Multiple sequence alignment - TraesCS5D01G467900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G467900 chr5D 100.000 2670 0 0 1 2670 509553794 509556463 0.000000e+00 4931.0
1 TraesCS5D01G467900 chr6D 97.104 2279 34 3 424 2670 467139406 467141684 0.000000e+00 3814.0
2 TraesCS5D01G467900 chrUn 97.171 2262 47 13 424 2670 110705369 110707628 0.000000e+00 3807.0
3 TraesCS5D01G467900 chrUn 97.307 1411 36 2 1262 2670 39283479 39282069 0.000000e+00 2394.0
4 TraesCS5D01G467900 chrUn 87.296 921 51 42 426 1295 39284385 39283480 0.000000e+00 992.0
5 TraesCS5D01G467900 chrUn 90.435 115 8 3 425 537 370509872 370509759 5.960000e-32 148.0
6 TraesCS5D01G467900 chr3A 93.953 2249 81 30 426 2670 17087374 17089571 0.000000e+00 3349.0
7 TraesCS5D01G467900 chr2A 96.821 1950 47 5 733 2670 377154608 377152662 0.000000e+00 3243.0
8 TraesCS5D01G467900 chr2A 85.704 1420 191 8 1261 2670 618957298 618958715 0.000000e+00 1487.0
9 TraesCS5D01G467900 chr2A 81.913 481 45 19 425 865 377154999 377154521 4.200000e-98 368.0
10 TraesCS5D01G467900 chr2B 94.124 1957 71 16 755 2670 250734736 250732783 0.000000e+00 2937.0
11 TraesCS5D01G467900 chr2B 84.286 420 49 11 424 835 250735138 250734728 6.930000e-106 394.0
12 TraesCS5D01G467900 chr3B 91.494 1258 65 14 426 1654 81305450 81306694 0.000000e+00 1692.0
13 TraesCS5D01G467900 chr3B 91.453 117 5 5 424 537 81327153 81327039 3.560000e-34 156.0
14 TraesCS5D01G467900 chr7D 85.906 1419 189 7 1261 2670 72315239 72313823 0.000000e+00 1502.0
15 TraesCS5D01G467900 chr5A 85.906 1419 188 8 1261 2670 257554868 257556283 0.000000e+00 1502.0
16 TraesCS5D01G467900 chr5A 85.250 739 47 26 426 1104 69019575 69018839 0.000000e+00 704.0
17 TraesCS5D01G467900 chr5A 83.255 424 27 21 1 422 636934653 636935034 1.520000e-92 350.0
18 TraesCS5D01G467900 chr5A 81.716 268 30 8 160 422 636991517 636991770 3.480000e-49 206.0
19 TraesCS5D01G467900 chr5A 92.208 77 1 2 17 93 636991154 636991225 1.310000e-18 104.0
20 TraesCS5D01G467900 chr5B 91.411 326 12 4 21 336 640283684 640284003 1.470000e-117 433.0
21 TraesCS5D01G467900 chr5B 93.750 64 4 0 335 398 640311022 640311085 2.190000e-16 97.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G467900 chr5D 509553794 509556463 2669 False 4931.0 4931 100.0000 1 2670 1 chr5D.!!$F1 2669
1 TraesCS5D01G467900 chr6D 467139406 467141684 2278 False 3814.0 3814 97.1040 424 2670 1 chr6D.!!$F1 2246
