.16 3.82 F
175 176 0.606604 ACGGGCGACATTGTCTACTT 59.393 50.0 14.54 0.00 0.00 2.24 F
1548 1647 0.317160 ACTTGTCGCCGTCAGATGAA 59.683 50.0 0.00 0.00 0.00 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1439 1537 0.036671 ACCTGTGCCGCTTAACTACC 60.037 55.000 0.0 0.0 0.00 3.18 R
1605 1704 1.164411 TATGGCACCGTCAAAAGCAG 58.836 50.000 0.0 0.0 0.00 4.24 R
3014 4689 1.227089 CCGAGAGATCCACGCAAGG 60.227 63.158 0.0 0.0 46.39 3.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 3.523142 GCAGATGCATCAGAATCTTCG 57.477 47.619 27.81 6.18 38.12 3.79
22 23 3.129109 GCAGATGCATCAGAATCTTCGA 58.871 45.455 27.81 0.00 38.12 3.71
23 24 3.558829 GCAGATGCATCAGAATCTTCGAA 59.441 43.478 27.81 0.00 38.12 3.71
24 25 4.034858 GCAGATGCATCAGAATCTTCGAAA 59.965 41.667 27.81 0.00 38.12 3.46
25 26 5.277876 GCAGATGCATCAGAATCTTCGAAAT 60.278 40.000 27.81 0.00 38.12 2.17
26 27 6.364261 CAGATGCATCAGAATCTTCGAAATC 58.636 40.000 27.81 0.00 38.12 2.17
27 28 6.018180 CAGATGCATCAGAATCTTCGAAATCA 60.018 38.462 27.81 0.00 38.12 2.57
28 29 5.729974 TGCATCAGAATCTTCGAAATCAG 57.270 39.130 0.00 0.00 0.00 2.90
29 30 4.034858 TGCATCAGAATCTTCGAAATCAGC 59.965 41.667 0.00 3.06 0.00 4.26
30 31 4.034858 GCATCAGAATCTTCGAAATCAGCA 59.965 41.667 0.00 0.00 0.00 4.41
31 32 5.739387 CATCAGAATCTTCGAAATCAGCAG 58.261 41.667 0.00 0.00 0.00 4.24
32 33 4.186926 TCAGAATCTTCGAAATCAGCAGG 58.813 43.478 0.00 0.00 0.00 4.85
33 34 3.937706 CAGAATCTTCGAAATCAGCAGGT 59.062 43.478 0.00 0.00 0.00 4.00
34 35 3.937706 AGAATCTTCGAAATCAGCAGGTG 59.062 43.478 0.00 0.00 0.00 4.00
35 36 1.442769 TCTTCGAAATCAGCAGGTGC 58.557 50.000 0.00 0.00 42.49 5.01
36 37 1.159285 CTTCGAAATCAGCAGGTGCA 58.841 50.000 4.48 0.00 45.16 4.57
37 38 0.874390 TTCGAAATCAGCAGGTGCAC 59.126 50.000 8.80 8.80 45.16 4.57
38 39 0.250252 TCGAAATCAGCAGGTGCACA 60.250 50.000 20.43 0.00 45.16 4.57
39 40 0.110056 CGAAATCAGCAGGTGCACAC 60.110 55.000 20.43 8.23 45.16 3.82
40 41 0.953727 GAAATCAGCAGGTGCACACA 59.046 50.000 20.43 0.00 45.16 3.72
41 42 0.670162 AAATCAGCAGGTGCACACAC 59.330 50.000 20.43 6.65 46.66 3.82
51 52 1.847818 GTGCACACACAACTACTCGA 58.152 50.000 13.17 0.00 46.61 4.04
52 53 2.404215 GTGCACACACAACTACTCGAT 58.596 47.619 13.17 0.00 46.61 3.59
53 54 2.155732 GTGCACACACAACTACTCGATG 59.844 50.000 13.17 0.00 46.61 3.84
54 55 2.035321 TGCACACACAACTACTCGATGA 59.965 45.455 0.00 0.00 0.00 2.92
55 56 3.254060 GCACACACAACTACTCGATGAT 58.746 45.455 0.00 0.00 0.00 2.45
56 57 3.304559 GCACACACAACTACTCGATGATC 59.695 47.826 0.00 0.00 0.00 2.92
57 58 4.738124 CACACACAACTACTCGATGATCT 58.262 43.478 0.00 0.00 0.00 2.75
58 59 5.164233 CACACACAACTACTCGATGATCTT 58.836 41.667 0.00 0.00 0.00 2.40
59 60 5.061435 CACACACAACTACTCGATGATCTTG 59.939 44.000 0.00 0.00 0.00 3.02
60 61 5.164233 CACACAACTACTCGATGATCTTGT 58.836 41.667 0.00 0.00 0.00 3.16
61 62 5.061435 CACACAACTACTCGATGATCTTGTG 59.939 44.000 16.53 16.53 41.69 3.33
62 63 4.564372 CACAACTACTCGATGATCTTGTGG 59.436 45.833 12.47 6.01 35.46 4.17
63 64 4.462834 ACAACTACTCGATGATCTTGTGGA 59.537 41.667 0.00 0.00 0.00 4.02
64 65 4.909696 ACTACTCGATGATCTTGTGGAG 57.090 45.455 0.00 0.00 0.00 3.86
65 66 4.274147 ACTACTCGATGATCTTGTGGAGT 58.726 43.478 12.65 12.65 37.25 3.85
66 67 5.437946 ACTACTCGATGATCTTGTGGAGTA 58.562 41.667 13.26 13.26 35.47 2.59
67 68 6.065374 ACTACTCGATGATCTTGTGGAGTAT 58.935 40.000 13.86 6.63 35.87 2.12
68 69 7.225011 ACTACTCGATGATCTTGTGGAGTATA 58.775 38.462 13.86 2.26 35.87 1.47
69 70 7.885922 ACTACTCGATGATCTTGTGGAGTATAT 59.114 37.037 13.86 7.20 35.87 0.86
70 71 6.918626 ACTCGATGATCTTGTGGAGTATATG 58.081 40.000 8.43 0.00 32.65 1.78
71 72 6.491745 ACTCGATGATCTTGTGGAGTATATGT 59.508 38.462 8.43 0.00 32.65 2.29
72 73 6.914259 TCGATGATCTTGTGGAGTATATGTC 58.086 40.000 0.00 0.00 0.00 3.06
73 74 5.797434 CGATGATCTTGTGGAGTATATGTCG 59.203 44.000 0.00 0.00 0.00 4.35
74 75 6.348540 CGATGATCTTGTGGAGTATATGTCGA 60.349 42.308 0.00 0.00 0.00 4.20
75 76 6.901081 TGATCTTGTGGAGTATATGTCGAT 57.099 37.500 0.00 0.00 0.00 3.59
76 77 6.914259 TGATCTTGTGGAGTATATGTCGATC 58.086 40.000 0.00 0.00 0.00 3.69
77 78 5.707242 TCTTGTGGAGTATATGTCGATCC 57.293 43.478 0.00 0.00 0.00 3.36
78 79 5.137551 TCTTGTGGAGTATATGTCGATCCA 58.862 41.667 0.00 0.00 37.71 3.41
79 80 5.775195 TCTTGTGGAGTATATGTCGATCCAT 59.225 40.000 5.04 0.00 41.81 3.41
80 81 6.946009 TCTTGTGGAGTATATGTCGATCCATA 59.054 38.462 5.04 1.92 41.81 2.74
81 82 7.450323 TCTTGTGGAGTATATGTCGATCCATAA 59.550 37.037 5.04 7.71 41.81 1.90
82 83 7.718334 TGTGGAGTATATGTCGATCCATAAT 57.282 36.000 5.04 0.00 41.81 1.28
83 84 7.547227 TGTGGAGTATATGTCGATCCATAATG 58.453 38.462 5.04 0.00 41.81 1.90
84 85 6.980978 GTGGAGTATATGTCGATCCATAATGG 59.019 42.308 5.04 0.00 41.81 3.16
85 86 5.986135 GGAGTATATGTCGATCCATAATGGC 59.014 44.000 0.40 0.00 37.47 4.40
86 87 6.406961 GGAGTATATGTCGATCCATAATGGCA 60.407 42.308 0.00 0.00 37.47 4.92
87 88 6.946340 AGTATATGTCGATCCATAATGGCAA 58.054 36.000 0.00 0.00 37.47 4.52
88 89 6.818644 AGTATATGTCGATCCATAATGGCAAC 59.181 38.462 0.00 0.00 37.47 4.17
89 90 2.571212 TGTCGATCCATAATGGCAACC 58.429 47.619 0.00 0.00 37.47 3.77
90 91 2.092699 TGTCGATCCATAATGGCAACCA 60.093 45.455 0.00 0.00 37.47 3.67
