Multiple sequence alignment - TraesCS5D01G468000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G468000 chr5D 100.000 4821 0 0 1 4821 509566406 509571226 0.000000e+00 8903.0
1 TraesCS5D01G468000 chr5B 89.180 2828 106 96 1647 4360 640401781 640404522 0.000000e+00 3343.0
2 TraesCS5D01G468000 chr5B 85.726 1212 74 52 453 1612 640400642 640401806 0.000000e+00 1188.0
3 TraesCS5D01G468000 chr5B 85.075 134 3 5 4705 4821 640406464 640406597 2.360000e-23 121.0
4 TraesCS5D01G468000 chr5A 86.912 2934 163 116 267 3085 637055206 637058033 0.000000e+00 3086.0
5 TraesCS5D01G468000 chr5A 85.782 1484 96 65 3103 4504 637058418 637059868 0.000000e+00 1465.0
6 TraesCS5D01G468000 chr5A 84.239 184 11 6 4489 4659 637062897 637063075 3.860000e-36 163.0
7 TraesCS5D01G468000 chr5A 88.158 76 9 0 196 271 394177153 394177228 1.850000e-14 91.6
8 TraesCS5D01G468000 chr5A 94.828 58 3 0 1739 1796 636978408 636978465 1.850000e-14 91.6
9 TraesCS5D01G468000 chr2A 88.976 381 41 1 3438 3817 144948987 144949367 2.030000e-128 470.0
10 TraesCS5D01G468000 chr2B 88.451 381 43 1 3438 3817 212309330 212308950 4.400000e-125 459.0
11 TraesCS5D01G468000 chr2B 87.179 117 15 0 9 125 48030736 48030620 3.030000e-27 134.0
12 TraesCS5D01G468000 chr2D 87.927 381 45 1 3438 3817 155412766 155412386 9.520000e-122 448.0
13 TraesCS5D01G468000 chr3B 94.815 135 7 0 1 135 82213614 82213480 1.360000e-50 211.0
14 TraesCS5D01G468000 chr1D 94.697 132 7 0 1 132 286372082 286371951 6.320000e-49 206.0
15 TraesCS5D01G468000 chr1D 89.431 123 13 0 7 129 26647842 26647720 6.460000e-34 156.0
16 TraesCS5D01G468000 chr6A 94.656 131 7 0 1 131 573495539 573495409 2.270000e-48 204.0
17 TraesCS5D01G468000 chr4D 89.600 125 13 0 1 125 502423993 502423869 4.990000e-35 159.0
18 TraesCS5D01G468000 chr6B 87.200 125 16 0 1 125 462147297 462147421 5.030000e-30 143.0
19 TraesCS5D01G468000 chr7D 77.465 142 28 4 132 271 6000453 6000314 1.110000e-11 82.4
20 TraesCS5D01G468000 chr7A 96.875 32 1 0 240 271 172981902 172981871 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G468000 chr5D 509566406 509571226 4820 False 8903.000000 8903 100.000000 1 4821 1 chr5D.!!$F1 4820
1 TraesCS5D01G468000 chr5B 640400642 640406597 5955 False 1550.666667 3343 86.660333 453 4821 3 chr5B.!!$F1 4368
2 TraesCS5D01G468000 chr5A 637055206 637063075 7869 False 1571.333333 3086 85.644333 267 4659 3 chr5A.!!$F3 4392

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
251 252 0.036388 TGAGGCCGATTTGAGACACC 60.036 55.0 0.00 0.0 0.00 4.16 F
263 264 0.103208 GAGACACCCGGCTGTAGATG 59.897 60.0 1.41 0.0 0.00 2.90 F
1542 1634 0.178967 TCAGTGGATGCCAGCCAAAA 60.179 50.0 1.73 0.0 37.12 2.44 F
2479 2598 0.107508 AGATCAGCCAACCACCGATG 60.108 55.0 0.00 0.0 0.00 3.84 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2227 2343 0.179023 TTCATGCACAGCACCAGTCA 60.179 50.0 0.00 0.00 43.04 3.41 R
2228 2344 0.520404 CTTCATGCACAGCACCAGTC 59.480 55.0 0.00 0.00 43.04 3.51 R
3339 3870 0.179081 CTTCAGTAGGGGTTAGCCGC 60.179 60.0 4.34 4.34 46.91 6.53 R
3829 4395 0.318441 CTCGTCAGTCATGGTGGTGT 59.682 55.0 0.00 0.00 0.00 4.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.091694 TTGGCGGCCCAATCCTTA 58.908 55.556 17.97 0.00 46.01 2.69
19 20 1.077068 TTGGCGGCCCAATCCTTAG 60.077 57.895 17.97 0.00 46.01 2.18
20 21 2.203351 GGCGGCCCAATCCTTAGG 60.203 66.667 8.12 0.00 0.00 2.69
21 22 2.752807 GGCGGCCCAATCCTTAGGA 61.753 63.158 8.12 2.37 35.55 2.94
22 23 1.226262 GCGGCCCAATCCTTAGGAA 59.774 57.895 4.56 0.00 34.34 3.36
23 24 0.178990 GCGGCCCAATCCTTAGGAAT 60.179 55.000 4.56 0.00 34.34 3.01
24 25 1.754201 GCGGCCCAATCCTTAGGAATT 60.754 52.381 4.56 0.00 34.34 2.17
25 26 2.666317 CGGCCCAATCCTTAGGAATTT 58.334 47.619 4.56 0.00 34.34 1.82
26 27 3.031013 CGGCCCAATCCTTAGGAATTTT 58.969 45.455 4.56 0.00 34.34 1.82
27 28 4.211920 CGGCCCAATCCTTAGGAATTTTA 58.788 43.478 4.56 0.00 34.34 1.52
28 29 4.278419 CGGCCCAATCCTTAGGAATTTTAG 59.722 45.833 4.56 0.00 34.34 1.85
29 30 5.208890 GGCCCAATCCTTAGGAATTTTAGT 58.791 41.667 4.56 0.00 34.34 2.24
30 31 5.069119 GGCCCAATCCTTAGGAATTTTAGTG 59.931 44.000 4.56 0.00 34.34 2.74
31 32 5.891551 GCCCAATCCTTAGGAATTTTAGTGA 59.108 40.000 4.56 0.00 34.34 3.41
32 33 6.183360 GCCCAATCCTTAGGAATTTTAGTGAC 60.183 42.308 4.56 0.00 34.34 3.67
33 34 6.321435 CCCAATCCTTAGGAATTTTAGTGACC 59.679 42.308 4.56 0.00 34.34 4.02
34 35 6.321435 CCAATCCTTAGGAATTTTAGTGACCC 59.679 42.308 4.56 0.00 34.34 4.46
35 36 6.652205 ATCCTTAGGAATTTTAGTGACCCA 57.348 37.500 4.56 0.00 34.34 4.51
36 37 6.457159 TCCTTAGGAATTTTAGTGACCCAA 57.543 37.500 0.00 0.00 0.00 4.12
37 38 7.039722 TCCTTAGGAATTTTAGTGACCCAAT 57.960 36.000 0.00 0.00 0.00 3.16
38 39 7.116736 TCCTTAGGAATTTTAGTGACCCAATC 58.883 38.462 0.00 0.00 0.00 2.67
39 40 6.321435 CCTTAGGAATTTTAGTGACCCAATCC 59.679 42.308 0.00 0.00 0.00 3.01
40 41 5.536497 AGGAATTTTAGTGACCCAATCCT 57.464 39.130 0.00 0.00 0.00 3.24
41 42 5.264395 AGGAATTTTAGTGACCCAATCCTG 58.736 41.667 0.00 0.00 0.00 3.86
42 43 5.016831 GGAATTTTAGTGACCCAATCCTGT 58.983 41.667 0.00 0.00 0.00 4.00
43 44 5.105756 GGAATTTTAGTGACCCAATCCTGTG 60.106 44.000 0.00 0.00 0.00 3.66
44 45 4.715534 TTTTAGTGACCCAATCCTGTGA 57.284 40.909 0.00 0.00 0.00 3.58
45 46 4.927267 TTTAGTGACCCAATCCTGTGAT 57.073 40.909 0.00 0.00 0.00 3.06
46 47 4.487714 TTAGTGACCCAATCCTGTGATC 57.512 45.455 0.00 0.00 0.00 2.92
47 48 1.561542 AGTGACCCAATCCTGTGATCC 59.438 52.381 0.00 0.00 0.00 3.36
48 49 1.281867 GTGACCCAATCCTGTGATCCA 59.718 52.381 0.00 0.00 0.00 3.41
49 50 1.991813 TGACCCAATCCTGTGATCCAA 59.008 47.619 0.00 0.00 0.00 3.53
50 51 2.378208 TGACCCAATCCTGTGATCCAAA 59.622 45.455 0.00 0.00 0.00 3.28
51 52 3.011595 TGACCCAATCCTGTGATCCAAAT 59.988 43.478 0.00 0.00 0.00 2.32
52 53 3.368248 ACCCAATCCTGTGATCCAAATG 58.632 45.455 0.00 0.00 0.00 2.32
53 54 2.101917 CCCAATCCTGTGATCCAAATGC 59.898 50.000 0.00 0.00 0.00 3.56
54 55 2.761767 CCAATCCTGTGATCCAAATGCA 59.238 45.455 0.00 0.00 0.00 3.96
55 56 3.386726 CCAATCCTGTGATCCAAATGCAT 59.613 43.478 0.00 0.00 0.00 3.96
56 57 4.141801 CCAATCCTGTGATCCAAATGCATT 60.142 41.667 5.99 5.99 0.00 3.56
57 58 4.931661 ATCCTGTGATCCAAATGCATTC 57.068 40.909 13.38 0.00 0.00 2.67
58 59 3.025978 TCCTGTGATCCAAATGCATTCC 58.974 45.455 13.38 1.04 0.00 3.01
59 60 2.761767 CCTGTGATCCAAATGCATTCCA 59.238 45.455 13.38 3.63 0.00 3.53
60 61 3.386726 CCTGTGATCCAAATGCATTCCAT 59.613 43.478 13.38 4.94 35.06 3.41
61 62 4.585581 CCTGTGATCCAAATGCATTCCATA 59.414 41.667 13.38 0.00 32.67 2.74
62 63 5.278808 CCTGTGATCCAAATGCATTCCATAG 60.279 44.000 13.38 12.21 32.67 2.23
63 64 4.585581 TGTGATCCAAATGCATTCCATAGG 59.414 41.667 13.38 9.96 32.67 2.57
64 65 4.828939 GTGATCCAAATGCATTCCATAGGA 59.171 41.667 13.38 14.62 40.44 2.94
65 66 5.302568 GTGATCCAAATGCATTCCATAGGAA 59.697 40.000 13.38 0.30 46.39 3.36
66 67 5.898397 TGATCCAAATGCATTCCATAGGAAA 59.102 36.000 13.38 6.08 45.41 3.13
67 68 5.596836 TCCAAATGCATTCCATAGGAAAC 57.403 39.130 13.38 0.00 45.41 2.78
68 69 5.022122 TCCAAATGCATTCCATAGGAAACA 58.978 37.500 13.38 5.12 45.41 2.83
69 70 5.483231 TCCAAATGCATTCCATAGGAAACAA 59.517 36.000 13.38 0.00 45.41 2.83
70 71 6.156602 TCCAAATGCATTCCATAGGAAACAAT 59.843 34.615 13.38 0.00 45.41 2.71
71 72 6.480981 CCAAATGCATTCCATAGGAAACAATC 59.519 38.462 13.38 0.00 45.41 2.67
72 73 5.796424 ATGCATTCCATAGGAAACAATCC 57.204 39.130 2.16 0.00 45.41 3.01
87 88 7.941919 GGAAACAATCCTAAGGTTTGATATCC 58.058 38.462 0.00 0.00 45.56 2.59
88 89 7.014326 GGAAACAATCCTAAGGTTTGATATCCC 59.986 40.741 0.00 0.00 45.56 3.85
89 90 5.621193 ACAATCCTAAGGTTTGATATCCCG 58.379 41.667 0.00 0.00 36.30 5.14
90 91 5.132144 ACAATCCTAAGGTTTGATATCCCGT 59.868 40.000 0.00 0.00 36.30 5.28
91 92 4.682778 TCCTAAGGTTTGATATCCCGTG 57.317 45.455 0.00 0.00 0.00 4.94
92 93 4.291792 TCCTAAGGTTTGATATCCCGTGA 58.708 43.478 0.00 0.00 0.00 4.35
93 94 4.344102 TCCTAAGGTTTGATATCCCGTGAG 59.656 45.833 0.00 0.00 0.00 3.51
94 95 4.344102 CCTAAGGTTTGATATCCCGTGAGA 59.656 45.833 0.00 0.00 0.00 3.27
95 96 4.837093 AAGGTTTGATATCCCGTGAGAA 57.163 40.909 0.00 0.00 0.00 2.87
96 97 5.373812 AAGGTTTGATATCCCGTGAGAAT 57.626 39.130 0.00 0.00 0.00 2.40