2 TraesCS5D01G467900 chrUn 110705369 110707628 2259 False 3807.0 3807 97.1710 424 2670 1 chrUn.!!$F1 2246
3 TraesCS5D01G467900 chrUn 39282069 39284385 2316 True 1693.0 2394 92.3015 426 2670 2 chrUn.!!$R2 2244
4 TraesCS5D01G467900 chr3A 17087374 17089571 2197 False 3349.0 3349 93.9530 426 2670 1 chr3A.!!$F1 2244
5 TraesCS5D01G467900 chr2A 377152662 377154999 2337 True 1805.5 3243 89.3670 425 2670 2 chr2A.!!$R1 2245
6 TraesCS5D01G467900 chr2A 618957298 618958715 1417 False 1487.0 1487 85.7040 1261 2670 1 chr2A.!!$F1 1409
7 TraesCS5D01G467900 chr2B 250732783 250735138 2355 True 1665.5 2937 89.2050 424 2670 2 chr2B.!!$R1 2246
8 TraesCS5D01G467900 chr3B 81305450 81306694 1244 False 1692.0 1692 91.4940 426 1654 1 chr3B.!!$F1 1228
9 TraesCS5D01G467900 chr7D 72313823 72315239 1416 True 1502.0 1502 85.9060 1261 2670 1 chr7D.!!$R1 1409
10 TraesCS5D01G467900 chr5A 257554868 257556283 1415 False 1502.0 1502 85.9060 1261 2670 1 chr5A.!!$F1 1409
11 TraesCS5D01G467900 chr5A 69018839 69019575 736 True 704.0 704 85.2500 426 1104 1 chr5A.!!$R1 678

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
179 180 0.033991 AGAAGCTAGAGAGGGCGTCA 60.034 55.0 10.15 0.0 38.89 4.35 F
358 359 0.104120 TAACCTCGGCACATGATCGG 59.896 55.0 0.00 0.0 0.00 4.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1659 1873 3.708563 ACAATCGTGGTCAAAAGGTTG 57.291 42.857 0.0 0.0 35.95 3.77 R
2255 2475 0.099968 CTGTCATCATTGCTTGGCCG 59.900 55.000 0.0 0.0 0.00 6.13 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 9.706691 ATTATGCTATATACAGTACTTTGCGTT 57.293 29.630 0.00 0.00 0.00 4.84
27 28 6.822073 TGCTATATACAGTACTTTGCGTTG 57.178 37.500 0.00 0.00 0.00 4.10
28 29 5.233476 TGCTATATACAGTACTTTGCGTTGC 59.767 40.000 0.00 0.00 0.00 4.17
29 30 5.462398 GCTATATACAGTACTTTGCGTTGCT 59.538 40.000 0.00 0.00 0.00 3.91
30 31 5.968387 ATATACAGTACTTTGCGTTGCTC 57.032 39.130 0.00 0.00 0.00 4.26
31 32 2.240493 ACAGTACTTTGCGTTGCTCT 57.760 45.000 0.00 0.00 0.00 4.09
32 33 3.380479 ACAGTACTTTGCGTTGCTCTA 57.620 42.857 0.00 0.00 0.00 2.43
33 34 3.057734 ACAGTACTTTGCGTTGCTCTAC 58.942 45.455 0.00 0.00 0.00 2.59
34 35 3.057019 CAGTACTTTGCGTTGCTCTACA 58.943 45.455 0.00 0.00 0.00 2.74
35 36 3.679980 CAGTACTTTGCGTTGCTCTACAT 59.320 43.478 0.00 0.00 0.00 2.29
36 37 3.679980 AGTACTTTGCGTTGCTCTACATG 59.320 43.478 0.00 0.00 0.00 3.21
