Multiple sequence alignment - TraesCS5D01G468100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G468100 chr5D 100.000 3356 0 0 1 3356 509591509 509588154 0.000000e+00 6198
1 TraesCS5D01G468100 chr5A 90.722 1843 59 23 1005 2788 637094974 637093185 0.000000e+00 2353
2 TraesCS5D01G468100 chr5A 90.157 762 40 12 260 987 637102579 637101819 0.000000e+00 959
3 TraesCS5D01G468100 chr5A 85.000 500 50 10 2863 3356 637091600 637091120 5.030000e-133 484
4 TraesCS5D01G468100 chr5A 95.455 88 4 0 138 225 637116010 637115923 1.260000e-29 141
5 TraesCS5D01G468100 chr5B 92.390 841 31 13 1001 1834 640427414 640426600 0.000000e+00 1168
6 TraesCS5D01G468100 chr5B 94.530 713 35 2 1821 2532 640425638 640424929 0.000000e+00 1098
7 TraesCS5D01G468100 chr5B 89.610 539 29 14 485 1012 640432657 640432135 0.000000e+00 660
8 TraesCS5D01G468100 chr5B 96.186 236 9 0 138 373 640443320 640443085 1.460000e-103 387
9 TraesCS5D01G468100 chr5B 87.692 195 18 4 2352 2545 640424929 640424740 4.360000e-54 222
10 TraesCS5D01G468100 chr5B 79.743 311 37 16 3050 3345 640420112 640419813 5.680000e-48 202
11 TraesCS5D01G468100 chr5B 95.238 105 5 0 388 492 640433407 640433303 2.070000e-37 167
12 TraesCS5D01G468100 chr6D 94.928 138 6 1 1 138 153111152 153111288 7.290000e-52 215
13 TraesCS5D01G468100 chr2A 94.891 137 6 1 1 137 429579241 429579106 2.620000e-51 213
14 TraesCS5D01G468100 chr2A 94.891 137 6 1 1 137 429649010 429648875 2.620000e-51 213
15 TraesCS5D01G468100 chr2A 91.837 147 10 2 1 147 745753650 745753794 1.580000e-48 204
16 TraesCS5D01G468100 chr7D 94.203 138 8 0 2 139 37579140 37579277 9.430000e-51 211
17 TraesCS5D01G468100 chr7D 94.203 138 8 0 1 138 198847871 198848008 9.430000e-51 211
18 TraesCS5D01G468100 chr7D 94.161 137 8 0 1 137 198845518 198845654 3.390000e-50 209
19 TraesCS5D01G468100 chr7D 92.466 146 8 3 1 144 612882301 612882157 4.390000e-49 206
20 TraesCS5D01G468100 chr1D 90.850 153 12 2 1 153 465001181 465001331 1.580000e-48 204


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G468100 chr5D 509588154 509591509 3355 True 6198.000000 6198 100.000000 1 3356 1 chr5D.!!$R1 3355
1 TraesCS5D01G468100 chr5A 637091120 637094974 3854 True 1418.500000 2353 87.861000 1005 3356 2 chr5A.!!$R3 2351
2 TraesCS5D01G468100 chr5A 637101819 637102579 760 True 959.000000 959 90.157000 260 987 1 chr5A.!!$R1 727
3 TraesCS5D01G468100 chr5B 640424740 640427414 2674 True 829.333333 1168 91.537333 1001 2545 3 chr5B.!!$R3 1544
4 TraesCS5D01G468100 chr5B 640432135 640433407 1272 True 413.500000 660 92.424000 388 1012 2 chr5B.!!$R4 624
5 TraesCS5D01G468100 chr7D 198845518 198848008 2490 False 210.000000 211 94.182000 1 138 2 chr7D.!!$F2 137

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
254 255 0.179086 TCATATGAAGCGCGCTCCAA 60.179 50.0 36.57 22.86 0.0 3.53 F
255 256 0.657312 CATATGAAGCGCGCTCCAAA 59.343 50.0 36.57 20.73 0.0 3.28 F
1750 3527 0.519586 ACGTTTTTGTGTGTGCGTCG 60.520 50.0 0.00 0.00 0.0 5.12 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1587 3364 0.528901 CCGTGGACGTGTTGAAGTGA 60.529 55.0 0.00 0.00 37.74 3.41 R
2106 4892 0.684805 GGACCTCGAGGATGTCACCT 60.685 60.0 37.69 12.94 43.64 4.00 R
2944 7637 0.232303 GACCAGCTTGTCGTCGTTTG 59.768 55.0 1.66 0.00 0.00 2.93 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
46 47 2.656947 TTCTGGCTTGCCTTGTACTT 57.343 45.000 13.18 0.00 0.00 2.24
47 48 2.656947 TCTGGCTTGCCTTGTACTTT 57.343 45.000 13.18 0.00 0.00 2.66
99 100 2.286294 CACGAGGCTCAAGCAATACATC 59.714 50.000 15.95 0.00 44.36 3.06
117 118 3.443681 ACATCGAACAATTCCACCAATCC 59.556 43.478 0.00 0.00 0.00 3.01
124 125 2.513738 CAATTCCACCAATCCCCCTCTA 59.486 50.000 0.00 0.00 0.00 2.43
126 127 2.118403 TCCACCAATCCCCCTCTATC 57.882 55.000 0.00 0.00 0.00 2.08
137 138 3.116707 TCCCCCTCTATCCCTTCTAACAG 60.117 52.174 0.00 0.00 0.00 3.16