91 92 2.948979 GTCGATCCATAATGGCAACCAA 59.051 45.455 0.00 0.00 36.95 3.67
92 93 3.003689 GTCGATCCATAATGGCAACCAAG 59.996 47.826 0.00 0.00 36.95 3.61
93 94 2.294233 CGATCCATAATGGCAACCAAGG 59.706 50.000 0.00 0.00 36.95 3.61
94 95 3.565307 GATCCATAATGGCAACCAAGGA 58.435 45.455 0.00 0.00 36.95 3.36
95 96 3.017048 TCCATAATGGCAACCAAGGAG 57.983 47.619 0.00 0.00 36.95 3.69
96 97 1.410153 CCATAATGGCAACCAAGGAGC 59.590 52.381 0.00 0.00 36.95 4.70
102 103 1.079612 GCAACCAAGGAGCCAATGC 60.080 57.895 0.00 0.00 37.95 3.56
116 117 4.243007 GCCAATGCTTGAGTTTAACACT 57.757 40.909 0.00 0.00 34.22 3.55
117 118 4.620982 GCCAATGCTTGAGTTTAACACTT 58.379 39.130 0.00 0.00 32.38 3.16
118 119 4.681483 GCCAATGCTTGAGTTTAACACTTC 59.319 41.667 0.00 0.00 32.38 3.01
119 120 5.735922 GCCAATGCTTGAGTTTAACACTTCA 60.736 40.000 0.00 0.00 32.38 3.02
120 121 6.272318 CCAATGCTTGAGTTTAACACTTCAA 58.728 36.000 0.00 0.00 35.01 2.69
121 122 6.756074 CCAATGCTTGAGTTTAACACTTCAAA 59.244 34.615 0.00 0.00 35.01 2.69
122 123 7.439056 CCAATGCTTGAGTTTAACACTTCAAAT 59.561 33.333 0.00 0.00 35.01 2.32
123 124 9.462174 CAATGCTTGAGTTTAACACTTCAAATA 57.538 29.630 0.00 0.00 35.01 1.40
149 150 9.882996 AATATGTATGCTTGATACGAACATTTG 57.117 29.630 0.00 0.00 40.07 2.32
150 151 6.735678 TGTATGCTTGATACGAACATTTGT 57.264 33.333 0.00 0.00 40.07 2.83
151 152 7.139896 TGTATGCTTGATACGAACATTTGTT 57.860 32.000 0.00 0.00 40.07 2.83
152 153 8.257830 TGTATGCTTGATACGAACATTTGTTA 57.742 30.769 0.00 0.00 40.07 2.41
153 154 8.888716 TGTATGCTTGATACGAACATTTGTTAT 58.111 29.630 0.00 0.00 40.07 1.89
154 155 9.716507 GTATGCTTGATACGAACATTTGTTATT 57.283 29.630 0.00 0.00 38.56 1.40
157 158 9.549509 TGCTTGATACGAACATTTGTTATTTAC 57.450 29.630 0.00 0.00 38.56 2.01
158 159 8.721476 GCTTGATACGAACATTTGTTATTTACG 58.279 33.333 0.00 0.00 38.56 3.18
159 160 9.205916 CTTGATACGAACATTTGTTATTTACGG 57.794 33.333 0.00 0.00 38.56 4.02
160 161 7.686519 TGATACGAACATTTGTTATTTACGGG 58.313 34.615 0.00 0.00 38.56 5.28
161 162 4.725359 ACGAACATTTGTTATTTACGGGC 58.275 39.130 0.00 0.00 38.56 6.13
162 163 3.781846 CGAACATTTGTTATTTACGGGCG 59.218 43.478 0.00 0.00 38.56 6.13
163 164 4.435784 CGAACATTTGTTATTTACGGGCGA 60.436 41.667 0.00 0.00 38.56 5.54
164 165 4.345271 ACATTTGTTATTTACGGGCGAC 57.655 40.909 0.00 0.00 0.00 5.19
165 166 3.752222 ACATTTGTTATTTACGGGCGACA 59.248 39.130 0.00 0.00 0.00 4.35
166 167 4.396790 ACATTTGTTATTTACGGGCGACAT 59.603 37.500 0.00 0.00 0.00 3.06
167 168 5.106078 ACATTTGTTATTTACGGGCGACATT 60.106 36.000 0.00 0.00 0.00 2.71
168 169 4.343811 TTGTTATTTACGGGCGACATTG 57.656 40.909 0.00 0.00 0.00 2.82
169 170 3.336468 TGTTATTTACGGGCGACATTGT 58.664 40.909 0.00 0.00 0.00 2.71
170 171 3.371591 TGTTATTTACGGGCGACATTGTC 59.628 43.478 6.73 6.73 0.00 3.18
171 172 2.396590 ATTTACGGGCGACATTGTCT 57.603 45.000 14.54 0.00 0.00 3.41
172 173 3.530265 ATTTACGGGCGACATTGTCTA 57.470 42.857 14.54 0.00 0.00 2.59
173 174 2.282701 TTACGGGCGACATTGTCTAC 57.717 50.000 14.54 6.68 0.00 2.59
174 175 1.466856 TACGGGCGACATTGTCTACT 58.533 50.000 14.54 0.00 0.00 2.57
175 176 0.606604 ACGGGCGACATTGTCTACTT 59.393 50.000 14.54 0.00 0.00 2.24
176 177 1.001633 ACGGGCGACATTGTCTACTTT 59.998 47.619 14.54 0.00 0.00 2.66
177 178 1.393539 CGGGCGACATTGTCTACTTTG 59.606 52.381 14.54 0.00 0.00 2.77
178 179 2.423577 GGGCGACATTGTCTACTTTGT 58.576 47.619 14.54 0.00 0.00 2.83
179 180 2.812011 GGGCGACATTGTCTACTTTGTT 59.188 45.455 14.54 0.00 0.00 2.83
180 181 3.120304 GGGCGACATTGTCTACTTTGTTC 60.120 47.826 14.54 0.00 0.00 3.18
181 182 3.746492 GGCGACATTGTCTACTTTGTTCT 59.254 43.478 14.54 0.00 0.00 3.01
182 183 4.377431 GGCGACATTGTCTACTTTGTTCTG 60.377 45.833 14.54 0.00 0.00 3.02
183 184 4.377431 GCGACATTGTCTACTTTGTTCTGG 60.377 45.833 14.54 0.00 0.00 3.86
184 185 4.152402 CGACATTGTCTACTTTGTTCTGGG 59.848 45.833 14.54 0.00 0.00 4.45
185 186 5.048846 ACATTGTCTACTTTGTTCTGGGT 57.951 39.130 0.00 0.00 0.00 4.51
186 187 6.182507 ACATTGTCTACTTTGTTCTGGGTA 57.817 37.500 0.00 0.00 0.00 3.69
187 188 6.597562 ACATTGTCTACTTTGTTCTGGGTAA 58.402 36.000 0.00 0.00 0.00 2.85
188 189 7.057894 ACATTGTCTACTTTGTTCTGGGTAAA 58.942 34.615 0.00 0.00 0.00 2.01
189 190 6.930667 TTGTCTACTTTGTTCTGGGTAAAC 57.069 37.500 0.00 0.00 0.00 2.01
190 191 5.991861 TGTCTACTTTGTTCTGGGTAAACA 58.008 37.500 0.00 0.00 34.93 2.83
191 192 6.416415 TGTCTACTTTGTTCTGGGTAAACAA 58.584 36.000 0.00 0.00 43.03 2.83
197 198 4.911514 TGTTCTGGGTAAACAAAGAAGC 57.088 40.909 0.00 0.00 33.86 3.86
198 199 4.532834 TGTTCTGGGTAAACAAAGAAGCT 58.467 39.130 0.00 0.00 33.86 3.74
199 200 4.953579 TGTTCTGGGTAAACAAAGAAGCTT 59.046 37.500 0.00 0.00 33.86 3.74
200 201 6.123651 TGTTCTGGGTAAACAAAGAAGCTTA 58.876 36.000 0.00 0.00 33.86 3.09
201 202 6.775629 TGTTCTGGGTAAACAAAGAAGCTTAT 59.224 34.615 0.00 0.00 33.86 1.73
202 203 7.940137 TGTTCTGGGTAAACAAAGAAGCTTATA 59.060 33.333 0.00 0.00 33.86 0.98
203 204 8.789762 GTTCTGGGTAAACAAAGAAGCTTATAA 58.210 33.333 0.00 0.00 29.64 0.98
204 205 8.927675 TCTGGGTAAACAAAGAAGCTTATAAA 57.072 30.769 0.00 0.00 0.00 1.40
205 206 8.789762 TCTGGGTAAACAAAGAAGCTTATAAAC 58.210 33.333 0.00 0.00 0.00 2.01
206 207 8.466617 TGGGTAAACAAAGAAGCTTATAAACA 57.533 30.769 0.00 0.00 0.00 2.83