37 38 2.494059 ACTTTGCGTTGCTCTACATGT 58.506 42.857 2.69 2.69 0.00 3.21
38 39 2.224079 ACTTTGCGTTGCTCTACATGTG 59.776 45.455 9.11 0.00 0.00 3.21
39 40 1.877637 TTGCGTTGCTCTACATGTGT 58.122 45.000 9.11 0.00 0.00 3.72
40 41 1.147473 TGCGTTGCTCTACATGTGTG 58.853 50.000 9.11 1.17 0.00 3.82
41 42 1.148310 GCGTTGCTCTACATGTGTGT 58.852 50.000 9.11 0.00 42.39 3.72
42 43 1.136252 GCGTTGCTCTACATGTGTGTG 60.136 52.381 9.11 3.68 39.39 3.82
43 44 2.135139 CGTTGCTCTACATGTGTGTGT 58.865 47.619 9.11 0.00 39.39 3.72
44 45 3.313690 CGTTGCTCTACATGTGTGTGTA 58.686 45.455 9.11 0.00 39.39 2.90
45 46 3.926527 CGTTGCTCTACATGTGTGTGTAT 59.073 43.478 9.11 0.00 39.39 2.29
46 47 5.099575 CGTTGCTCTACATGTGTGTGTATA 58.900 41.667 9.11 0.00 39.39 1.47
47 48 5.004440 CGTTGCTCTACATGTGTGTGTATAC 59.996 44.000 9.11 0.00 39.39 1.47
48 49 5.006153 TGCTCTACATGTGTGTGTATACC 57.994 43.478 9.11 0.00 39.39 2.73
49 50 4.709886 TGCTCTACATGTGTGTGTATACCT 59.290 41.667 9.11 0.00 39.39 3.08
50 51 5.043903 GCTCTACATGTGTGTGTATACCTG 58.956 45.833 9.11 0.00 39.39 4.00
51 52 5.006153 TCTACATGTGTGTGTATACCTGC 57.994 43.478 9.11 0.00 39.39 4.85
52 53 2.985896 ACATGTGTGTGTATACCTGCC 58.014 47.619 0.00 0.00 37.14 4.85
53 54 2.304470 ACATGTGTGTGTATACCTGCCA 59.696 45.455 0.00 0.00 37.14 4.92
54 55 3.054434 ACATGTGTGTGTATACCTGCCAT 60.054 43.478 0.00 0.00 37.14 4.40
55 56 2.984562 TGTGTGTGTATACCTGCCATG 58.015 47.619 0.00 0.00 0.00 3.66
56 57 1.670811 GTGTGTGTATACCTGCCATGC 59.329 52.381 0.00 0.00 0.00 4.06
57 58 1.280421 TGTGTGTATACCTGCCATGCA 59.720 47.619 0.00 0.00 36.92 3.96
58 59 2.092484 TGTGTGTATACCTGCCATGCAT 60.092 45.455 0.00 0.00 38.13 3.96
59 60 2.291465 GTGTGTATACCTGCCATGCATG 59.709 50.000 20.19 20.19 38.13 4.06
60 61 2.172293 TGTGTATACCTGCCATGCATGA 59.828 45.455 28.31 8.14 38.13 3.07
61 62 3.181441 TGTGTATACCTGCCATGCATGAT 60.181 43.478 28.31 14.19 38.13 2.45
62 63 3.438087 GTGTATACCTGCCATGCATGATC 59.562 47.826 28.31 18.32 38.13 2.92
63 64 2.211250 ATACCTGCCATGCATGATCC 57.789 50.000 28.31 15.33 38.13 3.36
64 65 0.845337 TACCTGCCATGCATGATCCA 59.155 50.000 28.31 18.75 38.13 3.41
65 66 0.754217 ACCTGCCATGCATGATCCAC 60.754 55.000 28.31 11.69 38.13 4.02
66 67 1.652563 CTGCCATGCATGATCCACG 59.347 57.895 28.31 10.97 38.13 4.94
67 68 1.792118 CTGCCATGCATGATCCACGG 61.792 60.000 28.31 10.44 38.13 4.94
68 69 1.526686 GCCATGCATGATCCACGGA 60.527 57.895 28.31 0.00 0.00 4.69
