Multiple sequence alignment - TraesCS5D01G468200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G468200 chr5D 100.000 5568 0 0 1 5568 509652966 509647399 0.000000e+00 10283.0
1 TraesCS5D01G468200 chr5D 84.790 1190 149 20 1290 2470 520580605 520579439 0.000000e+00 1166.0
2 TraesCS5D01G468200 chr5D 86.401 978 115 16 2491 3464 520579391 520578428 0.000000e+00 1053.0
3 TraesCS5D01G468200 chr5D 83.416 1007 124 22 4001 4996 520578430 520577456 0.000000e+00 894.0
4 TraesCS5D01G468200 chr5D 85.766 548 61 6 5025 5568 520577459 520576925 1.050000e-156 564.0
5 TraesCS5D01G468200 chr5D 89.030 237 24 2 1 237 51676087 51675853 5.460000e-75 292.0
6 TraesCS5D01G468200 chr5D 89.121 239 21 4 1 237 346885576 346885341 5.460000e-75 292.0
7 TraesCS5D01G468200 chr5D 88.430 242 23 2 3766 4002 503323025 503322784 2.540000e-73 287.0
8 TraesCS5D01G468200 chr5D 87.137 241 28 3 1 240 397013626 397013864 2.560000e-68 270.0
9 TraesCS5D01G468200 chr5D 80.682 352 58 9 1337 1683 520421893 520421547 1.190000e-66 265.0
10 TraesCS5D01G468200 chr5B 95.326 2118 93 6 1296 3410 640491806 640489692 0.000000e+00 3358.0
11 TraesCS5D01G468200 chr5B 82.709 2215 286 52 1290 3464 655901242 655899085 0.000000e+00 1879.0
12 TraesCS5D01G468200 chr5B 94.059 1010 49 5 3566 4571 640489693 640488691 0.000000e+00 1522.0
13 TraesCS5D01G468200 chr5B 92.392 999 54 14 4574 5568 640476716 640475736 0.000000e+00 1404.0
14 TraesCS5D01G468200 chr5B 93.821 615 23 7 684 1285 640492474 640491862 0.000000e+00 911.0
15 TraesCS5D01G468200 chr5B 82.260 1009 132 22 4001 4996 655899087 655898113 0.000000e+00 828.0
16 TraesCS5D01G468200 chr5B 87.764 237 29 0 1 237 507805960 507805724 1.530000e-70 278.0
17 TraesCS5D01G468200 chr1D 84.052 1693 220 37 1809 3482 440581280 440582941 0.000000e+00 1585.0
18 TraesCS5D01G468200 chr1D 81.239 1759 255 54 1815 3550 440570731 440572437 0.000000e+00 1351.0
19 TraesCS5D01G468200 chr1D 81.789 1565 234 36 2004 3550 440575806 440577337 0.000000e+00 1264.0
20 TraesCS5D01G468200 chr1D 81.818 1188 178 32 1805 2978 440565862 440567025 0.000000e+00 963.0
21 TraesCS5D01G468200 chr1A 83.856 1691 219 40 1815 3482 537441469 537439810 0.000000e+00 1561.0
22 TraesCS5D01G468200 chr1A 82.896 1754 252 35 1815 3549 537367910 537366186 0.000000e+00 1533.0
23 TraesCS5D01G468200 chr1A 89.583 240 21 4 1 237 36564308 36564070 9.070000e-78 302.0
24 TraesCS5D01G468200 chr1A 88.608 237 22 2 3771 4002 554491570 554491334 3.280000e-72 283.0
25 TraesCS5D01G468200 chr1B 80.806 1761 270 55 1815 3550 597961061 597962778 0.000000e+00 1317.0
26 TraesCS5D01G468200 chr1B 80.780 1717 266 48 1815 3508 597982818 597984493 0.000000e+00 1284.0
27 TraesCS5D01G468200 chr1B 80.363 1762 284 43 1812 3550 597953489 597955211 0.000000e+00 1280.0
28 TraesCS5D01G468200 chr1B 80.159 1759 289 41 1817 3551 598074885 598076607 0.000000e+00 1260.0
29 TraesCS5D01G468200 chr1B 82.122 688 96 19 1820 2496 598080431 598081102 1.050000e-156 564.0
30 TraesCS5D01G468200 chr1B 88.235 238 27 1 1 237 56998220 56997983 3.280000e-72 283.0
31 TraesCS5D01G468200 chr5A 85.787 978 126 12 2491 3464 648769816 648768848 0.000000e+00 1024.0
32 TraesCS5D01G468200 chr5A 81.646 632 76 24 4001 4622 648768850 648768249 6.480000e-134 488.0
33 TraesCS5D01G468200 chr5A 82.584 356 47 5 4628 4982 648746530 648746189 3.260000e-77 300.0
34 TraesCS5D01G468200 chr5A 89.121 239 17 7 1 237 533345570 533345801 7.060000e-74 289.0
35 TraesCS5D01G468200 chrUn 88.400 250 24 2 3758 4002 359776143 359775894 4.220000e-76 296.0
36 TraesCS5D01G468200 chrUn 88.430 242 23 2 3766 4002 465870082 465870323 2.540000e-73 287.0
37 TraesCS5D01G468200 chrUn 88.017 242 24 2 3766 4002 298934395 298934636 1.180000e-71 281.0
38 TraesCS5D01G468200 chr7B 88.142 253 25 2 3755 4002 662745498 662745750 4.220000e-76 296.0
39 TraesCS5D01G468200 chr7B 91.489 47 0 4 580 624 215926287 215926331 1.670000e-05 62.1
40 TraesCS5D01G468200 chr7B 100.000 28 0 0 825 852 144082131 144082104 1.000000e-02 52.8
41 TraesCS5D01G468200 chr3B 88.608 237 26 1 1 236 562781078 562780842 2.540000e-73 287.0
42 TraesCS5D01G468200 chr3B 88.017 242 24 2 3766 4002 201481979 201481738 1.180000e-71 281.0
43 TraesCS5D01G468200 chr2B 88.430 242 23 2 3766 4002 683737962 683737721 2.540000e-73 287.0
44 TraesCS5D01G468200 chr2D 88.235 238 26 2 1 237 24221094 24221330 3.280000e-72 283.0
45 TraesCS5D01G468200 chr7A 83.766 154 14 1 1130 1283 28209387 28209245 9.730000e-28 135.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G468200 chr5D 509647399 509652966 5567 True 10283.000000 10283 100.00000 1 5568 1 chr5D.!!$R4 5567
1 TraesCS5D01G468200 chr5D 520576925 520580605 3680 True 919.250000 1166 85.09325 1290 5568 4 chr5D.!!$R6 4278
2 TraesCS5D01G468200 chr5B 640488691 640492474 3783 True 1930.333333 3358 94.40200 684 4571 3 chr5B.!!$R3 3887
3 TraesCS5D01G468200 chr5B 640475736 640476716 980 True 1404.000000 1404 92.39200 4574 5568 1 chr5B.!!$R2 994
4 TraesCS5D01G468200 chr5B 655898113 655901242 3129 True 1353.500000 1879 82.48450 1290 4996 2 chr5B.!!$R4 3706
5 TraesCS5D01G468200 chr1D 440565862 440582941 17079 False 1290.750000 1585 82.22450 1805 3550 4 chr1D.!!$F1 1745
6 TraesCS5D01G468200 chr1A 537439810 537441469 1659 True 1561.000000 1561 83.85600 1815 3482 1 chr1A.!!$R3 1667
7 TraesCS5D01G468200 chr1A 537366186 537367910 1724 True 1533.000000 1533 82.89600 1815 3549 1 chr1A.!!$R2 1734
8 TraesCS5D01G468200 chr1B 597961061 597962778 1717 False 1317.000000 1317 80.80600 1815 3550 1 chr1B.!!$F2 1735
9 TraesCS5D01G468200 chr1B 597982818 597984493 1675 False 1284.000000 1284 80.78000 1815 3508 1 chr1B.!!$F3 1693
10 TraesCS5D01G468200 chr1B 597953489 597955211 1722 False 1280.000000 1280 80.36300 1812 3550 1 chr1B.!!$F1 1738
11 TraesCS5D01G468200 chr1B 598074885 598081102 6217 False 912.000000 1260 81.14050 1817 3551 2 chr1B.!!$F4 1734
12 TraesCS5D01G468200 chr5A 648768249 648769816 1567 True 756.000000 1024 83.71650 2491 4622 2 chr5A.!!$R2 2131

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
132 133 0.033504 GGAGTTCACGCACAGGAGAA 59.966 55.000 0.0 0.0 0.00 2.87 F
234 235 0.254747 CCGGGCTCTGGGTTGAATTA 59.745 55.000 0.0 0.0 0.00 1.40 F
513 514 0.323542 AGGTAGGTCGGTCACTCCAG 60.324 60.000 0.0 0.0 35.57 3.86 F
515 516 0.966370 GTAGGTCGGTCACTCCAGCT 60.966 60.000 0.0 0.0 35.57 4.24 F
1552 1611 1.017387 GTGCTTCTAAAGGGCGATGG 58.983 55.000 0.0 0.0 0.00 3.51 F
1560 1619 1.779061 AAAGGGCGATGGTGTCCTGT 61.779 55.000 0.0 0.0 0.00 4.00 F
2752 16441 2.092838 GCTCGTGTTCTTGAAATCCTCG 59.907 50.000 0.0 0.0 0.00 4.63 F
4032 20539 1.212688 TCACACCATCATCCCCACATC 59.787 52.381 0.0 0.0 0.00 3.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1538 1597 0.539986 GGACACCATCGCCCTTTAGA 59.460 55.000 0.00 0.00 0.00 2.10 R
1552 1611 1.016130 CGCCATCTGACACAGGACAC 61.016 60.000 0.00 0.00 31.51 3.67 R
1560 1619 1.078918 CTGCCTTCGCCATCTGACA 60.079 57.895 0.00 0.00 0.00 3.58 R
1951 15568 3.053320 AGGCCAAGCTAGCTTAAAGGAAT 60.053 43.478 28.87 14.82 34.50 3.01 R
3400 17109 3.665323 GCACAACAAGAGCAACTATCACG 60.665 47.826 0.00 0.00 33.66 4.35 R
3513 17222 5.067954 TCCTGGTGAATGAATCATAGCATG 58.932 41.667 0.00 0.00 40.97 4.06 R
4346 21036 1.100510 TACTAGTCGCGGCACTCATT 58.899 50.000 15.58 0.00 0.00 2.57 R
4998 21742 0.673985 GGCCTAAATTGGATTCGGGC 59.326 55.000 0.00 0.00 38.34 6.13 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 7.629027 GACAAATTTTGGATGTCTGAGAAAC 57.371 36.000 13.42 0.00 40.18 2.78
29 30 7.352079 ACAAATTTTGGATGTCTGAGAAACT 57.648 32.000 13.42 0.00 34.12 2.66
30 31 7.785033 ACAAATTTTGGATGTCTGAGAAACTT 58.215 30.769 13.42 0.00 34.12 2.66
31 32 8.260114 ACAAATTTTGGATGTCTGAGAAACTTT 58.740 29.630 13.42 0.00 34.12 2.66
32 33 9.101655 CAAATTTTGGATGTCTGAGAAACTTTT 57.898 29.630 0.97 0.00 0.00 2.27
33 34 8.652810 AATTTTGGATGTCTGAGAAACTTTTG 57.347 30.769 0.00 0.00 0.00 2.44
36 37 7.403312 TTGGATGTCTGAGAAACTTTTGAAA 57.597 32.000 0.00 0.00 0.00 2.69
37 38 7.403312 TGGATGTCTGAGAAACTTTTGAAAA 57.597 32.000 0.00 0.00 0.00 2.29