97 98 4.962155 AGGTTTGATATCCCGTGAGAATC 58.038 43.478 0.00 0.00 0.00 2.52
98 99 4.065789 GGTTTGATATCCCGTGAGAATCC 58.934 47.826 0.00 0.00 0.00 3.01
99 100 4.202367 GGTTTGATATCCCGTGAGAATCCT 60.202 45.833 0.00 0.00 0.00 3.24
100 101 4.607293 TTGATATCCCGTGAGAATCCTG 57.393 45.455 0.00 0.00 0.00 3.86
101 102 3.576861 TGATATCCCGTGAGAATCCTGT 58.423 45.455 0.00 0.00 0.00 4.00
102 103 4.736473 TGATATCCCGTGAGAATCCTGTA 58.264 43.478 0.00 0.00 0.00 2.74
103 104 5.144832 TGATATCCCGTGAGAATCCTGTAA 58.855 41.667 0.00 0.00 0.00 2.41
104 105 5.600898 TGATATCCCGTGAGAATCCTGTAAA 59.399 40.000 0.00 0.00 0.00 2.01
105 106 4.837093 ATCCCGTGAGAATCCTGTAAAA 57.163 40.909 0.00 0.00 0.00 1.52
106 107 4.627284 TCCCGTGAGAATCCTGTAAAAA 57.373 40.909 0.00 0.00 0.00 1.94
107 108 5.174037 TCCCGTGAGAATCCTGTAAAAAT 57.826 39.130 0.00 0.00 0.00 1.82
108 109 5.183228 TCCCGTGAGAATCCTGTAAAAATC 58.817 41.667 0.00 0.00 0.00 2.17
109 110 5.045869 TCCCGTGAGAATCCTGTAAAAATCT 60.046 40.000 0.00 0.00 0.00 2.40
110 111 5.648092 CCCGTGAGAATCCTGTAAAAATCTT 59.352 40.000 0.00 0.00 0.00 2.40
111 112 6.183360 CCCGTGAGAATCCTGTAAAAATCTTC 60.183 42.308 0.00 0.00 0.00 2.87
112 113 6.183360 CCGTGAGAATCCTGTAAAAATCTTCC 60.183 42.308 0.00 0.00 0.00 3.46
113 114 6.371548 CGTGAGAATCCTGTAAAAATCTTCCA 59.628 38.462 0.00 0.00 0.00 3.53
114 115 7.094805 CGTGAGAATCCTGTAAAAATCTTCCAA 60.095 37.037 0.00 0.00 0.00 3.53
115 116 8.743714 GTGAGAATCCTGTAAAAATCTTCCAAT 58.256 33.333 0.00 0.00 0.00 3.16
116 117 8.960591 TGAGAATCCTGTAAAAATCTTCCAATC 58.039 33.333 0.00 0.00 0.00 2.67
117 118 8.298729 AGAATCCTGTAAAAATCTTCCAATCC 57.701 34.615 0.00 0.00 0.00 3.01
118 119 7.895429 AGAATCCTGTAAAAATCTTCCAATCCA 59.105 33.333 0.00 0.00 0.00 3.41
119 120 8.434589 AATCCTGTAAAAATCTTCCAATCCAA 57.565 30.769 0.00 0.00 0.00 3.53
120 121 7.847711 TCCTGTAAAAATCTTCCAATCCAAA 57.152 32.000 0.00 0.00 0.00 3.28
121 122 8.256356 TCCTGTAAAAATCTTCCAATCCAAAA 57.744 30.769 0.00 0.00 0.00 2.44
122 123 8.709308 TCCTGTAAAAATCTTCCAATCCAAAAA 58.291 29.630 0.00 0.00 0.00 1.94
143 144 2.457366 GCCGTTAGGGTGGATATGAG 57.543 55.000 0.00 0.00 38.44 2.90
144 145 1.002087 GCCGTTAGGGTGGATATGAGG 59.998 57.143 0.00 0.00 38.44 3.86
145 146 1.623811 CCGTTAGGGTGGATATGAGGG 59.376 57.143 0.00 0.00 0.00 4.30
146 147 1.623811 CGTTAGGGTGGATATGAGGGG 59.376 57.143 0.00 0.00 0.00 4.79
147 148 1.351350 GTTAGGGTGGATATGAGGGGC 59.649 57.143 0.00 0.00 0.00 5.80
148 149 0.544357 TAGGGTGGATATGAGGGGCG 60.544 60.000 0.00 0.00 0.00 6.13
149 150 2.032681 GGTGGATATGAGGGGCGC 59.967 66.667 0.00 0.00 0.00 6.53
150 151 2.032681 GTGGATATGAGGGGCGCC 59.967 66.667 21.18 21.18 0.00 6.53
151 152 3.625897 TGGATATGAGGGGCGCCG 61.626 66.667 22.54 0.00 0.00 6.46
152 153 3.311110 GGATATGAGGGGCGCCGA 61.311 66.667 22.54 4.20 0.00 5.54
153 154 2.660064 GGATATGAGGGGCGCCGAT 61.660 63.158 22.54 11.72 0.00 4.18
154 155 1.153549 GATATGAGGGGCGCCGATC 60.154 63.158 22.54 20.82 0.00 3.69
155 156 1.888436 GATATGAGGGGCGCCGATCA 61.888 60.000 27.96 27.96 0.00 2.92
156 157 1.892819 ATATGAGGGGCGCCGATCAG 61.893 60.000 28.89 0.00 0.00 2.90
174 175 3.508840 CCCGGGCGTTTGATGCTC 61.509 66.667 8.08 0.00 0.00 4.26
177 178 2.785258 GGGCGTTTGATGCTCGTC 59.215 61.111 0.00 0.00 0.00 4.20
178 179 1.741770 GGGCGTTTGATGCTCGTCT 60.742 57.895 0.00 0.00 0.00 4.18
179 180 1.421485 GGCGTTTGATGCTCGTCTG 59.579 57.895 0.00 0.00 0.00 3.51
180 181 1.014044 GGCGTTTGATGCTCGTCTGA 61.014 55.000 0.00 0.00 0.00 3.27
181 182 0.368227 GCGTTTGATGCTCGTCTGAG 59.632 55.000 0.00 0.00 45.49 3.35
182 183 0.994995 CGTTTGATGCTCGTCTGAGG 59.005 55.000 0.00 0.00 42.79 3.86
183 184 0.723981 GTTTGATGCTCGTCTGAGGC 59.276 55.000 0.00 0.00 42.79 4.70
184 185 0.610174 TTTGATGCTCGTCTGAGGCT 59.390 50.000 0.00 0.00 42.79 4.58
185 186 0.174389 TTGATGCTCGTCTGAGGCTC 59.826 55.000 7.79 7.79 42.79 4.70
186 187 0.967380 TGATGCTCGTCTGAGGCTCA 60.967 55.000 17.68 17.68 42.79 4.26
187 188 0.174389 GATGCTCGTCTGAGGCTCAA 59.826 55.000 19.29 6.96 42.79 3.02
188 189 0.610174 ATGCTCGTCTGAGGCTCAAA 59.390 50.000 19.29 1.45 42.79 2.69
189 190 0.392706 TGCTCGTCTGAGGCTCAAAA 59.607 50.000 19.29 6.91 42.79 2.44
190 191 1.202639 TGCTCGTCTGAGGCTCAAAAA 60.203 47.619 19.29 4.22 42.79 1.94
209 210 3.417069 AAAATGGTGATCGGTCAGTGA 57.583 42.857 0.00 0.00 34.36 3.41
210 211 2.386661 AATGGTGATCGGTCAGTGAC 57.613 50.000 15.24 15.24 34.36 3.67
218 219 4.065281 GGTCAGTGACCGGACGGG 62.065 72.222 26.12 6.67 43.14 5.28
219 220 4.736896 GTCAGTGACCGGACGGGC 62.737 72.222 9.46 13.29 45.60 6.13
235 236 3.508840 GCCGCCCGGACATTTGAG 61.509 66.667 11.48 0.00 37.50 3.02
236 237 2.824041 CCGCCCGGACATTTGAGG 60.824 66.667 0.73 0.00 37.50 3.86
237 238 3.508840 CGCCCGGACATTTGAGGC 61.509 66.667 0.73 0.00 40.33 4.70
238 239 3.140814 GCCCGGACATTTGAGGCC 61.141 66.667 0.73 0.00 37.66 5.19
239 240 2.824041 CCCGGACATTTGAGGCCG 60.824 66.667 0.73 0.29 43.20 6.13
240 241 2.267642 CCGGACATTTGAGGCCGA 59.732 61.111 10.25 0.00 46.29 5.54
241 242 1.153168 CCGGACATTTGAGGCCGAT 60.153 57.895 10.25 0.00 46.29 4.18
242 243 0.748005 CCGGACATTTGAGGCCGATT 60.748 55.000 10.25 0.00 46.29 3.34
243 244 1.094785 CGGACATTTGAGGCCGATTT 58.905 50.000 1.15 0.00 46.29 2.17
244 245 1.202177 CGGACATTTGAGGCCGATTTG 60.202 52.381 1.15 0.00 46.29 2.32
245 246 2.091541 GGACATTTGAGGCCGATTTGA 58.908 47.619 0.00 0.00 0.00 2.69
246 247 2.098117 GGACATTTGAGGCCGATTTGAG 59.902 50.000 0.00 0.00 0.00 3.02
247 248 3.009723 GACATTTGAGGCCGATTTGAGA 58.990 45.455 0.00 0.00 0.00 3.27
248 249 2.749621 ACATTTGAGGCCGATTTGAGAC 59.250 45.455 0.00 0.00 0.00 3.36
249 250 2.559698 TTTGAGGCCGATTTGAGACA 57.440 45.000 0.00 0.00 0.00 3.41
250 251 1.808411 TTGAGGCCGATTTGAGACAC 58.192 50.000 0.00 0.00 0.00 3.67
251 252 0.036388 TGAGGCCGATTTGAGACACC 60.036 55.000 0.00 0.00 0.00 4.16
252 253 0.744771 GAGGCCGATTTGAGACACCC 60.745 60.000 0.00 0.00 0.00 4.61
253 254 2.106683 GGCCGATTTGAGACACCCG 61.107 63.158 0.00 0.00 0.00 5.28
254 255 2.106683 GCCGATTTGAGACACCCGG 61.107 63.158 0.00 0.00 39.88 5.73
255 256 2.106683 CCGATTTGAGACACCCGGC 61.107 63.158 0.00 0.00 0.00 6.13
256 257 1.079127 CGATTTGAGACACCCGGCT 60.079 57.895 0.00 0.00 0.00 5.52
257 258 1.361668 CGATTTGAGACACCCGGCTG 61.362 60.000 0.00 0.00 0.00 4.85
258 259 0.321653 GATTTGAGACACCCGGCTGT 60.322 55.000 0.88 0.88 0.00 4.40
259 260 0.981183 ATTTGAGACACCCGGCTGTA 59.019 50.000 1.41 0.00 0.00 2.74
260 261 0.320374 TTTGAGACACCCGGCTGTAG 59.680 55.000 1.41 0.00 0.00 2.74
261 262 0.541063 TTGAGACACCCGGCTGTAGA 60.541 55.000 1.41 0.00 0.00 2.59
262 263 0.324368 TGAGACACCCGGCTGTAGAT 60.324 55.000 1.41 0.00 0.00 1.98
263 264 0.103208 GAGACACCCGGCTGTAGATG 59.897 60.000 1.41 0.00 0.00 2.90
264 265 1.521681 GACACCCGGCTGTAGATGC 60.522 63.158 1.41 0.00 0.00 3.91
265 266 1.961180 GACACCCGGCTGTAGATGCT 61.961 60.000 1.41 0.00 0.00 3.79
266 267 1.227380 CACCCGGCTGTAGATGCTC 60.227 63.158 0.00 0.00 0.00 4.26
267 268 1.381872 ACCCGGCTGTAGATGCTCT 60.382 57.895 0.00 0.00 0.00 4.09
268 269 0.978146 ACCCGGCTGTAGATGCTCTT 60.978 55.000 0.00 0.00 0.00 2.85
269 270 1.040646 CCCGGCTGTAGATGCTCTTA 58.959 55.000 0.00 0.00 0.00 2.10
270 271 1.620819 CCCGGCTGTAGATGCTCTTAT 59.379 52.381 0.00 0.00 0.00 1.73
271 272 2.037772 CCCGGCTGTAGATGCTCTTATT 59.962 50.000 0.00 0.00 0.00 1.40
297 298 5.643379 ACAAAGTTGTTCTCTTTTCTGCA 57.357 34.783 0.00 0.00 38.47 4.41
301 302 5.192327 AGTTGTTCTCTTTTCTGCATTGG 57.808 39.130 0.00 0.00 0.00 3.16
314 315 2.104622 CTGCATTGGGGAAACAAGGTTT 59.895 45.455 0.00 0.00 34.84 3.27
316 317 2.103941 GCATTGGGGAAACAAGGTTTGA 59.896 45.455 0.00 0.00 34.84 2.69
318 319 4.317488 CATTGGGGAAACAAGGTTTGATG 58.683 43.478 0.00 0.00 33.23 3.07
327 328 5.391312 AACAAGGTTTGATGTGCTATTCC 57.609 39.130 0.00 0.00 0.00 3.01
328 329 4.666512 ACAAGGTTTGATGTGCTATTCCT 58.333 39.130 0.00 0.00 0.00 3.36
331 332 5.957771 AGGTTTGATGTGCTATTCCTCTA 57.042 39.130 0.00 0.00 0.00 2.43
334 335 6.069963 AGGTTTGATGTGCTATTCCTCTACTT 60.070 38.462 0.00 0.00 0.00 2.24
358 359 7.056844 TCAACCTTTGTATTTTAGGGTTTGG 57.943 36.000 0.00 0.00 35.24 3.28
365 366 5.799213 TGTATTTTAGGGTTTGGCATTTGG 58.201 37.500 0.00 0.00 0.00 3.28