138 139 3.375430 CCCCCTCTATCCCTTCTAACAGT 60.375 52.174 0.00 0.00 0.00 3.55
139 140 4.140758 CCCCCTCTATCCCTTCTAACAGTA 60.141 50.000 0.00 0.00 0.00 2.74
140 141 5.081032 CCCCTCTATCCCTTCTAACAGTAG 58.919 50.000 0.00 0.00 0.00 2.57
141 142 5.081032 CCCTCTATCCCTTCTAACAGTAGG 58.919 50.000 0.00 0.00 33.10 3.18
142 143 4.525100 CCTCTATCCCTTCTAACAGTAGGC 59.475 50.000 0.00 0.00 32.07 3.93
143 144 5.138758 TCTATCCCTTCTAACAGTAGGCA 57.861 43.478 0.00 0.00 32.07 4.75
144 145 5.525484 TCTATCCCTTCTAACAGTAGGCAA 58.475 41.667 0.00 0.00 32.07 4.52
145 146 6.143915 TCTATCCCTTCTAACAGTAGGCAAT 58.856 40.000 0.00 0.00 32.07 3.56
146 147 4.487714 TCCCTTCTAACAGTAGGCAATG 57.512 45.455 0.00 0.00 32.07 2.82
147 148 3.844211 TCCCTTCTAACAGTAGGCAATGT 59.156 43.478 0.00 0.00 32.07 2.71
148 149 4.081087 TCCCTTCTAACAGTAGGCAATGTC 60.081 45.833 0.00 0.00 32.07 3.06
149 150 4.323485 CCCTTCTAACAGTAGGCAATGTCA 60.323 45.833 0.00 0.00 32.07 3.58
152 153 6.348540 CCTTCTAACAGTAGGCAATGTCAAAC 60.349 42.308 0.00 0.00 0.00 2.93
153 154 5.616270 TCTAACAGTAGGCAATGTCAAACA 58.384 37.500 0.00 0.00 0.00 2.83
154 155 4.836125 AACAGTAGGCAATGTCAAACAG 57.164 40.909 0.00 0.00 0.00 3.16
156 157 3.149196 CAGTAGGCAATGTCAAACAGGT 58.851 45.455 0.00 0.00 0.00 4.00
157 158 3.189287 CAGTAGGCAATGTCAAACAGGTC 59.811 47.826 0.00 0.00 0.00 3.85
160 161 1.327303 GCAATGTCAAACAGGTCCCA 58.673 50.000 0.00 0.00 0.00 4.37
161 162 1.000274 GCAATGTCAAACAGGTCCCAC 60.000 52.381 0.00 0.00 0.00 4.61
163 164 2.892852 CAATGTCAAACAGGTCCCACAT 59.107 45.455 0.00 0.00 0.00 3.21
164 165 1.979855 TGTCAAACAGGTCCCACATG 58.020 50.000 0.00 0.00 35.77 3.21
166 167 0.184692 TCAAACAGGTCCCACATGCA 59.815 50.000 0.00 0.00 32.34 3.96
167 168 1.039068 CAAACAGGTCCCACATGCAA 58.961 50.000 0.00 0.00 32.34 4.08
168 169 1.000060 CAAACAGGTCCCACATGCAAG 60.000 52.381 0.00 0.00 32.34 4.01
169 170 0.478072 AACAGGTCCCACATGCAAGA 59.522 50.000 0.00 0.00 32.34 3.02
170 171 0.478072 ACAGGTCCCACATGCAAGAA 59.522 50.000 0.00 0.00 32.34 2.52
171 172 1.133513 ACAGGTCCCACATGCAAGAAA 60.134 47.619 0.00 0.00 32.34 2.52
172 173 1.962807 CAGGTCCCACATGCAAGAAAA 59.037 47.619 0.00 0.00 0.00 2.29
173 174 2.364970 CAGGTCCCACATGCAAGAAAAA 59.635 45.455 0.00 0.00 0.00 1.94
174 175 3.007182 CAGGTCCCACATGCAAGAAAAAT 59.993 43.478 0.00 0.00 0.00 1.82
175 176 4.220382 CAGGTCCCACATGCAAGAAAAATA 59.780 41.667 0.00 0.00 0.00 1.40
176 177 4.837860 AGGTCCCACATGCAAGAAAAATAA 59.162 37.500 0.00 0.00 0.00 1.40
177 178 5.484998 AGGTCCCACATGCAAGAAAAATAAT 59.515 36.000 0.00 0.00 0.00 1.28
178 179 6.667414 AGGTCCCACATGCAAGAAAAATAATA 59.333 34.615 0.00 0.00 0.00 0.98
179 180 7.345392 AGGTCCCACATGCAAGAAAAATAATAT 59.655 33.333 0.00 0.00 0.00 1.28
180 181 8.637986 GGTCCCACATGCAAGAAAAATAATATA 58.362 33.333 0.00 0.00 0.00 0.86
186 187 9.546428 ACATGCAAGAAAAATAATATAAAGGCC 57.454 29.630 0.00 0.00 0.00 5.19
187 188 9.545105 CATGCAAGAAAAATAATATAAAGGCCA 57.455 29.630 5.01 0.00 0.00 5.36
189 190 7.704472 TGCAAGAAAAATAATATAAAGGCCACG 59.296 33.333 5.01 0.00 0.00 4.94
190 191 7.704899 GCAAGAAAAATAATATAAAGGCCACGT 59.295 33.333 5.01 0.00 0.00 4.49
191 192 9.581099 CAAGAAAAATAATATAAAGGCCACGTT 57.419 29.630 5.01 0.00 0.00 3.99
206 207 2.418628 CCACGTTTTGGCGAATCTATGT 59.581 45.455 0.00 0.00 39.07 2.29
207 208 3.119990 CCACGTTTTGGCGAATCTATGTT 60.120 43.478 0.00 0.00 39.07 2.71
208 209 4.088648 CACGTTTTGGCGAATCTATGTTC 58.911 43.478 0.00 0.00 35.59 3.18
216 217 3.206271 CGAATCTATGTTCGCACGTTC 57.794 47.619 0.00 0.00 43.56 3.95
219 220 0.892755 TCTATGTTCGCACGTTCCCT 59.107 50.000 0.00 0.00 0.00 4.20
220 221 1.135199 TCTATGTTCGCACGTTCCCTC 60.135 52.381 0.00 0.00 0.00 4.30
224 225 2.847754 TTCGCACGTTCCCTCGACA 61.848 57.895 0.00 0.00 34.70 4.35
225 226 2.352704 TTCGCACGTTCCCTCGACAA 62.353 55.000 0.00 0.00 34.70 3.18
228 229 1.366366 CACGTTCCCTCGACAACCT 59.634 57.895 0.00 0.00 34.70 3.50
230 231 1.080025 CGTTCCCTCGACAACCTCC 60.080 63.158 0.00 0.00 0.00 4.30