38 39 8.010733 TGGATGTCTGAGAAACTTTTGAAAAT 57.989 30.769 0.00 0.00 0.00 1.82
39 40 8.137437 TGGATGTCTGAGAAACTTTTGAAAATC 58.863 33.333 0.00 0.00 0.00 2.17
40 41 7.324616 GGATGTCTGAGAAACTTTTGAAAATCG 59.675 37.037 0.00 0.00 0.00 3.34
41 42 5.971202 TGTCTGAGAAACTTTTGAAAATCGC 59.029 36.000 0.00 0.00 0.00 4.58
42 43 5.971202 GTCTGAGAAACTTTTGAAAATCGCA 59.029 36.000 0.00 0.00 0.00 5.10
43 44 5.971202 TCTGAGAAACTTTTGAAAATCGCAC 59.029 36.000 0.00 0.00 0.00 5.34
44 45 5.890334 TGAGAAACTTTTGAAAATCGCACT 58.110 33.333 0.00 0.00 0.00 4.40
45 46 5.743398 TGAGAAACTTTTGAAAATCGCACTG 59.257 36.000 0.00 0.00 0.00 3.66
46 47 5.650543 AGAAACTTTTGAAAATCGCACTGT 58.349 33.333 0.00 0.00 0.00 3.55
47 48 6.099341 AGAAACTTTTGAAAATCGCACTGTT 58.901 32.000 0.00 0.00 0.00 3.16
49 50 4.992688 ACTTTTGAAAATCGCACTGTTCA 58.007 34.783 0.00 0.00 0.00 3.18
51 52 2.661504 TGAAAATCGCACTGTTCACG 57.338 45.000 0.00 0.00 0.00 4.35
52 53 1.318251 GAAAATCGCACTGTTCACGC 58.682 50.000 0.00 0.00 0.00 5.34
53 54 0.040425 AAAATCGCACTGTTCACGCC 60.040 50.000 0.00 0.00 0.00 5.68
55 56 1.568612 AATCGCACTGTTCACGCCTG 61.569 55.000 0.00 0.00 0.00 4.85
56 57 2.434658 ATCGCACTGTTCACGCCTGA 62.435 55.000 0.00 0.00 0.00 3.86
57 58 2.029288 CGCACTGTTCACGCCTGAT 61.029 57.895 0.00 0.00 0.00 2.90
60 61 1.001378 GCACTGTTCACGCCTGATTTT 60.001 47.619 0.00 0.00 0.00 1.82
62 63 3.119849 GCACTGTTCACGCCTGATTTTAT 60.120 43.478 0.00 0.00 0.00 1.40
63 64 4.651994 CACTGTTCACGCCTGATTTTATC 58.348 43.478 0.00 0.00 0.00 1.75
66 67 5.473504 ACTGTTCACGCCTGATTTTATCTTT 59.526 36.000 0.00 0.00 0.00 2.52
67 68 6.016276 ACTGTTCACGCCTGATTTTATCTTTT 60.016 34.615 0.00 0.00 0.00 2.27
85 86 3.401033 TTTTTGTCATGAGCTCCTCGA 57.599 42.857 12.15 1.70 32.35 4.04
86 87 3.401033 TTTTGTCATGAGCTCCTCGAA 57.599 42.857 12.15 2.55 32.35 3.71
88 89 2.591571 TGTCATGAGCTCCTCGAATG 57.408 50.000 12.15 7.95 32.35 2.67
89 90 1.827344 TGTCATGAGCTCCTCGAATGT 59.173 47.619 12.15 0.00 32.35 2.71
90 91 2.159184 TGTCATGAGCTCCTCGAATGTC 60.159 50.000 12.15 6.30 32.35 3.06
91 92 1.410517 TCATGAGCTCCTCGAATGTCC 59.589 52.381 12.15 0.00 32.35 4.02
92 93 1.137675 CATGAGCTCCTCGAATGTCCA 59.862 52.381 12.15 0.00 32.35 4.02
93 94 1.266178 TGAGCTCCTCGAATGTCCAA 58.734 50.000 12.15 0.00 32.35 3.53
95 96 2.003301 GAGCTCCTCGAATGTCCAAAC 58.997 52.381 0.87 0.00 0.00 2.93
96 97 1.625818 AGCTCCTCGAATGTCCAAACT 59.374 47.619 0.00 0.00 0.00 2.66
98 99 2.416893 GCTCCTCGAATGTCCAAACTTC 59.583 50.000 0.00 0.00 0.00 3.01
99 100 3.664107 CTCCTCGAATGTCCAAACTTCA 58.336 45.455 0.00 0.00 0.00 3.02
100 101 3.399330 TCCTCGAATGTCCAAACTTCAC 58.601 45.455 0.00 0.00 0.00 3.18
102 103 3.563808 CCTCGAATGTCCAAACTTCACAA 59.436 43.478 0.00 0.00 0.00 3.33
104 105 5.449862 CCTCGAATGTCCAAACTTCACAAAA 60.450 40.000 0.00 0.00 0.00 2.44
105 106 6.142818 TCGAATGTCCAAACTTCACAAAAT 57.857 33.333 0.00 0.00 0.00 1.82
108 109 7.547370 TCGAATGTCCAAACTTCACAAAATTTT 59.453 29.630 0.00 0.00 0.00 1.82
109 110 7.635587 CGAATGTCCAAACTTCACAAAATTTTG 59.364 33.333 25.73 25.73 43.62 2.44
110 111 6.175712 TGTCCAAACTTCACAAAATTTTGC 57.824 33.333 26.94 9.60 41.79 3.68
112 113 6.020984 GTCCAAACTTCACAAAATTTTGCAC 58.979 36.000 26.94 7.72 41.79 4.57
113 114 5.020758 CCAAACTTCACAAAATTTTGCACG 58.979 37.500 26.94 17.10 41.79 5.34
115 116 4.116747 ACTTCACAAAATTTTGCACGGA 57.883 36.364 26.94 17.42 41.79 4.69
116 117 4.111916 ACTTCACAAAATTTTGCACGGAG 58.888 39.130 26.94 21.09 41.79 4.63
118 119 4.116747 TCACAAAATTTTGCACGGAGTT 57.883 36.364 26.94 5.80 38.88 3.01
119 120 4.109050 TCACAAAATTTTGCACGGAGTTC 58.891 39.130 26.94 0.00 38.88 3.01
120 121 3.862267 CACAAAATTTTGCACGGAGTTCA 59.138 39.130 26.94 0.00 38.88 3.18
121 122 3.862845 ACAAAATTTTGCACGGAGTTCAC 59.137 39.130 26.94 0.00 38.88 3.18
122 123 2.399396 AATTTTGCACGGAGTTCACG 57.601 45.000 0.00 0.00 41.61 4.35
123 124 0.040425 ATTTTGCACGGAGTTCACGC 60.040 50.000 0.00 0.00 41.61 5.34
124 125 1.369839 TTTTGCACGGAGTTCACGCA 61.370 50.000 0.00 0.00 41.61 5.24
125 126 2.042520 TTTGCACGGAGTTCACGCAC 62.043 55.000 0.00 0.00 41.61 5.34
127 128 2.943345 GCACGGAGTTCACGCACAG 61.943 63.158 0.00 0.00 41.61 3.66
128 129 2.029073 ACGGAGTTCACGCACAGG 59.971 61.111 0.00 0.00 37.78 4.00
129 130 2.338620 CGGAGTTCACGCACAGGA 59.661 61.111 0.00 0.00 0.00 3.86
130 131 1.734477 CGGAGTTCACGCACAGGAG 60.734 63.158 0.00 0.00 0.00 3.69
132 133 0.033504 GGAGTTCACGCACAGGAGAA 59.966 55.000 0.00 0.00 0.00 2.87
133 134 1.338200 GGAGTTCACGCACAGGAGAAT 60.338 52.381 0.00 0.00 0.00 2.40
134 135 1.996191 GAGTTCACGCACAGGAGAATC 59.004 52.381 0.00 0.00 0.00 2.52
135 136 1.620819 AGTTCACGCACAGGAGAATCT 59.379 47.619 0.00 0.00 33.73 2.40
136 137 2.037772 AGTTCACGCACAGGAGAATCTT 59.962 45.455 0.00 0.00 33.73 2.40
147 148 5.947228 CAGGAGAATCTTGCACTACAAAA 57.053 39.130 0.00 0.00 34.66 2.44
148 149 6.317789 CAGGAGAATCTTGCACTACAAAAA 57.682 37.500 0.00 0.00 34.66 1.94
194 195 8.859517 TTTTTCCTTTTTAAATCGTGGTACTG 57.140 30.769 0.00 0.00 0.00 2.74
195 196 7.571080 TTTCCTTTTTAAATCGTGGTACTGT 57.429 32.000 0.00 0.00 0.00 3.55
197 198 7.193377 TCCTTTTTAAATCGTGGTACTGTTC 57.807 36.000 0.00 0.00 0.00 3.18
198 199 6.766944 TCCTTTTTAAATCGTGGTACTGTTCA 59.233 34.615 0.00 0.00 0.00 3.18
199 200 6.854381 CCTTTTTAAATCGTGGTACTGTTCAC 59.146 38.462 0.00 0.00 0.00 3.18
200 201 5.927954 TTTAAATCGTGGTACTGTTCACC 57.072 39.130 0.00 1.47 36.54 4.02
201 202 3.478857 AAATCGTGGTACTGTTCACCA 57.521 42.857 0.00 0.00 43.82 4.17
202 203 2.743636 ATCGTGGTACTGTTCACCAG 57.256 50.000 2.70 0.00 46.56 4.00
204 205 0.949105 CGTGGTACTGTTCACCAGGC 60.949 60.000 8.90 0.00 46.56 4.85
205 206 0.396811 GTGGTACTGTTCACCAGGCT 59.603 55.000 2.70 0.00 46.56 4.58
206 207 0.685097 TGGTACTGTTCACCAGGCTC 59.315 55.000 0.00 0.00 46.06 4.70
207 208 0.685097 GGTACTGTTCACCAGGCTCA 59.315 55.000 0.00 0.00 46.06 4.26
208 209 1.279271 GGTACTGTTCACCAGGCTCAT 59.721 52.381 0.00 0.00 46.06 2.90
209 210 2.622436 GTACTGTTCACCAGGCTCATC 58.378 52.381 0.00 0.00 46.06 2.92
210 211 0.326264 ACTGTTCACCAGGCTCATCC 59.674 55.000 0.00 0.00 46.06 3.51
211 212 0.742281 CTGTTCACCAGGCTCATCCG 60.742 60.000 0.00 0.00 40.77 4.18
213 214 0.460987 GTTCACCAGGCTCATCCGAG 60.461 60.000 0.00 0.00 42.66 4.63
231 232 3.646715 CCCGGGCTCTGGGTTGAA 61.647 66.667 8.08 0.00 42.07 2.69
234 235 0.254747 CCGGGCTCTGGGTTGAATTA 59.745 55.000 0.00 0.00 0.00 1.40
236 237 2.222027 CGGGCTCTGGGTTGAATTATC 58.778 52.381 0.00 0.00 0.00 1.75
237 238 2.421388 CGGGCTCTGGGTTGAATTATCA 60.421 50.000 0.00 0.00 0.00 2.15
238 239 3.217626 GGGCTCTGGGTTGAATTATCAG 58.782 50.000 0.00 0.00 36.78 2.90
239 240 3.372025 GGGCTCTGGGTTGAATTATCAGT 60.372 47.826 0.00 0.00 36.78 3.41
240 241 4.141482 GGGCTCTGGGTTGAATTATCAGTA 60.141 45.833 0.00 0.00 36.78 2.74
241 242 5.059833 GGCTCTGGGTTGAATTATCAGTAG 58.940 45.833 0.00 0.00 36.78 2.57
242 243 4.513318 GCTCTGGGTTGAATTATCAGTAGC 59.487 45.833 0.00 0.00 36.78 3.58
243 244 5.686124 GCTCTGGGTTGAATTATCAGTAGCT 60.686 44.000 0.00 0.00 36.78 3.32
245 246 7.055667 TCTGGGTTGAATTATCAGTAGCTAG 57.944 40.000 0.00 0.00 36.78 3.42
246 247 6.042093 TCTGGGTTGAATTATCAGTAGCTAGG 59.958 42.308 0.00 0.00 36.78 3.02
247 248 5.665812 TGGGTTGAATTATCAGTAGCTAGGT 59.334 40.000 0.00 0.00 36.78 3.08
248 249 6.183360 TGGGTTGAATTATCAGTAGCTAGGTC 60.183 42.308 0.00 0.00 36.78 3.85
249 250 6.224584 GGTTGAATTATCAGTAGCTAGGTCC 58.775 44.000 0.00 0.00 36.78 4.46
251 252 5.464069 TGAATTATCAGTAGCTAGGTCCCA 58.536 41.667 0.00 0.00 0.00 4.37
252 253 5.903010 TGAATTATCAGTAGCTAGGTCCCAA 59.097 40.000 0.00 0.00 0.00 4.12
253 254 5.810080 ATTATCAGTAGCTAGGTCCCAAC 57.190 43.478 0.00 0.00 0.00 3.77
254 255 2.615986 TCAGTAGCTAGGTCCCAACA 57.384 50.000 0.00 0.00 0.00 3.33
255 256 3.116096 TCAGTAGCTAGGTCCCAACAT 57.884 47.619 0.00 0.00 0.00 2.71
257 258 4.616553 TCAGTAGCTAGGTCCCAACATTA 58.383 43.478 0.00 0.00 0.00 1.90
258 259 5.027460 TCAGTAGCTAGGTCCCAACATTAA 58.973 41.667 0.00 0.00 0.00 1.40
259 260 5.665812 TCAGTAGCTAGGTCCCAACATTAAT 59.334 40.000 0.00 0.00 0.00 1.40