366 367 4.991789 ATTTTAGGGTTTGGCATTTGGT 57.008 36.364 0.00 0.00 0.00 3.67
378 379 5.518848 TGGCATTTGGTAAGCATATCAAG 57.481 39.130 0.00 0.00 33.78 3.02
379 380 4.955450 TGGCATTTGGTAAGCATATCAAGT 59.045 37.500 0.00 0.00 33.78 3.16
380 381 6.125719 TGGCATTTGGTAAGCATATCAAGTA 58.874 36.000 0.00 0.00 33.78 2.24
381 382 6.777091 TGGCATTTGGTAAGCATATCAAGTAT 59.223 34.615 0.00 0.00 33.78 2.12
382 383 7.941790 TGGCATTTGGTAAGCATATCAAGTATA 59.058 33.333 0.00 0.00 33.78 1.47
388 389 6.092122 TGGTAAGCATATCAAGTATATTGCGC 59.908 38.462 0.00 0.00 33.45 6.09
392 393 4.336433 GCATATCAAGTATATTGCGCCCAT 59.664 41.667 4.18 0.00 0.00 4.00
393 394 5.504665 GCATATCAAGTATATTGCGCCCATC 60.505 44.000 4.18 0.00 0.00 3.51
406 407 1.660560 GCCCATCGCAAAGCAGATGT 61.661 55.000 16.43 0.00 37.63 3.06
412 413 4.023450 CCATCGCAAAGCAGATGTCATATT 60.023 41.667 16.43 0.00 37.63 1.28
418 419 6.237384 CGCAAAGCAGATGTCATATTTTTCAC 60.237 38.462 0.00 0.00 0.00 3.18
423 424 7.669427 AGCAGATGTCATATTTTTCACCAAAA 58.331 30.769 0.00 0.00 38.76 2.44
438 439 7.363443 TTTTCACCAAAAATATAGGCTACTGCC 60.363 37.037 0.00 0.00 44.35 4.85
524 549 4.477975 GCTCCGTCTGACGTCCGG 62.478 72.222 26.35 21.31 40.58 5.14
603 634 2.983592 CCCGGAAAAAGCCACGCT 60.984 61.111 0.73 0.00 42.56 5.07
606 637 2.314647 CGGAAAAAGCCACGCTCGA 61.315 57.895 0.00 0.00 38.25 4.04
660 691 4.135153 CGGACGGCACTCCCTCAG 62.135 72.222 0.00 0.00 0.00 3.35
662 693 3.695606 GACGGCACTCCCTCAGCA 61.696 66.667 0.00 0.00 0.00 4.41
664 695 2.032528 CGGCACTCCCTCAGCAAA 59.967 61.111 0.00 0.00 0.00 3.68
665 696 2.037136 CGGCACTCCCTCAGCAAAG 61.037 63.158 0.00 0.00 0.00 2.77
686 722 3.192633 AGAAAGAAAACAAACACCGCAGT 59.807 39.130 0.00 0.00 0.00 4.40
752 796 2.790791 CCTCGCTAGTCCCCAGCTG 61.791 68.421 6.78 6.78 36.86 4.24
785 829 4.363990 CGAGAGTGTGCCACCGCT 62.364 66.667 0.00 0.00 34.49 5.52
906 956 3.646715 TGCGGGAGGGGGTTCTTG 61.647 66.667 0.00 0.00 0.00 3.02
907 957 4.426313 GCGGGAGGGGGTTCTTGG 62.426 72.222 0.00 0.00 0.00 3.61
921 971 4.505039 GGGTTCTTGGTTCTTGAAGCTCTA 60.505 45.833 12.74 0.18 38.02 2.43
926 976 1.204941 GGTTCTTGAAGCTCTAGCCGA 59.795 52.381 5.43 0.00 43.38 5.54
930 980 0.608130 TTGAAGCTCTAGCCGAAGCA 59.392 50.000 4.19 0.00 43.56 3.91
955 1005 2.526628 GGGCGAGGGGATAGGAGA 59.473 66.667 0.00 0.00 0.00 3.71
957 1007 1.461144 GGCGAGGGGATAGGAGAGA 59.539 63.158 0.00 0.00 0.00 3.10
961 1011 1.549037 CGAGGGGATAGGAGAGAAGGG 60.549 61.905 0.00 0.00 0.00 3.95
962 1012 0.192315 AGGGGATAGGAGAGAAGGGC 59.808 60.000 0.00 0.00 0.00 5.19
963 1013 0.192315 GGGGATAGGAGAGAAGGGCT 59.808 60.000 0.00 0.00 0.00 5.19
964 1014 1.433592 GGGGATAGGAGAGAAGGGCTA 59.566 57.143 0.00 0.00 0.00 3.93
966 1016 2.558800 GGGATAGGAGAGAAGGGCTAGG 60.559 59.091 0.00 0.00 0.00 3.02
967 1017 2.558800 GGATAGGAGAGAAGGGCTAGGG 60.559 59.091 0.00 0.00 0.00 3.53
968 1018 1.922774 TAGGAGAGAAGGGCTAGGGA 58.077 55.000 0.00 0.00 0.00 4.20
969 1019 0.560688 AGGAGAGAAGGGCTAGGGAG 59.439 60.000 0.00 0.00 0.00 4.30
994 1048 1.671901 GGAGTGAGCGAAGGAGAGGG 61.672 65.000 0.00 0.00 0.00 4.30
1053 1110 2.512515 GCGGTGATGTGCCTCTCC 60.513 66.667 0.00 0.00 0.00 3.71
1058 1115 1.984026 TGATGTGCCTCTCCTGCGA 60.984 57.895 0.00 0.00 0.00 5.10
1177 1247 3.386402 AGCTACCTAGATTCTTGCTGACC 59.614 47.826 0.00 0.00 0.00 4.02
1178 1248 3.493524 GCTACCTAGATTCTTGCTGACCC 60.494 52.174 0.00 0.00 0.00 4.46
1241 1323 0.850100 TTCCTTCCTGGTCAAAGCCA 59.150 50.000 0.00 0.00 37.07 4.75
1274 1356 3.740321 TCCGTTTCAATCTGCATTTTTGC 59.260 39.130 0.00 0.00 0.00 3.68
1306 1390 1.064134 GATTGATTCAACGGGCGCC 59.936 57.895 21.18 21.18 0.00 6.53
1345 1434 3.254014 CTCAAAGTTGCCACGCCCG 62.254 63.158 0.00 0.00 0.00 6.13
1542 1634 0.178967 TCAGTGGATGCCAGCCAAAA 60.179 50.000 1.73 0.00 37.12 2.44
1612 1708 3.743521 TCAAACTTCAGTCAGTGGATGG 58.256 45.455 0.00 0.00 0.00 3.51
1613 1709 2.191128 AACTTCAGTCAGTGGATGGC 57.809 50.000 0.00 0.00 0.00 4.40
1626 1722 3.329520 AGTGGATGGCAACCAAAGTAGTA 59.670 43.478 18.82 0.00 39.22 1.82
1627 1723 3.439129 GTGGATGGCAACCAAAGTAGTAC 59.561 47.826 18.82 0.00 39.22 2.73
1628 1724 3.014623 GGATGGCAACCAAAGTAGTACC 58.985 50.000 9.17 0.00 36.95 3.34
1629 1725 3.560453 GGATGGCAACCAAAGTAGTACCA 60.560 47.826 9.17 0.00 36.95 3.25
1639 1735 5.603813 ACCAAAGTAGTACCAGTGTCCTTTA 59.396 40.000 0.00 0.00 0.00 1.85
1643 1739 3.963428 AGTACCAGTGTCCTTTAGCAG 57.037 47.619 0.00 0.00 0.00 4.24
1650 1746 2.900546 AGTGTCCTTTAGCAGTGCTACT 59.099 45.455 24.40 15.75 41.12 2.57
1698 1798 6.303370 ACTTTCGTTTGTTTGTTTGCAAATC 58.697 32.000 16.21 9.70 45.11 2.17
1714 1814 0.543277 AATCAATCGAGCAGAGCCCA 59.457 50.000 0.00 0.00 0.00 5.36
1830 1943 1.288350 CATCAGCAGCAGCAGTAGAC 58.712 55.000 3.17 0.00 45.49 2.59
1847 1963 1.139163 GACGCCATTGTTTTTGCTGG 58.861 50.000 0.00 0.00 0.00 4.85
1849 1965 1.344114 ACGCCATTGTTTTTGCTGGAT 59.656 42.857 0.00 0.00 0.00 3.41
1850 1966 2.224257 ACGCCATTGTTTTTGCTGGATT 60.224 40.909 0.00 0.00 0.00 3.01
1851 1967 2.412770 CGCCATTGTTTTTGCTGGATTC 59.587 45.455 0.00 0.00 0.00 2.52
1852 1968 3.401182 GCCATTGTTTTTGCTGGATTCA 58.599 40.909 0.00 0.00 0.00 2.57
1853 1969 3.434299 GCCATTGTTTTTGCTGGATTCAG 59.566 43.478 0.00 0.00 43.64 3.02
1862 1978 3.682766 CTGGATTCAGCGCTGAGAT 57.317 52.632 36.08 29.84 41.13 2.75
1863 1979 1.950828 CTGGATTCAGCGCTGAGATT 58.049 50.000 36.08 25.68 41.13 2.40
2141 2257 4.473520 AACGAGGGCGGCCATCAG 62.474 66.667 30.32 24.01 43.17 2.90
2154 2270 2.125673 ATCAGGTACGTGCACGCC 60.126 61.111 37.35 29.81 44.43 5.68
2166 2282 2.672651 CACGCCTTGCATCCACCA 60.673 61.111 0.00 0.00 0.00 4.17
2167 2283 2.672996 ACGCCTTGCATCCACCAC 60.673 61.111 0.00 0.00 0.00 4.16
2179 2295 2.919772 TCCACCACCTATCTCACTCA 57.080 50.000 0.00 0.00 0.00 3.41
2225 2341 3.777106 AGAAGAAATGCCACTGACTGA 57.223 42.857 0.00 0.00 0.00 3.41
2226 2342 3.406764 AGAAGAAATGCCACTGACTGAC 58.593 45.455 0.00 0.00 0.00 3.51
2227 2343 3.072184 AGAAGAAATGCCACTGACTGACT 59.928 43.478 0.00 0.00 0.00 3.41
2228 2344 2.775890 AGAAATGCCACTGACTGACTG 58.224 47.619 0.00 0.00 0.00 3.51
2232 2348 0.390492 TGCCACTGACTGACTGACTG 59.610 55.000 0.00 0.00 0.00 3.51
2241 2357 1.226686 CTGACTGACTGGTGCTGTGC 61.227 60.000 0.00 0.00 0.00 4.57
2475 2594 2.213499 CGATAAGATCAGCCAACCACC 58.787 52.381 0.00 0.00 0.00 4.61
2476 2595 2.213499 GATAAGATCAGCCAACCACCG 58.787 52.381 0.00 0.00 0.00 4.94
2478 2597 0.620556 AAGATCAGCCAACCACCGAT 59.379 50.000 0.00 0.00 0.00 4.18
2479 2598 0.107508 AGATCAGCCAACCACCGATG 60.108 55.000 0.00 0.00 0.00 3.84
2487 2618 1.086696 CAACCACCGATGTGATCACC 58.913 55.000 22.85 7.67 45.76 4.02
2512 2643 1.960040 CTCGTAGCCCATGCCTGTCA 61.960 60.000 0.00 0.00 38.69 3.58
2525 2656 1.135689 GCCTGTCAACTTAATGCCACG 60.136 52.381 0.00 0.00 0.00 4.94
2619 2754 6.268566 CCCTGAACTTTTCTCTTTTCTGTTG 58.731 40.000 0.00 0.00 0.00 3.33
2717 2852 3.433343 TCTCCCTTCACATAACCGTGTA 58.567 45.455 0.00 0.00 38.12 2.90
2722 2857 6.709281 TCCCTTCACATAACCGTGTAAAATA 58.291 36.000 0.00 0.00 38.12 1.40
2726 2861 9.153721 CCTTCACATAACCGTGTAAAATACTTA 57.846 33.333 0.00 0.00 38.12 2.24
2748 2883 8.992073 ACTTAAAAATTAAGCCTGCAATTCTTG 58.008 29.630 9.23 0.00 0.00 3.02
2770 2913 3.108144 GTGACATGTGCTTGTGTTGTTC 58.892 45.455 1.15 0.00 0.00 3.18
2782 2925 6.142817 GCTTGTGTTGTTCTTAACCTGTATG 58.857 40.000 0.00 0.00 0.00 2.39
2784 2927 7.041644 GCTTGTGTTGTTCTTAACCTGTATGTA 60.042 37.037 0.00 0.00 0.00 2.29
2815 2958 8.178964 TGTTTATTTTGTGTTGTGTAGAGTGAC 58.821 33.333 0.00 0.00 0.00 3.67
2845 2988 2.432444 GCAACAGGGTGCTACAACATA 58.568 47.619 1.23 0.00 41.51 2.29
2971 3114 1.294659 GGAAGGTGAGTGAGCAAGCG 61.295 60.000 0.00 0.00 0.00 4.68
2973 3116 3.426568 GGTGAGTGAGCAAGCGGC 61.427 66.667 0.00 0.00 45.30 6.53
2982 3125 3.583383 GCAAGCGGCTCATCTTGT 58.417 55.556 1.45 0.00 41.15 3.16
2984 3127 0.375106 GCAAGCGGCTCATCTTGTAC 59.625 55.000 1.45 0.00 41.15 2.90
3014 3163 7.990541 TTTGAGAATTGTCACAAACATGAAG 57.009 32.000 4.50 0.00 38.79 3.02
3018 3180 9.065798 TGAGAATTGTCACAAACATGAAGATTA 57.934 29.630 0.23 0.00 37.82 1.75
3039 3201 2.596631 CCCACTTGCTGCTGTGCT 60.597 61.111 16.66 0.00 33.26 4.40
3040 3202 2.643272 CCACTTGCTGCTGTGCTG 59.357 61.111 16.66 5.13 33.26 4.41