207 208 8.915036 TGGGTAAACAAAGAAGCTTATAAACAA 58.085 29.630 0.00 0.00 0.00 2.83
208 209 9.752961 GGGTAAACAAAGAAGCTTATAAACAAA 57.247 29.630 0.00 0.00 0.00 2.83
236 237 2.202987 CTCCACATCTCTGGCGCC 60.203 66.667 22.73 22.73 0.00 6.53
237 238 2.685017 TCCACATCTCTGGCGCCT 60.685 61.111 29.70 2.88 0.00 5.52
238 239 2.513204 CCACATCTCTGGCGCCTG 60.513 66.667 29.70 27.77 0.00 4.85
239 240 2.513204 CACATCTCTGGCGCCTGG 60.513 66.667 30.13 21.23 0.00 4.45
240 241 4.479993 ACATCTCTGGCGCCTGGC 62.480 66.667 30.13 9.11 42.51 4.85
243 244 2.976490 ATCTCTGGCGCCTGGCTTT 61.976 57.895 30.13 12.27 42.94 3.51
283 284 3.550678 GCATGCATAAAAGAAAGCTGAGC 59.449 43.478 14.21 0.00 0.00 4.26
289 290 0.606673 AAAGAAAGCTGAGCCGACCC 60.607 55.000 0.00 0.00 0.00 4.46
291 292 2.930562 AAAGCTGAGCCGACCCCT 60.931 61.111 0.00 0.00 0.00 4.79
404 418 1.302752 ATGCTCGCAGTTGCTTCCA 60.303 52.632 2.29 0.00 39.32 3.53
465 479 1.522668 GTACCAGCATGCACTCACAA 58.477 50.000 21.98 0.00 31.97 3.33
554 573 5.827797 TGAGTTTGCTTTACTCAAGGAACAT 59.172 36.000 11.85 0.00 46.54 2.71
710 748 4.126437 AGCTGGTAAAAAGCGCAATTTTT 58.874 34.783 23.13 21.43 45.59 1.94
725 763 6.183360 GCGCAATTTTTACTCGAGTACTAGTT 60.183 38.462 24.60 14.58 0.00 2.24
726 764 7.381839 CGCAATTTTTACTCGAGTACTAGTTC 58.618 38.462 24.60 10.41 0.00 3.01
737 775 8.093927 ACTCGAGTACTAGTTCTAAACAGTACT 58.906 37.037 18.46 21.48 46.56 2.73
738 776 8.249327 TCGAGTACTAGTTCTAAACAGTACTG 57.751 38.462 21.44 21.44 45.43 2.74
739 777 6.960431 CGAGTACTAGTTCTAAACAGTACTGC 59.040 42.308 22.90 17.98 45.43 4.40
740 778 7.148440 CGAGTACTAGTTCTAAACAGTACTGCT 60.148 40.741 22.90 8.03 45.43 4.24
756 794 7.753309 AGTACTGCTGACGAAGATATTAGAT 57.247 36.000 0.00 0.00 0.00 1.98
757 795 8.850007 AGTACTGCTGACGAAGATATTAGATA 57.150 34.615 0.00 0.00 0.00 1.98
758 796 9.286170 AGTACTGCTGACGAAGATATTAGATAA 57.714 33.333 0.00 0.00 0.00 1.75
760 798 8.978564 ACTGCTGACGAAGATATTAGATAATG 57.021 34.615 0.00 0.00 0.00 1.90
761 799 8.580720 ACTGCTGACGAAGATATTAGATAATGT 58.419 33.333 0.00 0.00 0.00 2.71
859 897 2.117206 TTCCCTGGCGCCACATTT 59.883 55.556 29.03 0.00 0.00 2.32
946 984 4.415596 CTCTTGGCATCTCTATCTACCCT 58.584 47.826 0.00 0.00 0.00 4.34
952 990 4.221924 GGCATCTCTATCTACCCTTCCTTC 59.778 50.000 0.00 0.00 0.00 3.46
1024 1073 3.321648 TGGTGATGGCTCTGGCGT 61.322 61.111 0.00 0.00 39.81 5.68
1203 1252 6.870965 AGTTTTCAGACTAGCTACACATCTTG 59.129 38.462 0.00 0.00 0.00 3.02
1204 1253 5.984695 TTCAGACTAGCTACACATCTTGT 57.015 39.130 0.00 0.00 42.84 3.16
1206 1255 5.955488 TCAGACTAGCTACACATCTTGTTC 58.045 41.667 0.00 0.00 39.91 3.18
1207 1256 5.105716 TCAGACTAGCTACACATCTTGTTCC 60.106 44.000 0.00 0.00 39.91 3.62
1208 1257 5.020132 AGACTAGCTACACATCTTGTTCCT 58.980 41.667 0.00 0.00 39.91 3.36
1209 1258 5.126384 AGACTAGCTACACATCTTGTTCCTC 59.874 44.000 0.00 0.00 39.91 3.71
1212 1261 4.093011 AGCTACACATCTTGTTCCTCTCT 58.907 43.478 0.00 0.00 39.91 3.10
1247 1304 6.560253 TTCCTTCTTGCTGAACTTTGATAC 57.440 37.500 0.00 0.00 0.00 2.24
1248 1305 5.620206 TCCTTCTTGCTGAACTTTGATACA 58.380 37.500 0.00 0.00 0.00 2.29
1249 1306 6.240894 TCCTTCTTGCTGAACTTTGATACAT 58.759 36.000 0.00 0.00 0.00 2.29
1250 1307 6.149973 TCCTTCTTGCTGAACTTTGATACATG 59.850 38.462 0.00 0.00 0.00 3.21
1290 1347 4.304110 ACTCTACGCGAAAGAATTGTGAA 58.696 39.130 15.93 0.00 0.00 3.18
1311 1368 3.668447 AGTTCTCTGTTTGTCGATGCAT 58.332 40.909 0.00 0.00 0.00 3.96
1312 1369 4.067896 AGTTCTCTGTTTGTCGATGCATT 58.932 39.130 0.00 0.00 0.00 3.56
1327 1417 9.123709 TGTCGATGCATTTTAAACAGTAAAATC 57.876 29.630 0.00 0.23 35.61 2.17
1390 1480 8.150296 AGGCTAAACTAACCTAGAAAAACGTTA 58.850 33.333 0.00 0.00 29.98 3.18
1429 1527 9.245962 CGGAGGTAATACTAGTGTGATTTAAAG 57.754 37.037 5.39 0.00 0.00 1.85
1439 1537 9.449719 ACTAGTGTGATTTAAAGAAATAGTGGG 57.550 33.333 0.00 0.00 35.33 4.61
1449 1547 8.797350 TTAAAGAAATAGTGGGGTAGTTAAGC 57.203 34.615 0.00 0.00 0.00 3.09
1456 1554 0.743345 GGGGTAGTTAAGCGGCACAG 60.743 60.000 1.45 0.00 0.00 3.66
1516 1615 5.819379 TCTCCATGATTACTGATGCAAAGAC 59.181 40.000 6.76 0.00 0.00 3.01
1548 1647 0.317160 ACTTGTCGCCGTCAGATGAA 59.683 50.000 0.00 0.00 0.00 2.57
1557 1656 3.736252 CGCCGTCAGATGAATACTTTAGG 59.264 47.826 0.00 0.00 0.00 2.69
1558 1657 4.058817 GCCGTCAGATGAATACTTTAGGG 58.941 47.826 0.00 0.00 0.00 3.53
1573 1672 0.398522 TAGGGATGCACCGTCCATCT 60.399 55.000 7.13 0.00 41.05 2.90
1574 1673 0.398522 AGGGATGCACCGTCCATCTA 60.399 55.000 7.13 0.00 41.05 1.98
1605 1704 3.935203 TCTTGCGTTCAGATGAAGAATCC 59.065 43.478 0.00 0.00 35.72 3.01
1613 1712 5.892160 TCAGATGAAGAATCCTGCTTTTG 57.108 39.130 0.00 0.00 35.72 2.44
1616 1715 4.394300 AGATGAAGAATCCTGCTTTTGACG 59.606 41.667 0.00 0.00 35.72 4.35
1617 1716 2.813754 TGAAGAATCCTGCTTTTGACGG 59.186 45.455 0.00 0.00 0.00 4.79
1624 1723 1.164411 CTGCTTTTGACGGTGCCATA 58.836 50.000 0.00 0.00 0.00 2.74
1674 1776 2.372172 AGCACTTTACCTACCTGCACTT 59.628 45.455 0.00 0.00 0.00 3.16
1679 1781 5.179555 CACTTTACCTACCTGCACTTTCTTC 59.820 44.000 0.00 0.00 0.00 2.87
1787 2013 4.905429 TGTGCACAGTATTTACATGACCT 58.095 39.130 17.42 0.00 0.00 3.85
1877 2123 0.801067 CGCCCTCCGTTACTTCTTCG 60.801 60.000 0.00 0.00 0.00 3.79
1953 2205 3.425577 AACTGCACATGCCATAAATCG 57.574 42.857 0.49 0.00 41.18 3.34