260 261 6.157994 TCAGTAGCTAGGTCCCAACATTAATT 59.842 38.462 0.00 0.00 0.00 1.40
261 262 7.346175 TCAGTAGCTAGGTCCCAACATTAATTA 59.654 37.037 0.00 0.00 0.00 1.40
263 264 8.724310 AGTAGCTAGGTCCCAACATTAATTATT 58.276 33.333 0.00 0.00 0.00 1.40
266 267 9.574516 AGCTAGGTCCCAACATTAATTATTAAG 57.425 33.333 3.73 0.00 0.00 1.85
270 271 9.421399 AGGTCCCAACATTAATTATTAAGAAGG 57.579 33.333 3.73 3.34 0.00 3.46
271 272 9.416284 GGTCCCAACATTAATTATTAAGAAGGA 57.584 33.333 3.73 3.09 0.00 3.36
311 312 8.487313 ACTTCAAAAAGAACAAACATTTACCC 57.513 30.769 0.00 0.00 36.30 3.69
312 313 7.551262 ACTTCAAAAAGAACAAACATTTACCCC 59.449 33.333 0.00 0.00 36.30 4.95
314 315 6.819146 TCAAAAAGAACAAACATTTACCCCAC 59.181 34.615 0.00 0.00 0.00 4.61
315 316 5.941555 AAAGAACAAACATTTACCCCACA 57.058 34.783 0.00 0.00 0.00 4.17
317 318 5.941555 AGAACAAACATTTACCCCACAAA 57.058 34.783 0.00 0.00 0.00 2.83
318 319 6.301169 AGAACAAACATTTACCCCACAAAA 57.699 33.333 0.00 0.00 0.00 2.44
319 320 6.712276 AGAACAAACATTTACCCCACAAAAA 58.288 32.000 0.00 0.00 0.00 1.94
360 361 9.643693 ATCTAAAATGCAAAAGGATTGTAGTTG 57.356 29.630 0.00 0.00 0.00 3.16
361 362 8.855110 TCTAAAATGCAAAAGGATTGTAGTTGA 58.145 29.630 0.00 0.00 0.00 3.18
362 363 9.474920 CTAAAATGCAAAAGGATTGTAGTTGAA 57.525 29.630 0.00 0.00 0.00 2.69
363 364 7.951530 AAATGCAAAAGGATTGTAGTTGAAG 57.048 32.000 0.00 0.00 0.00 3.02
364 365 6.899393 ATGCAAAAGGATTGTAGTTGAAGA 57.101 33.333 0.00 0.00 0.00 2.87
365 366 6.707440 TGCAAAAGGATTGTAGTTGAAGAA 57.293 33.333 0.00 0.00 0.00 2.52
367 368 7.725251 TGCAAAAGGATTGTAGTTGAAGAAAT 58.275 30.769 0.00 0.00 0.00 2.17
368 369 8.855110 TGCAAAAGGATTGTAGTTGAAGAAATA 58.145 29.630 0.00 0.00 0.00 1.40
369 370 9.860898 GCAAAAGGATTGTAGTTGAAGAAATAT 57.139 29.630 0.00 0.00 0.00 1.28
406 407 9.674824 CAATGAGAAATATCAAATCTAACTGGC 57.325 33.333 0.00 0.00 31.76 4.85
407 408 7.807977 TGAGAAATATCAAATCTAACTGGCC 57.192 36.000 0.00 0.00 0.00 5.36
408 409 7.577303 TGAGAAATATCAAATCTAACTGGCCT 58.423 34.615 3.32 0.00 0.00 5.19
409 410 8.055181 TGAGAAATATCAAATCTAACTGGCCTT 58.945 33.333 3.32 0.00 0.00 4.35
410 411 8.829373 AGAAATATCAAATCTAACTGGCCTTT 57.171 30.769 3.32 0.00 0.00 3.11
411 412 9.259832 AGAAATATCAAATCTAACTGGCCTTTT 57.740 29.630 3.32 0.00 0.00 2.27
414 415 5.897377 TCAAATCTAACTGGCCTTTTAGC 57.103 39.130 15.52 0.00 0.00 3.09
415 416 5.570320 TCAAATCTAACTGGCCTTTTAGCT 58.430 37.500 15.52 6.73 0.00 3.32
416 417 6.010219 TCAAATCTAACTGGCCTTTTAGCTT 58.990 36.000 15.52 11.22 0.00 3.74
417 418 6.151144 TCAAATCTAACTGGCCTTTTAGCTTC 59.849 38.462 15.52 0.00 0.00 3.86
419 420 4.833390 TCTAACTGGCCTTTTAGCTTCTC 58.167 43.478 15.52 0.00 0.00 2.87
421 422 3.728385 ACTGGCCTTTTAGCTTCTCAT 57.272 42.857 3.32 0.00 0.00 2.90
423 424 4.775236 ACTGGCCTTTTAGCTTCTCATAG 58.225 43.478 3.32 0.00 0.00 2.23
424 425 4.226168 ACTGGCCTTTTAGCTTCTCATAGT 59.774 41.667 3.32 0.00 0.00 2.12
425 426 4.517285 TGGCCTTTTAGCTTCTCATAGTG 58.483 43.478 3.32 0.00 0.00 2.74
426 427 4.225042 TGGCCTTTTAGCTTCTCATAGTGA 59.775 41.667 3.32 0.00 0.00 3.41
427 428 5.104360 TGGCCTTTTAGCTTCTCATAGTGAT 60.104 40.000 3.32 0.00 0.00 3.06
428 429 5.825151 GGCCTTTTAGCTTCTCATAGTGATT 59.175 40.000 0.00 0.00 0.00 2.57
429 430 6.992715 GGCCTTTTAGCTTCTCATAGTGATTA 59.007 38.462 0.00 0.00 0.00 1.75
431 432 9.061435 GCCTTTTAGCTTCTCATAGTGATTATT 57.939 33.333 0.00 0.00 0.00 1.40
435 436 8.818141 TTAGCTTCTCATAGTGATTATTTCCG 57.182 34.615 0.00 0.00 0.00 4.30
436 437 6.821388 AGCTTCTCATAGTGATTATTTCCGT 58.179 36.000 0.00 0.00 0.00 4.69
437 438 7.275920 AGCTTCTCATAGTGATTATTTCCGTT 58.724 34.615 0.00 0.00 0.00 4.44
438 439 8.421784 AGCTTCTCATAGTGATTATTTCCGTTA 58.578 33.333 0.00 0.00 0.00 3.18
439 440 8.704234 GCTTCTCATAGTGATTATTTCCGTTAG 58.296 37.037 0.00 0.00 0.00 2.34
441 442 9.967346 TTCTCATAGTGATTATTTCCGTTAGAG 57.033 33.333 0.00 0.00 0.00 2.43
442 443 9.350951 TCTCATAGTGATTATTTCCGTTAGAGA 57.649 33.333 0.00 0.00 0.00 3.10
443 444 9.619316 CTCATAGTGATTATTTCCGTTAGAGAG 57.381 37.037 0.00 0.00 0.00 3.20
446 447 6.821388 AGTGATTATTTCCGTTAGAGAGCAT 58.179 36.000 0.00 0.00 0.00 3.79
447 448 7.275920 AGTGATTATTTCCGTTAGAGAGCATT 58.724 34.615 0.00 0.00 0.00 3.56
448 449 7.225538 AGTGATTATTTCCGTTAGAGAGCATTG 59.774 37.037 0.00 0.00 0.00 2.82
449 450 5.734855 TTATTTCCGTTAGAGAGCATTGC 57.265 39.130 0.00 0.00 0.00 3.56
451 452 2.760634 TCCGTTAGAGAGCATTGCAA 57.239 45.000 11.91 0.00 0.00 4.08
452 453 2.621338 TCCGTTAGAGAGCATTGCAAG 58.379 47.619 11.91 0.00 0.00 4.01
453 454 1.667724 CCGTTAGAGAGCATTGCAAGG 59.332 52.381 11.91 6.76 0.00 3.61
454 455 2.350522 CGTTAGAGAGCATTGCAAGGT 58.649 47.619 13.30 6.63 0.00 3.50
455 456 2.349886 CGTTAGAGAGCATTGCAAGGTC 59.650 50.000 13.30 14.78 0.00 3.85
456 457 3.338249 GTTAGAGAGCATTGCAAGGTCA 58.662 45.455 21.71 6.66 36.03 4.02
457 458 2.574006 AGAGAGCATTGCAAGGTCAA 57.426 45.000 21.71 0.00 36.03 3.18
458 459 2.157738 AGAGAGCATTGCAAGGTCAAC 58.842 47.619 21.71 16.69 36.03 3.18
459 460 1.200948 GAGAGCATTGCAAGGTCAACC 59.799 52.381 21.71 11.75 36.03 3.77
472 473 4.983671 AGGTCAACCTTGTCAAGTTTTC 57.016 40.909 11.61 0.14 46.09 2.29
473 474 4.600062 AGGTCAACCTTGTCAAGTTTTCT 58.400 39.130 11.61 0.00 46.09 2.52
474 475 4.640647 AGGTCAACCTTGTCAAGTTTTCTC 59.359 41.667 11.61 0.00 46.09 2.87
475 476 4.495844 GGTCAACCTTGTCAAGTTTTCTCG 60.496 45.833 11.61 0.00 0.00 4.04
476 477 3.064820 TCAACCTTGTCAAGTTTTCTCGC 59.935 43.478 11.61 0.00 0.00 5.03
477 478 1.597663 ACCTTGTCAAGTTTTCTCGCG 59.402 47.619 11.61 0.00 0.00 5.87
478 479 1.660333 CCTTGTCAAGTTTTCTCGCGC 60.660 52.381 11.61 0.00 0.00 6.86
479 480 1.003972 CTTGTCAAGTTTTCTCGCGCA 60.004 47.619 8.75 0.00 0.00 6.09
480 481 0.581529 TGTCAAGTTTTCTCGCGCAG 59.418 50.000 8.75 4.17 0.00 5.18
484 485 1.003972 CAAGTTTTCTCGCGCAGTTCA 60.004 47.619 8.75 0.00 0.00 3.18
486 487 1.461127 AGTTTTCTCGCGCAGTTCATC 59.539 47.619 8.75 0.00 0.00 2.92
487 488 1.461127 GTTTTCTCGCGCAGTTCATCT 59.539 47.619 8.75 0.00 0.00 2.90
496 497 3.369381 CAGTTCATCTGCCCGTAGG 57.631 57.895 0.00 0.00 40.90 3.18
498 499 1.754803 CAGTTCATCTGCCCGTAGGTA 59.245 52.381 0.00 0.00 40.04 3.08
499 500 2.223829 CAGTTCATCTGCCCGTAGGTAG 60.224 54.545 0.00 0.00 46.71 3.18
509 510 3.165606 CGTAGGTAGGTCGGTCACT 57.834 57.895 0.00 0.00 0.00 3.41
510 511 1.012841 CGTAGGTAGGTCGGTCACTC 58.987 60.000 0.00 0.00 0.00 3.51
511 512 1.387539 GTAGGTAGGTCGGTCACTCC 58.612 60.000 0.00 0.00 0.00 3.85
513 514 0.323542 AGGTAGGTCGGTCACTCCAG 60.324 60.000 0.00 0.00 35.57 3.86
515 516 0.966370 GTAGGTCGGTCACTCCAGCT 60.966 60.000 0.00 0.00 35.57 4.24
517 518 1.122019 AGGTCGGTCACTCCAGCTTT 61.122 55.000 0.00 0.00 35.57 3.51
519 520 1.594331 GTCGGTCACTCCAGCTTTTT 58.406 50.000 0.00 0.00 35.57 1.94
521 522 3.335579 GTCGGTCACTCCAGCTTTTTAT 58.664 45.455 0.00 0.00 35.57 1.40
522 523 3.751698 GTCGGTCACTCCAGCTTTTTATT 59.248 43.478 0.00 0.00 35.57 1.40
523 524 4.000988 TCGGTCACTCCAGCTTTTTATTC 58.999 43.478 0.00 0.00 35.57 1.75
524 525 4.003648 CGGTCACTCCAGCTTTTTATTCT 58.996 43.478 0.00 0.00 35.57 2.40
526 527 5.292101 CGGTCACTCCAGCTTTTTATTCTAG 59.708 44.000 0.00 0.00 35.57 2.43
527 528 6.407202 GGTCACTCCAGCTTTTTATTCTAGA 58.593 40.000 0.00 0.00 35.97 2.43
528 529 7.051000 GGTCACTCCAGCTTTTTATTCTAGAT 58.949 38.462 0.00 0.00 35.97 1.98
529 530 7.554476 GGTCACTCCAGCTTTTTATTCTAGATT 59.446 37.037 0.00 0.00 35.97 2.40
530 531 8.951243 GTCACTCCAGCTTTTTATTCTAGATTT 58.049 33.333 0.00 0.00 0.00 2.17
531 532 9.520515 TCACTCCAGCTTTTTATTCTAGATTTT 57.479 29.630 0.00 0.00 0.00 1.82
543 544 8.807948 TTATTCTAGATTTTTCTGTTCCCCTG 57.192 34.615 0.00 0.00 0.00 4.45
544 545 5.179452 TCTAGATTTTTCTGTTCCCCTGG 57.821 43.478 0.00 0.00 0.00 4.45
545 546 3.903530 AGATTTTTCTGTTCCCCTGGT 57.096 42.857 0.00 0.00 0.00 4.00
548 549 5.711698 AGATTTTTCTGTTCCCCTGGTTTA 58.288 37.500 0.00 0.00 0.00 2.01
549 550 5.775195 AGATTTTTCTGTTCCCCTGGTTTAG 59.225 40.000 0.00 0.00 0.00 1.85
550 551 4.799715 TTTTCTGTTCCCCTGGTTTAGA 57.200 40.909 0.00 0.00 0.00 2.10
551 552 5.333566 TTTTCTGTTCCCCTGGTTTAGAT 57.666 39.130 0.00 0.00 0.00 1.98
552 553 5.333566 TTTCTGTTCCCCTGGTTTAGATT 57.666 39.130 0.00 0.00 0.00 2.40