3041 3203 2.191513 CCACTTGCTGCTGTGCTGT 61.192 57.895 16.66 0.00 33.26 4.40
3042 3204 1.008881 CACTTGCTGCTGTGCTGTG 60.009 57.895 11.82 4.02 34.30 3.66
3043 3205 2.050351 CTTGCTGCTGTGCTGTGC 60.050 61.111 0.00 0.00 0.00 4.57
3053 3215 0.764890 TGTGCTGTGCCCTTTACTCT 59.235 50.000 0.00 0.00 0.00 3.24
3059 3221 3.744660 CTGTGCCCTTTACTCTTCTTGT 58.255 45.455 0.00 0.00 0.00 3.16
3137 3666 6.362283 GGCTATGTTACATGTTTTGTCAACAC 59.638 38.462 2.30 0.00 39.87 3.32
3166 3697 9.959721 TTTTTAGCCTTGATGATTACTCTAGTT 57.040 29.630 0.00 0.00 0.00 2.24
3211 3742 1.839424 AGCATTGCTACCTTTCACCC 58.161 50.000 10.00 0.00 36.99 4.61
3273 3804 0.821517 TCATTCTATCACGCACGGGT 59.178 50.000 0.00 0.00 0.00 5.28
3289 3820 2.290641 ACGGGTAATGAGTGCATTCCAA 60.291 45.455 6.77 0.00 43.43 3.53
3314 3845 2.099141 GCTTAGTGCACCATGACTGA 57.901 50.000 14.63 0.00 42.31 3.41
3315 3846 2.005451 GCTTAGTGCACCATGACTGAG 58.995 52.381 14.63 0.83 42.31 3.35
3316 3847 2.613977 GCTTAGTGCACCATGACTGAGT 60.614 50.000 14.63 0.00 42.31 3.41
3317 3848 2.749280 TAGTGCACCATGACTGAGTG 57.251 50.000 14.63 0.00 34.58 3.51
3333 3864 3.682696 TGAGTGCAAGCATCTTCTTGAT 58.317 40.909 7.60 0.00 44.61 2.57
3423 3989 7.377766 TGCTGTCTTCTAATTGGTTTACATC 57.622 36.000 0.00 0.00 0.00 3.06
3425 3991 6.312918 GCTGTCTTCTAATTGGTTTACATCGA 59.687 38.462 0.00 0.00 0.00 3.59
3426 3992 7.591006 TGTCTTCTAATTGGTTTACATCGAC 57.409 36.000 0.00 0.00 0.00 4.20
3427 3993 6.309494 TGTCTTCTAATTGGTTTACATCGACG 59.691 38.462 0.00 0.00 0.00 5.12
3429 3995 4.496360 TCTAATTGGTTTACATCGACGCA 58.504 39.130 0.00 0.00 0.00 5.24
3430 3996 5.113383 TCTAATTGGTTTACATCGACGCAT 58.887 37.500 0.00 0.00 0.00 4.73
3431 3997 3.673746 ATTGGTTTACATCGACGCATG 57.326 42.857 0.00 0.00 0.00 4.06
3433 3999 3.233684 TGGTTTACATCGACGCATGTA 57.766 42.857 12.89 12.89 38.07 2.29
3434 4000 3.787785 TGGTTTACATCGACGCATGTAT 58.212 40.909 15.83 0.00 38.71 2.29
3435 4001 4.934515 TGGTTTACATCGACGCATGTATA 58.065 39.130 15.83 11.10 38.71 1.47
3439 4005 7.274686 TGGTTTACATCGACGCATGTATATATG 59.725 37.037 15.83 5.16 38.71 1.78
3821 4387 3.058160 GCGCCAACTGCCAGTGAT 61.058 61.111 0.00 0.00 36.24 3.06
3822 4388 2.872557 CGCCAACTGCCAGTGATG 59.127 61.111 0.00 0.00 36.24 3.07
3823 4389 1.672030 CGCCAACTGCCAGTGATGA 60.672 57.895 0.00 0.00 36.24 2.92
3824 4390 1.878775 GCCAACTGCCAGTGATGAC 59.121 57.895 0.00 0.00 0.00 3.06
3825 4391 0.890542 GCCAACTGCCAGTGATGACA 60.891 55.000 0.00 0.00 0.00 3.58
3826 4392 1.608055 CCAACTGCCAGTGATGACAA 58.392 50.000 0.00 0.00 0.00 3.18
3827 4393 1.538512 CCAACTGCCAGTGATGACAAG 59.461 52.381 0.00 0.00 0.00 3.16
3828 4394 2.497138 CAACTGCCAGTGATGACAAGA 58.503 47.619 0.00 0.00 0.00 3.02
3829 4395 2.880268 CAACTGCCAGTGATGACAAGAA 59.120 45.455 0.00 0.00 0.00 2.52
3830 4396 2.498167 ACTGCCAGTGATGACAAGAAC 58.502 47.619 0.00 0.00 0.00 3.01
3831 4397 2.158769 ACTGCCAGTGATGACAAGAACA 60.159 45.455 0.00 0.00 0.00 3.18
3832 4398 2.221169 TGCCAGTGATGACAAGAACAC 58.779 47.619 0.00 0.00 0.00 3.32
3833 4399 1.537202 GCCAGTGATGACAAGAACACC 59.463 52.381 0.00 0.00 34.33 4.16
3834 4400 2.849942 CCAGTGATGACAAGAACACCA 58.150 47.619 0.00 0.00 34.33 4.17
3835 4401 2.549754 CCAGTGATGACAAGAACACCAC 59.450 50.000 0.00 0.00 32.47 4.16
3836 4402 2.549754 CAGTGATGACAAGAACACCACC 59.450 50.000 0.00 0.00 32.69 4.61
3837 4403 2.172505 AGTGATGACAAGAACACCACCA 59.827 45.455 0.00 0.00 32.69 4.17
3838 4404 3.149196 GTGATGACAAGAACACCACCAT 58.851 45.455 0.00 0.00 0.00 3.55
3839 4405 3.058016 GTGATGACAAGAACACCACCATG 60.058 47.826 0.00 0.00 0.00 3.66
3840 4406 3.181446 TGATGACAAGAACACCACCATGA 60.181 43.478 0.00 0.00 0.00 3.07
4012 4681 0.609957 CATGGCATGTGGTGTGGTCT 60.610 55.000 19.32 0.00 0.00 3.85
4013 4682 0.609957 ATGGCATGTGGTGTGGTCTG 60.610 55.000 0.00 0.00 0.00 3.51
4091 4760 6.440647 TGGTAGTAGATTCATTCACCTGTCTT 59.559 38.462 0.00 0.00 0.00 3.01
4100 4769 7.645058 TTCATTCACCTGTCTTTCTTTCTTT 57.355 32.000 0.00 0.00 0.00 2.52
4140 4809 3.055458 GGGGGACTCTCTCTTCTTTTCTG 60.055 52.174 0.00 0.00 0.00 3.02
4175 4844 4.948341 GGCTTAACCAAAGGAAAGGAAA 57.052 40.909 0.00 0.00 38.86 3.13
4176 4845 4.883083 GGCTTAACCAAAGGAAAGGAAAG 58.117 43.478 0.00 0.00 38.86 2.62
4177 4846 4.262463 GGCTTAACCAAAGGAAAGGAAAGG 60.262 45.833 0.00 0.00 38.86 3.11
4179 4848 3.414759 AACCAAAGGAAAGGAAAGGGT 57.585 42.857 0.00 0.00 0.00 4.34
4180 4849 3.414759 ACCAAAGGAAAGGAAAGGGTT 57.585 42.857 0.00 0.00 0.00 4.11
4181 4850 3.038280 ACCAAAGGAAAGGAAAGGGTTG 58.962 45.455 0.00 0.00 0.00 3.77
4182 4851 2.368548 CCAAAGGAAAGGAAAGGGTTGG 59.631 50.000 0.00 0.00 0.00 3.77
4183 4852 2.368548 CAAAGGAAAGGAAAGGGTTGGG 59.631 50.000 0.00 0.00 0.00 4.12
4184 4853 0.487325 AGGAAAGGAAAGGGTTGGGG 59.513 55.000 0.00 0.00 0.00 4.96
4185 4854 0.544357 GGAAAGGAAAGGGTTGGGGG 60.544 60.000 0.00 0.00 0.00 5.40
4186 4855 0.190069 GAAAGGAAAGGGTTGGGGGT 59.810 55.000 0.00 0.00 0.00 4.95
4187 4856 0.645496 AAAGGAAAGGGTTGGGGGTT 59.355 50.000 0.00 0.00 0.00 4.11
4195 4864 1.616091 GGGTTGGGGGTTCATGCATG 61.616 60.000 21.07 21.07 0.00 4.06
4279 4957 2.846206 ACTCCTTTGGATGCCACTATCA 59.154 45.455 0.00 0.00 30.78 2.15
4280 4958 3.209410 CTCCTTTGGATGCCACTATCAC 58.791 50.000 0.00 0.00 30.78 3.06
4311 4991 1.787012 GAAAGCAGCAATGGGTTGTG 58.213 50.000 0.00 0.00 37.65 3.33
4313 4993 0.390124 AAGCAGCAATGGGTTGTGTG 59.610 50.000 0.00 0.00 37.65 3.82
4326 5006 0.250793 TTGTGTGTGTCCCGTTGAGT 59.749 50.000 0.00 0.00 0.00 3.41
4328 5008 1.689813 TGTGTGTGTCCCGTTGAGTAT 59.310 47.619 0.00 0.00 0.00 2.12
4337 5017 2.901192 TCCCGTTGAGTATTCTGGAACA 59.099 45.455 0.00 0.00 0.00 3.18
4339 5019 3.000727 CCGTTGAGTATTCTGGAACACC 58.999 50.000 0.00 0.00 0.00 4.16
4343 5023 2.894765 TGAGTATTCTGGAACACCGTGA 59.105 45.455 5.28 0.00 0.00 4.35
4345 5025 3.926616 AGTATTCTGGAACACCGTGAAG 58.073 45.455 5.28 0.00 0.00 3.02
4351 5031 1.760613 TGGAACACCGTGAAGTCTTCT 59.239 47.619 13.67 0.00 0.00 2.85
4365 5049 0.811219 TCTTCTTCATGATGGCGCCG 60.811 55.000 23.90 6.99 0.00 6.46
4368 5052 0.811219 TCTTCATGATGGCGCCGAAG 60.811 55.000 26.09 26.09 35.49 3.79
4372 5056 1.146041 ATGATGGCGCCGAAGCTAA 59.854 52.632 23.90 1.41 36.60 3.09
4376 5060 0.958382 ATGGCGCCGAAGCTAACAAA 60.958 50.000 23.90 0.00 36.60 2.83
4377 5061 1.134694 GGCGCCGAAGCTAACAAAG 59.865 57.895 12.58 0.00 36.60 2.77
4378 5062 1.574702 GGCGCCGAAGCTAACAAAGT 61.575 55.000 12.58 0.00 36.60 2.66
4379 5063 0.452784 GCGCCGAAGCTAACAAAGTG 60.453 55.000 0.00 0.00 36.60 3.16
4380 5064 0.865769 CGCCGAAGCTAACAAAGTGT 59.134 50.000 0.00 0.00 36.60 3.55
4382 5066 2.661979 CGCCGAAGCTAACAAAGTGTTC 60.662 50.000 0.00 0.00 40.22 3.18
4384 5068 3.848554 GCCGAAGCTAACAAAGTGTTCAC 60.849 47.826 0.00 0.00 40.22 3.18
4387 5071 4.024048 CGAAGCTAACAAAGTGTTCACCAT 60.024 41.667 0.00 0.00 40.22 3.55
4388 5072 4.836125 AGCTAACAAAGTGTTCACCATG 57.164 40.909 0.00 2.35 40.22 3.66
4392 5076 5.183140 GCTAACAAAGTGTTCACCATGGTAT 59.817 40.000 19.28 0.00 40.22 2.73
4395 5079 3.973206 AAGTGTTCACCATGGTATCGA 57.027 42.857 19.28 8.33 0.00 3.59
4429 6773 3.843893 TGAAGATAGCAAGGCAGCATA 57.156 42.857 4.78 0.00 36.85 3.14
4461 6805 7.088905 CAGAGGTTGAAGGAAATGATCTTTTG 58.911 38.462 11.03 0.00 0.00 2.44
4466 6810 4.021192 TGAAGGAAATGATCTTTTGTGGGC 60.021 41.667 11.03 0.00 0.00 5.36
4591 9999 1.472376 GGAGAGGAAGAAGGATGTGCG 60.472 57.143 0.00 0.00 0.00 5.34
4594 10002 0.036010 AGGAAGAAGGATGTGCGGTG 60.036 55.000 0.00 0.00 0.00 4.94
4624 10032 1.971505 CTGCCTCCATTGACCGCCTA 61.972 60.000 0.00 0.00 0.00 3.93
4630 10038 1.748493 TCCATTGACCGCCTAATTTGC 59.252 47.619 0.00 0.00 0.00 3.68
4638 10046 2.092646 ACCGCCTAATTTGCCTGTCATA 60.093 45.455 0.00 0.00 0.00 2.15
4639 10047 2.948979 CCGCCTAATTTGCCTGTCATAA 59.051 45.455 0.00 0.00 0.00 1.90
4640 10048 3.003689 CCGCCTAATTTGCCTGTCATAAG 59.996 47.826 0.00 0.00 0.00 1.73
4644 10052 4.641989 CCTAATTTGCCTGTCATAAGCAGT 59.358 41.667 0.00 0.00 37.89 4.40
4646 10054 5.567138 AATTTGCCTGTCATAAGCAGTAC 57.433 39.130 0.00 0.00 37.89 2.73
4650 10058 3.181490 TGCCTGTCATAAGCAGTACGTAG 60.181 47.826 0.00 0.00 32.41 3.51
4660 10068 7.447545 TCATAAGCAGTACGTAGATAATCTGGT 59.552 37.037 0.00 1.24 35.63 4.00