231 232 1.812686 CGTTCCCTCGACAACCTCCA 61.813 60.000 0.00 0.00 0.00 3.86
232 233 0.613777 GTTCCCTCGACAACCTCCAT 59.386 55.000 0.00 0.00 0.00 3.41
233 234 1.829222 GTTCCCTCGACAACCTCCATA 59.171 52.381 0.00 0.00 0.00 2.74
234 235 1.481871 TCCCTCGACAACCTCCATAC 58.518 55.000 0.00 0.00 0.00 2.39
235 236 1.006758 TCCCTCGACAACCTCCATACT 59.993 52.381 0.00 0.00 0.00 2.12
237 238 2.100197 CCTCGACAACCTCCATACTCA 58.900 52.381 0.00 0.00 0.00 3.41
238 239 2.695666 CCTCGACAACCTCCATACTCAT 59.304 50.000 0.00 0.00 0.00 2.90
239 240 3.889538 CCTCGACAACCTCCATACTCATA 59.110 47.826 0.00 0.00 0.00 2.15
240 241 4.524714 CCTCGACAACCTCCATACTCATAT 59.475 45.833 0.00 0.00 0.00 1.78
241 242 5.453567 TCGACAACCTCCATACTCATATG 57.546 43.478 0.00 0.00 38.38 1.78
242 243 5.137551 TCGACAACCTCCATACTCATATGA 58.862 41.667 5.07 5.07 40.75 2.15
243 244 5.596772 TCGACAACCTCCATACTCATATGAA 59.403 40.000 6.90 0.00 40.75 2.57
244 245 5.923114 CGACAACCTCCATACTCATATGAAG 59.077 44.000 6.90 3.98 40.75 3.02
246 247 4.527509 ACCTCCATACTCATATGAAGCG 57.472 45.455 6.90 0.00 40.75 4.68
247 248 3.257393 CCTCCATACTCATATGAAGCGC 58.743 50.000 6.90 0.00 40.75 5.92
248 249 2.919859 CTCCATACTCATATGAAGCGCG 59.080 50.000 6.90 0.00 40.75 6.86
249 250 1.391485 CCATACTCATATGAAGCGCGC 59.609 52.381 26.66 26.66 40.75 6.86
250 251 2.332104 CATACTCATATGAAGCGCGCT 58.668 47.619 31.32 31.32 40.75 5.92
252 253 0.598680 ACTCATATGAAGCGCGCTCC 60.599 55.000 36.57 25.39 0.00 4.70
254 255 0.179086 TCATATGAAGCGCGCTCCAA 60.179 50.000 36.57 22.86 0.00 3.53
255 256 0.657312 CATATGAAGCGCGCTCCAAA 59.343 50.000 36.57 20.73 0.00 3.28
256 257 1.265095 CATATGAAGCGCGCTCCAAAT 59.735 47.619 36.57 25.10 0.00 2.32
257 258 0.657312 TATGAAGCGCGCTCCAAATG 59.343 50.000 36.57 0.00 0.00 2.32
258 259 2.577911 GAAGCGCGCTCCAAATGC 60.578 61.111 36.57 13.67 0.00 3.56
322 323 0.987294 AATATCTCCATCCCGGGCAG 59.013 55.000 18.49 10.69 34.36 4.85
343 344 3.132289 AGCAATTTTCCTGCATGGATCAG 59.868 43.478 5.83 0.00 45.68 2.90
372 373 7.663043 ACCAAGGACATTAACCTGTTTAAAA 57.337 32.000 0.00 0.00 37.85 1.52
412 415 2.002018 AAGGTCAAAACTGGGGCCGA 62.002 55.000 0.00 0.00 0.00 5.54
469 491 1.080230 CTCTCACCACTCACCAGCG 60.080 63.158 0.00 0.00 0.00 5.18
720 1416 4.083565 TGGATTAAGCCAACTAACCAACC 58.916 43.478 10.72 0.00 34.31 3.77
759 1455 6.671614 TGTTCTTAAAACGTGATCTTGTGT 57.328 33.333 0.00 0.00 0.00 3.72
783 1479 2.042464 GAGTAGTGGATGATGGAGCCA 58.958 52.381 0.00 0.00 38.00 4.75
837 1537 6.881065 GCTCTGCATGGATATTTCCTATTACA 59.119 38.462 3.72 0.00 43.07 2.41
838 1538 7.148340 GCTCTGCATGGATATTTCCTATTACAC 60.148 40.741 3.72 0.00 43.07 2.90
840 1540 5.937540 TGCATGGATATTTCCTATTACACCG 59.062 40.000 3.72 0.00 43.07 4.94
842 1542 7.101054 GCATGGATATTTCCTATTACACCGTA 58.899 38.462 3.72 0.00 43.07 4.02
843 1543 7.064253 GCATGGATATTTCCTATTACACCGTAC 59.936 40.741 3.72 0.00 43.07 3.67
864 1568 3.573967 ACTACAATCCACCAAAGGCAAAG 59.426 43.478 0.00 0.00 0.00 2.77
905 1610 3.572604 ACTCGTGCCTAACTTACTGTC 57.427 47.619 0.00 0.00 0.00 3.51
926 1631 3.004629 TCATTCACATTTCACAGCCACAC 59.995 43.478 0.00 0.00 0.00 3.82
1287 3034 8.712285 AATTAATCCATCAATTTCTTGTGCAG 57.288 30.769 0.00 0.00 33.87 4.41
1334 3081 9.842775 AGAGCTTCATGTAATTCATCATTAAGA 57.157 29.630 12.27 0.00 34.09 2.10
1389 3136 6.876789 ACACTGACCATTACATCGTCAAAATA 59.123 34.615 0.00 0.00 36.16 1.40
1391 3138 9.040939 CACTGACCATTACATCGTCAAAATATA 57.959 33.333 0.00 0.00 36.16 0.86
1435 3212 5.637810 TCATCGACAAATTGTTACTCCTGAC 59.362 40.000 0.00 0.00 0.00 3.51
1439 3216 7.156000 TCGACAAATTGTTACTCCTGACAATA 58.844 34.615 0.00 0.00 43.58 1.90
1440 3217 7.822334 TCGACAAATTGTTACTCCTGACAATAT 59.178 33.333 0.00 0.00 43.58 1.28
1441 3218 8.450964 CGACAAATTGTTACTCCTGACAATATT 58.549 33.333 0.00 0.00 43.58 1.28
1524 3301 1.270305 CGAGAGTTCTTCAGGTTGCCA 60.270 52.381 0.00 0.00 0.00 4.92