553 554 5.333566 TTCTGTTCCCCTGGTTTAGATTT 57.666 39.130 0.00 0.00 0.00 2.17
554 555 4.918588 TCTGTTCCCCTGGTTTAGATTTC 58.081 43.478 0.00 0.00 0.00 2.17
557 558 4.141135 TGTTCCCCTGGTTTAGATTTCACA 60.141 41.667 0.00 0.00 0.00 3.58
558 559 4.946160 TCCCCTGGTTTAGATTTCACAT 57.054 40.909 0.00 0.00 0.00 3.21
559 560 6.184789 GTTCCCCTGGTTTAGATTTCACATA 58.815 40.000 0.00 0.00 0.00 2.29
560 561 6.590656 TCCCCTGGTTTAGATTTCACATAT 57.409 37.500 0.00 0.00 0.00 1.78
562 563 7.418378 TCCCCTGGTTTAGATTTCACATATTT 58.582 34.615 0.00 0.00 0.00 1.40
564 565 9.196139 CCCCTGGTTTAGATTTCACATATTTAA 57.804 33.333 0.00 0.00 0.00 1.52
629 630 4.545610 TCATGACTTTGAAAAATGTCCGC 58.454 39.130 0.00 0.00 0.00 5.54
630 631 4.037327 TCATGACTTTGAAAAATGTCCGCA 59.963 37.500 0.00 0.00 0.00 5.69
631 632 3.701241 TGACTTTGAAAAATGTCCGCAC 58.299 40.909 0.00 0.00 0.00 5.34
632 633 3.129462 TGACTTTGAAAAATGTCCGCACA 59.871 39.130 0.00 0.00 36.78 4.57
633 634 4.202101 TGACTTTGAAAAATGTCCGCACAT 60.202 37.500 0.00 0.00 45.89 3.21
667 668 9.940166 AAAATTCATGCATTTGAGAAAAAGTTC 57.060 25.926 4.02 0.00 0.00 3.01
668 669 6.752335 TTCATGCATTTGAGAAAAAGTTCG 57.248 33.333 0.00 0.00 38.90 3.95
669 670 4.681025 TCATGCATTTGAGAAAAAGTTCGC 59.319 37.500 0.00 0.00 38.90 4.70
670 671 4.039151 TGCATTTGAGAAAAAGTTCGCA 57.961 36.364 0.00 0.00 41.18 5.10
677 678 5.687770 TGAGAAAAAGTTCGCAATGATGA 57.312 34.783 0.00 0.00 40.14 2.92
678 679 6.070897 TGAGAAAAAGTTCGCAATGATGAA 57.929 33.333 0.00 0.00 40.14 2.57
679 680 6.502652 TGAGAAAAAGTTCGCAATGATGAAA 58.497 32.000 0.00 0.00 40.14 2.69
680 681 6.977502 TGAGAAAAAGTTCGCAATGATGAAAA 59.022 30.769 0.00 0.00 40.14 2.29
681 682 7.490725 TGAGAAAAAGTTCGCAATGATGAAAAA 59.509 29.630 0.00 0.00 40.14 1.94
744 746 5.092968 TGGATTTGAAAAGGGTTCATGGAT 58.907 37.500 0.00 0.00 0.00 3.41
827 829 4.669206 AAAAGTTCATGCATTGTGTGGA 57.331 36.364 0.00 0.00 0.00 4.02
1034 1048 4.905269 AGAACGAGAACAAAAACTTTCCG 58.095 39.130 0.00 0.00 0.00 4.30
1146 1160 4.553330 TCTACCTTAAGCACCAAAGAGG 57.447 45.455 0.00 0.00 45.67 3.69
1171 1185 1.477700 TGTGTACCTTATTCCGTCCCG 59.522 52.381 0.00 0.00 0.00 5.14
1184 1198 3.552384 TCCCGAGGTTGGCACGTT 61.552 61.111 0.00 0.00 0.00 3.99
1228 1242 1.408969 GCCCCTGGTTTTCTCAACAA 58.591 50.000 0.00 0.00 0.00 2.83
1285 1299 9.695526 CTCATCAATCAACAATTAAAAAGGTCA 57.304 29.630 0.00 0.00 0.00 4.02
1286 1300 9.474920 TCATCAATCAACAATTAAAAAGGTCAC 57.525 29.630 0.00 0.00 0.00 3.67
1403 1462 3.197790 CTGCCCCTCGATGCGTTG 61.198 66.667 0.00 0.00 0.00 4.10
1538 1597 1.400494 GACAAACACGAGGTTGTGCTT 59.600 47.619 21.14 0.00 43.74 3.91
1552 1611 1.017387 GTGCTTCTAAAGGGCGATGG 58.983 55.000 0.00 0.00 0.00 3.51
1560 1619 1.779061 AAAGGGCGATGGTGTCCTGT 61.779 55.000 0.00 0.00 0.00 4.00
1791 1852 6.570764 GCTTAACCCGACAACAAATTGGATTA 60.571 38.462 0.00 0.00 40.42 1.75
1792 1853 5.385509 AACCCGACAACAAATTGGATTAG 57.614 39.130 0.00 0.00 40.42 1.73
1799 1860 7.062848 CGACAACAAATTGGATTAGTTTTTGC 58.937 34.615 0.00 0.00 40.42 3.68
1951 15568 5.762179 AGTCTTCTTGGACATTGTATCCA 57.238 39.130 0.00 0.00 44.74 3.41
2726 16415 6.534634 ACTGTGTTTCTAGAAGCAGGTTTAT 58.465 36.000 20.83 5.49 32.25 1.40
2752 16441 2.092838 GCTCGTGTTCTTGAAATCCTCG 59.907 50.000 0.00 0.00 0.00 4.63
2781 16471 6.783708 AGAACTATAGTCTCTCCACCAAAG 57.216 41.667 5.70 0.00 0.00 2.77
3120 16823 3.829026 GGAGGGAAGAAATCACTGCTTTT 59.171 43.478 0.00 0.00 45.83 2.27
3133 16836 6.223138 TCACTGCTTTTAGATGTACAAACG 57.777 37.500 0.00 0.00 0.00 3.60
3345 17051 2.224769 TGGGACCAATGAGGACTTGTTC 60.225 50.000 0.00 0.00 41.22 3.18
3419 17128 3.990469 AGACGTGATAGTTGCTCTTGTTG 59.010 43.478 0.00 0.00 0.00 3.33
3445 17154 6.997476 TGCAGGCATGATAATAAGTGTATCAA 59.003 34.615 0.62 0.00 40.44 2.57
3513 17222 6.263842 TCAATAGGCAAATTCAGATGTCCATC 59.736 38.462 0.00 0.00 38.09 3.51
3514 17223 3.972133 AGGCAAATTCAGATGTCCATCA 58.028 40.909 9.76 0.00 40.22 3.07
3518 17227 4.202121 GCAAATTCAGATGTCCATCATGCT 60.202 41.667 9.76 0.00 40.22 3.79
3540 17249 5.642919 GCTATGATTCATTCACCAGGATCTC 59.357 44.000 4.14 0.00 37.11 2.75
3551 17260 5.523588 TCACCAGGATCTCTAGAAGTTCAT 58.476 41.667 5.50 0.00 0.00 2.57
3552 17261 5.960811 TCACCAGGATCTCTAGAAGTTCATT 59.039 40.000 5.50 0.00 0.00 2.57
3553 17262 7.126061 TCACCAGGATCTCTAGAAGTTCATTA 58.874 38.462 5.50 0.00 0.00 1.90
3555 17264 8.428063 CACCAGGATCTCTAGAAGTTCATTAAT 58.572 37.037 5.50 0.00 0.00 1.40
3556 17265 8.646900 ACCAGGATCTCTAGAAGTTCATTAATC 58.353 37.037 5.50 1.86 0.00 1.75
3585 17294 8.671384 TTCAATTACGATAGGGGAAACTAATG 57.329 34.615 0.00 0.00 43.77 1.90
3590 17299 5.594926 ACGATAGGGGAAACTAATGTAACG 58.405 41.667 0.00 0.00 43.77 3.18
3746 17577 7.795734 CGCTGAGTATTGAAAACAATGCTATAG 59.204 37.037 11.95 13.21 37.57 1.31
3756 17587 7.441157 TGAAAACAATGCTATAGCGCTTACTAT 59.559 33.333 18.68 5.20 45.83 2.12
3802 17633 7.554959 AGACTACACTCCTTCCTTTTCATTA 57.445 36.000 0.00 0.00 0.00 1.90
3931 18841 7.938140 TTTCATAAGAATAAACCAGACAGGG 57.062 36.000 0.00 0.00 36.05 4.45
4032 20539 1.212688 TCACACCATCATCCCCACATC 59.787 52.381 0.00 0.00 0.00 3.06
4046 20553 4.139786 CCCCACATCCAGTCATATGAAAG 58.860 47.826 7.07 2.83 0.00 2.62
4050 20557 6.016527 CCCACATCCAGTCATATGAAAGATTG 60.017 42.308 7.07 5.91 0.00 2.67
4051 20558 6.436261 CACATCCAGTCATATGAAAGATTGC 58.564 40.000 7.07 0.00 0.00 3.56
4055 20562 5.369404 TCCAGTCATATGAAAGATTGCCCTA 59.631 40.000 7.07 0.00 0.00 3.53
4057 20564 6.718454 CCAGTCATATGAAAGATTGCCCTAAT 59.282 38.462 7.07 0.00 0.00 1.73
4058 20565 7.884877 CCAGTCATATGAAAGATTGCCCTAATA 59.115 37.037 7.07 0.00 0.00 0.98
4200 20890 6.713762 TGAACTTGAAAACATTGACCTCAT 57.286 33.333 0.00 0.00 0.00 2.90
4315 21005 2.033448 TTGCGGGCGGAATTCACT 59.967 55.556 7.93 0.00 0.00 3.41
4330 21020 6.586344 GGAATTCACTAGGATCAAGATCACA 58.414 40.000 7.93 0.00 39.54 3.58
4346 21036 1.621317 TCACAACGCTCAAGTGGGATA 59.379 47.619 0.00 0.00 34.17 2.59
4509 21200 9.553064 GATCCTTATGTTTGTGATAGTGATTCT 57.447 33.333 0.00 0.00 0.00 2.40
4717 21460 9.487790 CTCTCTTTATGAAATCTTGGTATCCTC 57.512 37.037 0.00 0.00 0.00 3.71
4718 21461 8.144478 TCTCTTTATGAAATCTTGGTATCCTCG 58.856 37.037 0.00 0.00 0.00 4.63
4719 21462 7.792032 TCTTTATGAAATCTTGGTATCCTCGT 58.208 34.615 0.00 0.00 0.00 4.18
4720 21463 7.926555 TCTTTATGAAATCTTGGTATCCTCGTC 59.073 37.037 0.00 0.00 0.00 4.20
4722 21465 5.677319 TGAAATCTTGGTATCCTCGTCTT 57.323 39.130 0.00 0.00 0.00 3.01
4723 21466 5.661458 TGAAATCTTGGTATCCTCGTCTTC 58.339 41.667 0.00 0.00 0.00 2.87
4724 21467 5.422331 TGAAATCTTGGTATCCTCGTCTTCT 59.578 40.000 0.00 0.00 0.00 2.85
4725 21468 5.941555 AATCTTGGTATCCTCGTCTTCTT 57.058 39.130 0.00 0.00 0.00 2.52
4726 21469 4.720649 TCTTGGTATCCTCGTCTTCTTG 57.279 45.455 0.00 0.00 0.00 3.02
4727 21470 3.447586 TCTTGGTATCCTCGTCTTCTTGG 59.552 47.826 0.00 0.00 0.00 3.61
4728 21471 3.095912 TGGTATCCTCGTCTTCTTGGA 57.904 47.619 0.00 0.00 0.00 3.53
4729 21472 3.643237 TGGTATCCTCGTCTTCTTGGAT 58.357 45.455 0.00 0.00 41.59 3.41
4731 21474 4.469945 TGGTATCCTCGTCTTCTTGGATTT 59.530 41.667 0.00 0.00 39.67 2.17
4732 21475 5.045869 TGGTATCCTCGTCTTCTTGGATTTT 60.046 40.000 0.00 0.00 39.67 1.82
4733 21476 5.880887 GGTATCCTCGTCTTCTTGGATTTTT 59.119 40.000 0.00 0.00 39.67 1.94
4734 21477 7.046033 GGTATCCTCGTCTTCTTGGATTTTTA 58.954 38.462 0.00 0.00 39.67 1.52
4819 21563 7.117956 GGTGACTCTTTGTACTCCAATTCTTAC 59.882 40.741 0.00 0.00 31.81 2.34
4843 21587 5.392811 CCCAGAGAGATCTTTGTTTGCATTC 60.393 44.000 0.00 0.00 0.00 2.67
4905 21649 1.156736 GCAAACTTGGCTAGAGCGAA 58.843 50.000 2.20 0.00 43.26 4.70
4915 21659 1.801025 GCTAGAGCGAAAGTCTGAGGC 60.801 57.143 0.00 0.00 0.00 4.70
4929 21673 4.079253 GTCTGAGGCCCTATTTGTTTCAA 58.921 43.478 0.00 0.00 0.00 2.69
5000 21744 9.691362 TTTTGAATTAACTTTGATAGTGAAGCC 57.309 29.630 0.00 0.00 37.12 4.35
5001 21745 7.391148 TGAATTAACTTTGATAGTGAAGCCC 57.609 36.000 0.00 0.00 37.12 5.19
5002 21746 6.093495 TGAATTAACTTTGATAGTGAAGCCCG 59.907 38.462 0.00 0.00 37.12 6.13
5003 21747 3.695830 AACTTTGATAGTGAAGCCCGA 57.304 42.857 0.00 0.00 37.12 5.14