69 70 1.512996 GCCATGCATGATCCACGGAG 61.513 60.000 28.31 8.75 0.00 4.63
71 72 1.070601 CCATGCATGATCCACGGAGTA 59.929 52.381 28.31 0.00 41.61 2.59
72 73 2.410939 CATGCATGATCCACGGAGTAG 58.589 52.381 22.59 0.00 41.61 2.57
73 74 1.485124 TGCATGATCCACGGAGTAGT 58.515 50.000 0.00 0.00 41.61 2.73
74 75 1.136891 TGCATGATCCACGGAGTAGTG 59.863 52.381 0.00 0.00 41.61 2.74
75 76 1.137086 GCATGATCCACGGAGTAGTGT 59.863 52.381 0.00 0.00 41.61 3.55
76 77 2.799917 GCATGATCCACGGAGTAGTGTC 60.800 54.545 0.00 0.00 41.61 3.67
77 78 1.471119 TGATCCACGGAGTAGTGTCC 58.529 55.000 0.00 0.00 41.61 4.02
78 79 1.272258 TGATCCACGGAGTAGTGTCCA 60.272 52.381 0.00 0.00 41.61 4.02
79 80 1.822990 GATCCACGGAGTAGTGTCCAA 59.177 52.381 0.00 0.00 41.61 3.53
80 81 1.707106 TCCACGGAGTAGTGTCCAAA 58.293 50.000 0.00 0.00 41.61 3.28
81 82 2.253610 TCCACGGAGTAGTGTCCAAAT 58.746 47.619 0.00 0.00 41.61 2.32
82 83 3.433343 TCCACGGAGTAGTGTCCAAATA 58.567 45.455 0.00 0.00 41.61 1.40
83 84 3.194116 TCCACGGAGTAGTGTCCAAATAC 59.806 47.826 0.00 0.00 41.61 1.89
84 85 3.176708 CACGGAGTAGTGTCCAAATACG 58.823 50.000 0.00 0.00 41.61 3.06
85 86 2.165030 ACGGAGTAGTGTCCAAATACGG 59.835 50.000 0.00 0.00 41.94 4.02
86 87 2.547826 GGAGTAGTGTCCAAATACGGC 58.452 52.381 0.00 0.00 36.51 5.68
87 88 2.547826 GAGTAGTGTCCAAATACGGCC 58.452 52.381 0.00 0.00 0.00 6.13
88 89 2.167900 GAGTAGTGTCCAAATACGGCCT 59.832 50.000 0.00 0.00 0.00 5.19
89 90 2.570302 AGTAGTGTCCAAATACGGCCTT 59.430 45.455 0.00 0.00 0.00 4.35
90 91 2.579410 AGTGTCCAAATACGGCCTTT 57.421 45.000 0.00 0.00 0.00 3.11
91 92 2.433436 AGTGTCCAAATACGGCCTTTC 58.567 47.619 0.00 0.00 0.00 2.62
92 93 1.471287 GTGTCCAAATACGGCCTTTCC 59.529 52.381 0.00 0.00 0.00 3.13
101 102 2.361104 GGCCTTTCCGTCCATGCA 60.361 61.111 0.00 0.00 0.00 3.96
102 103 1.754234 GGCCTTTCCGTCCATGCAT 60.754 57.895 0.00 0.00 0.00 3.96
103 104 1.322538 GGCCTTTCCGTCCATGCATT 61.323 55.000 0.00 0.00 0.00 3.56
104 105 1.388547 GCCTTTCCGTCCATGCATTA 58.611 50.000 0.00 0.00 0.00 1.90
105 106 1.956477 GCCTTTCCGTCCATGCATTAT 59.044 47.619 0.00 0.00 0.00 1.28
106 107 2.362077 GCCTTTCCGTCCATGCATTATT 59.638 45.455 0.00 0.00 0.00 1.40
107 108 3.550842 GCCTTTCCGTCCATGCATTATTC 60.551 47.826 0.00 0.00 0.00 1.75
108 109 3.631686 CCTTTCCGTCCATGCATTATTCA 59.368 43.478 0.00 0.00 0.00 2.57
109 110 4.498009 CCTTTCCGTCCATGCATTATTCAC 60.498 45.833 0.00 0.00 0.00 3.18
110 111 3.274095 TCCGTCCATGCATTATTCACA 57.726 42.857 0.00 0.00 0.00 3.58