1989 2241 3.763897 GCCCCATTTATTGTTCTCACTGT 59.236 43.478 0.00 0.00 0.00 3.55
2011 2263 0.813210 GCTAGATCTGCCAGTGCACC 60.813 60.000 14.63 0.00 44.23 5.01
2012 2264 0.829333 CTAGATCTGCCAGTGCACCT 59.171 55.000 14.63 3.06 44.23 4.00
2013 2265 0.826715 TAGATCTGCCAGTGCACCTC 59.173 55.000 14.63 3.28 44.23 3.85
2014 2266 1.451028 GATCTGCCAGTGCACCTCC 60.451 63.158 14.63 1.99 44.23 4.30
2025 2277 3.076092 CACCTCCTGCCTGAGCTT 58.924 61.111 0.00 0.00 40.80 3.74
2340 3978 3.935828 GCCAGTGTACTCATTTCCTTCTC 59.064 47.826 0.00 0.00 0.00 2.87
2385 4023 1.066303 GTGATGCACGTTTTGGTTCCA 59.934 47.619 0.00 0.00 0.00 3.53
2426 4074 5.715753 TGATCATTTCATCCATTTGGTGTGA 59.284 36.000 0.00 0.56 36.34 3.58
2427 4075 6.210984 TGATCATTTCATCCATTTGGTGTGAA 59.789 34.615 12.74 12.74 38.28 3.18
2428 4076 6.608539 TCATTTCATCCATTTGGTGTGAAT 57.391 33.333 15.61 8.21 39.06 2.57
2429 4077 6.399743 TCATTTCATCCATTTGGTGTGAATG 58.600 36.000 15.61 15.19 39.06 2.67
2430 4078 5.804944 TTTCATCCATTTGGTGTGAATGT 57.195 34.783 15.61 0.00 39.06 2.71
2431 4079 4.787260 TCATCCATTTGGTGTGAATGTG 57.213 40.909 0.00 0.00 33.65 3.21
2434 4082 5.481122 TCATCCATTTGGTGTGAATGTGATT 59.519 36.000 0.00 0.00 33.65 2.57
2481 4129 7.662897 TCAGTTTTTAATTAATTTCCTGCGGT 58.337 30.769 5.91 0.00 0.00 5.68
3014 4689 1.595382 CATCCTCCATTCCGTCGGC 60.595 63.158 6.34 0.00 0.00 5.54
3241 4916 5.007682 TGCACCTTATCTCTGTTTTTACCC 58.992 41.667 0.00 0.00 0.00 3.69
3297 4972 8.604640 TTTTGTACCTGTGTTTCGTATATCAA 57.395 30.769 0.00 0.00 0.00 2.57
3405 5080 6.375736 TGTGATTTTTCTACTGTTGTTGGACA 59.624 34.615 0.00 0.00 0.00 4.02
3406 5081 7.068103 TGTGATTTTTCTACTGTTGTTGGACAT 59.932 33.333 0.00 0.00 0.00 3.06
3407 5082 7.920682 GTGATTTTTCTACTGTTGTTGGACATT 59.079 33.333 0.00 0.00 0.00 2.71
3408 5083 8.474025 TGATTTTTCTACTGTTGTTGGACATTT 58.526 29.630 0.00 0.00 0.00 2.32
3409 5084 9.313118 GATTTTTCTACTGTTGTTGGACATTTT 57.687 29.630 0.00 0.00 0.00 1.82
3410 5085 9.665719 ATTTTTCTACTGTTGTTGGACATTTTT 57.334 25.926 0.00 0.00 0.00 1.94
3460 5135 2.158726 GGTGGACTTAGGGTGTGTTTGA 60.159 50.000 0.00 0.00 0.00 2.69
3461 5136 2.876550 GTGGACTTAGGGTGTGTTTGAC 59.123 50.000 0.00 0.00 0.00 3.18
3468 5143 2.404559 AGGGTGTGTTTGACTCCAGTA 58.595 47.619 0.00 0.00 39.63 2.74
3512 5187 4.610333 TCTAGAAGTCTGCATTGTCCCTA 58.390 43.478 0.00 0.00 0.00 3.53
3553 5228 8.349568 GGTTTAAACCCAACTCTATCAGAATT 57.650 34.615 24.50 0.00 43.43 2.17
3627 5303 2.932404 CTCCTTAGGACCTTCCCCC 58.068 63.158 0.00 0.00 37.19 5.40
3678 5354 0.178935 CACCCCAACCAACCTCCAAT 60.179 55.000 0.00 0.00 0.00 3.16
3690 5366 4.263683 CCAACCTCCAATCTCTTCTTCCTT 60.264 45.833 0.00 0.00 0.00 3.36
3694 5370 4.165758 CCTCCAATCTCTTCTTCCTTCCAT 59.834 45.833 0.00 0.00 0.00 3.41
3714 5390 3.226884 TCGCCTAAGTGACTTTGCC 57.773 52.632 1.97 0.00 0.00 4.52
3715 5391 0.394938 TCGCCTAAGTGACTTTGCCA 59.605 50.000 1.97 0.00 0.00 4.92
3716 5392 1.003118 TCGCCTAAGTGACTTTGCCAT 59.997 47.619 1.97 0.00 0.00 4.40
3717 5393 1.398390 CGCCTAAGTGACTTTGCCATC 59.602 52.381 1.97 0.00 0.00 3.51
3718 5394 1.398390 GCCTAAGTGACTTTGCCATCG 59.602 52.381 1.97 0.00 0.00 3.84
3720 5396 2.673368 CCTAAGTGACTTTGCCATCGAC 59.327 50.000 1.97 0.00 0.00 4.20
3721 5397 2.254546 AAGTGACTTTGCCATCGACA 57.745 45.000 0.00 0.00 0.00 4.35
3742 5419 0.615331 CATGGACACTGCCTACCACT 59.385 55.000 0.00 0.00 35.19 4.00
3749 5426 1.215647 CTGCCTACCACTCCGTGTC 59.784 63.158 0.00 0.00 0.00 3.67
3767 5444 3.535962 CTCTCCCCTCCTCTGCGC 61.536 72.222 0.00 0.00 0.00 6.09
3775 5452 3.691744 CTCCTCTGCGCGACCTCAC 62.692 68.421 12.10 0.00 0.00 3.51
3809 5486 3.435186 GCCTCCCGAGCAAGTTGC 61.435 66.667 20.44 20.44 45.46 4.17
3853 5530 1.877443 GTGTGGTGCCATCGTTTAGTT 59.123 47.619 0.00 0.00 0.00 2.24
3880 5563 3.330720 CTCCCCCTCCCCACACAC 61.331 72.222 0.00 0.00 0.00 3.82
3895 5578 1.304254 CACACACCGTTGATGTCCAA 58.696 50.000 0.00 0.00 0.00 3.53
3942 5625 4.657408 TGGCACAAGCATCCCGCA 62.657 61.111 0.00 0.00 46.13 5.69
3962 5645 2.091112 CGATGCATCCTCCGATCGC 61.091 63.158 20.87 0.00 32.13 4.58
3969 5655 1.971505 ATCCTCCGATCGCAGCCAAA 61.972 55.000 10.32 0.00 0.00 3.28
3977 5663 4.093952 CGCAGCCAAAGTGCCTCG 62.094 66.667 0.00 0.00 37.67 4.63
3978 5664 2.669569 GCAGCCAAAGTGCCTCGA 60.670 61.111 0.00 0.00 34.67 4.04
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 3.129109 TCGAAGATTCTGATGCATCTGC 58.871 45.455 26.32 13.53 42.50 4.26
2 3 5.729974 TTTCGAAGATTCTGATGCATCTG 57.270 39.130 26.32 24.85 35.04 2.90
3 4 6.053650 TGATTTCGAAGATTCTGATGCATCT 58.946 36.000 26.32 7.08 35.04 2.90
4 5 6.296365 TGATTTCGAAGATTCTGATGCATC 57.704 37.500 20.14 20.14 35.04 3.91
6 7 4.034858 GCTGATTTCGAAGATTCTGATGCA 59.965 41.667 0.00 0.00 35.04 3.96
7 8 4.034858 TGCTGATTTCGAAGATTCTGATGC 59.965 41.667 0.00 2.98 35.04 3.91
8 9 5.277393 CCTGCTGATTTCGAAGATTCTGATG 60.277 44.000 0.00 0.00 35.04 3.07
10 11 4.186926 CCTGCTGATTTCGAAGATTCTGA 58.813 43.478 0.00 0.00 35.04 3.27
11 12 3.937706 ACCTGCTGATTTCGAAGATTCTG 59.062 43.478 0.00 3.10 35.04 3.02
12 13 3.937706 CACCTGCTGATTTCGAAGATTCT 59.062 43.478 0.00 0.00 35.04 2.40
13 14 3.486542 GCACCTGCTGATTTCGAAGATTC 60.487 47.826 0.00 0.00 38.21 2.52