5004 21748 3.695830 ACTTTGATAGTGAAGCCCGAA 57.304 42.857 0.00 0.00 35.19 4.30
5005 21749 4.222124 ACTTTGATAGTGAAGCCCGAAT 57.778 40.909 0.00 0.00 35.19 3.34
5006 21750 4.192317 ACTTTGATAGTGAAGCCCGAATC 58.808 43.478 0.00 0.00 35.19 2.52
5007 21751 2.910688 TGATAGTGAAGCCCGAATCC 57.089 50.000 0.00 0.00 0.00 3.01
5008 21752 2.115427 TGATAGTGAAGCCCGAATCCA 58.885 47.619 0.00 0.00 0.00 3.41
5009 21753 2.503765 TGATAGTGAAGCCCGAATCCAA 59.496 45.455 0.00 0.00 0.00 3.53
5010 21754 3.136443 TGATAGTGAAGCCCGAATCCAAT 59.864 43.478 0.00 0.00 0.00 3.16
5011 21755 2.514458 AGTGAAGCCCGAATCCAATT 57.486 45.000 0.00 0.00 0.00 2.32
5012 21756 2.807676 AGTGAAGCCCGAATCCAATTT 58.192 42.857 0.00 0.00 0.00 1.82
5013 21757 3.963129 AGTGAAGCCCGAATCCAATTTA 58.037 40.909 0.00 0.00 0.00 1.40
5014 21758 3.947834 AGTGAAGCCCGAATCCAATTTAG 59.052 43.478 0.00 0.00 0.00 1.85
5015 21759 3.066760 GTGAAGCCCGAATCCAATTTAGG 59.933 47.826 0.00 0.00 0.00 2.69
5016 21760 1.692411 AGCCCGAATCCAATTTAGGC 58.308 50.000 0.00 0.00 39.60 3.93
5017 21761 0.673985 GCCCGAATCCAATTTAGGCC 59.326 55.000 0.00 0.00 35.74 5.19
5018 21762 2.026905 GCCCGAATCCAATTTAGGCCA 61.027 52.381 5.01 0.00 35.74 5.36
5019 21763 2.597455 CCCGAATCCAATTTAGGCCAT 58.403 47.619 5.01 0.00 0.00 4.40
5020 21764 2.965147 CCCGAATCCAATTTAGGCCATT 59.035 45.455 5.01 0.00 0.00 3.16
5021 21765 3.387699 CCCGAATCCAATTTAGGCCATTT 59.612 43.478 5.01 0.00 0.00 2.32
5022 21766 4.141733 CCCGAATCCAATTTAGGCCATTTT 60.142 41.667 5.01 0.00 0.00 1.82
5023 21767 5.049828 CCGAATCCAATTTAGGCCATTTTC 58.950 41.667 5.01 0.00 0.00 2.29
5144 21920 2.883386 CAAATAGGGCCTGAATCTCAGC 59.117 50.000 18.53 0.00 42.98 4.26
5145 21921 0.683973 ATAGGGCCTGAATCTCAGCG 59.316 55.000 18.53 0.00 42.98 5.18
5146 21922 0.397114 TAGGGCCTGAATCTCAGCGA 60.397 55.000 18.53 0.00 42.98 4.93
5147 21923 1.053264 AGGGCCTGAATCTCAGCGAT 61.053 55.000 4.50 0.00 42.98 4.58
5148 21924 0.179034 GGGCCTGAATCTCAGCGATT 60.179 55.000 0.84 0.00 42.98 3.34
5149 21925 1.673168 GGCCTGAATCTCAGCGATTT 58.327 50.000 0.00 0.00 42.98 2.17
5150 21926 2.019984 GGCCTGAATCTCAGCGATTTT 58.980 47.619 0.00 0.00 42.98 1.82
5151 21927 3.206150 GGCCTGAATCTCAGCGATTTTA 58.794 45.455 0.00 0.00 42.98 1.52
5152 21928 3.002759 GGCCTGAATCTCAGCGATTTTAC 59.997 47.826 0.00 0.00 42.98 2.01
5201 21986 4.637483 TTTCCTGCAAGTTCTTCAACTG 57.363 40.909 0.00 0.00 42.45 3.16
5209 21994 4.274459 GCAAGTTCTTCAACTGAGATGTGT 59.726 41.667 0.00 0.00 42.45 3.72
5216 22001 6.533730 TCTTCAACTGAGATGTGTAACCAAT 58.466 36.000 0.00 0.00 34.36 3.16
5343 22131 2.027837 GGCTTTGGTGATTGCCATTTCT 60.028 45.455 0.00 0.00 44.34 2.52
5380 22168 3.463329 AGCCAATGGGATTACCTACATGT 59.537 43.478 2.69 2.69 41.11 3.21
5415 22203 8.836413 TGGCTTCTGATAATTATTTACCTTTCG 58.164 33.333 0.00 0.00 0.00 3.46
5426 22214 2.712057 TACCTTTCGTTGTCGAGGAC 57.288 50.000 0.00 0.00 46.81 3.85
5503 22291 4.038271 AGCTTCTGAAAATCATGGTCCA 57.962 40.909 0.00 0.00 0.00 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 8.010733 TCTCAGACATCCAAAATTTGTCTTTT 57.989 30.769 6.94 0.00 45.88 2.27
4 5 7.428826 AGTTTCTCAGACATCCAAAATTTGTC 58.571 34.615 4.92 0.00 40.00 3.18
9 10 8.010733 TCAAAAGTTTCTCAGACATCCAAAAT 57.989 30.769 0.00 0.00 0.00 1.82
14 15 7.324616 CGATTTTCAAAAGTTTCTCAGACATCC 59.675 37.037 0.00 0.00 0.00 3.51
16 17 6.638468 GCGATTTTCAAAAGTTTCTCAGACAT 59.362 34.615 0.00 0.00 0.00 3.06
17 18 5.971202 GCGATTTTCAAAAGTTTCTCAGACA 59.029 36.000 0.00 0.00 0.00 3.41
18 19 5.971202 TGCGATTTTCAAAAGTTTCTCAGAC 59.029 36.000 0.00 0.00 0.00 3.51
19 20 5.971202 GTGCGATTTTCAAAAGTTTCTCAGA 59.029 36.000 0.00 0.00 0.00 3.27
20 21 5.973565 AGTGCGATTTTCAAAAGTTTCTCAG 59.026 36.000 0.00 0.00 0.00 3.35
21 22 5.743398 CAGTGCGATTTTCAAAAGTTTCTCA 59.257 36.000 0.00 0.00 0.00 3.27
22 23 5.743872 ACAGTGCGATTTTCAAAAGTTTCTC 59.256 36.000 0.00 0.00 0.00 2.87
27 28 4.798387 GTGAACAGTGCGATTTTCAAAAGT 59.202 37.500 0.00 0.00 30.00 2.66
28 29 4.086126 CGTGAACAGTGCGATTTTCAAAAG 60.086 41.667 0.00 0.00 30.00 2.27
29 30 3.788694 CGTGAACAGTGCGATTTTCAAAA 59.211 39.130 0.00 0.00 30.00 2.44
30 31 3.358775 CGTGAACAGTGCGATTTTCAAA 58.641 40.909 0.00 0.00 30.00 2.69
31 32 2.852901 GCGTGAACAGTGCGATTTTCAA 60.853 45.455 0.00 0.00 30.00 2.69
32 33 1.333702 GCGTGAACAGTGCGATTTTCA 60.334 47.619 0.00 0.00 0.00 2.69
33 34 1.318251 GCGTGAACAGTGCGATTTTC 58.682 50.000 0.00 0.00 0.00 2.29
36 37 1.301716 AGGCGTGAACAGTGCGATT 60.302 52.632 0.00 0.00 0.00 3.34
37 38 2.029288 CAGGCGTGAACAGTGCGAT 61.029 57.895 0.00 0.00 0.00 4.58
38 39 2.434658 ATCAGGCGTGAACAGTGCGA 62.435 55.000 13.87 0.00 35.88 5.10
39 40 1.568612 AATCAGGCGTGAACAGTGCG 61.569 55.000 13.87 0.00 35.88 5.34
40 41 0.593128 AAATCAGGCGTGAACAGTGC 59.407 50.000 13.87 0.00 35.88 4.40
41 42 4.393062 AGATAAAATCAGGCGTGAACAGTG 59.607 41.667 13.87 0.00 35.88 3.66
42 43 4.579869 AGATAAAATCAGGCGTGAACAGT 58.420 39.130 13.87 2.17 35.88 3.55
43 44 5.551760 AAGATAAAATCAGGCGTGAACAG 57.448 39.130 13.87 0.00 35.88 3.16
44 45 5.957842 AAAGATAAAATCAGGCGTGAACA 57.042 34.783 13.87 0.00 35.88 3.18
66 67 3.401033 TTCGAGGAGCTCATGACAAAA 57.599 42.857 17.19 0.00 0.00 2.44
67 68 3.264947 CATTCGAGGAGCTCATGACAAA 58.735 45.455 17.19 2.12 0.00 2.83
69 70 1.827344 ACATTCGAGGAGCTCATGACA 59.173 47.619 17.19 0.00 0.00 3.58
71 72 1.410517 GGACATTCGAGGAGCTCATGA 59.589 52.381 17.19 6.88 0.00 3.07
72 73 1.137675 TGGACATTCGAGGAGCTCATG 59.862 52.381 17.19 12.42 0.00 3.07
73 74 1.489481 TGGACATTCGAGGAGCTCAT 58.511 50.000 17.19 8.81 0.00 2.90
74 75 1.266178 TTGGACATTCGAGGAGCTCA 58.734 50.000 17.19 0.00 0.00 4.26
75 76 2.003301 GTTTGGACATTCGAGGAGCTC 58.997 52.381 4.71 4.71 0.00 4.09
76 77 1.625818 AGTTTGGACATTCGAGGAGCT 59.374 47.619 0.00 0.00 0.00 4.09
77 78 2.100605 AGTTTGGACATTCGAGGAGC 57.899 50.000 0.00 0.00 0.00 4.70
78 79 3.433615 GTGAAGTTTGGACATTCGAGGAG 59.566 47.826 0.00 0.00 0.00 3.69
79 80 3.181459 TGTGAAGTTTGGACATTCGAGGA 60.181 43.478 0.00 0.00 0.00 3.71
80 81 3.138304 TGTGAAGTTTGGACATTCGAGG 58.862 45.455 0.00 0.00 0.00 4.63
81 82 4.811555 TTGTGAAGTTTGGACATTCGAG 57.188 40.909 0.00 0.00 0.00 4.04
82 83 5.568685 TTTTGTGAAGTTTGGACATTCGA 57.431 34.783 0.00 0.00 0.00 3.71
83 84 6.826893 AATTTTGTGAAGTTTGGACATTCG 57.173 33.333 0.00 0.00 0.00 3.34
85 86 7.094463 TGCAAAATTTTGTGAAGTTTGGACATT 60.094 29.630 27.13 0.00 40.24 2.71
86 87 6.373774 TGCAAAATTTTGTGAAGTTTGGACAT 59.626 30.769 27.13 0.00 40.24 3.06
88 89 6.020984 GTGCAAAATTTTGTGAAGTTTGGAC 58.979 36.000 27.13 16.19 40.24 4.02
89 90 5.163913 CGTGCAAAATTTTGTGAAGTTTGGA 60.164 36.000 27.13 7.54 40.24 3.53
90 91 5.020758 CGTGCAAAATTTTGTGAAGTTTGG 58.979 37.500 27.13 3.47 40.24 3.28
91 92 5.020758 CCGTGCAAAATTTTGTGAAGTTTG 58.979 37.500 27.13 11.78 40.24 2.93
92 93 4.932200 TCCGTGCAAAATTTTGTGAAGTTT 59.068 33.333 27.13 0.00 40.24 2.66
93 94 4.499183 TCCGTGCAAAATTTTGTGAAGTT 58.501 34.783 27.13 0.00 40.24 2.66
95 96 4.111916 ACTCCGTGCAAAATTTTGTGAAG 58.888 39.130 27.13 19.60 40.24 3.02
96 97 4.116747 ACTCCGTGCAAAATTTTGTGAA 57.883 36.364 27.13 13.83 40.24 3.18
98 99 3.862267 TGAACTCCGTGCAAAATTTTGTG 59.138 39.130 27.13 18.39 40.24 3.33
99 100 3.862845 GTGAACTCCGTGCAAAATTTTGT 59.137 39.130 27.13 9.04 40.24 2.83
100 101 3.061271 CGTGAACTCCGTGCAAAATTTTG 60.061 43.478 23.74 23.74 41.03 2.44
102 103 2.726633 CGTGAACTCCGTGCAAAATTT 58.273 42.857 0.00 0.00 0.00 1.82
104 105 0.040425 GCGTGAACTCCGTGCAAAAT 60.040 50.000 0.00 0.00 0.00 1.82
105 106 1.353804 GCGTGAACTCCGTGCAAAA 59.646 52.632 0.00 0.00 0.00 2.44
108 109 2.964925 GTGCGTGAACTCCGTGCA 60.965 61.111 0.00 0.00 0.00 4.57
109 110 2.943345 CTGTGCGTGAACTCCGTGC 61.943 63.158 0.00 0.00 0.00 5.34
110 111 2.310233 CCTGTGCGTGAACTCCGTG 61.310 63.158 0.00 0.00 0.00 4.94
112 113 1.734477 CTCCTGTGCGTGAACTCCG 60.734 63.158 0.00 0.00 0.00 4.63
113 114 0.033504 TTCTCCTGTGCGTGAACTCC 59.966 55.000 0.00 0.00 0.00 3.85
115 116 1.620819 AGATTCTCCTGTGCGTGAACT 59.379 47.619 0.00 0.00 0.00 3.01
116 117 2.086054 AGATTCTCCTGTGCGTGAAC 57.914 50.000 0.00 0.00 0.00 3.18
118 119 1.941209 GCAAGATTCTCCTGTGCGTGA 60.941 52.381 0.00 0.00 0.00 4.35