1750 3527 0.519586 ACGTTTTTGTGTGTGCGTCG 60.520 50.000 0.00 0.00 0.00 5.12
1751 3528 0.519586 CGTTTTTGTGTGTGCGTCGT 60.520 50.000 0.00 0.00 0.00 4.34
1752 3529 1.176838 GTTTTTGTGTGTGCGTCGTC 58.823 50.000 0.00 0.00 0.00 4.20
1890 4676 1.339151 GGGATCAAACCAGAGACGCTT 60.339 52.381 0.00 0.00 0.00 4.68
2106 4892 0.962356 GGTCCCTGACCGTCTTCGTA 60.962 60.000 0.00 0.00 43.14 3.43
2357 5502 4.095036 TGTCGATAGCCTCAAGATATAGCG 59.905 45.833 0.00 0.00 0.00 4.26
2432 5580 4.323477 CCGGGCCGAAGAACCACA 62.323 66.667 30.79 0.00 0.00 4.17
2482 5630 6.872547 TGCATCTATTTTGCTTGCATGTTTAA 59.127 30.769 1.14 0.00 40.77 1.52
2494 5642 7.760794 TGCTTGCATGTTTAATAATTCTTCTGG 59.239 33.333 1.14 0.00 0.00 3.86
2507 5655 6.530019 AATTCTTCTGGTTTCAGTTGTGTT 57.470 33.333 0.00 0.00 41.59 3.32
2520 5668 8.500773 GTTTCAGTTGTGTTCCGAAGATTATTA 58.499 33.333 0.00 0.00 0.00 0.98
2532 5680 7.995289 TCCGAAGATTATTATTTGTGCATGTT 58.005 30.769 0.00 0.00 0.00 2.71
2533 5681 7.914871 TCCGAAGATTATTATTTGTGCATGTTG 59.085 33.333 0.00 0.00 0.00 3.33
2534 5682 7.701924 CCGAAGATTATTATTTGTGCATGTTGT 59.298 33.333 0.00 0.00 0.00 3.32
2535 5683 9.075519 CGAAGATTATTATTTGTGCATGTTGTT 57.924 29.630 0.00 0.00 0.00 2.83
2537 5685 9.709495 AAGATTATTATTTGTGCATGTTGTTGT 57.291 25.926 0.00 0.00 0.00 3.32
2538 5686 9.709495 AGATTATTATTTGTGCATGTTGTTGTT 57.291 25.926 0.00 0.00 0.00 2.83
2540 5688 5.879948 TTATTTGTGCATGTTGTTGTTCG 57.120 34.783 0.00 0.00 0.00 3.95
2541 5689 1.554392 TTGTGCATGTTGTTGTTCGC 58.446 45.000 0.00 0.00 0.00 4.70
2542 5690 0.737804 TGTGCATGTTGTTGTTCGCT 59.262 45.000 0.00 0.00 0.00 4.93
2543 5691 1.943340 TGTGCATGTTGTTGTTCGCTA 59.057 42.857 0.00 0.00 0.00 4.26
2544 5692 2.286713 TGTGCATGTTGTTGTTCGCTAC 60.287 45.455 0.00 0.00 0.00 3.58
2545 5693 1.070242 TGCATGTTGTTGTTCGCTACG 60.070 47.619 0.00 0.00 0.00 3.51
2546 5694 1.724654 GCATGTTGTTGTTCGCTACGG 60.725 52.381 0.00 0.00 0.00 4.02
2547 5695 1.529438 CATGTTGTTGTTCGCTACGGT 59.471 47.619 0.00 0.00 0.00 4.83
2548 5696 0.931702 TGTTGTTGTTCGCTACGGTG 59.068 50.000 0.00 0.00 0.00 4.94
2549 5697 1.210870 GTTGTTGTTCGCTACGGTGA 58.789 50.000 0.00 0.00 0.00 4.02
2550 5698 1.796459 GTTGTTGTTCGCTACGGTGAT 59.204 47.619 0.00 0.00 0.00 3.06
2551 5699 1.424403 TGTTGTTCGCTACGGTGATG 58.576 50.000 0.00 0.00 0.00 3.07
2552 5700 1.000052 TGTTGTTCGCTACGGTGATGA 60.000 47.619 0.00 0.00 0.00 2.92
2553 5701 1.389106 GTTGTTCGCTACGGTGATGAC 59.611 52.381 0.00 0.00 0.00 3.06
2663 5811 0.906066 TGTTCAGGCCAGGCGTATTA 59.094 50.000 6.25 0.00 0.00 0.98
2712 5860 4.556699 GCAGGGACTATTTCAAACACACAC 60.557 45.833 0.00 0.00 36.02 3.82
2725 5873 7.566760 TCAAACACACACAAAAGATGAGTAT 57.433 32.000 0.00 0.00 31.17 2.12
2735 5883 9.787435 ACACAAAAGATGAGTATAAGGTTACAA 57.213 29.630 0.00 0.00 30.51 2.41
2753 5901 8.822805 AGGTTACAAAAGGAAGTATATCTGTCA 58.177 33.333 0.00 0.00 0.00 3.58
2775 5923 8.816144 TGTCAAAAATACAATTCAGTTTGAAGC 58.184 29.630 0.00 0.00 40.05 3.86
2779 5927 7.713764 AAATACAATTCAGTTTGAAGCCAAC 57.286 32.000 0.00 0.00 40.05 3.77
2788 5936 6.093771 TTCAGTTTGAAGCCAACGTAGTTTTA 59.906 34.615 0.00 0.00 39.36 1.52
2789 5937 7.887833 TTCAGTTTGAAGCCAACGTAGTTTTAC 60.888 37.037 0.00 0.00 39.36 2.01
2871 7564 4.729868 ACCCAATTTCTACAAGCACTCTT 58.270 39.130 0.00 0.00 0.00 2.85
2922 7615 1.068055 GCCTATATGTCACCCGTACCG 60.068 57.143 0.00 0.00 0.00 4.02
2926 7619 4.021719 CCTATATGTCACCCGTACCGATTT 60.022 45.833 0.00 0.00 0.00 2.17
2938 7631 6.204108 ACCCGTACCGATTTCAAATATGAATC 59.796 38.462 0.00 0.00 44.70 2.52
2942 7635 4.578516 ACCGATTTCAAATATGAATCGCCA 59.421 37.500 11.06 0.00 44.70 5.69
2944 7637 5.399301 CCGATTTCAAATATGAATCGCCAAC 59.601 40.000 11.06 0.00 44.70 3.77
2945 7638 5.970612 CGATTTCAAATATGAATCGCCAACA 59.029 36.000 5.00 0.00 44.70 3.33
2951 7644 2.611974 ATGAATCGCCAACAAACGAC 57.388 45.000 0.00 0.00 41.76 4.34
2955 7648 0.876777 ATCGCCAACAAACGACGACA 60.877 50.000 0.00 0.00 41.76 4.35