4661 10069 5.692613 AGCAGTACGTAGATAATCTGGTC 57.307 43.478 0.00 0.00 0.00 4.02
4663 10071 5.239744 AGCAGTACGTAGATAATCTGGTCTG 59.760 44.000 0.00 0.00 0.00 3.51
4664 10072 5.238868 GCAGTACGTAGATAATCTGGTCTGA 59.761 44.000 0.00 0.00 0.00 3.27
4665 10073 6.238676 GCAGTACGTAGATAATCTGGTCTGAA 60.239 42.308 0.00 0.00 0.00 3.02
4669 10077 7.113658 ACGTAGATAATCTGGTCTGAATTGT 57.886 36.000 0.00 0.00 0.00 2.71
4684 10092 5.584251 TCTGAATTGTTTGTTTTCCAAAGCC 59.416 36.000 0.00 0.00 43.52 4.35
4685 10093 5.248640 TGAATTGTTTGTTTTCCAAAGCCA 58.751 33.333 0.00 0.00 43.52 4.75
4687 10095 6.038050 TGAATTGTTTGTTTTCCAAAGCCATC 59.962 34.615 0.00 0.00 43.52 3.51
4688 10096 4.751767 TGTTTGTTTTCCAAAGCCATCT 57.248 36.364 0.00 0.00 43.52 2.90
4690 10098 4.405358 TGTTTGTTTTCCAAAGCCATCTCT 59.595 37.500 0.00 0.00 43.52 3.10
4691 10099 4.589216 TTGTTTTCCAAAGCCATCTCTG 57.411 40.909 0.00 0.00 0.00 3.35
4692 10100 2.297033 TGTTTTCCAAAGCCATCTCTGC 59.703 45.455 0.00 0.00 0.00 4.26
4695 10103 2.117156 CCAAAGCCATCTCTGCCCG 61.117 63.158 0.00 0.00 0.00 6.13
4696 10104 1.377725 CAAAGCCATCTCTGCCCGT 60.378 57.895 0.00 0.00 0.00 5.28
4697 10105 1.377725 AAAGCCATCTCTGCCCGTG 60.378 57.895 0.00 0.00 0.00 4.94
4735 10143 1.334869 CTGCTTTGTTTGTCCGAGCTT 59.665 47.619 0.00 0.00 34.56 3.74
4785 10208 3.427098 CGCAATCAAATGTGCATGTCTCT 60.427 43.478 0.00 0.00 40.94 3.10
4804 10228 1.923204 CTCTGTGCGTGTAAGATGCTC 59.077 52.381 0.00 0.00 37.49 4.26
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 2.203351 CCTAAGGATTGGGCCGCC 60.203 66.667 0.00 0.00 40.87 6.13
9 10 6.321435 GGGTCACTAAAATTCCTAAGGATTGG 59.679 42.308 0.00 0.00 0.00 3.16
10 11 6.889722 TGGGTCACTAAAATTCCTAAGGATTG 59.110 38.462 0.00 0.00 0.00 2.67
11 12 7.039722 TGGGTCACTAAAATTCCTAAGGATT 57.960 36.000 0.00 0.00 0.00 3.01
12 13 6.652205 TGGGTCACTAAAATTCCTAAGGAT 57.348 37.500 0.00 0.00 0.00 3.24
13 14 6.457159 TTGGGTCACTAAAATTCCTAAGGA 57.543 37.500 0.00 0.00 0.00 3.36
14 15 6.321435 GGATTGGGTCACTAAAATTCCTAAGG 59.679 42.308 0.00 0.00 0.00 2.69
15 16 7.067494 CAGGATTGGGTCACTAAAATTCCTAAG 59.933 40.741 0.00 0.00 0.00 2.18
16 17 6.889722 CAGGATTGGGTCACTAAAATTCCTAA 59.110 38.462 0.00 0.00 0.00 2.69
17 18 6.011981 ACAGGATTGGGTCACTAAAATTCCTA 60.012 38.462 0.00 0.00 0.00 2.94
18 19 5.222337 ACAGGATTGGGTCACTAAAATTCCT 60.222 40.000 0.00 0.00 0.00 3.36
19 20 5.016831 ACAGGATTGGGTCACTAAAATTCC 58.983 41.667 0.00 0.00 0.00 3.01
20 21 5.710099 TCACAGGATTGGGTCACTAAAATTC 59.290 40.000 0.00 0.00 0.00 2.17
21 22 5.640147 TCACAGGATTGGGTCACTAAAATT 58.360 37.500 0.00 0.00 0.00 1.82
22 23 5.255397 TCACAGGATTGGGTCACTAAAAT 57.745 39.130 0.00 0.00 0.00 1.82
23 24 4.715534 TCACAGGATTGGGTCACTAAAA 57.284 40.909 0.00 0.00 0.00 1.52
24 25 4.324254 GGATCACAGGATTGGGTCACTAAA 60.324 45.833 0.00 0.00 32.67 1.85
25 26 3.199946 GGATCACAGGATTGGGTCACTAA 59.800 47.826 0.00 0.00 32.67 2.24
26 27 2.771943 GGATCACAGGATTGGGTCACTA 59.228 50.000 0.00 0.00 32.67 2.74
27 28 1.561542 GGATCACAGGATTGGGTCACT 59.438 52.381 0.00 0.00 32.67 3.41
28 29 1.281867 TGGATCACAGGATTGGGTCAC 59.718 52.381 0.00 0.00 32.67 3.67
29 30 1.667595 TGGATCACAGGATTGGGTCA 58.332 50.000 0.00 0.00 32.67 4.02
30 31 2.806945 TTGGATCACAGGATTGGGTC 57.193 50.000 0.00 0.00 32.67 4.46
31 32 3.368248 CATTTGGATCACAGGATTGGGT 58.632 45.455 0.00 0.00 32.67 4.51
32 33 2.101917 GCATTTGGATCACAGGATTGGG 59.898 50.000 0.00 0.00 32.67 4.12
33 34 2.761767 TGCATTTGGATCACAGGATTGG 59.238 45.455 0.00 0.00 32.67 3.16
34 35 4.665833 ATGCATTTGGATCACAGGATTG 57.334 40.909 0.00 0.00 32.67 2.67
35 36 4.100498 GGAATGCATTTGGATCACAGGATT 59.900 41.667 14.33 0.00 32.67 3.01
36 37 3.640029 GGAATGCATTTGGATCACAGGAT 59.360 43.478 14.33 0.00 36.13 3.24
37 38 3.025978 GGAATGCATTTGGATCACAGGA 58.974 45.455 14.33 0.00 0.00 3.86
38 39 2.761767 TGGAATGCATTTGGATCACAGG 59.238 45.455 14.33 0.00 0.00 4.00
39 40 4.665833 ATGGAATGCATTTGGATCACAG 57.334 40.909 14.33 0.00 0.00 3.66
40 41 4.585581 CCTATGGAATGCATTTGGATCACA 59.414 41.667 14.33 5.17 0.00 3.58
41 42 4.828939 TCCTATGGAATGCATTTGGATCAC 59.171 41.667 14.33 0.00 0.00 3.06
42 43 5.064314 TCCTATGGAATGCATTTGGATCA 57.936 39.130 14.33 7.90 0.00 2.92
43 44 6.183360 TGTTTCCTATGGAATGCATTTGGATC 60.183 38.462 14.33 0.00 41.71 3.36
44 45 5.662208 TGTTTCCTATGGAATGCATTTGGAT 59.338 36.000 14.33 8.47 41.71 3.41
45 46 5.022122 TGTTTCCTATGGAATGCATTTGGA 58.978 37.500 14.33 12.85 41.71 3.53
46 47 5.341872 TGTTTCCTATGGAATGCATTTGG 57.658 39.130 14.33 10.89 41.71 3.28
47 48 6.480981 GGATTGTTTCCTATGGAATGCATTTG 59.519 38.462 14.33 2.35 41.71 2.32
48 49 6.585416 GGATTGTTTCCTATGGAATGCATTT 58.415 36.000 14.33 0.00 41.71 2.32
49 50 6.165700 GGATTGTTTCCTATGGAATGCATT 57.834 37.500 12.83 12.83 41.71 3.56
50 51 5.796424 GGATTGTTTCCTATGGAATGCAT 57.204 39.130 0.00 0.00 41.71 3.96
62 63 7.014326 GGGATATCAAACCTTAGGATTGTTTCC 59.986 40.741 18.53 19.47 45.85 3.13
63 64 7.255139 CGGGATATCAAACCTTAGGATTGTTTC 60.255 40.741 18.53 13.64 36.91 2.78
64 65 6.546034 CGGGATATCAAACCTTAGGATTGTTT 59.454 38.462 18.53 11.32 36.91 2.83
65 66 6.062095 CGGGATATCAAACCTTAGGATTGTT 58.938 40.000 18.53 13.77 36.91 2.83
66 67 5.132144 ACGGGATATCAAACCTTAGGATTGT 59.868 40.000 18.53 10.20 36.91 2.71
67 68 5.470098 CACGGGATATCAAACCTTAGGATTG 59.530 44.000 14.11 14.11 36.91 2.67
68 69 5.368523 TCACGGGATATCAAACCTTAGGATT 59.631 40.000 4.77 0.00 0.00 3.01
69 70 4.905456 TCACGGGATATCAAACCTTAGGAT 59.095 41.667 4.77 0.00 0.00 3.24
70 71 4.291792 TCACGGGATATCAAACCTTAGGA 58.708 43.478 4.77 0.00 0.00 2.94
71 72 4.344102 TCTCACGGGATATCAAACCTTAGG 59.656 45.833 4.83 0.00 0.00 2.69
72 73 5.531122 TCTCACGGGATATCAAACCTTAG 57.469 43.478 4.83 0.00 0.00 2.18
73 74 5.943349 TTCTCACGGGATATCAAACCTTA 57.057 39.130 4.83 0.00 0.00 2.69
74 75 4.837093 TTCTCACGGGATATCAAACCTT 57.163 40.909 4.83 0.00 0.00 3.50
75 76 4.202367 GGATTCTCACGGGATATCAAACCT 60.202 45.833 4.83 0.00 0.00 3.50
76 77 4.065789 GGATTCTCACGGGATATCAAACC 58.934 47.826 4.83 0.00 0.00 3.27
77 78 4.752101 CAGGATTCTCACGGGATATCAAAC 59.248 45.833 4.83 0.00 0.00 2.93
78 79 4.408921 ACAGGATTCTCACGGGATATCAAA 59.591 41.667 4.83 0.00 0.00 2.69
79 80 3.967326 ACAGGATTCTCACGGGATATCAA 59.033 43.478 4.83 0.00 0.00 2.57
80 81 3.576861 ACAGGATTCTCACGGGATATCA 58.423 45.455 4.83 0.00 0.00 2.15
81 82 5.723672 TTACAGGATTCTCACGGGATATC 57.276 43.478 0.00 0.00 0.00 1.63
82 83 6.494666 TTTTACAGGATTCTCACGGGATAT 57.505 37.500 0.00 0.00 0.00 1.63
83 84 5.943349 TTTTACAGGATTCTCACGGGATA 57.057 39.130 0.00 0.00 0.00 2.59
84 85 4.837093 TTTTACAGGATTCTCACGGGAT 57.163 40.909 0.00 0.00 0.00 3.85
85 86 4.627284 TTTTTACAGGATTCTCACGGGA 57.373 40.909 0.00 0.00 0.00 5.14
86 87 5.186198 AGATTTTTACAGGATTCTCACGGG 58.814 41.667 0.00 0.00 0.00 5.28
87 88 6.183360 GGAAGATTTTTACAGGATTCTCACGG 60.183 42.308 0.00 0.00 0.00 4.94
88 89 6.371548 TGGAAGATTTTTACAGGATTCTCACG 59.628 38.462 0.00 0.00 0.00 4.35
89 90 7.687941 TGGAAGATTTTTACAGGATTCTCAC 57.312 36.000 0.00 0.00 0.00 3.51
90 91 8.884124 ATTGGAAGATTTTTACAGGATTCTCA 57.116 30.769 0.00 0.00 0.00 3.27
91 92 8.409371 GGATTGGAAGATTTTTACAGGATTCTC 58.591 37.037 0.00 0.00 0.00 2.87
92 93 7.895429 TGGATTGGAAGATTTTTACAGGATTCT 59.105 33.333 0.00 0.00 0.00 2.40
93 94 8.066612 TGGATTGGAAGATTTTTACAGGATTC 57.933 34.615 0.00 0.00 0.00 2.52
94 95 8.434589 TTGGATTGGAAGATTTTTACAGGATT 57.565 30.769 0.00 0.00 0.00 3.01
95 96 8.434589 TTTGGATTGGAAGATTTTTACAGGAT 57.565 30.769 0.00 0.00 0.00 3.24
96 97 7.847711 TTTGGATTGGAAGATTTTTACAGGA 57.152 32.000 0.00 0.00 0.00 3.86
97 98 8.900983 TTTTTGGATTGGAAGATTTTTACAGG 57.099 30.769 0.00 0.00 0.00 4.00
119 120 2.597578 ATCCACCCTAACGGCTTTTT 57.402 45.000 0.00 0.00 33.26 1.94
120 121 3.201266 TCATATCCACCCTAACGGCTTTT 59.799 43.478 0.00 0.00 33.26 2.27
121 122 2.775384 TCATATCCACCCTAACGGCTTT 59.225 45.455 0.00 0.00 33.26 3.51
122 123 2.368875 CTCATATCCACCCTAACGGCTT 59.631 50.000 0.00 0.00 33.26 4.35
123 124 1.971357 CTCATATCCACCCTAACGGCT 59.029 52.381 0.00 0.00 33.26 5.52
124 125 1.002087 CCTCATATCCACCCTAACGGC 59.998 57.143 0.00 0.00 33.26 5.68
125 126 1.623811 CCCTCATATCCACCCTAACGG 59.376 57.143 0.00 0.00 37.81 4.44
126 127 1.623811 CCCCTCATATCCACCCTAACG 59.376 57.143 0.00 0.00 0.00 3.18