119 120 0.445436 GCAAGATTCTCCTGTGCGTG 59.555 55.000 0.00 0.00 0.00 5.34
120 121 0.035317 TGCAAGATTCTCCTGTGCGT 59.965 50.000 4.17 0.00 38.05 5.24
121 122 0.445436 GTGCAAGATTCTCCTGTGCG 59.555 55.000 0.00 0.00 38.05 5.34
122 123 1.818642 AGTGCAAGATTCTCCTGTGC 58.181 50.000 0.00 1.85 35.75 4.57
123 124 3.930336 TGTAGTGCAAGATTCTCCTGTG 58.070 45.455 0.00 0.00 0.00 3.66
124 125 4.623932 TTGTAGTGCAAGATTCTCCTGT 57.376 40.909 0.00 0.00 32.52 4.00
125 126 5.947228 TTTTGTAGTGCAAGATTCTCCTG 57.053 39.130 0.00 0.00 38.47 3.86
171 172 7.571080 ACAGTACCACGATTTAAAAAGGAAA 57.429 32.000 0.00 0.00 0.00 3.13
174 175 6.854381 GTGAACAGTACCACGATTTAAAAAGG 59.146 38.462 0.00 0.00 0.00 3.11
175 176 6.854381 GGTGAACAGTACCACGATTTAAAAAG 59.146 38.462 0.00 0.00 38.12 2.27
177 178 5.821470 TGGTGAACAGTACCACGATTTAAAA 59.179 36.000 0.00 0.00 43.00 1.52
178 179 5.366460 TGGTGAACAGTACCACGATTTAAA 58.634 37.500 0.00 0.00 43.00 1.52
181 182 3.399330 CTGGTGAACAGTACCACGATTT 58.601 45.455 0.00 0.00 43.00 2.17
182 183 2.289444 CCTGGTGAACAGTACCACGATT 60.289 50.000 0.00 0.00 46.06 3.34
186 187 0.396811 AGCCTGGTGAACAGTACCAC 59.603 55.000 0.00 0.00 46.06 4.16
187 188 0.685097 GAGCCTGGTGAACAGTACCA 59.315 55.000 0.00 0.00 46.06 3.25
188 189 0.685097 TGAGCCTGGTGAACAGTACC 59.315 55.000 0.00 0.00 46.06 3.34
191 192 0.326264 GGATGAGCCTGGTGAACAGT 59.674 55.000 0.00 0.00 46.06 3.55
192 193 4.926173 CTCGGATGAGCCTGGTGAACAG 62.926 59.091 0.00 0.00 39.00 3.16
193 194 1.191489 TCGGATGAGCCTGGTGAACA 61.191 55.000 0.00 0.00 0.00 3.18
194 195 0.460987 CTCGGATGAGCCTGGTGAAC 60.461 60.000 0.00 0.00 34.96 3.18
195 196 1.900351 CTCGGATGAGCCTGGTGAA 59.100 57.895 0.00 0.00 34.96 3.18
215 216 0.254747 TAATTCAACCCAGAGCCCGG 59.745 55.000 0.00 0.00 0.00 5.73
216 217 2.222027 GATAATTCAACCCAGAGCCCG 58.778 52.381 0.00 0.00 0.00 6.13
217 218 3.217626 CTGATAATTCAACCCAGAGCCC 58.782 50.000 0.00 0.00 0.00 5.19
218 219 3.891049 ACTGATAATTCAACCCAGAGCC 58.109 45.455 0.00 0.00 0.00 4.70
219 220 4.513318 GCTACTGATAATTCAACCCAGAGC 59.487 45.833 0.00 0.00 0.00 4.09
220 221 5.923204 AGCTACTGATAATTCAACCCAGAG 58.077 41.667 0.00 0.00 0.00 3.35
221 222 5.957771 AGCTACTGATAATTCAACCCAGA 57.042 39.130 0.00 0.00 0.00 3.86
222 223 6.183361 ACCTAGCTACTGATAATTCAACCCAG 60.183 42.308 0.00 0.00 0.00 4.45
224 225 6.176014 ACCTAGCTACTGATAATTCAACCC 57.824 41.667 0.00 0.00 0.00 4.11
225 226 6.224584 GGACCTAGCTACTGATAATTCAACC 58.775 44.000 0.00 0.00 0.00 3.77
226 227 6.183360 TGGGACCTAGCTACTGATAATTCAAC 60.183 42.308 0.00 0.00 0.00 3.18
228 229 5.464069 TGGGACCTAGCTACTGATAATTCA 58.536 41.667 0.00 0.00 0.00 2.57
229 230 6.183360 TGTTGGGACCTAGCTACTGATAATTC 60.183 42.308 0.00 0.00 0.00 2.17
230 231 5.665812 TGTTGGGACCTAGCTACTGATAATT 59.334 40.000 0.00 0.00 0.00 1.40
231 232 5.216622 TGTTGGGACCTAGCTACTGATAAT 58.783 41.667 0.00 0.00 0.00 1.28
234 235 3.116096 TGTTGGGACCTAGCTACTGAT 57.884 47.619 0.00 0.00 0.00 2.90
236 237 3.914426 AATGTTGGGACCTAGCTACTG 57.086 47.619 0.00 0.00 0.00 2.74
237 238 6.576778 AATTAATGTTGGGACCTAGCTACT 57.423 37.500 0.00 0.00 0.00 2.57
238 239 8.919777 AATAATTAATGTTGGGACCTAGCTAC 57.080 34.615 0.00 0.00 0.00 3.58
240 241 9.574516 CTTAATAATTAATGTTGGGACCTAGCT 57.425 33.333 0.00 0.00 0.00 3.32
241 242 9.569122 TCTTAATAATTAATGTTGGGACCTAGC 57.431 33.333 0.00 0.00 0.00 3.42
245 246 9.416284 TCCTTCTTAATAATTAATGTTGGGACC 57.584 33.333 0.00 0.00 0.00 4.46
266 267 9.959749 TTGAAGTAACATGTAATTTGTTCCTTC 57.040 29.630 14.93 14.93 44.12 3.46
279 280 9.651913 ATGTTTGTTCTTTTTGAAGTAACATGT 57.348 25.926 0.00 0.00 42.21 3.21
285 286 9.589111 GGGTAAATGTTTGTTCTTTTTGAAGTA 57.411 29.630 0.00 0.00 35.01 2.24
286 287 7.551262 GGGGTAAATGTTTGTTCTTTTTGAAGT 59.449 33.333 0.00 0.00 35.01 3.01
288 289 7.334671 GTGGGGTAAATGTTTGTTCTTTTTGAA 59.665 33.333 0.00 0.00 0.00 2.69
290 291 6.595716 TGTGGGGTAAATGTTTGTTCTTTTTG 59.404 34.615 0.00 0.00 0.00 2.44
291 292 6.712276 TGTGGGGTAAATGTTTGTTCTTTTT 58.288 32.000 0.00 0.00 0.00 1.94
293 294 5.941555 TGTGGGGTAAATGTTTGTTCTTT 57.058 34.783 0.00 0.00 0.00 2.52
294 295 5.941555 TTGTGGGGTAAATGTTTGTTCTT 57.058 34.783 0.00 0.00 0.00 2.52
295 296 5.941555 TTTGTGGGGTAAATGTTTGTTCT 57.058 34.783 0.00 0.00 0.00 3.01
296 297 6.986904 TTTTTGTGGGGTAAATGTTTGTTC 57.013 33.333 0.00 0.00 0.00 3.18
334 335 9.643693 CAACTACAATCCTTTTGCATTTTAGAT 57.356 29.630 0.00 0.00 0.00 1.98
335 336 8.855110 TCAACTACAATCCTTTTGCATTTTAGA 58.145 29.630 0.00 0.00 0.00 2.10
336 337 9.474920 TTCAACTACAATCCTTTTGCATTTTAG 57.525 29.630 0.00 0.00 0.00 1.85
337 338 9.474920 CTTCAACTACAATCCTTTTGCATTTTA 57.525 29.630 0.00 0.00 0.00 1.52
339 340 7.725251 TCTTCAACTACAATCCTTTTGCATTT 58.275 30.769 0.00 0.00 0.00 2.32
340 341 7.288810 TCTTCAACTACAATCCTTTTGCATT 57.711 32.000 0.00 0.00 0.00 3.56
341 342 6.899393 TCTTCAACTACAATCCTTTTGCAT 57.101 33.333 0.00 0.00 0.00 3.96
342 343 6.707440 TTCTTCAACTACAATCCTTTTGCA 57.293 33.333 0.00 0.00 0.00 4.08
343 344 9.860898 ATATTTCTTCAACTACAATCCTTTTGC 57.139 29.630 0.00 0.00 0.00 3.68
356 357 9.890629 TTGTCTACATGCTATATTTCTTCAACT 57.109 29.630 0.00 0.00 0.00 3.16
380 381 9.674824 GCCAGTTAGATTTGATATTTCTCATTG 57.325 33.333 0.00 0.00 0.00 2.82
383 384 7.577303 AGGCCAGTTAGATTTGATATTTCTCA 58.423 34.615 5.01 0.00 0.00 3.27
384 385 8.457238 AAGGCCAGTTAGATTTGATATTTCTC 57.543 34.615 5.01 0.00 0.00 2.87
389 390 8.001292 AGCTAAAAGGCCAGTTAGATTTGATAT 58.999 33.333 23.00 0.00 30.27 1.63
392 393 5.570320 AGCTAAAAGGCCAGTTAGATTTGA 58.430 37.500 23.00 0.00 30.27 2.69
393 394 5.904362 AGCTAAAAGGCCAGTTAGATTTG 57.096 39.130 23.00 4.21 30.27 2.32
394 395 6.249192 AGAAGCTAAAAGGCCAGTTAGATTT 58.751 36.000 22.42 16.85 36.39 2.17
397 398 4.286032 TGAGAAGCTAAAAGGCCAGTTAGA 59.714 41.667 23.00 4.57 30.27 2.10
398 399 4.579869 TGAGAAGCTAAAAGGCCAGTTAG 58.420 43.478 17.17 17.17 0.00 2.34
399 400 4.634012 TGAGAAGCTAAAAGGCCAGTTA 57.366 40.909 5.01 1.21 0.00 2.24
402 403 4.574013 CACTATGAGAAGCTAAAAGGCCAG 59.426 45.833 5.01 0.00 0.00 4.85
405 406 6.934048 AATCACTATGAGAAGCTAAAAGGC 57.066 37.500 0.00 0.00 0.00 4.35
409 410 9.261180 CGGAAATAATCACTATGAGAAGCTAAA 57.739 33.333 0.00 0.00 0.00 1.85
410 411 8.421784 ACGGAAATAATCACTATGAGAAGCTAA 58.578 33.333 0.00 0.00 0.00 3.09
411 412 7.952671 ACGGAAATAATCACTATGAGAAGCTA 58.047 34.615 0.00 0.00 0.00 3.32
412 413 6.821388 ACGGAAATAATCACTATGAGAAGCT 58.179 36.000 0.00 0.00 0.00 3.74
413 414 7.484035 AACGGAAATAATCACTATGAGAAGC 57.516 36.000 0.00 0.00 0.00 3.86
414 415 9.967346 TCTAACGGAAATAATCACTATGAGAAG 57.033 33.333 0.00 0.00 0.00 2.85
415 416 9.967346 CTCTAACGGAAATAATCACTATGAGAA 57.033 33.333 0.00 0.00 0.00 2.87
416 417 9.350951 TCTCTAACGGAAATAATCACTATGAGA 57.649 33.333 0.00 0.00 0.00 3.27
417 418 9.619316 CTCTCTAACGGAAATAATCACTATGAG 57.381 37.037 0.00 0.00 0.00 2.90
419 420 7.867909 TGCTCTCTAACGGAAATAATCACTATG 59.132 37.037 0.00 0.00 0.00 2.23
421 422 7.342769 TGCTCTCTAACGGAAATAATCACTA 57.657 36.000 0.00 0.00 0.00 2.74
423 424 7.348201 CAATGCTCTCTAACGGAAATAATCAC 58.652 38.462 0.00 0.00 0.00 3.06
424 425 6.017934 GCAATGCTCTCTAACGGAAATAATCA 60.018 38.462 0.00 0.00 0.00 2.57
425 426 6.017934 TGCAATGCTCTCTAACGGAAATAATC 60.018 38.462 6.82 0.00 0.00 1.75
426 427 5.822519 TGCAATGCTCTCTAACGGAAATAAT 59.177 36.000 6.82 0.00 0.00 1.28
427 428 5.182487 TGCAATGCTCTCTAACGGAAATAA 58.818 37.500 6.82 0.00 0.00 1.40
428 429 4.765273 TGCAATGCTCTCTAACGGAAATA 58.235 39.130 6.82 0.00 0.00 1.40
429 430 3.609853 TGCAATGCTCTCTAACGGAAAT 58.390 40.909 6.82 0.00 0.00 2.17
431 432 2.760634 TGCAATGCTCTCTAACGGAA 57.239 45.000 6.82 0.00 0.00 4.30
432 433 2.621338 CTTGCAATGCTCTCTAACGGA 58.379 47.619 6.82 0.00 0.00 4.69
435 436 3.338249 TGACCTTGCAATGCTCTCTAAC 58.662 45.455 6.82 0.00 0.00 2.34
436 437 3.701205 TGACCTTGCAATGCTCTCTAA 57.299 42.857 6.82 0.00 0.00 2.10
437 438 3.338249 GTTGACCTTGCAATGCTCTCTA 58.662 45.455 6.82 0.00 0.00 2.43
438 439 2.157738 GTTGACCTTGCAATGCTCTCT 58.842 47.619 6.82 0.00 0.00 3.10
439 440 1.200948 GGTTGACCTTGCAATGCTCTC 59.799 52.381 6.82 0.00 0.00 3.20