2959 7652 0.655733 CCAACAAACGACGACAAGCT 59.344 50.000 0.00 0.00 0.00 3.74
2999 7692 5.220662 CGGATTTGTTGCGAGATGTAGATTT 60.221 40.000 0.00 0.00 42.53 2.17
3004 7697 4.994217 TGTTGCGAGATGTAGATTTGTTCA 59.006 37.500 0.00 0.00 0.00 3.18
3005 7698 5.120674 TGTTGCGAGATGTAGATTTGTTCAG 59.879 40.000 0.00 0.00 0.00 3.02
3006 7699 3.618594 TGCGAGATGTAGATTTGTTCAGC 59.381 43.478 0.00 0.00 0.00 4.26
3007 7700 3.868077 GCGAGATGTAGATTTGTTCAGCT 59.132 43.478 0.00 0.00 0.00 4.24
3008 7701 4.026145 GCGAGATGTAGATTTGTTCAGCTC 60.026 45.833 0.00 0.00 39.12 4.09
3009 7702 4.505922 CGAGATGTAGATTTGTTCAGCTCC 59.494 45.833 0.00 0.00 39.26 4.70
3010 7703 5.669477 GAGATGTAGATTTGTTCAGCTCCT 58.331 41.667 0.00 0.00 37.36 3.69
3011 7704 5.426504 AGATGTAGATTTGTTCAGCTCCTG 58.573 41.667 0.00 0.00 0.00 3.86
3012 7705 4.623932 TGTAGATTTGTTCAGCTCCTGT 57.376 40.909 0.00 0.00 32.61 4.00
3013 7706 4.973168 TGTAGATTTGTTCAGCTCCTGTT 58.027 39.130 0.00 0.00 32.61 3.16
3014 7707 5.376625 TGTAGATTTGTTCAGCTCCTGTTT 58.623 37.500 0.00 0.00 32.61 2.83
3015 7708 5.827797 TGTAGATTTGTTCAGCTCCTGTTTT 59.172 36.000 0.00 0.00 32.61 2.43
3016 7709 5.444663 AGATTTGTTCAGCTCCTGTTTTC 57.555 39.130 0.00 0.00 32.61 2.29
3017 7710 5.136105 AGATTTGTTCAGCTCCTGTTTTCT 58.864 37.500 0.00 0.00 32.61 2.52
3018 7711 6.299141 AGATTTGTTCAGCTCCTGTTTTCTA 58.701 36.000 0.00 0.00 32.61 2.10
3019 7712 6.944862 AGATTTGTTCAGCTCCTGTTTTCTAT 59.055 34.615 0.00 0.00 32.61 1.98
3020 7713 6.560253 TTTGTTCAGCTCCTGTTTTCTATC 57.440 37.500 0.00 0.00 32.61 2.08
3021 7714 5.227569 TGTTCAGCTCCTGTTTTCTATCA 57.772 39.130 0.00 0.00 32.61 2.15
3022 7715 5.620206 TGTTCAGCTCCTGTTTTCTATCAA 58.380 37.500 0.00 0.00 32.61 2.57
3023 7716 5.470098 TGTTCAGCTCCTGTTTTCTATCAAC 59.530 40.000 0.00 0.00 32.61 3.18
3024 7717 5.489792 TCAGCTCCTGTTTTCTATCAACT 57.510 39.130 0.00 0.00 32.61 3.16
3025 7718 5.482908 TCAGCTCCTGTTTTCTATCAACTC 58.517 41.667 0.00 0.00 32.61 3.01
3026 7719 5.012046 TCAGCTCCTGTTTTCTATCAACTCA 59.988 40.000 0.00 0.00 32.61 3.41
3027 7720 5.702670 CAGCTCCTGTTTTCTATCAACTCAA 59.297 40.000 0.00 0.00 0.00 3.02
3028 7721 6.205464 CAGCTCCTGTTTTCTATCAACTCAAA 59.795 38.462 0.00 0.00 0.00 2.69
3029 7722 6.772716 AGCTCCTGTTTTCTATCAACTCAAAA 59.227 34.615 0.00 0.00 0.00 2.44
3030 7723 7.285401 AGCTCCTGTTTTCTATCAACTCAAAAA 59.715 33.333 0.00 0.00 0.00 1.94
3090 7793 4.370364 TGTTTTCTCACCAGTTTTCTGC 57.630 40.909 0.00 0.00 45.76 4.26
3097 7800 3.280295 TCACCAGTTTTCTGCGGTTTTA 58.720 40.909 0.00 0.00 45.76 1.52
3101 7806 5.522097 CACCAGTTTTCTGCGGTTTTATTTT 59.478 36.000 0.00 0.00 45.76 1.82
3127 7832 7.610580 TTCCATTTCCTTTGGTTTTATCTGT 57.389 32.000 0.00 0.00 35.64 3.41
3307 8023 7.341445 ACAAGGTAAATTTTTAGAGCACACA 57.659 32.000 0.00 0.00 0.00 3.72
3316 8032 5.710513 TTTTAGAGCACACATGAAGCATT 57.289 34.783 0.00 0.00 0.00 3.56
3346 8062 9.083422 TGTTGGTCATTTTTCAAATACCTGATA 57.917 29.630 0.00 0.00 0.00 2.15
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 7.510407 AGCCAGAATATTTTCTAGTCTAACCC 58.490 38.462 0.00 0.00 40.28 4.11
21 22 5.716703 AGTACAAGGCAAGCCAGAATATTTT 59.283 36.000 14.40 0.00 38.92 1.82
99 100 1.476488 GGGGATTGGTGGAATTGTTCG 59.524 52.381 0.00 0.00 0.00 3.95
117 118 3.930035 ACTGTTAGAAGGGATAGAGGGG 58.070 50.000 0.00 0.00 0.00 4.79
124 125 4.475016 ACATTGCCTACTGTTAGAAGGGAT 59.525 41.667 0.00 0.00 30.17 3.85
126 127 4.192317 GACATTGCCTACTGTTAGAAGGG 58.808 47.826 0.00 0.00 0.00 3.95
137 138 2.488153 GGACCTGTTTGACATTGCCTAC 59.512 50.000 0.00 0.00 0.00 3.18
138 139 2.554344 GGGACCTGTTTGACATTGCCTA 60.554 50.000 0.00 0.00 0.00 3.93
139 140 1.620822 GGACCTGTTTGACATTGCCT 58.379 50.000 0.00 0.00 0.00 4.75
140 141 0.603065 GGGACCTGTTTGACATTGCC 59.397 55.000 0.00 0.00 0.00 4.52
141 142 1.000274 GTGGGACCTGTTTGACATTGC 60.000 52.381 0.00 0.00 0.00 3.56
142 143 2.305928 TGTGGGACCTGTTTGACATTG 58.694 47.619 0.00 0.00 0.00 2.82