14 15 2.421424 GCACCTGCTGATTTCGAAGATT 59.579 45.455 0.00 0.00 38.21 2.40
15 16 2.012673 GCACCTGCTGATTTCGAAGAT 58.987 47.619 0.00 0.00 38.21 2.40
16 17 1.270785 TGCACCTGCTGATTTCGAAGA 60.271 47.619 0.00 0.00 42.66 2.87
17 18 1.135859 GTGCACCTGCTGATTTCGAAG 60.136 52.381 5.22 0.00 42.66 3.79
18 19 0.874390 GTGCACCTGCTGATTTCGAA 59.126 50.000 5.22 0.00 42.66 3.71
19 20 0.250252 TGTGCACCTGCTGATTTCGA 60.250 50.000 15.69 0.00 42.66 3.71
20 21 0.110056 GTGTGCACCTGCTGATTTCG 60.110 55.000 15.69 0.00 42.66 3.46
21 22 0.953727 TGTGTGCACCTGCTGATTTC 59.046 50.000 15.69 0.00 42.66 2.17
22 23 0.670162 GTGTGTGCACCTGCTGATTT 59.330 50.000 15.69 0.00 42.66 2.17
23 24 0.466007 TGTGTGTGCACCTGCTGATT 60.466 50.000 15.69 0.00 44.65 2.57
24 25 0.466007 TTGTGTGTGCACCTGCTGAT 60.466 50.000 15.69 0.00 44.65 2.90
25 26 1.077858 TTGTGTGTGCACCTGCTGA 60.078 52.632 15.69 0.00 44.65 4.26
26 27 1.064621 GTTGTGTGTGCACCTGCTG 59.935 57.895 15.69 0.00 44.65 4.41
27 28 0.180171 TAGTTGTGTGTGCACCTGCT 59.820 50.000 15.69 6.54 44.65 4.24
28 29 0.307760 GTAGTTGTGTGTGCACCTGC 59.692 55.000 15.69 5.28 44.65 4.85
29 30 1.867233 GAGTAGTTGTGTGTGCACCTG 59.133 52.381 15.69 0.00 44.65 4.00
30 31 1.538204 CGAGTAGTTGTGTGTGCACCT 60.538 52.381 15.69 5.28 44.65 4.00
31 32 0.859232 CGAGTAGTTGTGTGTGCACC 59.141 55.000 15.69 6.37 44.65 5.01
32 33 1.847818 TCGAGTAGTTGTGTGTGCAC 58.152 50.000 10.75 10.75 45.44 4.57
33 34 2.035321 TCATCGAGTAGTTGTGTGTGCA 59.965 45.455 0.00 0.00 0.00 4.57
34 35 2.672714 TCATCGAGTAGTTGTGTGTGC 58.327 47.619 0.00 0.00 0.00 4.57
35 36 4.738124 AGATCATCGAGTAGTTGTGTGTG 58.262 43.478 0.00 0.00 0.00 3.82
36 37 5.164233 CAAGATCATCGAGTAGTTGTGTGT 58.836 41.667 0.00 0.00 0.00 3.72
37 38 5.061435 CACAAGATCATCGAGTAGTTGTGTG 59.939 44.000 16.40 10.19 38.84 3.82
38 39 5.164233 CACAAGATCATCGAGTAGTTGTGT 58.836 41.667 16.40 3.45 38.84 3.72
39 40 4.564372 CCACAAGATCATCGAGTAGTTGTG 59.436 45.833 17.17 17.17 41.79 3.33
40 41 4.462834 TCCACAAGATCATCGAGTAGTTGT 59.537 41.667 0.00 0.00 0.00 3.32
41 42 4.998788 TCCACAAGATCATCGAGTAGTTG 58.001 43.478 0.00 0.00 0.00 3.16
42 43 4.707448 ACTCCACAAGATCATCGAGTAGTT 59.293 41.667 0.00 0.00 0.00 2.24
43 44 4.274147 ACTCCACAAGATCATCGAGTAGT 58.726 43.478 0.00 0.00 0.00 2.73
44 45 4.909696 ACTCCACAAGATCATCGAGTAG 57.090 45.455 0.00 0.00 0.00 2.57
45 46 7.665974 ACATATACTCCACAAGATCATCGAGTA 59.334 37.037 0.00 3.37 37.27 2.59
46 47 6.491745 ACATATACTCCACAAGATCATCGAGT 59.508 38.462 0.00 1.15 34.99 4.18
47 48 6.918626 ACATATACTCCACAAGATCATCGAG 58.081 40.000 0.00 0.00 0.00 4.04
48 49 6.348540 CGACATATACTCCACAAGATCATCGA 60.349 42.308 0.00 0.00 0.00 3.59
49 50 5.797434 CGACATATACTCCACAAGATCATCG 59.203 44.000 0.00 0.00 0.00 3.84
50 51 6.914259 TCGACATATACTCCACAAGATCATC 58.086 40.000 0.00 0.00 0.00 2.92
51 52 6.901081 TCGACATATACTCCACAAGATCAT 57.099 37.500 0.00 0.00 0.00 2.45
52 53 6.071896 GGATCGACATATACTCCACAAGATCA 60.072 42.308 0.00 0.00 34.25 2.92
53 54 6.071896 TGGATCGACATATACTCCACAAGATC 60.072 42.308 0.00 0.00 31.19 2.75
54 55 5.775195 TGGATCGACATATACTCCACAAGAT 59.225 40.000 0.00 0.00 31.19 2.40
55 56 5.137551 TGGATCGACATATACTCCACAAGA 58.862 41.667 0.00 0.00 31.19 3.02
56 57 5.453567 TGGATCGACATATACTCCACAAG 57.546 43.478 0.00 0.00 31.19 3.16
57 58 7.533289 TTATGGATCGACATATACTCCACAA 57.467 36.000 3.86 0.00 38.74 3.33
58 59 7.363793 CCATTATGGATCGACATATACTCCACA 60.364 40.741 5.05 0.00 40.96 4.17
59 60 6.980978 CCATTATGGATCGACATATACTCCAC 59.019 42.308 5.05 0.00 40.96 4.02
60 61 6.406961 GCCATTATGGATCGACATATACTCCA 60.407 42.308 16.46 4.24 40.96 3.86
61 62 5.986135 GCCATTATGGATCGACATATACTCC 59.014 44.000 16.46 0.00 40.96 3.85
62 63 6.573434 TGCCATTATGGATCGACATATACTC 58.427 40.000 16.46 0.00 40.96 2.59
63 64 6.544928 TGCCATTATGGATCGACATATACT 57.455 37.500 16.46 0.00 40.96 2.12
64 65 6.037172 GGTTGCCATTATGGATCGACATATAC 59.963 42.308 16.46 0.00 40.96 1.47
65 66 6.112734 GGTTGCCATTATGGATCGACATATA 58.887 40.000 16.46 0.00 40.96 0.86
66 67 4.943705 GGTTGCCATTATGGATCGACATAT 59.056 41.667 16.46 0.00 40.96 1.78
67 68 4.202409 TGGTTGCCATTATGGATCGACATA 60.202 41.667 16.46 0.00 40.96 2.29
68 69 3.149196 GGTTGCCATTATGGATCGACAT 58.851 45.455 16.46 0.00 40.96 3.06
69 70 2.092699 TGGTTGCCATTATGGATCGACA 60.093 45.455 16.46 3.86 40.96 4.35
70 71 2.571212 TGGTTGCCATTATGGATCGAC 58.429 47.619 16.46 7.95 40.96 4.20
71 72 3.213506 CTTGGTTGCCATTATGGATCGA 58.786 45.455 16.46 0.00 40.96 3.59
72 73 2.294233 CCTTGGTTGCCATTATGGATCG 59.706 50.000 16.46 0.00 40.96 3.69
73 74 3.565307 TCCTTGGTTGCCATTATGGATC 58.435 45.455 16.46 3.98 40.96 3.36
74 75 3.569491 CTCCTTGGTTGCCATTATGGAT 58.431 45.455 16.46 0.00 40.96 3.41
75 76 2.949963 GCTCCTTGGTTGCCATTATGGA 60.950 50.000 16.46 0.00 40.96 3.41
76 77 1.410153 GCTCCTTGGTTGCCATTATGG 59.590 52.381 6.92 6.92 41.55 2.74
77 78 1.410153 GGCTCCTTGGTTGCCATTATG 59.590 52.381 16.60 0.00 45.46 1.90
78 79 1.780503 GGCTCCTTGGTTGCCATTAT 58.219 50.000 16.60 0.00 45.46 1.28
79 80 3.281332 GGCTCCTTGGTTGCCATTA 57.719 52.632 16.60 0.00 45.46 1.90
80 81 4.118584 GGCTCCTTGGTTGCCATT 57.881 55.556 16.60 0.00 45.46 3.16
83 84 1.593265 CATTGGCTCCTTGGTTGCC 59.407 57.895 15.35 15.35 46.26 4.52