441 442 1.251251 AGGTTGACCTTGCAATGCTC 58.749 50.000 6.82 0.00 46.09 4.26
442 443 3.444850 AGGTTGACCTTGCAATGCT 57.555 47.368 6.82 0.00 46.09 3.79
452 453 4.495844 CGAGAAAACTTGACAAGGTTGACC 60.496 45.833 18.99 11.23 37.47 4.02
453 454 4.588278 CGAGAAAACTTGACAAGGTTGAC 58.412 43.478 18.99 15.23 37.47 3.18
454 455 3.064820 GCGAGAAAACTTGACAAGGTTGA 59.935 43.478 18.99 0.00 37.47 3.18
455 456 3.363178 GCGAGAAAACTTGACAAGGTTG 58.637 45.455 18.99 7.83 37.47 3.77
456 457 2.031683 CGCGAGAAAACTTGACAAGGTT 59.968 45.455 19.16 16.16 41.00 3.50
457 458 1.597663 CGCGAGAAAACTTGACAAGGT 59.402 47.619 19.16 10.30 0.00 3.50
458 459 1.660333 GCGCGAGAAAACTTGACAAGG 60.660 52.381 19.16 0.97 0.00 3.61
459 460 1.003972 TGCGCGAGAAAACTTGACAAG 60.004 47.619 12.10 13.77 0.00 3.16
461 462 0.581529 CTGCGCGAGAAAACTTGACA 59.418 50.000 12.10 0.00 0.00 3.58
464 465 1.003972 TGAACTGCGCGAGAAAACTTG 60.004 47.619 12.10 0.00 0.00 3.16
465 466 1.295792 TGAACTGCGCGAGAAAACTT 58.704 45.000 12.10 0.00 0.00 2.66
466 467 1.461127 GATGAACTGCGCGAGAAAACT 59.539 47.619 12.10 0.00 0.00 2.66
467 468 1.461127 AGATGAACTGCGCGAGAAAAC 59.539 47.619 12.10 0.00 0.00 2.43
468 469 1.460743 CAGATGAACTGCGCGAGAAAA 59.539 47.619 12.10 0.00 39.86 2.29
470 471 2.741930 CAGATGAACTGCGCGAGAA 58.258 52.632 12.10 0.00 39.86 2.87
479 480 2.032620 CTACCTACGGGCAGATGAACT 58.967 52.381 0.00 0.00 35.63 3.01
480 481 1.068741 CCTACCTACGGGCAGATGAAC 59.931 57.143 0.00 0.00 35.63 3.18
484 485 0.822532 CGACCTACCTACGGGCAGAT 60.823 60.000 0.00 0.00 35.63 2.90
486 487 2.487532 CCGACCTACCTACGGGCAG 61.488 68.421 0.00 0.00 42.48 4.85
487 488 2.440796 CCGACCTACCTACGGGCA 60.441 66.667 0.00 0.00 42.48 5.36
491 492 1.012841 GAGTGACCGACCTACCTACG 58.987 60.000 0.00 0.00 0.00 3.51
492 493 1.340405 TGGAGTGACCGACCTACCTAC 60.340 57.143 0.00 0.00 42.61 3.18
493 494 0.994247 TGGAGTGACCGACCTACCTA 59.006 55.000 0.00 0.00 42.61 3.08
495 496 1.946475 GCTGGAGTGACCGACCTACC 61.946 65.000 0.00 0.00 42.61 3.18
496 497 0.966370 AGCTGGAGTGACCGACCTAC 60.966 60.000 0.00 0.00 42.61 3.18
498 499 1.122019 AAAGCTGGAGTGACCGACCT 61.122 55.000 0.00 0.00 42.61 3.85
499 500 0.250338 AAAAGCTGGAGTGACCGACC 60.250 55.000 0.00 0.00 42.61 4.79
501 502 3.695830 ATAAAAAGCTGGAGTGACCGA 57.304 42.857 0.00 0.00 42.61 4.69
502 503 4.003648 AGAATAAAAAGCTGGAGTGACCG 58.996 43.478 0.00 0.00 42.61 4.79
503 504 6.407202 TCTAGAATAAAAAGCTGGAGTGACC 58.593 40.000 0.00 0.00 39.54 4.02
504 505 8.499403 AATCTAGAATAAAAAGCTGGAGTGAC 57.501 34.615 0.00 0.00 0.00 3.67
517 518 9.243105 CAGGGGAACAGAAAAATCTAGAATAAA 57.757 33.333 0.00 0.00 0.00 1.40
519 520 7.036863 ACCAGGGGAACAGAAAAATCTAGAATA 60.037 37.037 0.00 0.00 0.00 1.75
521 522 5.074515 ACCAGGGGAACAGAAAAATCTAGAA 59.925 40.000 0.00 0.00 0.00 2.10
522 523 4.601857 ACCAGGGGAACAGAAAAATCTAGA 59.398 41.667 0.00 0.00 0.00 2.43
523 524 4.923415 ACCAGGGGAACAGAAAAATCTAG 58.077 43.478 0.00 0.00 0.00 2.43
524 525 5.333566 AACCAGGGGAACAGAAAAATCTA 57.666 39.130 0.00 0.00 0.00 1.98
526 527 4.955811 AAACCAGGGGAACAGAAAAATC 57.044 40.909 0.00 0.00 0.00 2.17
527 528 5.711698 TCTAAACCAGGGGAACAGAAAAAT 58.288 37.500 0.00 0.00 0.00 1.82
528 529 5.132043 TCTAAACCAGGGGAACAGAAAAA 57.868 39.130 0.00 0.00 0.00 1.94
529 530 4.799715 TCTAAACCAGGGGAACAGAAAA 57.200 40.909 0.00 0.00 0.00 2.29
530 531 5.333566 AATCTAAACCAGGGGAACAGAAA 57.666 39.130 0.00 0.00 0.00 2.52
531 532 5.163034 TGAAATCTAAACCAGGGGAACAGAA 60.163 40.000 0.00 0.00 0.00 3.02
532 533 4.352595 TGAAATCTAAACCAGGGGAACAGA 59.647 41.667 0.00 0.00 0.00 3.41
533 534 4.459337 GTGAAATCTAAACCAGGGGAACAG 59.541 45.833 0.00 0.00 0.00 3.16
534 535 4.141135 TGTGAAATCTAAACCAGGGGAACA 60.141 41.667 0.00 0.00 0.00 3.18
535 536 4.403734 TGTGAAATCTAAACCAGGGGAAC 58.596 43.478 0.00 0.00 0.00 3.62
536 537 4.733077 TGTGAAATCTAAACCAGGGGAA 57.267 40.909 0.00 0.00 0.00 3.97
537 538 4.946160 ATGTGAAATCTAAACCAGGGGA 57.054 40.909 0.00 0.00 0.00 4.81
538 539 7.660030 AAATATGTGAAATCTAAACCAGGGG 57.340 36.000 0.00 0.00 0.00 4.79
604 605 6.208644 CGGACATTTTTCAAAGTCATGAACT 58.791 36.000 0.00 0.00 38.95 3.01
605 606 5.107875 GCGGACATTTTTCAAAGTCATGAAC 60.108 40.000 0.00 0.00 38.95 3.18
607 608 4.037327 TGCGGACATTTTTCAAAGTCATGA 59.963 37.500 0.00 0.00 33.09 3.07
608 609 4.148696 GTGCGGACATTTTTCAAAGTCATG 59.851 41.667 0.63 0.00 33.09 3.07
610 611 3.129462 TGTGCGGACATTTTTCAAAGTCA 59.871 39.130 5.33 0.00 33.09 3.41
611 612 3.701241 TGTGCGGACATTTTTCAAAGTC 58.299 40.909 5.33 0.00 31.04 3.01
641 642 9.940166 GAACTTTTTCTCAAATGCATGAATTTT 57.060 25.926 9.08 0.00 0.00 1.82
642 643 8.277713 CGAACTTTTTCTCAAATGCATGAATTT 58.722 29.630 5.77 5.77 0.00 1.82
643 644 7.569957 GCGAACTTTTTCTCAAATGCATGAATT 60.570 33.333 0.00 0.00 0.00 2.17
644 645 6.128742 GCGAACTTTTTCTCAAATGCATGAAT 60.129 34.615 0.00 0.00 0.00 2.57
646 647 4.681025 GCGAACTTTTTCTCAAATGCATGA 59.319 37.500 0.00 0.00 0.00 3.07
647 648 4.445052 TGCGAACTTTTTCTCAAATGCATG 59.555 37.500 0.00 0.00 0.00 4.06
648 649 4.619973 TGCGAACTTTTTCTCAAATGCAT 58.380 34.783 0.00 0.00 0.00 3.96
649 650 4.039151 TGCGAACTTTTTCTCAAATGCA 57.961 36.364 0.00 0.00 0.00 3.96
650 651 5.175491 TCATTGCGAACTTTTTCTCAAATGC 59.825 36.000 0.00 0.00 39.33 3.56
651 652 6.752335 TCATTGCGAACTTTTTCTCAAATG 57.248 33.333 0.00 0.00 39.33 2.32
652 653 7.147312 TCATCATTGCGAACTTTTTCTCAAAT 58.853 30.769 0.00 0.00 39.33 2.32
654 655 6.070897 TCATCATTGCGAACTTTTTCTCAA 57.929 33.333 0.00 0.00 39.99 3.02
655 656 5.687770 TCATCATTGCGAACTTTTTCTCA 57.312 34.783 0.00 0.00 0.00 3.27
656 657 6.991485 TTTCATCATTGCGAACTTTTTCTC 57.009 33.333 0.00 0.00 0.00 2.87
657 658 7.769272 TTTTTCATCATTGCGAACTTTTTCT 57.231 28.000 0.00 0.00 0.00 2.52
678 679 6.317391 TGCTTTTTCAAATCCGTGGAATTTTT 59.683 30.769 0.00 0.00 0.00 1.94
679 680 5.819901 TGCTTTTTCAAATCCGTGGAATTTT 59.180 32.000 0.00 0.00 0.00 1.82
680 681 5.363939 TGCTTTTTCAAATCCGTGGAATTT 58.636 33.333 0.00 0.00 0.00 1.82
681 682 4.954875 TGCTTTTTCAAATCCGTGGAATT 58.045 34.783 0.00 0.00 0.00 2.17
682 683 4.599047 TGCTTTTTCAAATCCGTGGAAT 57.401 36.364 0.00 0.00 0.00 3.01
760 762 7.663827 TCAAAGCTGTGATCATTTTCAAATCT 58.336 30.769 1.21 0.00 0.00 2.40
761 763 7.878477 TCAAAGCTGTGATCATTTTCAAATC 57.122 32.000 1.21 0.00 0.00 2.17
804 806 6.154203 TCCACACAATGCATGAACTTTTTA 57.846 33.333 0.00 0.00 0.00 1.52
827 829 7.693969 TCAAACCCACAAACATTTTTCAAAT 57.306 28.000 0.00 0.00 0.00 2.32
1017 1031 6.954616 TTTTTCCGGAAAGTTTTTGTTCTC 57.045 33.333 27.48 0.00 0.00 2.87
1042 1056 2.269241 GCCGGTTTCTCTCTGGGG 59.731 66.667 1.90 0.00 32.41 4.96
1171 1185 0.872388 CCTAACAACGTGCCAACCTC 59.128 55.000 0.00 0.00 0.00 3.85
1184 1198 2.166459 CTCTCATGTTCTCGGCCTAACA 59.834 50.000 15.00 15.00 39.73 2.41
1228 1242 4.552674 TCAAGGGGCCTACTTTTTCTTTT 58.447 39.130 0.84 0.00 0.00 2.27
1285 1299 4.459685 ACAGTAATTGTCAGAGCGTCTAGT 59.540 41.667 0.00 0.00 33.87 2.57
1286 1300 4.987832 ACAGTAATTGTCAGAGCGTCTAG 58.012 43.478 0.00 0.00 33.87 2.43
1401 1460 2.612972 GCCTGACGAAGATCAAGGACAA 60.613 50.000 0.00 0.00 0.00 3.18
1403 1462 1.205893 AGCCTGACGAAGATCAAGGAC 59.794 52.381 0.00 0.00 0.00 3.85
1538 1597 0.539986 GGACACCATCGCCCTTTAGA 59.460 55.000 0.00 0.00 0.00 2.10
1552 1611 1.016130 CGCCATCTGACACAGGACAC 61.016 60.000 0.00 0.00 31.51 3.67
1560 1619 1.078918 CTGCCTTCGCCATCTGACA 60.079 57.895 0.00 0.00 0.00 3.58
1764 1825 3.915437 ATTTGTTGTCGGGTTAAGCAG 57.085 42.857 7.03 2.37 0.00 4.24
1791 1852 9.822185 AAAACTGAATCTGATTTAGCAAAAACT 57.178 25.926 18.75 0.00 29.71 2.66
1951 15568 3.053320 AGGCCAAGCTAGCTTAAAGGAAT 60.053 43.478 28.87 14.82 34.50 3.01
2471 16128 5.424121 ACAATAGCAAAGACACTTGACAC 57.576 39.130 0.00 0.00 0.00 3.67
2726 16415 4.870426 GGATTTCAAGAACACGAGCATCTA 59.130 41.667 0.00 0.00 0.00 1.98
2752 16441 9.742144 TGGTGGAGAGACTATAGTTCTATATTC 57.258 37.037 6.88 8.29 0.00 1.75
2781 16471 4.219725 GCTATCCCACTAGAGTTGGATCTC 59.780 50.000 16.43 8.00 44.45 2.75
3012 16712 6.719370 AGTTGGCAGAAGTTTATTTGGTATGA 59.281 34.615 0.00 0.00 0.00 2.15
3133 16836 8.144478 TGCTTCAAAGATATCATACTCTGGTAC 58.856 37.037 5.32 0.00 0.00 3.34