127 128 1.351350 GCCCCTCATATCCACCCTAAC 59.649 57.143 0.00 0.00 0.00 2.34
128 129 1.742308 GCCCCTCATATCCACCCTAA 58.258 55.000 0.00 0.00 0.00 2.69
129 130 0.544357 CGCCCCTCATATCCACCCTA 60.544 60.000 0.00 0.00 0.00 3.53
130 131 1.843376 CGCCCCTCATATCCACCCT 60.843 63.158 0.00 0.00 0.00 4.34
131 132 2.750350 CGCCCCTCATATCCACCC 59.250 66.667 0.00 0.00 0.00 4.61
132 133 2.032681 GCGCCCCTCATATCCACC 59.967 66.667 0.00 0.00 0.00 4.61
133 134 2.032681 GGCGCCCCTCATATCCAC 59.967 66.667 18.11 0.00 0.00 4.02
134 135 3.625897 CGGCGCCCCTCATATCCA 61.626 66.667 23.46 0.00 0.00 3.41
135 136 2.579684 GATCGGCGCCCCTCATATCC 62.580 65.000 23.46 0.00 0.00 2.59
136 137 1.153549 GATCGGCGCCCCTCATATC 60.154 63.158 23.46 10.49 0.00 1.63
137 138 1.892819 CTGATCGGCGCCCCTCATAT 61.893 60.000 23.46 4.74 0.00 1.78
138 139 2.523168 TGATCGGCGCCCCTCATA 60.523 61.111 23.46 0.00 0.00 2.15
139 140 3.933722 CTGATCGGCGCCCCTCAT 61.934 66.667 23.46 7.78 0.00 2.90
151 152 3.508840 CAAACGCCCGGGCTGATC 61.509 66.667 41.01 14.75 39.32 2.92
152 153 3.344137 ATCAAACGCCCGGGCTGAT 62.344 57.895 41.01 36.22 39.32 2.90
153 154 4.028490 ATCAAACGCCCGGGCTGA 62.028 61.111 41.01 35.74 39.32 4.26
154 155 3.814268 CATCAAACGCCCGGGCTG 61.814 66.667 41.01 33.95 39.32 4.85
157 158 3.508840 GAGCATCAAACGCCCGGG 61.509 66.667 19.09 19.09 33.17 5.73
158 159 3.864686 CGAGCATCAAACGCCCGG 61.865 66.667 0.00 0.00 33.17 5.73
159 160 3.083600 GACGAGCATCAAACGCCCG 62.084 63.158 0.00 0.00 33.17 6.13
160 161 1.741770 AGACGAGCATCAAACGCCC 60.742 57.895 0.00 0.00 33.17 6.13
161 162 1.014044 TCAGACGAGCATCAAACGCC 61.014 55.000 0.00 0.00 33.17 5.68
162 163 0.368227 CTCAGACGAGCATCAAACGC 59.632 55.000 0.00 0.00 33.17 4.84
163 164 0.994995 CCTCAGACGAGCATCAAACG 59.005 55.000 0.00 0.00 38.00 3.60
164 165 0.723981 GCCTCAGACGAGCATCAAAC 59.276 55.000 0.00 0.00 38.00 2.93
165 166 0.610174 AGCCTCAGACGAGCATCAAA 59.390 50.000 0.00 0.00 38.00 2.69
166 167 0.174389 GAGCCTCAGACGAGCATCAA 59.826 55.000 0.00 0.00 38.00 2.57
167 168 0.967380 TGAGCCTCAGACGAGCATCA 60.967 55.000 0.00 0.00 38.00 3.07
168 169 0.174389 TTGAGCCTCAGACGAGCATC 59.826 55.000 0.00 0.00 38.00 3.91
169 170 0.610174 TTTGAGCCTCAGACGAGCAT 59.390 50.000 0.00 0.00 38.00 3.79
170 171 0.392706 TTTTGAGCCTCAGACGAGCA 59.607 50.000 0.00 0.00 38.00 4.26
171 172 1.512926 TTTTTGAGCCTCAGACGAGC 58.487 50.000 0.00 0.00 38.00 5.03
188 189 3.502211 GTCACTGACCGATCACCATTTTT 59.498 43.478 0.00 0.00 0.00 1.94
189 190 3.074412 GTCACTGACCGATCACCATTTT 58.926 45.455 0.00 0.00 0.00 1.82
190 191 2.615493 GGTCACTGACCGATCACCATTT 60.615 50.000 12.59 0.00 43.14 2.32
191 192 1.066143 GGTCACTGACCGATCACCATT 60.066 52.381 12.59 0.00 43.14 3.16
192 193 0.537188 GGTCACTGACCGATCACCAT 59.463 55.000 12.59 0.00 43.14 3.55
193 194 1.972198 GGTCACTGACCGATCACCA 59.028 57.895 12.59 0.00 43.14 4.17
194 195 4.913126 GGTCACTGACCGATCACC 57.087 61.111 12.59 0.00 43.14 4.02
202 203 4.736896 GCCCGTCCGGTCACTGAC 62.737 72.222 0.00 0.00 0.00 3.51
218 219 3.508840 CTCAAATGTCCGGGCGGC 61.509 66.667 0.00 0.00 34.68 6.53
219 220 2.824041 CCTCAAATGTCCGGGCGG 60.824 66.667 0.00 0.00 0.00 6.13
220 221 3.508840 GCCTCAAATGTCCGGGCG 61.509 66.667 0.00 0.00 33.30 6.13
221 222 3.140814 GGCCTCAAATGTCCGGGC 61.141 66.667 0.00 0.00 41.80 6.13
222 223 2.608970 ATCGGCCTCAAATGTCCGGG 62.609 60.000 0.00 0.00 41.98 5.73
223 224 0.748005 AATCGGCCTCAAATGTCCGG 60.748 55.000 0.00 0.00 41.98 5.14
224 225 1.094785 AAATCGGCCTCAAATGTCCG 58.905 50.000 0.00 0.00 42.96 4.79
225 226 2.091541 TCAAATCGGCCTCAAATGTCC 58.908 47.619 0.00 0.00 0.00 4.02
226 227 3.009723 TCTCAAATCGGCCTCAAATGTC 58.990 45.455 0.00 0.00 0.00 3.06
227 228 2.749621 GTCTCAAATCGGCCTCAAATGT 59.250 45.455 0.00 0.00 0.00 2.71
228 229 2.749076 TGTCTCAAATCGGCCTCAAATG 59.251 45.455 0.00 0.00 0.00 2.32
229 230 2.749621 GTGTCTCAAATCGGCCTCAAAT 59.250 45.455 0.00 0.00 0.00 2.32
230 231 2.151202 GTGTCTCAAATCGGCCTCAAA 58.849 47.619 0.00 0.00 0.00 2.69
231 232 1.610624 GGTGTCTCAAATCGGCCTCAA 60.611 52.381 0.00 0.00 0.00 3.02
232 233 0.036388 GGTGTCTCAAATCGGCCTCA 60.036 55.000 0.00 0.00 0.00 3.86
233 234 0.744771 GGGTGTCTCAAATCGGCCTC 60.745 60.000 0.00 0.00 0.00 4.70
234 235 1.299976 GGGTGTCTCAAATCGGCCT 59.700 57.895 0.00 0.00 0.00 5.19
235 236 2.106683 CGGGTGTCTCAAATCGGCC 61.107 63.158 0.00 0.00 0.00 6.13
236 237 2.106683 CCGGGTGTCTCAAATCGGC 61.107 63.158 0.00 0.00 0.00 5.54
237 238 2.106683 GCCGGGTGTCTCAAATCGG 61.107 63.158 2.18 0.00 40.33 4.18
238 239 1.079127 AGCCGGGTGTCTCAAATCG 60.079 57.895 4.72 0.00 0.00 3.34
239 240 0.321653 ACAGCCGGGTGTCTCAAATC 60.322 55.000 32.82 0.00 0.00 2.17
240 241 0.981183 TACAGCCGGGTGTCTCAAAT 59.019 50.000 40.28 18.55 31.46 2.32
241 242 0.320374 CTACAGCCGGGTGTCTCAAA 59.680 55.000 40.28 22.82 31.46 2.69
242 243 0.541063 TCTACAGCCGGGTGTCTCAA 60.541 55.000 40.28 23.20 31.46 3.02
243 244 0.324368 ATCTACAGCCGGGTGTCTCA 60.324 55.000 40.28 25.39 31.46 3.27
244 245 0.103208 CATCTACAGCCGGGTGTCTC 59.897 60.000 40.28 4.13 31.46 3.36
245 246 1.961180 GCATCTACAGCCGGGTGTCT 61.961 60.000 40.28 23.83 31.46 3.41
246 247 1.521681 GCATCTACAGCCGGGTGTC 60.522 63.158 40.28 23.06 31.46 3.67
247 248 1.961180 GAGCATCTACAGCCGGGTGT 61.961 60.000 38.36 38.36 34.21 4.16
248 249 1.227380 GAGCATCTACAGCCGGGTG 60.227 63.158 31.30 31.30 0.00 4.61
249 250 3.221222 GAGCATCTACAGCCGGGT 58.779 61.111 0.00 0.00 0.00 5.28
284 285 3.524095 TCCCCAATGCAGAAAAGAGAA 57.476 42.857 0.00 0.00 0.00 2.87
285 286 3.524095 TTCCCCAATGCAGAAAAGAGA 57.476 42.857 0.00 0.00 0.00 3.10
292 293 1.133199 ACCTTGTTTCCCCAATGCAGA 60.133 47.619 0.00 0.00 0.00 4.26
297 298 3.973305 ACATCAAACCTTGTTTCCCCAAT 59.027 39.130 0.00 0.00 0.00 3.16
301 302 2.365293 AGCACATCAAACCTTGTTTCCC 59.635 45.455 0.00 0.00 0.00 3.97
314 315 6.341316 GTTGAAGTAGAGGAATAGCACATCA 58.659 40.000 0.00 0.00 0.00 3.07
316 317 5.426833 AGGTTGAAGTAGAGGAATAGCACAT 59.573 40.000 0.00 0.00 0.00 3.21
318 319 5.346181 AGGTTGAAGTAGAGGAATAGCAC 57.654 43.478 0.00 0.00 0.00 4.40
327 328 8.947115 CCCTAAAATACAAAGGTTGAAGTAGAG 58.053 37.037 0.00 0.00 0.00 2.43
328 329 8.442374 ACCCTAAAATACAAAGGTTGAAGTAGA 58.558 33.333 0.00 0.00 0.00 2.59
331 332 7.907841 AACCCTAAAATACAAAGGTTGAAGT 57.092 32.000 0.00 0.00 36.28 3.01
334 335 6.463190 GCCAAACCCTAAAATACAAAGGTTGA 60.463 38.462 0.00 0.00 37.65 3.18
365 366 6.456988 GGGCGCAATATACTTGATATGCTTAC 60.457 42.308 10.83 0.00 30.67 2.34
366 367 5.584649 GGGCGCAATATACTTGATATGCTTA 59.415 40.000 10.83 0.00 30.67 3.09
388 389 0.379669 GACATCTGCTTTGCGATGGG 59.620 55.000 19.58 5.46 40.72 4.00
392 393 5.565592 AAAATATGACATCTGCTTTGCGA 57.434 34.783 0.00 0.00 0.00 5.10
393 394 5.801444 TGAAAAATATGACATCTGCTTTGCG 59.199 36.000 0.00 0.00 0.00 4.85
412 413 7.543756 GCAGTAGCCTATATTTTTGGTGAAAA 58.456 34.615 0.00 0.00 36.87 2.29
438 439 9.976255 TGTTCGATGAGTAAAATAAAATTACCG 57.024 29.630 0.00 0.00 34.50 4.02
470 495 4.528076 TGTGGGCCCTAGCAATTATTTA 57.472 40.909 25.70 0.00 42.56 1.40
475 500 1.689258 GGAATGTGGGCCCTAGCAATT 60.689 52.381 25.70 14.76 42.56 2.32
476 501 0.106015 GGAATGTGGGCCCTAGCAAT 60.106 55.000 25.70 12.48 42.56 3.56
478 503 1.925285 CTGGAATGTGGGCCCTAGCA 61.925 60.000 25.70 19.32 42.56 3.49
482 507 2.765969 CACTGGAATGTGGGCCCT 59.234 61.111 25.70 0.66 34.56 5.19
590 621 2.113910 TTTTCGAGCGTGGCTTTTTC 57.886 45.000 0.00 0.00 39.88 2.29
650 681 3.131709 TCTTTCTTTGCTGAGGGAGTG 57.868 47.619 0.00 0.00 0.00 3.51
651 682 3.864789 TTCTTTCTTTGCTGAGGGAGT 57.135 42.857 0.00 0.00 0.00 3.85
652 683 4.339247 TGTTTTCTTTCTTTGCTGAGGGAG 59.661 41.667 0.00 0.00 0.00 4.30
653 684 4.277476 TGTTTTCTTTCTTTGCTGAGGGA 58.723 39.130 0.00 0.00 0.00 4.20
656 687 6.183360 GGTGTTTGTTTTCTTTCTTTGCTGAG 60.183 38.462 0.00 0.00 0.00 3.35
657 688 5.637387 GGTGTTTGTTTTCTTTCTTTGCTGA 59.363 36.000 0.00 0.00 0.00 4.26
658 689 5.444481 CGGTGTTTGTTTTCTTTCTTTGCTG 60.444 40.000 0.00 0.00 0.00 4.41
659 690 4.625311 CGGTGTTTGTTTTCTTTCTTTGCT 59.375 37.500 0.00 0.00 0.00 3.91
660 691 4.723754 GCGGTGTTTGTTTTCTTTCTTTGC 60.724 41.667 0.00 0.00 0.00 3.68
662 693 4.561105 TGCGGTGTTTGTTTTCTTTCTTT 58.439 34.783 0.00 0.00 0.00 2.52