143 144 2.746279 TGTGGGACCTGTTTGACATT 57.254 45.000 0.00 0.00 0.00 2.71
144 145 2.517959 CATGTGGGACCTGTTTGACAT 58.482 47.619 0.00 0.00 0.00 3.06
145 146 1.979855 CATGTGGGACCTGTTTGACA 58.020 50.000 0.00 0.00 0.00 3.58
146 147 0.598065 GCATGTGGGACCTGTTTGAC 59.402 55.000 0.00 0.00 0.00 3.18
147 148 0.184692 TGCATGTGGGACCTGTTTGA 59.815 50.000 0.00 0.00 0.00 2.69
148 149 1.000060 CTTGCATGTGGGACCTGTTTG 60.000 52.381 0.00 0.00 0.00 2.93
149 150 1.133513 TCTTGCATGTGGGACCTGTTT 60.134 47.619 0.00 0.00 0.00 2.83
152 153 1.619654 TTTCTTGCATGTGGGACCTG 58.380 50.000 0.00 0.00 0.00 4.00
153 154 2.380064 TTTTCTTGCATGTGGGACCT 57.620 45.000 0.00 0.00 0.00 3.85
154 155 3.683365 ATTTTTCTTGCATGTGGGACC 57.317 42.857 0.00 0.00 0.00 4.46
160 161 9.546428 GGCCTTTATATTATTTTTCTTGCATGT 57.454 29.630 0.00 0.00 0.00 3.21
161 162 9.545105 TGGCCTTTATATTATTTTTCTTGCATG 57.455 29.630 3.32 0.00 0.00 4.06
163 164 7.704472 CGTGGCCTTTATATTATTTTTCTTGCA 59.296 33.333 3.32 0.00 0.00 4.08
164 165 7.704899 ACGTGGCCTTTATATTATTTTTCTTGC 59.295 33.333 3.32 0.00 0.00 4.01
169 170 9.157104 CCAAAACGTGGCCTTTATATTATTTTT 57.843 29.630 3.32 0.00 41.72 1.94
170 171 8.710835 CCAAAACGTGGCCTTTATATTATTTT 57.289 30.769 3.32 0.00 41.72 1.82
186 187 3.740044 ACATAGATTCGCCAAAACGTG 57.260 42.857 0.00 0.00 0.00 4.49
187 188 3.181524 CGAACATAGATTCGCCAAAACGT 60.182 43.478 0.00 0.00 44.37 3.99
198 199 2.093658 AGGGAACGTGCGAACATAGATT 60.094 45.455 0.00 0.00 0.00 2.40
199 200 1.480954 AGGGAACGTGCGAACATAGAT 59.519 47.619 0.00 0.00 0.00 1.98
200 201 0.892755 AGGGAACGTGCGAACATAGA 59.107 50.000 0.00 0.00 0.00 1.98
202 203 0.457166 CGAGGGAACGTGCGAACATA 60.457 55.000 0.00 0.00 0.00 2.29
203 204 1.736645 CGAGGGAACGTGCGAACAT 60.737 57.895 0.00 0.00 0.00 2.71
204 205 2.355363 CGAGGGAACGTGCGAACA 60.355 61.111 0.00 0.00 0.00 3.18
206 207 2.049802 GTCGAGGGAACGTGCGAA 60.050 61.111 0.00 0.00 34.29 4.70
207 208 2.847754 TTGTCGAGGGAACGTGCGA 61.848 57.895 0.00 0.00 34.70 5.10
208 209 2.355363 TTGTCGAGGGAACGTGCG 60.355 61.111 0.00 0.00 34.70 5.34
210 211 0.666577 GAGGTTGTCGAGGGAACGTG 60.667 60.000 0.00 0.00 34.70 4.49
211 212 1.664306 GAGGTTGTCGAGGGAACGT 59.336 57.895 0.00 0.00 34.70 3.99
212 213 1.080025 GGAGGTTGTCGAGGGAACG 60.080 63.158 0.00 0.00 0.00 3.95
213 214 0.613777 ATGGAGGTTGTCGAGGGAAC 59.386 55.000 0.00 0.00 0.00 3.62
214 215 1.829222 GTATGGAGGTTGTCGAGGGAA 59.171 52.381 0.00 0.00 0.00 3.97
215 216 1.006758 AGTATGGAGGTTGTCGAGGGA 59.993 52.381 0.00 0.00 0.00 4.20
216 217 1.409427 GAGTATGGAGGTTGTCGAGGG 59.591 57.143 0.00 0.00 0.00 4.30
219 220 5.137551 TCATATGAGTATGGAGGTTGTCGA 58.862 41.667 0.00 0.00 38.57 4.20
220 221 5.453567 TCATATGAGTATGGAGGTTGTCG 57.546 43.478 0.00 0.00 38.57 4.35
224 225 4.800914 GCGCTTCATATGAGTATGGAGGTT 60.801 45.833 5.39 0.00 42.13 3.50
225 226 3.306364 GCGCTTCATATGAGTATGGAGGT 60.306 47.826 5.39 0.00 42.13 3.85
228 229 2.926586 GCGCGCTTCATATGAGTATGGA 60.927 50.000 26.67 0.00 38.57 3.41
230 231 2.332104 AGCGCGCTTCATATGAGTATG 58.668 47.619 31.32 0.00 39.25 2.39
231 232 2.600731 GAGCGCGCTTCATATGAGTAT 58.399 47.619 36.87 7.90 0.00 2.12
232 233 1.335964 GGAGCGCGCTTCATATGAGTA 60.336 52.381 36.87 0.00 0.00 2.59
233 234 0.598680 GGAGCGCGCTTCATATGAGT 60.599 55.000 36.87 8.80 0.00 3.41
234 235 0.598419 TGGAGCGCGCTTCATATGAG 60.598 55.000 37.44 2.00 0.00 2.90
235 236 0.179086 TTGGAGCGCGCTTCATATGA 60.179 50.000 40.46 24.56 30.62 2.15
237 238 1.265095 CATTTGGAGCGCGCTTCATAT 59.735 47.619 40.46 35.70 30.62 1.78
238 239 0.657312 CATTTGGAGCGCGCTTCATA 59.343 50.000 40.46 35.18 30.62 2.15
239 240 1.430632 CATTTGGAGCGCGCTTCAT 59.569 52.632 40.46 25.74 30.62 2.57
240 241 2.869646 CATTTGGAGCGCGCTTCA 59.130 55.556 37.44 37.44 0.00 3.02
241 242 2.577911 GCATTTGGAGCGCGCTTC 60.578 61.111 36.87 34.66 0.00 3.86
248 249 2.481212 TCCATGTCGCATTTGGAGC 58.519 52.632 0.00 0.00 34.65 4.70