3345 17051 9.665264 GAATTTACTGGTTTGAAAGTCAACTAG 57.335 33.333 0.00 0.00 35.89 2.57
3400 17109 3.665323 GCACAACAAGAGCAACTATCACG 60.665 47.826 0.00 0.00 33.66 4.35
3419 17128 6.427853 TGATACACTTATTATCATGCCTGCAC 59.572 38.462 0.00 0.00 32.17 4.57
3487 17196 6.131264 TGGACATCTGAATTTGCCTATTGAT 58.869 36.000 0.00 0.00 0.00 2.57
3496 17205 5.515797 AGCATGATGGACATCTGAATTTG 57.484 39.130 12.97 3.75 38.60 2.32
3500 17209 5.556006 TCATAGCATGATGGACATCTGAA 57.444 39.130 12.97 0.00 38.60 3.02
3513 17222 5.067954 TCCTGGTGAATGAATCATAGCATG 58.932 41.667 0.00 0.00 40.97 4.06
3514 17223 5.314718 TCCTGGTGAATGAATCATAGCAT 57.685 39.130 0.00 0.00 40.97 3.79
3518 17227 7.952368 TCTAGAGATCCTGGTGAATGAATCATA 59.048 37.037 0.00 0.00 40.97 2.15
3529 17238 5.867903 ATGAACTTCTAGAGATCCTGGTG 57.132 43.478 0.00 0.00 0.00 4.17
3551 17260 9.854668 TCCCCTATCGTAATTGAATTTGATTAA 57.145 29.630 9.57 0.00 0.00 1.40
3552 17261 9.854668 TTCCCCTATCGTAATTGAATTTGATTA 57.145 29.630 9.57 0.00 0.00 1.75
3553 17262 8.760980 TTCCCCTATCGTAATTGAATTTGATT 57.239 30.769 9.57 0.00 0.00 2.57
3555 17264 7.832187 AGTTTCCCCTATCGTAATTGAATTTGA 59.168 33.333 0.00 0.00 0.00 2.69
3556 17265 7.996385 AGTTTCCCCTATCGTAATTGAATTTG 58.004 34.615 0.00 0.00 0.00 2.32
3558 17267 9.862149 ATTAGTTTCCCCTATCGTAATTGAATT 57.138 29.630 0.00 0.00 0.00 2.17
3560 17269 8.269317 ACATTAGTTTCCCCTATCGTAATTGAA 58.731 33.333 0.00 0.00 0.00 2.69
3562 17271 9.550406 TTACATTAGTTTCCCCTATCGTAATTG 57.450 33.333 0.00 0.00 0.00 2.32
3563 17272 9.551734 GTTACATTAGTTTCCCCTATCGTAATT 57.448 33.333 0.00 0.00 0.00 1.40
3565 17274 7.068103 TCGTTACATTAGTTTCCCCTATCGTAA 59.932 37.037 0.00 0.00 0.00 3.18
3566 17275 6.545666 TCGTTACATTAGTTTCCCCTATCGTA 59.454 38.462 0.00 0.00 0.00 3.43
3567 17276 5.360714 TCGTTACATTAGTTTCCCCTATCGT 59.639 40.000 0.00 0.00 0.00 3.73
3568 17277 5.835257 TCGTTACATTAGTTTCCCCTATCG 58.165 41.667 0.00 0.00 0.00 2.92
3572 17281 8.323567 TCTAAAATCGTTACATTAGTTTCCCCT 58.676 33.333 0.00 0.00 0.00 4.79
3746 17577 2.866762 CAAGGTCCTTCATAGTAAGCGC 59.133 50.000 0.00 0.00 0.00 5.92
3756 17587 7.944554 AGTCTTATTCAAATTCAAGGTCCTTCA 59.055 33.333 0.00 0.00 0.00 3.02
3779 17610 8.617290 TTTAATGAAAAGGAAGGAGTGTAGTC 57.383 34.615 0.00 0.00 0.00 2.59
3802 17633 3.917300 TCAGTAACCAAACCACCCATTT 58.083 40.909 0.00 0.00 0.00 2.32
4032 20539 4.467769 AGGGCAATCTTTCATATGACTGG 58.532 43.478 4.48 0.00 0.00 4.00
4046 20553 7.599998 CCTGCAAACATTAATATTAGGGCAATC 59.400 37.037 0.00 0.00 0.00 2.67
4050 20557 6.040391 TGACCTGCAAACATTAATATTAGGGC 59.960 38.462 0.00 0.00 0.00 5.19
4051 20558 7.425606 GTGACCTGCAAACATTAATATTAGGG 58.574 38.462 0.00 0.00 0.00 3.53
4200 20890 1.798223 CAGCGGTCAATTTTCTCACGA 59.202 47.619 0.00 0.00 0.00 4.35
4315 21005 3.447229 TGAGCGTTGTGATCTTGATCCTA 59.553 43.478 7.99 0.00 32.98 2.94
4330 21020 3.055094 ACTCATTATCCCACTTGAGCGTT 60.055 43.478 0.00 0.00 39.33 4.84
4346 21036 1.100510 TACTAGTCGCGGCACTCATT 58.899 50.000 15.58 0.00 0.00 2.57
4509 21200 4.497291 AGTAAGCCCCACATAAATTCGA 57.503 40.909 0.00 0.00 0.00 3.71
4572 21273 4.137116 TGATACAACGCTAGAGGCAAAT 57.863 40.909 0.00 0.00 41.91 2.32
4654 21355 2.430248 TACGAGTACTGCTCCCATCA 57.570 50.000 0.00 0.00 41.10 3.07
4717 21460 8.190784 AGCCAATAATAAAAATCCAAGAAGACG 58.809 33.333 0.00 0.00 0.00 4.18
4718 21461 9.305925 CAGCCAATAATAAAAATCCAAGAAGAC 57.694 33.333 0.00 0.00 0.00 3.01
4719 21462 7.981225 GCAGCCAATAATAAAAATCCAAGAAGA 59.019 33.333 0.00 0.00 0.00 2.87
4720 21463 7.983484 AGCAGCCAATAATAAAAATCCAAGAAG 59.017 33.333 0.00 0.00 0.00 2.85
4722 21465 7.422465 AGCAGCCAATAATAAAAATCCAAGA 57.578 32.000 0.00 0.00 0.00 3.02
4723 21466 8.196771 TGTAGCAGCCAATAATAAAAATCCAAG 58.803 33.333 0.00 0.00 0.00 3.61
4724 21467 8.072321 TGTAGCAGCCAATAATAAAAATCCAA 57.928 30.769 0.00 0.00 0.00 3.53
4725 21468 7.559533 TCTGTAGCAGCCAATAATAAAAATCCA 59.440 33.333 0.00 0.00 0.00 3.41
4726 21469 7.940850 TCTGTAGCAGCCAATAATAAAAATCC 58.059 34.615 0.00 0.00 0.00 3.01
4727 21470 9.971922 ATTCTGTAGCAGCCAATAATAAAAATC 57.028 29.630 0.00 0.00 0.00 2.17
4728 21471 9.971922 GATTCTGTAGCAGCCAATAATAAAAAT 57.028 29.630 0.00 0.00 0.00 1.82
4729 21472 8.965819 TGATTCTGTAGCAGCCAATAATAAAAA 58.034 29.630 0.00 0.00 0.00 1.94
4731 21474 8.696043 ATGATTCTGTAGCAGCCAATAATAAA 57.304 30.769 0.00 0.00 0.00 1.40
4732 21475 8.159447 AGATGATTCTGTAGCAGCCAATAATAA 58.841 33.333 0.00 0.00 0.00 1.40
4733 21476 7.683578 AGATGATTCTGTAGCAGCCAATAATA 58.316 34.615 0.00 0.00 0.00 0.98
4734 21477 6.540995 AGATGATTCTGTAGCAGCCAATAAT 58.459 36.000 0.00 0.00 0.00 1.28
4737 21480 4.434545 AGATGATTCTGTAGCAGCCAAT 57.565 40.909 0.00 0.00 0.00 3.16
4819 21563 3.415212 TGCAAACAAAGATCTCTCTGGG 58.585 45.455 0.00 0.00 0.00 4.45
4843 21587 4.116747 GGTGGAGTCACTGAAGATACTG 57.883 50.000 0.00 0.00 43.17 2.74
4905 21649 4.202567 TGAAACAAATAGGGCCTCAGACTT 60.203 41.667 10.74 0.00 0.00 3.01
4915 21659 5.989168 GTCCCAAAAGTTGAAACAAATAGGG 59.011 40.000 0.00 0.00 0.00 3.53
4929 21673 4.664688 AGATGAATCTGGTCCCAAAAGT 57.335 40.909 0.00 0.00 35.42 2.66
4982 21726 4.811969 TCGGGCTTCACTATCAAAGTTA 57.188 40.909 0.00 0.00 35.76 2.24
4992 21736 2.514458 AATTGGATTCGGGCTTCACT 57.486 45.000 0.00 0.00 0.00 3.41
4993 21737 3.066760 CCTAAATTGGATTCGGGCTTCAC 59.933 47.826 0.00 0.00 0.00 3.18
4994 21738 3.287222 CCTAAATTGGATTCGGGCTTCA 58.713 45.455 0.00 0.00 0.00 3.02
4995 21739 2.034685 GCCTAAATTGGATTCGGGCTTC 59.965 50.000 0.00 0.00 37.07 3.86
4996 21740 2.031870 GCCTAAATTGGATTCGGGCTT 58.968 47.619 0.00 0.00 37.07 4.35
4997 21741 1.692411 GCCTAAATTGGATTCGGGCT 58.308 50.000 0.00 0.00 37.07 5.19
4998 21742 0.673985 GGCCTAAATTGGATTCGGGC 59.326 55.000 0.00 0.00 38.34 6.13
4999 21743 2.065899 TGGCCTAAATTGGATTCGGG 57.934 50.000 3.32 0.00 0.00 5.14
5000 21744 4.670896 AAATGGCCTAAATTGGATTCGG 57.329 40.909 3.32 0.00 0.00 4.30
5001 21745 5.659463 TGAAAATGGCCTAAATTGGATTCG 58.341 37.500 3.32 0.00 0.00 3.34
5002 21746 6.536224 CACTGAAAATGGCCTAAATTGGATTC 59.464 38.462 3.32 0.00 0.00 2.52
5003 21747 6.013466 ACACTGAAAATGGCCTAAATTGGATT 60.013 34.615 3.32 0.00 0.00 3.01
5004 21748 5.484998 ACACTGAAAATGGCCTAAATTGGAT 59.515 36.000 3.32 0.00 0.00 3.41
5005 21749 4.837860 ACACTGAAAATGGCCTAAATTGGA 59.162 37.500 3.32 0.00 0.00 3.53
5006 21750 5.151297 ACACTGAAAATGGCCTAAATTGG 57.849 39.130 3.32 0.00 0.00 3.16
5007 21751 8.776376 AAATACACTGAAAATGGCCTAAATTG 57.224 30.769 3.32 0.00 0.00 2.32
5008 21752 9.435688 GAAAATACACTGAAAATGGCCTAAATT 57.564 29.630 3.32 0.00 0.00 1.82
5009 21753 8.040727 GGAAAATACACTGAAAATGGCCTAAAT 58.959 33.333 3.32 0.00 0.00 1.40
5010 21754 7.234577 AGGAAAATACACTGAAAATGGCCTAAA 59.765 33.333 3.32 0.00 0.00 1.85
5011 21755 6.723977 AGGAAAATACACTGAAAATGGCCTAA 59.276 34.615 3.32 0.00 0.00 2.69
5012 21756 6.152661 CAGGAAAATACACTGAAAATGGCCTA 59.847 38.462 3.32 0.00 34.21 3.93
5013 21757 5.047092 CAGGAAAATACACTGAAAATGGCCT 60.047 40.000 3.32 0.00 34.21 5.19
5014 21758 5.047377 TCAGGAAAATACACTGAAAATGGCC 60.047 40.000 0.00 0.00 38.22 5.36
5015 21759 6.024552 TCAGGAAAATACACTGAAAATGGC 57.975 37.500 0.00 0.00 38.22 4.40
5016 21760 7.039784 TCCTTCAGGAAAATACACTGAAAATGG 60.040 37.037 7.61 6.09 46.81 3.16
5017 21761 7.885297 TCCTTCAGGAAAATACACTGAAAATG 58.115 34.615 7.61 1.17 46.81 2.32
5105 21881 6.744537 CCTATTTGTTTCAGCTTCGATTTCTG 59.255 38.462 0.00 0.00 0.00 3.02
5149 21925 9.878667 TCGTAATATCAAAGTCCAAATCAGTAA 57.121 29.630 0.00 0.00 0.00 2.24
5150 21926 9.309516 GTCGTAATATCAAAGTCCAAATCAGTA 57.690 33.333 0.00 0.00 0.00 2.74
5151 21927 8.041323 AGTCGTAATATCAAAGTCCAAATCAGT 58.959 33.333 0.00 0.00 0.00 3.41
5152 21928 8.425577 AGTCGTAATATCAAAGTCCAAATCAG 57.574 34.615 0.00 0.00 0.00 2.90
5201 21986 5.622233 GCCAGGAAAATTGGTTACACATCTC 60.622 44.000 0.00 0.00 38.02 2.75
5209 21994 4.594920 TCAAATGGCCAGGAAAATTGGTTA 59.405 37.500 13.05 0.00 38.02 2.85
5216 22001 3.069443 GTCAAGTCAAATGGCCAGGAAAA 59.931 43.478 13.05 0.00 0.00 2.29
5426 22214 3.516981 ACAGTGAATGTGGAGAGATCG 57.483 47.619 0.00 0.00 41.91 3.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.