664 695 3.192633 ACTGCGGTGTTTGTTTTCTTTCT 59.807 39.130 0.00 0.00 0.00 2.52
665 696 3.303229 CACTGCGGTGTTTGTTTTCTTTC 59.697 43.478 17.96 0.00 38.54 2.62
784 828 4.803426 GTGCGGAGTGGAGCGGAG 62.803 72.222 0.00 0.00 35.87 4.63
804 848 2.093537 TTGAAACAATGCGGGGGTGC 62.094 55.000 0.00 0.00 0.00 5.01
894 938 1.423921 TCAAGAACCAAGAACCCCCTC 59.576 52.381 0.00 0.00 0.00 4.30
906 956 1.204941 TCGGCTAGAGCTTCAAGAACC 59.795 52.381 0.81 0.00 41.70 3.62
907 957 2.656560 TCGGCTAGAGCTTCAAGAAC 57.343 50.000 0.81 0.00 41.70 3.01
944 994 0.192315 AGCCCTTCTCTCCTATCCCC 59.808 60.000 0.00 0.00 0.00 4.81
945 995 2.558800 CCTAGCCCTTCTCTCCTATCCC 60.559 59.091 0.00 0.00 0.00 3.85
946 996 2.558800 CCCTAGCCCTTCTCTCCTATCC 60.559 59.091 0.00 0.00 0.00 2.59
947 997 2.380590 TCCCTAGCCCTTCTCTCCTATC 59.619 54.545 0.00 0.00 0.00 2.08
948 998 2.381961 CTCCCTAGCCCTTCTCTCCTAT 59.618 54.545 0.00 0.00 0.00 2.57
949 999 1.783979 CTCCCTAGCCCTTCTCTCCTA 59.216 57.143 0.00 0.00 0.00 2.94
950 1000 0.560688 CTCCCTAGCCCTTCTCTCCT 59.439 60.000 0.00 0.00 0.00 3.69
952 1002 2.436521 GCTCCCTAGCCCTTCTCTC 58.563 63.158 0.00 0.00 43.40 3.20
953 1003 4.718143 GCTCCCTAGCCCTTCTCT 57.282 61.111 0.00 0.00 43.40 3.10
962 1012 1.830408 CACTCCTCCGGCTCCCTAG 60.830 68.421 0.00 0.00 0.00 3.02
963 1013 2.279073 CACTCCTCCGGCTCCCTA 59.721 66.667 0.00 0.00 0.00 3.53
964 1014 3.670629 CTCACTCCTCCGGCTCCCT 62.671 68.421 0.00 0.00 0.00 4.20
966 1016 3.844090 GCTCACTCCTCCGGCTCC 61.844 72.222 0.00 0.00 0.00 4.70
967 1017 4.200283 CGCTCACTCCTCCGGCTC 62.200 72.222 0.00 0.00 0.00 4.70
968 1018 4.742649 TCGCTCACTCCTCCGGCT 62.743 66.667 0.00 0.00 0.00 5.52
969 1019 3.708220 CTTCGCTCACTCCTCCGGC 62.708 68.421 0.00 0.00 0.00 6.13
970 1020 2.492090 CTTCGCTCACTCCTCCGG 59.508 66.667 0.00 0.00 0.00 5.14
971 1021 1.999071 CTCCTTCGCTCACTCCTCCG 61.999 65.000 0.00 0.00 0.00 4.63
979 1033 1.608717 GCTTCCCTCTCCTTCGCTCA 61.609 60.000 0.00 0.00 0.00 4.26
983 1037 0.179062 CATGGCTTCCCTCTCCTTCG 60.179 60.000 0.00 0.00 0.00 3.79
986 1040 2.381941 GCCATGGCTTCCCTCTCCT 61.382 63.158 29.98 0.00 38.26 3.69
1081 1147 4.101448 GAGGTGGCGGTGCATCCT 62.101 66.667 0.00 4.21 36.33 3.24
1177 1247 7.046652 TCAAATCTTGAGAAGAATAGCAGAGG 58.953 38.462 0.00 0.00 41.63 3.69
1178 1248 8.489990 TTCAAATCTTGAGAAGAATAGCAGAG 57.510 34.615 0.00 0.00 41.63 3.35
1220 1294 1.073923 GGCTTTGACCAGGAAGGAAGA 59.926 52.381 0.00 0.00 41.22 2.87
1241 1323 0.828022 TGAAACGGACACAGGACACT 59.172 50.000 0.00 0.00 0.00 3.55
1274 1356 0.463654 TCAATCTCGCCCAAATCCCG 60.464 55.000 0.00 0.00 0.00 5.14
1306 1390 1.060842 CGACTGGAGTAGACGAGAACG 59.939 57.143 0.00 0.00 45.29 3.95
1307 1391 1.202054 GCGACTGGAGTAGACGAGAAC 60.202 57.143 3.24 0.00 45.29 3.01
1312 1396 0.803117 TTGAGCGACTGGAGTAGACG 59.197 55.000 0.00 0.00 45.25 4.18
1314 1398 2.515854 ACTTTGAGCGACTGGAGTAGA 58.484 47.619 0.00 0.00 0.00 2.59
1542 1634 4.679905 GCAAAAGGACGCCAGTACTACTAT 60.680 45.833 0.00 0.00 41.69 2.12
1555 1650 1.994779 GAATGGCATTGCAAAAGGACG 59.005 47.619 19.07 0.00 0.00 4.79
1612 1708 3.473625 ACACTGGTACTACTTTGGTTGC 58.526 45.455 0.00 0.00 0.00 4.17
1613 1709 4.062991 GGACACTGGTACTACTTTGGTTG 58.937 47.826 0.00 0.00 0.00 3.77
1626 1722 1.543429 GCACTGCTAAAGGACACTGGT 60.543 52.381 0.00 0.00 0.00 4.00
1627 1723 1.160137 GCACTGCTAAAGGACACTGG 58.840 55.000 0.00 0.00 0.00 4.00
1628 1724 2.175878 AGCACTGCTAAAGGACACTG 57.824 50.000 0.21 0.00 36.99 3.66
1629 1725 2.900546 AGTAGCACTGCTAAAGGACACT 59.099 45.455 12.46 3.58 43.07 3.55
1639 1735 3.181461 ACTGAAGTTTGAGTAGCACTGCT 60.181 43.478 8.95 8.95 43.41 4.24
1643 1739 4.210120 CACTGACTGAAGTTTGAGTAGCAC 59.790 45.833 0.00 0.00 0.00 4.40
1650 1746 3.141398 GCATCCACTGACTGAAGTTTGA 58.859 45.455 0.00 0.00 0.00 2.69
1698 1798 0.809241 GTCTGGGCTCTGCTCGATTG 60.809 60.000 0.00 0.00 0.00 2.67
1714 1814 2.311463 CAGTCTATGATGTCCCCGTCT 58.689 52.381 0.00 0.00 0.00 4.18
1826 1939 2.030363 CCAGCAAAAACAATGGCGTCTA 60.030 45.455 0.00 0.00 0.00 2.59
1830 1943 2.083167 ATCCAGCAAAAACAATGGCG 57.917 45.000 0.00 0.00 32.63 5.69
1869 1985 0.322816 GGCCTCATCTGCAAGGACAA 60.323 55.000 6.34 0.00 40.72 3.18
2154 2270 2.171237 TGAGATAGGTGGTGGATGCAAG 59.829 50.000 0.00 0.00 0.00 4.01
2164 2280 4.248859 CAAACACTGAGTGAGATAGGTGG 58.751 47.826 20.97 0.00 36.96 4.61
2166 2282 5.552870 AACAAACACTGAGTGAGATAGGT 57.447 39.130 20.97 5.54 36.96 3.08
2167 2283 5.991606 TCAAACAAACACTGAGTGAGATAGG 59.008 40.000 20.97 4.93 36.96 2.57
2179 2295 1.134946 GCTGCCACTCAAACAAACACT 59.865 47.619 0.00 0.00 0.00 3.55
2225 2341 0.887836 CATGCACAGCACCAGTCAGT 60.888 55.000 0.00 0.00 43.04 3.41
2226 2342 0.604511 TCATGCACAGCACCAGTCAG 60.605 55.000 0.00 0.00 43.04 3.51
2227 2343 0.179023 TTCATGCACAGCACCAGTCA 60.179 50.000 0.00 0.00 43.04 3.41
2228 2344 0.520404 CTTCATGCACAGCACCAGTC 59.480 55.000 0.00 0.00 43.04 3.51
2241 2357 4.454847 ACAGTCAAGAGTTCATGCTTCATG 59.545 41.667 0.59 0.59 42.60 3.07
2257 2376 5.576384 GTGCTGAAAAATTCACAACAGTCAA 59.424 36.000 0.00 0.00 35.46 3.18
2449 2568 1.138859 TGGCTGATCTTATCGGTGGTG 59.861 52.381 0.00 0.00 37.96 4.17
2476 2595 1.599171 CGAGAGCGAGGTGATCACATC 60.599 57.143 26.58 26.58 40.82 3.06
2478 2597 0.960861 ACGAGAGCGAGGTGATCACA 60.961 55.000 26.47 0.00 41.64 3.58
2479 2598 1.003331 CTACGAGAGCGAGGTGATCAC 60.003 57.143 17.91 17.91 41.64 3.06
2506 2637 1.135689 GCGTGGCATTAAGTTGACAGG 60.136 52.381 0.00 1.07 42.17 4.00
2512 2643 1.632046 CGACGGCGTGGCATTAAGTT 61.632 55.000 21.19 0.00 0.00 2.66
2619 2754 2.952310 GGGCTAACCTGATGAATCAACC 59.048 50.000 0.00 0.00 36.18 3.77
2722 2857 8.992073 CAAGAATTGCAGGCTTAATTTTTAAGT 58.008 29.630 7.64 0.00 40.39 2.24
2748 2883 1.405105 ACAACACAAGCACATGTCACC 59.595 47.619 0.00 0.00 0.00 4.02
2788 2931 8.898761 TCACTCTACACAACACAAAATAAACAT 58.101 29.630 0.00 0.00 0.00 2.71
2789 2932 8.178964 GTCACTCTACACAACACAAAATAAACA 58.821 33.333 0.00 0.00 0.00 2.83
2790 2933 7.372396 CGTCACTCTACACAACACAAAATAAAC 59.628 37.037 0.00 0.00 0.00 2.01
2791 2934 7.403421 CGTCACTCTACACAACACAAAATAAA 58.597 34.615 0.00 0.00 0.00 1.40
2792 2935 6.510478 GCGTCACTCTACACAACACAAAATAA 60.510 38.462 0.00 0.00 0.00 1.40
2793 2936 5.050634 GCGTCACTCTACACAACACAAAATA 60.051 40.000 0.00 0.00 0.00 1.40
2794 2937 4.260620 GCGTCACTCTACACAACACAAAAT 60.261 41.667 0.00 0.00 0.00 1.82
2815 2958 3.118454 CCTGTTGCCTGGTACGCG 61.118 66.667 3.53 3.53 0.00 6.01
2845 2988 1.367840 GACGAACCCTGAGCACAGT 59.632 57.895 10.37 0.00 42.05 3.55
2971 3114 5.479306 TCAAACAGTAGTACAAGATGAGCC 58.521 41.667 2.52 0.00 0.00 4.70
2973 3116 8.994429 ATTCTCAAACAGTAGTACAAGATGAG 57.006 34.615 14.86 14.86 34.54 2.90
2980 3123 7.269316 TGTGACAATTCTCAAACAGTAGTACA 58.731 34.615 2.52 0.00 0.00 2.90
2982 3125 8.725405 TTTGTGACAATTCTCAAACAGTAGTA 57.275 30.769 0.00 0.00 39.28 1.82
3014 3163 1.753073 AGCAGCAAGTGGGCAATAATC 59.247 47.619 0.00 0.00 35.83 1.75
3018 3180 1.532316 ACAGCAGCAAGTGGGCAAT 60.532 52.632 0.00 0.00 35.83 3.56
3039 3201 3.857157 ACAAGAAGAGTAAAGGGCACA 57.143 42.857 0.00 0.00 0.00 4.57
3040 3202 3.502595 GGAACAAGAAGAGTAAAGGGCAC 59.497 47.826 0.00 0.00 0.00 5.01
3041 3203 3.394606 AGGAACAAGAAGAGTAAAGGGCA 59.605 43.478 0.00 0.00 0.00 5.36
3042 3204 4.022413 AGGAACAAGAAGAGTAAAGGGC 57.978 45.455 0.00 0.00 0.00 5.19
3043 3205 5.470437 GTCAAGGAACAAGAAGAGTAAAGGG 59.530 44.000 0.00 0.00 0.00 3.95
3053 3215 3.711704 AGAGTCCAGTCAAGGAACAAGAA 59.288 43.478 0.00 0.00 39.92 2.52
3059 3221 1.352083 CCCAGAGTCCAGTCAAGGAA 58.648 55.000 0.00 0.00 39.92 3.36
3166 3697 4.713553 TGAGGCTTCTATTGACAAACACA 58.286 39.130 0.00 0.00 0.00 3.72
3211 3742 2.749044 ATGGCACTCGCTTGCTGG 60.749 61.111 7.84 0.00 42.56 4.85
3273 3804 2.025037 AGGCCTTGGAATGCACTCATTA 60.025 45.455 0.00 0.00 42.60 1.90
3311 3842 3.072211 TCAAGAAGATGCTTGCACTCAG 58.928 45.455 0.00 0.00 43.78 3.35
3333 3864 2.587889 GGGGTTAGCCGCTTAGCA 59.412 61.111 10.45 0.00 43.60 3.49
3339 3870 0.179081 CTTCAGTAGGGGTTAGCCGC 60.179 60.000 4.34 4.34 46.91 6.53
3423 3989 6.143496 GGATCCTACATATATACATGCGTCG 58.857 44.000 3.84 0.00 0.00 5.12
3425 3991 5.826208 TCGGATCCTACATATATACATGCGT 59.174 40.000 10.75 0.00 0.00 5.24