250 251 1.031571 GGCTCCATGTCGCATTTGGA 61.032 55.000 5.91 0.00 37.20 3.53
252 253 0.099968 CAGGCTCCATGTCGCATTTG 59.900 55.000 5.91 0.00 0.00 2.32
254 255 0.745845 GACAGGCTCCATGTCGCATT 60.746 55.000 5.91 0.00 37.88 3.56
255 256 1.153289 GACAGGCTCCATGTCGCAT 60.153 57.895 5.91 0.00 37.88 4.73
256 257 2.265739 GACAGGCTCCATGTCGCA 59.734 61.111 5.91 0.00 37.88 5.10
343 344 5.533528 AACAGGTTAATGTCCTTGGTAACAC 59.466 40.000 0.00 0.00 38.55 3.32
372 373 3.565307 TCTGCTCCTGGTTCATGTTTTT 58.435 40.909 0.00 0.00 0.00 1.94
377 378 1.004044 ACCTTCTGCTCCTGGTTCATG 59.996 52.381 0.00 0.00 0.00 3.07
378 379 1.280421 GACCTTCTGCTCCTGGTTCAT 59.720 52.381 0.00 0.00 32.30 2.57
379 380 0.687354 GACCTTCTGCTCCTGGTTCA 59.313 55.000 0.00 0.00 32.30 3.18
380 381 0.687354 TGACCTTCTGCTCCTGGTTC 59.313 55.000 0.00 0.00 32.30 3.62
381 382 1.140312 TTGACCTTCTGCTCCTGGTT 58.860 50.000 0.00 0.00 32.30 3.67
383 384 1.882623 GTTTTGACCTTCTGCTCCTGG 59.117 52.381 0.00 0.00 0.00 4.45
385 386 2.487986 CCAGTTTTGACCTTCTGCTCCT 60.488 50.000 0.00 0.00 0.00 3.69
386 387 1.882623 CCAGTTTTGACCTTCTGCTCC 59.117 52.381 0.00 0.00 0.00 4.70
412 415 2.291865 TGGTGTAGATCTCCTGCTCACT 60.292 50.000 0.00 0.00 0.00 3.41
469 491 1.519719 CTGCCCCAGTCTACAGAGC 59.480 63.158 0.00 0.00 31.67 4.09
661 1357 8.926092 TGTATAGAGTATAGACAGCACTGATT 57.074 34.615 4.31 0.00 0.00 2.57
720 1416 2.295349 AGAACAAAAGTGAGGCATGCAG 59.705 45.455 21.36 0.00 0.00 4.41
759 1455 3.834813 GCTCCATCATCCACTACTCCATA 59.165 47.826 0.00 0.00 0.00 2.74
783 1479 5.275067 TGCATTTAAAAGAGTGGCAGTTT 57.725 34.783 0.00 0.00 0.00 2.66
837 1537 3.307199 CCTTTGGTGGATTGTAGTACGGT 60.307 47.826 0.00 0.00 0.00 4.83
838 1538 3.267483 CCTTTGGTGGATTGTAGTACGG 58.733 50.000 0.00 0.00 0.00 4.02
840 1540 3.681593 TGCCTTTGGTGGATTGTAGTAC 58.318 45.455 0.00 0.00 0.00 2.73
842 1542 2.969821 TGCCTTTGGTGGATTGTAGT 57.030 45.000 0.00 0.00 0.00 2.73
843 1543 3.056607 CCTTTGCCTTTGGTGGATTGTAG 60.057 47.826 0.00 0.00 0.00 2.74
905 1610 3.311106 GTGTGGCTGTGAAATGTGAATG 58.689 45.455 0.00 0.00 0.00 2.67
926 1631 1.173444 CGAGGGAGGGTAGTGATCCG 61.173 65.000 0.00 0.00 33.68 4.18
1287 3034 4.126437 CTCCAACATGGTTTGGGAAAAAC 58.874 43.478 13.55 0.00 45.49 2.43
1391 3138 7.172532 TCGATGAACTAAACAACTGCAACTAAT 59.827 33.333 0.00 0.00 0.00 1.73
1401 3148 7.908193 ACAATTTGTCGATGAACTAAACAAC 57.092 32.000 0.00 0.00 30.14 3.32
1439 3216 6.071728 GCCATGGTTTCTTAGCTGCATATAAT 60.072 38.462 14.67 0.00 0.00 1.28
1440 3217 5.241506 GCCATGGTTTCTTAGCTGCATATAA 59.758 40.000 14.67 0.00 0.00 0.98
1441 3218 4.761739 GCCATGGTTTCTTAGCTGCATATA 59.238 41.667 14.67 0.00 0.00 0.86
1442 3219 3.571401 GCCATGGTTTCTTAGCTGCATAT 59.429 43.478 14.67 0.00 0.00 1.78
1524 3301 3.495806 CCACTGCTTTCTTCTTCTCCAGT 60.496 47.826 0.00 0.00 32.79 4.00
1587 3364 0.528901 CCGTGGACGTGTTGAAGTGA 60.529 55.000 0.00 0.00 37.74 3.41
1611 3388 2.237534 GAGACTCTGCCCAGTCCAGC 62.238 65.000 8.23 0.00 43.53 4.85
1656 3433 2.276732 ACAGGTCCATGTTTCTGTGG 57.723 50.000 10.09 0.00 38.80 4.17
1890 4676 2.939261 GCCCTGGACGGTTTCGAGA 61.939 63.158 0.00 0.00 40.11 4.04
2106 4892 0.684805 GGACCTCGAGGATGTCACCT 60.685 60.000 37.69 12.94 43.64 4.00
2292 5437 1.236616 CCTGAAACTGGCGATGCACA 61.237 55.000 0.00 0.00 0.00 4.57
2380 5528 7.767659 TCATATAGCATAATTGGACTCATGAGC 59.232 37.037 22.83 14.64 0.00 4.26
2432 5580 4.401202 ACATTTCCAACCTTGTCTTCGTTT 59.599 37.500 0.00 0.00 0.00 3.60
2482 5630 7.823745 ACACAACTGAAACCAGAAGAATTAT 57.176 32.000 0.00 0.00 35.67 1.28
2494 5642 4.813296 ATCTTCGGAACACAACTGAAAC 57.187 40.909 0.00 0.00 33.19 2.78
2507 5655 7.566760 ACATGCACAAATAATAATCTTCGGA 57.433 32.000 0.00 0.00 0.00 4.55
2520 5668 2.539274 GCGAACAACAACATGCACAAAT 59.461 40.909 0.00 0.00 0.00 2.32
2532 5680 1.000052 TCATCACCGTAGCGAACAACA 60.000 47.619 0.00 0.00 0.00 3.33
2533 5681 1.389106 GTCATCACCGTAGCGAACAAC 59.611 52.381 0.00 0.00 0.00 3.32