84 85 1.079612 GCATTGGCTCCTTGGTTGC 60.080 57.895 0.00 0.00 36.96 4.17
123 124 9.882996 CAAATGTTCGTATCAAGCATACATATT 57.117 29.630 0.00 0.00 37.80 1.28
124 125 9.056005 ACAAATGTTCGTATCAAGCATACATAT 57.944 29.630 0.00 0.00 37.80 1.78
125 126 8.432110 ACAAATGTTCGTATCAAGCATACATA 57.568 30.769 0.00 0.00 37.80 2.29
126 127 7.320443 ACAAATGTTCGTATCAAGCATACAT 57.680 32.000 0.00 0.00 37.80 2.29
127 128 6.735678 ACAAATGTTCGTATCAAGCATACA 57.264 33.333 0.00 0.00 37.80 2.29
128 129 9.716507 AATAACAAATGTTCGTATCAAGCATAC 57.283 29.630 1.37 0.00 39.31 2.39
131 132 9.549509 GTAAATAACAAATGTTCGTATCAAGCA 57.450 29.630 1.37 0.00 39.31 3.91
132 133 8.721476 CGTAAATAACAAATGTTCGTATCAAGC 58.279 33.333 1.37 0.00 39.31 4.01
133 134 9.205916 CCGTAAATAACAAATGTTCGTATCAAG 57.794 33.333 1.37 0.00 39.31 3.02
134 135 8.176365 CCCGTAAATAACAAATGTTCGTATCAA 58.824 33.333 1.37 0.00 39.31 2.57
135 136 7.676807 GCCCGTAAATAACAAATGTTCGTATCA 60.677 37.037 1.37 0.00 39.31 2.15
136 137 6.630045 GCCCGTAAATAACAAATGTTCGTATC 59.370 38.462 1.37 0.00 39.31 2.24
137 138 6.488817 GCCCGTAAATAACAAATGTTCGTAT 58.511 36.000 1.37 0.00 39.31 3.06
138 139 5.445673 CGCCCGTAAATAACAAATGTTCGTA 60.446 40.000 1.37 0.00 39.31 3.43
139 140 4.669708 CGCCCGTAAATAACAAATGTTCGT 60.670 41.667 1.37 0.00 39.31 3.85
140 141 3.781846 CGCCCGTAAATAACAAATGTTCG 59.218 43.478 1.37 0.13 39.31 3.95
141 142 4.789629 GTCGCCCGTAAATAACAAATGTTC 59.210 41.667 1.37 0.00 39.31 3.18
142 143 4.215827 TGTCGCCCGTAAATAACAAATGTT 59.784 37.500 4.01 4.01 41.73 2.71
143 144 3.752222 TGTCGCCCGTAAATAACAAATGT 59.248 39.130 0.00 0.00 0.00 2.71
144 145 4.343811 TGTCGCCCGTAAATAACAAATG 57.656 40.909 0.00 0.00 0.00 2.32
145 146 5.106078 ACAATGTCGCCCGTAAATAACAAAT 60.106 36.000 0.00 0.00 0.00 2.32
146 147 4.215827 ACAATGTCGCCCGTAAATAACAAA 59.784 37.500 0.00 0.00 0.00 2.83
147 148 3.752222 ACAATGTCGCCCGTAAATAACAA 59.248 39.130 0.00 0.00 0.00 2.83
148 149 3.336468 ACAATGTCGCCCGTAAATAACA 58.664 40.909 0.00 0.00 0.00 2.41
149 150 3.619929 AGACAATGTCGCCCGTAAATAAC 59.380 43.478 7.83 0.00 37.67 1.89
150 151 3.864243 AGACAATGTCGCCCGTAAATAA 58.136 40.909 7.83 0.00 37.67 1.40
151 152 3.530265 AGACAATGTCGCCCGTAAATA 57.470 42.857 7.83 0.00 37.67 1.40
152 153 2.396590 AGACAATGTCGCCCGTAAAT 57.603 45.000 7.83 0.00 37.67 1.40
153 154 2.231964 AGTAGACAATGTCGCCCGTAAA 59.768 45.455 7.83 0.00 37.67 2.01
154 155 1.820519 AGTAGACAATGTCGCCCGTAA 59.179 47.619 7.83 0.00 37.67 3.18
155 156 1.466856 AGTAGACAATGTCGCCCGTA 58.533 50.000 7.83 0.00 37.67 4.02
156 157 0.606604 AAGTAGACAATGTCGCCCGT 59.393 50.000 7.83 0.00 37.67 5.28
157 158 1.393539 CAAAGTAGACAATGTCGCCCG 59.606 52.381 7.83 0.00 37.67 6.13
158 159 2.423577 ACAAAGTAGACAATGTCGCCC 58.576 47.619 7.83 0.08 37.67 6.13
159 160 3.746492 AGAACAAAGTAGACAATGTCGCC 59.254 43.478 7.83 2.61 37.67 5.54
160 161 4.377431 CCAGAACAAAGTAGACAATGTCGC 60.377 45.833 7.83 5.40 37.67 5.19
161 162 4.152402 CCCAGAACAAAGTAGACAATGTCG 59.848 45.833 7.83 0.00 37.67 4.35
162 163 5.063880 ACCCAGAACAAAGTAGACAATGTC 58.936 41.667 5.02 5.02 0.00 3.06
163 164 5.048846 ACCCAGAACAAAGTAGACAATGT 57.951 39.130 0.00 0.00 0.00 2.71
164 165 7.012894 TGTTTACCCAGAACAAAGTAGACAATG 59.987 37.037 0.00 0.00 34.32 2.82
165 166 7.057894 TGTTTACCCAGAACAAAGTAGACAAT 58.942 34.615 0.00 0.00 34.32 2.71
166 167 6.416415 TGTTTACCCAGAACAAAGTAGACAA 58.584 36.000 0.00 0.00 34.32 3.18
167 168 5.991861 TGTTTACCCAGAACAAAGTAGACA 58.008 37.500 0.00 0.00 34.32 3.41
168 169 6.930667 TTGTTTACCCAGAACAAAGTAGAC 57.069 37.500 0.37 0.00 42.25 2.59
175 176 4.953579 AGCTTCTTTGTTTACCCAGAACAA 59.046 37.500 0.00 0.00 43.16 2.83
176 177 4.532834 AGCTTCTTTGTTTACCCAGAACA 58.467 39.130 0.00 0.00 35.36 3.18
177 178 5.515797 AAGCTTCTTTGTTTACCCAGAAC 57.484 39.130 0.00 0.00 0.00 3.01
178 179 8.927675 TTATAAGCTTCTTTGTTTACCCAGAA 57.072 30.769 0.00 0.00 0.00 3.02
179 180 8.789762 GTTTATAAGCTTCTTTGTTTACCCAGA 58.210 33.333 0.00 0.00 0.00 3.86
180 181 8.573035 TGTTTATAAGCTTCTTTGTTTACCCAG 58.427 33.333 0.00 0.00 0.00 4.45
181 182 8.466617 TGTTTATAAGCTTCTTTGTTTACCCA 57.533 30.769 0.00 0.00 0.00 4.51
182 183 9.752961 TTTGTTTATAAGCTTCTTTGTTTACCC 57.247 29.630 0.00 0.00 0.00 3.69
187 188 9.249457 GCTTCTTTGTTTATAAGCTTCTTTGTT 57.751 29.630 0.00 0.00 40.87 2.83
188 189 7.867909 GGCTTCTTTGTTTATAAGCTTCTTTGT 59.132 33.333 0.00 0.00 43.04 2.83
189 190 8.084684 AGGCTTCTTTGTTTATAAGCTTCTTTG 58.915 33.333 0.00 0.00 43.04 2.77
190 191 8.183104 AGGCTTCTTTGTTTATAAGCTTCTTT 57.817 30.769 0.00 0.00 43.04 2.52
191 192 7.767250 AGGCTTCTTTGTTTATAAGCTTCTT 57.233 32.000 0.00 0.00 43.04 2.52
192 193 7.384439 GAGGCTTCTTTGTTTATAAGCTTCT 57.616 36.000 0.00 0.00 43.66 2.85
193 194 7.384439 AGAGGCTTCTTTGTTTATAAGCTTC 57.616 36.000 0.00 9.26 45.92 3.86
194 195 6.375736 GGAGAGGCTTCTTTGTTTATAAGCTT 59.624 38.462 3.48 3.48 43.04 3.74
195 196 5.883115 GGAGAGGCTTCTTTGTTTATAAGCT 59.117 40.000 0.00 0.00 43.04 3.74
196 197 5.883115 AGGAGAGGCTTCTTTGTTTATAAGC 59.117 40.000 0.00 0.00 42.81 3.09
197 198 6.540551 GGAGGAGAGGCTTCTTTGTTTATAAG 59.459 42.308 0.00 0.00 32.53 1.73
198 199 6.012858 TGGAGGAGAGGCTTCTTTGTTTATAA 60.013 38.462 0.00 0.00 32.53 0.98