3426 3992 6.313744 TCGGATCCTACATATATACATGCG 57.686 41.667 10.75 0.00 0.00 4.73
3427 3993 7.014326 TCCTTCGGATCCTACATATATACATGC 59.986 40.741 10.75 0.00 0.00 4.06
3429 3995 7.726291 CCTCCTTCGGATCCTACATATATACAT 59.274 40.741 10.75 0.00 0.00 2.29
3430 3996 7.061054 CCTCCTTCGGATCCTACATATATACA 58.939 42.308 10.75 0.00 0.00 2.29
3431 3997 6.490721 CCCTCCTTCGGATCCTACATATATAC 59.509 46.154 10.75 0.00 0.00 1.47
3433 3999 5.043281 ACCCTCCTTCGGATCCTACATATAT 60.043 44.000 10.75 0.00 0.00 0.86
3434 4000 4.294168 ACCCTCCTTCGGATCCTACATATA 59.706 45.833 10.75 0.00 0.00 0.86
3435 4001 3.077695 ACCCTCCTTCGGATCCTACATAT 59.922 47.826 10.75 0.00 0.00 1.78
3439 4005 1.330234 GACCCTCCTTCGGATCCTAC 58.670 60.000 10.75 0.00 0.00 3.18
3706 4272 1.450312 CTCCGTGAAGGTGCCCATC 60.450 63.158 0.00 0.00 41.99 3.51
3821 4387 2.172505 AGTCATGGTGGTGTTCTTGTCA 59.827 45.455 0.00 0.00 0.00 3.58
3822 4388 2.549754 CAGTCATGGTGGTGTTCTTGTC 59.450 50.000 0.00 0.00 0.00 3.18
3823 4389 2.172505 TCAGTCATGGTGGTGTTCTTGT 59.827 45.455 0.00 0.00 0.00 3.16
3824 4390 2.549754 GTCAGTCATGGTGGTGTTCTTG 59.450 50.000 0.00 0.00 0.00 3.02
3825 4391 2.806745 CGTCAGTCATGGTGGTGTTCTT 60.807 50.000 0.00 0.00 0.00 2.52
3826 4392 1.270305 CGTCAGTCATGGTGGTGTTCT 60.270 52.381 0.00 0.00 0.00 3.01
3827 4393 1.148310 CGTCAGTCATGGTGGTGTTC 58.852 55.000 0.00 0.00 0.00 3.18
3828 4394 0.756294 TCGTCAGTCATGGTGGTGTT 59.244 50.000 0.00 0.00 0.00 3.32
3829 4395 0.318441 CTCGTCAGTCATGGTGGTGT 59.682 55.000 0.00 0.00 0.00 4.16
3830 4396 0.318441 ACTCGTCAGTCATGGTGGTG 59.682 55.000 0.00 0.00 0.00 4.17
3831 4397 0.318441 CACTCGTCAGTCATGGTGGT 59.682 55.000 0.00 0.00 0.00 4.16
3832 4398 0.603065 TCACTCGTCAGTCATGGTGG 59.397 55.000 0.00 0.00 0.00 4.61
3833 4399 1.270826 ACTCACTCGTCAGTCATGGTG 59.729 52.381 0.00 0.00 0.00 4.17
3834 4400 1.270826 CACTCACTCGTCAGTCATGGT 59.729 52.381 0.00 0.00 0.00 3.55
3835 4401 1.541588 TCACTCACTCGTCAGTCATGG 59.458 52.381 0.00 0.00 0.00 3.66
3836 4402 2.997485 TCACTCACTCGTCAGTCATG 57.003 50.000 0.00 0.00 0.00 3.07
3837 4403 2.887783 ACTTCACTCACTCGTCAGTCAT 59.112 45.455 0.00 0.00 0.00 3.06
3838 4404 2.033424 CACTTCACTCACTCGTCAGTCA 59.967 50.000 0.00 0.00 0.00 3.41
3839 4405 2.033550 ACACTTCACTCACTCGTCAGTC 59.966 50.000 0.00 0.00 0.00 3.51
3840 4406 2.025155 ACACTTCACTCACTCGTCAGT 58.975 47.619 0.00 0.00 0.00 3.41
4031 4700 2.780595 CCTTTGGTAGGCCATCACG 58.219 57.895 5.01 0.00 45.56 4.35
4050 4719 7.837863 TCTACTACCACAGTATGAAAAAGGAG 58.162 38.462 0.00 0.00 39.06 3.69
4091 4760 8.469200 CATCCAATAATAGCCACAAAGAAAGAA 58.531 33.333 0.00 0.00 0.00 2.52
4100 4769 2.109834 CCCCCATCCAATAATAGCCACA 59.890 50.000 0.00 0.00 0.00 4.17
4123 4792 5.741673 GCCAAGACAGAAAAGAAGAGAGAGT 60.742 44.000 0.00 0.00 0.00 3.24
4124 4793 4.690280 GCCAAGACAGAAAAGAAGAGAGAG 59.310 45.833 0.00 0.00 0.00 3.20
4125 4794 4.503991 GGCCAAGACAGAAAAGAAGAGAGA 60.504 45.833 0.00 0.00 0.00 3.10
4126 4795 3.750652 GGCCAAGACAGAAAAGAAGAGAG 59.249 47.826 0.00 0.00 0.00 3.20
4127 4796 3.744660 GGCCAAGACAGAAAAGAAGAGA 58.255 45.455 0.00 0.00 0.00 3.10
4128 4797 2.481952 CGGCCAAGACAGAAAAGAAGAG 59.518 50.000 2.24 0.00 0.00 2.85
4132 4801 0.889186 GCCGGCCAAGACAGAAAAGA 60.889 55.000 18.11 0.00 0.00 2.52
4133 4802 0.890996 AGCCGGCCAAGACAGAAAAG 60.891 55.000 26.15 0.00 0.00 2.27
4168 4837 0.645496 AACCCCCAACCCTTTCCTTT 59.355 50.000 0.00 0.00 0.00 3.11
4170 4839 1.002242 TGAACCCCCAACCCTTTCCT 61.002 55.000 0.00 0.00 0.00 3.36
4173 4842 0.835971 GCATGAACCCCCAACCCTTT 60.836 55.000 0.00 0.00 0.00 3.11
4174 4843 1.229177 GCATGAACCCCCAACCCTT 60.229 57.895 0.00 0.00 0.00 3.95
4175 4844 1.814292 ATGCATGAACCCCCAACCCT 61.814 55.000 0.00 0.00 0.00 4.34
4176 4845 1.306056 ATGCATGAACCCCCAACCC 60.306 57.895 0.00 0.00 0.00 4.11
4177 4846 1.616091 CCATGCATGAACCCCCAACC 61.616 60.000 28.31 0.00 0.00 3.77
4179 4848 1.988956 GCCATGCATGAACCCCCAA 60.989 57.895 28.31 0.00 0.00 4.12
4180 4849 2.364056 GCCATGCATGAACCCCCA 60.364 61.111 28.31 0.00 0.00 4.96
4181 4850 2.364056 TGCCATGCATGAACCCCC 60.364 61.111 28.31 8.96 31.71 5.40
4195 4864 1.266867 ATTGTTGCCTTCCCCATGCC 61.267 55.000 0.00 0.00 0.00 4.40
4252 4930 1.821136 GGCATCCAAAGGAGTGAAAGG 59.179 52.381 0.00 0.00 34.05 3.11
4258 4936 2.846206 TGATAGTGGCATCCAAAGGAGT 59.154 45.455 0.00 0.00 34.18 3.85
4279 4957 2.283298 CTGCTTTCGATGTGCCATAGT 58.717 47.619 0.00 0.00 0.00 2.12
4280 4958 1.003116 GCTGCTTTCGATGTGCCATAG 60.003 52.381 0.00 0.00 0.00 2.23
4287 4967 0.813184 CCCATTGCTGCTTTCGATGT 59.187 50.000 0.00 0.00 0.00 3.06
4311 4991 2.993899 CAGAATACTCAACGGGACACAC 59.006 50.000 0.00 0.00 0.00 3.82
4313 4993 2.232941 TCCAGAATACTCAACGGGACAC 59.767 50.000 0.00 0.00 0.00 3.67
4326 5006 3.576982 AGACTTCACGGTGTTCCAGAATA 59.423 43.478 8.17 0.00 30.67 1.75
4328 5008 1.760613 AGACTTCACGGTGTTCCAGAA 59.239 47.619 8.17 0.00 0.00 3.02
4343 5023 2.012673 GCGCCATCATGAAGAAGACTT 58.987 47.619 0.00 0.00 39.24 3.01
4345 5025 0.659957 GGCGCCATCATGAAGAAGAC 59.340 55.000 24.80 0.00 0.00 3.01
4351 5031 2.472059 GCTTCGGCGCCATCATGAA 61.472 57.895 28.98 19.49 0.00 2.57
4360 5044 4.502495 AACACTTTGTTAGCTTCGGCGC 62.502 50.000 0.00 0.00 39.09 6.53
4365 5049 4.893424 TGGTGAACACTTTGTTAGCTTC 57.107 40.909 0.00 0.00 41.28 3.86
4368 5052 3.317993 ACCATGGTGAACACTTTGTTAGC 59.682 43.478 18.99 0.00 41.28 3.09
4372 5056 3.751175 CGATACCATGGTGAACACTTTGT 59.249 43.478 28.17 0.00 0.00 2.83
4376 5060 3.096852 TCTCGATACCATGGTGAACACT 58.903 45.455 28.17 4.70 0.00 3.55
4377 5061 3.520290 TCTCGATACCATGGTGAACAC 57.480 47.619 28.17 12.13 0.00 3.32
4378 5062 4.753516 AATCTCGATACCATGGTGAACA 57.246 40.909 28.17 7.70 0.00 3.18
4379 5063 5.869888 GGATAATCTCGATACCATGGTGAAC 59.130 44.000 28.17 16.18 0.00 3.18
4380 5064 5.780282 AGGATAATCTCGATACCATGGTGAA 59.220 40.000 28.17 8.99 0.00 3.18
4382 5066 5.667539 AGGATAATCTCGATACCATGGTG 57.332 43.478 28.17 11.15 0.00 4.17
4384 5068 4.872691 GCAAGGATAATCTCGATACCATGG 59.127 45.833 11.19 11.19 0.00 3.66
4387 5071 5.245977 TCATGCAAGGATAATCTCGATACCA 59.754 40.000 0.00 0.00 0.00 3.25
4388 5072 5.724328 TCATGCAAGGATAATCTCGATACC 58.276 41.667 0.00 0.00 0.00 2.73
4392 5076 5.535753 TCTTCATGCAAGGATAATCTCGA 57.464 39.130 0.00 0.00 32.22 4.04
4395 5079 6.776744 TGCTATCTTCATGCAAGGATAATCT 58.223 36.000 0.00 0.00 33.48 2.40
4429 6773 2.050144 TCCTTCAACCTCTGTCAGCTT 58.950 47.619 0.00 0.00 0.00 3.74
4624 10032 4.094887 CGTACTGCTTATGACAGGCAAATT 59.905 41.667 0.00 0.00 39.55 1.82
4630 10038 4.895224 TCTACGTACTGCTTATGACAGG 57.105 45.455 0.00 0.00 39.55 4.00
4638 10046 5.828859 AGACCAGATTATCTACGTACTGCTT 59.171 40.000 0.00 0.00 0.00 3.91
4639 10047 5.239744 CAGACCAGATTATCTACGTACTGCT 59.760 44.000 0.00 0.00 0.00 4.24
4640 10048 5.238868 TCAGACCAGATTATCTACGTACTGC 59.761 44.000 0.00 0.00 0.00 4.40
4644 10052 8.234136 ACAATTCAGACCAGATTATCTACGTA 57.766 34.615 0.00 0.00 0.00 3.57
4646 10054 8.331022 CAAACAATTCAGACCAGATTATCTACG 58.669 37.037 0.00 0.00 0.00 3.51
4650 10058 9.696917 AAAACAAACAATTCAGACCAGATTATC 57.303 29.630 0.00 0.00 0.00 1.75
4660 10068 5.584251 GGCTTTGGAAAACAAACAATTCAGA 59.416 36.000 0.00 0.00 43.81 3.27
4661 10069 5.353678 TGGCTTTGGAAAACAAACAATTCAG 59.646 36.000 0.00 0.00 43.81 3.02
4663 10071 5.809719 TGGCTTTGGAAAACAAACAATTC 57.190 34.783 0.00 0.00 43.81 2.17
4664 10072 6.121590 AGATGGCTTTGGAAAACAAACAATT 58.878 32.000 0.00 0.00 43.81 2.32
4665 10073 5.683681 AGATGGCTTTGGAAAACAAACAAT 58.316 33.333 0.00 0.00 43.81 2.71
4669 10077 4.740334 GCAGAGATGGCTTTGGAAAACAAA 60.740 41.667 0.00 0.00 46.34 2.83
4704 10112 3.755628 AAAGCAGCATGGCGCAGG 61.756 61.111 10.83 0.00 46.13 4.85
4705 10113 2.506217 CAAAGCAGCATGGCGCAG 60.506 61.111 10.83 0.00 46.13 5.18
4706 10114 2.366480 AAACAAAGCAGCATGGCGCA 62.366 50.000 10.83 0.00 46.13 6.09
4707 10115 1.665599 AAACAAAGCAGCATGGCGC 60.666 52.632 0.00 0.00 42.91 6.53
4708 10116 0.598158 ACAAACAAAGCAGCATGGCG 60.598 50.000 0.00 0.00 39.27 5.69
4709 10117 1.142474 GACAAACAAAGCAGCATGGC 58.858 50.000 0.00 0.00 35.86 4.40
4785 10208 1.732405 CGAGCATCTTACACGCACAGA 60.732 52.381 0.00 0.00 0.00 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.