2534 5682 1.000052 TGTCATCACCGTAGCGAACAA 60.000 47.619 0.00 0.00 0.00 2.83
2535 5683 0.599060 TGTCATCACCGTAGCGAACA 59.401 50.000 0.00 0.00 0.00 3.18
2536 5684 1.588404 CATGTCATCACCGTAGCGAAC 59.412 52.381 0.00 0.00 0.00 3.95
2537 5685 1.203758 ACATGTCATCACCGTAGCGAA 59.796 47.619 0.00 0.00 0.00 4.70
2538 5686 0.815095 ACATGTCATCACCGTAGCGA 59.185 50.000 0.00 0.00 0.00 4.93
2540 5688 2.346803 ACAACATGTCATCACCGTAGC 58.653 47.619 0.00 0.00 0.00 3.58
2541 5689 4.562789 CAGTACAACATGTCATCACCGTAG 59.437 45.833 0.00 0.00 0.00 3.51
2542 5690 4.021807 ACAGTACAACATGTCATCACCGTA 60.022 41.667 0.00 0.00 0.00 4.02
2543 5691 3.244078 ACAGTACAACATGTCATCACCGT 60.244 43.478 0.00 0.00 0.00 4.83
2544 5692 3.325870 ACAGTACAACATGTCATCACCG 58.674 45.455 0.00 0.00 0.00 4.94
2545 5693 4.754618 TCAACAGTACAACATGTCATCACC 59.245 41.667 0.00 0.00 0.00 4.02
2546 5694 5.922739 TCAACAGTACAACATGTCATCAC 57.077 39.130 0.00 0.00 0.00 3.06
2547 5695 7.445096 AGAAATCAACAGTACAACATGTCATCA 59.555 33.333 0.00 0.00 0.00 3.07
2548 5696 7.810658 AGAAATCAACAGTACAACATGTCATC 58.189 34.615 0.00 0.00 0.00 2.92
2549 5697 7.750229 AGAAATCAACAGTACAACATGTCAT 57.250 32.000 0.00 0.00 0.00 3.06
2550 5698 8.846943 ATAGAAATCAACAGTACAACATGTCA 57.153 30.769 0.00 0.00 0.00 3.58
2597 5745 9.850628 GTTGATGTATACGGCTAGATTATTACA 57.149 33.333 0.00 0.00 0.00 2.41
2600 5748 9.587772 GATGTTGATGTATACGGCTAGATTATT 57.412 33.333 0.00 0.00 0.00 1.40
2753 5901 8.611757 GTTGGCTTCAAACTGAATTGTATTTTT 58.388 29.630 0.00 0.00 35.59 1.94
2759 5907 3.130340 ACGTTGGCTTCAAACTGAATTGT 59.870 39.130 0.00 0.00 35.59 2.71
2775 5923 2.565046 TGGGGGTAAAACTACGTTGG 57.435 50.000 0.00 0.00 0.00 3.77
2824 5972 9.918630 GTTTCTACAACTAGTTTGACTACCATA 57.081 33.333 5.07 0.00 38.73 2.74
2825 5973 7.876582 GGTTTCTACAACTAGTTTGACTACCAT 59.123 37.037 5.07 0.00 38.73 3.55
2826 5974 7.212274 GGTTTCTACAACTAGTTTGACTACCA 58.788 38.462 5.07 0.00 38.73 3.25
2849 5997 4.373156 AGAGTGCTTGTAGAAATTGGGT 57.627 40.909 0.00 0.00 0.00 4.51
2859 6007 1.736645 GCGGCGAAGAGTGCTTGTA 60.737 57.895 12.98 0.00 33.61 2.41
2900 7593 1.274447 GTACGGGTGACATATAGGCCC 59.726 57.143 0.00 0.00 36.08 5.80
2922 7615 7.754069 TTGTTGGCGATTCATATTTGAAATC 57.246 32.000 2.59 1.74 44.70 2.17
2926 7619 5.092105 CGTTTGTTGGCGATTCATATTTGA 58.908 37.500 0.00 0.00 0.00 2.69
2938 7631 0.653323 CTTGTCGTCGTTTGTTGGCG 60.653 55.000 0.00 0.00 0.00 5.69
2942 7635 0.655733 CCAGCTTGTCGTCGTTTGTT 59.344 50.000 0.00 0.00 0.00 2.83
2944 7637 0.232303 GACCAGCTTGTCGTCGTTTG 59.768 55.000 1.66 0.00 0.00 2.93
2945 7638 2.601562 GACCAGCTTGTCGTCGTTT 58.398 52.632 1.66 0.00 0.00 3.60
2999 7692 5.227569 TGATAGAAAACAGGAGCTGAACA 57.772 39.130 0.00 0.00 35.18 3.18
3004 7697 5.489792 TGAGTTGATAGAAAACAGGAGCT 57.510 39.130 0.00 0.00 0.00 4.09
3005 7698 6.560253 TTTGAGTTGATAGAAAACAGGAGC 57.440 37.500 0.00 0.00 0.00 4.70
3029 7722 7.936496 AAACCATTGAAAACATGACCTTTTT 57.064 28.000 0.00 0.00 0.00 1.94
3030 7723 7.936496 AAAACCATTGAAAACATGACCTTTT 57.064 28.000 0.00 0.00 0.00 2.27
3031 7724 7.936496 AAAAACCATTGAAAACATGACCTTT 57.064 28.000 0.00 0.00 0.00 3.11
3065 7758 6.183360 GCAGAAAACTGGTGAGAAAACAAAAG 60.183 38.462 0.00 0.00 0.00 2.27
3071 7774 2.357637 CCGCAGAAAACTGGTGAGAAAA 59.642 45.455 0.00 0.00 0.00 2.29
3075 7778 1.308998 AACCGCAGAAAACTGGTGAG 58.691 50.000 0.00 0.00 34.26 3.51
3101 7806 8.490311 ACAGATAAAACCAAAGGAAATGGAAAA 58.510 29.630 0.00 0.00 40.56 2.29
3107 7812 7.936847 GGGAAAACAGATAAAACCAAAGGAAAT 59.063 33.333 0.00 0.00 0.00 2.17
3287 8003 7.062255 GCTTCATGTGTGCTCTAAAAATTTACC 59.938 37.037 0.00 0.00 0.00 2.85
3294 8010 5.710513 AATGCTTCATGTGTGCTCTAAAA 57.289 34.783 0.00 0.00 0.00 1.52
3296 8012 5.244755 TGTAATGCTTCATGTGTGCTCTAA 58.755 37.500 0.00 0.00 0.00 2.10
3316 8032 8.865090 AGGTATTTGAAAAATGACCAACATGTA 58.135 29.630 0.00 0.00 39.39 2.29


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.