199 200 5.487488 TGGAGGAGAGGCTTCTTTGTTTATA 59.513 40.000 0.00 0.00 32.53 0.98
200 201 4.289672 TGGAGGAGAGGCTTCTTTGTTTAT 59.710 41.667 0.00 0.00 32.53 1.40
201 202 3.650942 TGGAGGAGAGGCTTCTTTGTTTA 59.349 43.478 0.00 0.00 32.53 2.01
202 203 2.443255 TGGAGGAGAGGCTTCTTTGTTT 59.557 45.455 0.00 0.00 32.53 2.83
203 204 2.057922 TGGAGGAGAGGCTTCTTTGTT 58.942 47.619 0.00 0.00 32.53 2.83
204 205 1.349357 GTGGAGGAGAGGCTTCTTTGT 59.651 52.381 0.00 0.00 32.53 2.83
205 206 1.349026 TGTGGAGGAGAGGCTTCTTTG 59.651 52.381 0.00 0.00 32.53 2.77
206 207 1.734655 TGTGGAGGAGAGGCTTCTTT 58.265 50.000 0.00 0.00 32.53 2.52
207 208 1.836802 GATGTGGAGGAGAGGCTTCTT 59.163 52.381 0.00 0.00 32.53 2.52
208 209 1.008206 AGATGTGGAGGAGAGGCTTCT 59.992 52.381 0.00 0.00 36.01 2.85
209 210 1.412343 GAGATGTGGAGGAGAGGCTTC 59.588 57.143 0.00 0.00 0.00 3.86
210 211 1.008206 AGAGATGTGGAGGAGAGGCTT 59.992 52.381 0.00 0.00 0.00 4.35
236 237 1.522668 TGTGAACGATCCAAAGCCAG 58.477 50.000 0.00 0.00 0.00 4.85
237 238 1.811965 CATGTGAACGATCCAAAGCCA 59.188 47.619 0.00 0.00 0.00 4.75
238 239 1.468054 GCATGTGAACGATCCAAAGCC 60.468 52.381 0.00 0.00 0.00 4.35
239 240 1.199789 TGCATGTGAACGATCCAAAGC 59.800 47.619 0.00 0.00 0.00 3.51
240 241 3.431856 CATGCATGTGAACGATCCAAAG 58.568 45.455 18.91 0.00 0.00 2.77
243 244 0.734309 GCATGCATGTGAACGATCCA 59.266 50.000 26.79 0.00 0.00 3.41
268 269 2.423577 GGTCGGCTCAGCTTTCTTTTA 58.576 47.619 0.00 0.00 0.00 1.52
272 273 2.665603 GGGTCGGCTCAGCTTTCT 59.334 61.111 0.00 0.00 0.00 2.52
273 274 2.436824 GGGGTCGGCTCAGCTTTC 60.437 66.667 0.00 0.00 0.00 2.62
283 284 1.207329 CAGTAGGAAAAGAGGGGTCGG 59.793 57.143 0.00 0.00 0.00 4.79
289 290 6.206243 CCATGCATATTCAGTAGGAAAAGAGG 59.794 42.308 0.00 0.00 39.39 3.69
291 292 5.532406 GCCATGCATATTCAGTAGGAAAAGA 59.468 40.000 0.00 0.00 39.39 2.52
404 418 7.763356 TCGACTCGAGATCTTTTTCTTCTTAT 58.237 34.615 21.68 0.00 0.00 1.73
465 479 0.315568 GATGGTTAGCTCGATCGGCT 59.684 55.000 26.60 26.60 43.02 5.52
554 573 3.561313 GGCTGGTCTTTGGTTATTCTCCA 60.561 47.826 0.00 0.00 0.00 3.86
710 748 9.360093 GTACTGTTTAGAACTAGTACTCGAGTA 57.640 37.037 21.25 21.25 39.78 2.59
757 795 9.753674 TCCTTTCTTCCATTTTCATACTACATT 57.246 29.630 0.00 0.00 0.00 2.71
758 796 9.753674 TTCCTTTCTTCCATTTTCATACTACAT 57.246 29.630 0.00 0.00 0.00 2.29
759 797 9.010029 GTTCCTTTCTTCCATTTTCATACTACA 57.990 33.333 0.00 0.00 0.00 2.74
760 798 9.010029 TGTTCCTTTCTTCCATTTTCATACTAC 57.990 33.333 0.00 0.00 0.00 2.73
761 799 9.010029 GTGTTCCTTTCTTCCATTTTCATACTA 57.990 33.333 0.00 0.00 0.00 1.82
762 800 7.308589 CGTGTTCCTTTCTTCCATTTTCATACT 60.309 37.037 0.00 0.00 0.00 2.12
763 801 6.801862 CGTGTTCCTTTCTTCCATTTTCATAC 59.198 38.462 0.00 0.00 0.00 2.39
764 802 6.712998 TCGTGTTCCTTTCTTCCATTTTCATA 59.287 34.615 0.00 0.00 0.00 2.15
765 803 5.534654 TCGTGTTCCTTTCTTCCATTTTCAT 59.465 36.000 0.00 0.00 0.00 2.57
766 804 4.884744 TCGTGTTCCTTTCTTCCATTTTCA 59.115 37.500 0.00 0.00 0.00 2.69
767 805 5.432885 TCGTGTTCCTTTCTTCCATTTTC 57.567 39.130 0.00 0.00 0.00 2.29
768 806 5.772521 CATCGTGTTCCTTTCTTCCATTTT 58.227 37.500 0.00 0.00 0.00 1.82
778 816 1.065418 CCCCTAGCATCGTGTTCCTTT 60.065 52.381 0.00 0.00 0.00 3.11
937 975 4.620086 TCTGTGGAAGGAAGGGTAGATA 57.380 45.455 0.00 0.00 0.00 1.98
946 984 1.349026 CCTCTGCTTCTGTGGAAGGAA 59.651 52.381 7.69 0.00 46.39 3.36
952 990 0.604780 CACACCCTCTGCTTCTGTGG 60.605 60.000 0.00 0.00 30.61 4.17
1122 1171 1.494721 ACTTTGAAGGTCTGCTTCCCA 59.505 47.619 0.00 0.00 0.00 4.37
1203 1252 2.829120 AGCTACCACAGAAGAGAGGAAC 59.171 50.000 0.00 0.00 0.00 3.62
1204 1253 3.176924 AGCTACCACAGAAGAGAGGAA 57.823 47.619 0.00 0.00 0.00 3.36
1206 1255 2.167487 GGAAGCTACCACAGAAGAGAGG 59.833 54.545 0.00 0.00 0.00 3.69
1207 1256 3.096092 AGGAAGCTACCACAGAAGAGAG 58.904 50.000 0.00 0.00 0.00 3.20
1208 1257 3.176924 AGGAAGCTACCACAGAAGAGA 57.823 47.619 0.00 0.00 0.00 3.10
1209 1258 3.513515 AGAAGGAAGCTACCACAGAAGAG 59.486 47.826 0.00 0.00 0.00 2.85
1212 1261 3.807209 GCAAGAAGGAAGCTACCACAGAA 60.807 47.826 0.00 0.00 0.00 3.02
1247 1304 4.885907 AGTTTATGACTCCAAGGATGCATG 59.114 41.667 2.46 0.00 31.20 4.06
1248 1305 5.121380 AGTTTATGACTCCAAGGATGCAT 57.879 39.130 0.00 0.00 31.20 3.96
1249 1306 4.574674 AGTTTATGACTCCAAGGATGCA 57.425 40.909 0.00 0.00 31.20 3.96
1274 1331 4.084328 AGAGAACTTCACAATTCTTTCGCG 60.084 41.667 0.00 0.00 35.29 5.87
1277 1334 7.970614 ACAAACAGAGAACTTCACAATTCTTTC 59.029 33.333 0.00 0.00 35.29 2.62
1290 1347 3.111853 TGCATCGACAAACAGAGAACT 57.888 42.857 0.00 0.00 0.00 3.01
1363 1453 6.426025 ACGTTTTTCTAGGTTAGTTTAGCCTG 59.574 38.462 2.20 0.00 39.89 4.85
1380 1470 7.964011 TCCGGATCAAAATGTATAACGTTTTTC 59.036 33.333 5.91 0.00 42.72 2.29
1390 1480 7.974504 AGTATTACCTCCGGATCAAAATGTAT 58.025 34.615 3.57 0.00 0.00 2.29
1402 1492 5.786264 AATCACACTAGTATTACCTCCGG 57.214 43.478 0.00 0.00 0.00 5.14
1419 1509 8.803397 ACTACCCCACTATTTCTTTAAATCAC 57.197 34.615 0.00 0.00 36.67 3.06
1425 1523 7.043565 CGCTTAACTACCCCACTATTTCTTTA 58.956 38.462 0.00 0.00 0.00 1.85
1428 1526 4.141779 CCGCTTAACTACCCCACTATTTCT 60.142 45.833 0.00 0.00 0.00 2.52
1429 1527 4.124970 CCGCTTAACTACCCCACTATTTC 58.875 47.826 0.00 0.00 0.00 2.17
1439 1537 0.036671 ACCTGTGCCGCTTAACTACC 60.037 55.000 0.00 0.00 0.00 3.18
1449 1547 2.352651 CTCAATAATCACACCTGTGCCG 59.647 50.000 0.17 0.00 45.25 5.69
1456 1554 2.357009 CTGCCTGCTCAATAATCACACC 59.643 50.000 0.00 0.00 0.00 4.16
1516 1615 1.920574 CGACAAGTCATTAGCACTCCG 59.079 52.381 0.72 0.00 0.00 4.63
1548 1647 2.104281 GGACGGTGCATCCCTAAAGTAT 59.896 50.000 0.00 0.00 0.00 2.12
1557 1656 2.550830 AATAGATGGACGGTGCATCC 57.449 50.000 30.94 17.59 44.93 3.51
1558 1657 4.601019 CAAAAATAGATGGACGGTGCATC 58.399 43.478 28.60 28.60 44.29 3.91
1605 1704 1.164411 TATGGCACCGTCAAAAGCAG 58.836 50.000 0.00 0.00 0.00 4.24
1632 1731 9.034800 AGTGCTATATTTTTCCCTCAAATTTCA 57.965 29.630 0.00 0.00 0.00 2.69
1633 1732 9.875691 AAGTGCTATATTTTTCCCTCAAATTTC 57.124 29.630 0.00 0.00 0.00 2.17
1643 1742 8.837389 CAGGTAGGTAAAGTGCTATATTTTTCC 58.163 37.037 0.00 0.00 0.00 3.13
1644 1743 8.343366 GCAGGTAGGTAAAGTGCTATATTTTTC 58.657 37.037 0.00 0.00 0.00 2.29
1674 1776 3.064207 AGCGTGCAGTAAAATCGAAGAA 58.936 40.909 0.00 0.00 43.58 2.52
1679 1781 2.916583 GCAGCGTGCAGTAAAATCG 58.083 52.632 5.30 0.00 44.26 3.34
1787 2013 6.099701 TGCAGAGAGGGTGAGCTAAATTTATA 59.900 38.462 0.00 0.00 0.00 0.98
1966 2218 3.016736 AGTGAGAACAATAAATGGGGCG 58.983 45.455 0.00 0.00 0.00 6.13
1989 2241 1.742761 GCACTGGCAGATCTAGCAAA 58.257 50.000 23.66 5.86 40.72 3.68
2011 2263 1.377536 GCTAAAAGCTCAGGCAGGAG 58.622 55.000 0.00 2.20 41.70 3.69
2012 2264 3.558674 GCTAAAAGCTCAGGCAGGA 57.441 52.632 0.00 0.00 41.70 3.86
2025 2277 6.106673 CCATTTCTTACTCTTCCGAGCTAAA 58.893 40.000 0.00 0.00 41.09 1.85
2033 3668 5.249420 ACTGAAGCCATTTCTTACTCTTCC 58.751 41.667 0.00 0.00 36.71 3.46
2385 4023 2.244000 CACGCAAAGTGTCGGGAAT 58.756 52.632 0.00 0.00 45.51 3.01
2870 4545 3.379445 GCCCCTCCGTCAGACGAA 61.379 66.667 24.88 2.22 46.05 3.85
3014 4689 1.227089 CCGAGAGATCCACGCAAGG 60.227 63.158 0.00 0.00 46.39 3.61
3241 4916 4.084013 GGATACACACCAGAGTCAAAAACG 60.084 45.833 0.00 0.00 0.00 3.60
3297 4972 4.035792 TGCAACATGTAACTTTTACAGCGT 59.964 37.500 0.00 2.55 0.00 5.07
3344 5019 8.799367 CCAAGAAATAATGCATATGGAGATTCA 58.201 33.333 0.00 0.00 0.00 2.57
3345 5020 8.248945 CCCAAGAAATAATGCATATGGAGATTC 58.751 37.037 0.00 5.58 0.00 2.52
3346 5021 7.951806 TCCCAAGAAATAATGCATATGGAGATT 59.048 33.333 0.00 3.28 0.00 2.40
3347 5022 7.472741 TCCCAAGAAATAATGCATATGGAGAT 58.527 34.615 0.00 0.00 0.00 2.75
3348 5023 6.851318 TCCCAAGAAATAATGCATATGGAGA 58.149 36.000 0.00 0.00 0.00 3.71
3349 5024 7.309621 CCTTCCCAAGAAATAATGCATATGGAG 60.310 40.741 0.00 0.00 0.00 3.86
3350 5025 6.494491 CCTTCCCAAGAAATAATGCATATGGA 59.506 38.462 0.00 1.06 0.00 3.41
3351 5026 6.268387 ACCTTCCCAAGAAATAATGCATATGG 59.732 38.462 0.00 0.50 0.00 2.74
3352 5027 7.294017 ACCTTCCCAAGAAATAATGCATATG 57.706 36.000 0.00 0.00 0.00 1.78
3353 5028 8.227507 ACTACCTTCCCAAGAAATAATGCATAT 58.772 33.333 0.00 0.00 0.00 1.78
3354 5029 7.582719 ACTACCTTCCCAAGAAATAATGCATA 58.417 34.615 0.00 0.00 0.00 3.14
3355 5030 6.435164 ACTACCTTCCCAAGAAATAATGCAT 58.565 36.000 0.00 0.00 0.00 3.96
3356 5031 5.826643 ACTACCTTCCCAAGAAATAATGCA 58.173 37.500 0.00 0.00 0.00 3.96
3357 5032 6.152831 ACAACTACCTTCCCAAGAAATAATGC 59.847 38.462 0.00 0.00 0.00 3.56
3358 5033 7.393234 TCACAACTACCTTCCCAAGAAATAATG 59.607 37.037 0.00 0.00 0.00 1.90
3359 5034 7.466804 TCACAACTACCTTCCCAAGAAATAAT 58.533 34.615 0.00 0.00 0.00 1.28
3360 5035 6.843752 TCACAACTACCTTCCCAAGAAATAA 58.156 36.000 0.00 0.00 0.00 1.40
3460 5135 4.404073 CCTAGAGTTGCTCAATACTGGAGT 59.596 45.833 0.00 0.00 34.83 3.85
3461 5136 4.646945 TCCTAGAGTTGCTCAATACTGGAG 59.353 45.833 0.00 0.00 32.06 3.86
3468 5143 5.898972 AGAGATTCTCCTAGAGTTGCTCAAT 59.101 40.000 10.09 0.00 32.06 2.57
3512 5187 8.203937 GGTTTAAACCTGTATTTGCAGTTTTT 57.796 30.769 26.98 0.00 45.75 1.94
3613 5289 3.245839 GGATTTTTGGGGGAAGGTCCTAA 60.246 47.826 0.00 0.00 36.57 2.69
3678 5354 2.093973 GCGACATGGAAGGAAGAAGAGA 60.094 50.000 0.00 0.00 0.00 3.10
3690 5366 1.557099 AGTCACTTAGGCGACATGGA 58.443 50.000 0.00 0.00 34.48 3.41
3694 5370 1.508632 GCAAAGTCACTTAGGCGACA 58.491 50.000 0.00 0.00 34.48 4.35
3713 5389 0.250234 AGTGTCCATGGTGTCGATGG 59.750 55.000 12.58 4.76 41.70 3.51
3714 5390 1.362768 CAGTGTCCATGGTGTCGATG 58.637 55.000 12.58 1.02 0.00 3.84
3715 5391 0.391661 GCAGTGTCCATGGTGTCGAT 60.392 55.000 12.58 0.00 0.00 3.59
3716 5392 1.005037 GCAGTGTCCATGGTGTCGA 60.005 57.895 12.58 0.00 0.00 4.20
3717 5393 2.034879 GGCAGTGTCCATGGTGTCG 61.035 63.158 12.58 0.00 0.00 4.35
3718 5394 0.613260 TAGGCAGTGTCCATGGTGTC 59.387 55.000 12.58 3.86 0.00 3.67
3720 5396 0.392998 GGTAGGCAGTGTCCATGGTG 60.393 60.000 12.58 3.41 0.00 4.17
3721 5397 0.840288 TGGTAGGCAGTGTCCATGGT 60.840 55.000 12.58 0.00 0.00 3.55
3742 5419 2.359404 GAGGGGAGAGGACACGGA 59.641 66.667 0.00 0.00 0.00 4.69
3749 5426 2.837291 CGCAGAGGAGGGGAGAGG 60.837 72.222 0.00 0.00 0.00 3.69
3809 5486 0.592500 ATGCTGATAGTGCGACGACG 60.593 55.000 2.12 2.12 42.93 5.12
3853 5530 1.690633 GAGGGGGAGATGGTGCTGA 60.691 63.158 0.00 0.00 0.00 4.26
3942 5625 0.172127 CGATCGGAGGATGCATCGAT 59.828 55.000 20.15 18.87 43.75 3.59
3956 5639 2.099062 GCACTTTGGCTGCGATCG 59.901 61.111 11.69 11.69 0.00 3.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.