111 112 3.615155 TCCGTCCATGCATTATTCACAA 58.385 40.909 0.00 0.00 0.00 3.33
112 113 3.376859 TCCGTCCATGCATTATTCACAAC 59.623 43.478 0.00 0.00 0.00 3.32
113 114 3.489059 CCGTCCATGCATTATTCACAACC 60.489 47.826 0.00 0.00 0.00 3.77
114 115 3.489059 CGTCCATGCATTATTCACAACCC 60.489 47.826 0.00 0.00 0.00 4.11
115 116 3.446873 GTCCATGCATTATTCACAACCCA 59.553 43.478 0.00 0.00 0.00 4.51
116 117 3.446873 TCCATGCATTATTCACAACCCAC 59.553 43.478 0.00 0.00 0.00 4.61
117 118 3.437428 CATGCATTATTCACAACCCACG 58.563 45.455 0.00 0.00 0.00 4.94
118 119 2.784347 TGCATTATTCACAACCCACGA 58.216 42.857 0.00 0.00 0.00 4.35
119 120 3.351740 TGCATTATTCACAACCCACGAT 58.648 40.909 0.00 0.00 0.00 3.73
120 121 3.128415 TGCATTATTCACAACCCACGATG 59.872 43.478 0.00 0.00 0.00 3.84
121 122 3.489059 GCATTATTCACAACCCACGATGG 60.489 47.826 0.00 0.00 37.25 3.51
122 123 3.426787 TTATTCACAACCCACGATGGT 57.573 42.857 0.00 0.00 41.55 3.55
123 124 1.533625 ATTCACAACCCACGATGGTG 58.466 50.000 0.03 0.03 43.99 4.17
124 125 1.169661 TTCACAACCCACGATGGTGC 61.170 55.000 1.71 0.00 43.00 5.01
125 126 1.896183 CACAACCCACGATGGTGCA 60.896 57.895 1.71 0.00 43.00 4.57
126 127 1.074775 ACAACCCACGATGGTGCAT 59.925 52.632 1.71 0.00 43.00 3.96
127 128 1.243342 ACAACCCACGATGGTGCATG 61.243 55.000 1.71 3.66 43.00 4.06
128 129 2.342650 AACCCACGATGGTGCATGC 61.343 57.895 11.82 11.82 43.00 4.06
129 130 2.751036 CCCACGATGGTGCATGCA 60.751 61.111 18.46 18.46 43.00 3.96
130 131 2.122797 CCCACGATGGTGCATGCAT 61.123 57.895 25.64 8.04 43.00 3.96
131 132 1.065109 CCACGATGGTGCATGCATG 59.935 57.895 25.64 22.70 43.00 4.06
147 148 6.671614 CATGCATGCATTTATCCTGTTTTT 57.328 33.333 30.32 2.29 33.90 1.94
148 149 7.773864 CATGCATGCATTTATCCTGTTTTTA 57.226 32.000 30.32 0.00 33.90 1.52
149 150 7.623770 CATGCATGCATTTATCCTGTTTTTAC 58.376 34.615 30.32 0.00 33.90 2.01
150 151 6.695429 TGCATGCATTTATCCTGTTTTTACA 58.305 32.000 18.46 0.00 0.00 2.41
151 152 6.812656 TGCATGCATTTATCCTGTTTTTACAG 59.187 34.615 18.46 0.00 37.48 2.74
152 153 6.237915 GCATGCATTTATCCTGTTTTTACAGC 60.238 38.462 14.21 0.00 36.46 4.40
153 154 6.338214 TGCATTTATCCTGTTTTTACAGCA 57.662 33.333 0.00 0.00 36.46 4.41
154 155 6.934056 TGCATTTATCCTGTTTTTACAGCAT 58.066 32.000 0.00 0.00 36.46 3.79
155 156 7.035004 TGCATTTATCCTGTTTTTACAGCATC 58.965 34.615 0.00 0.00 36.46 3.91
156 157 7.035004 GCATTTATCCTGTTTTTACAGCATCA 58.965 34.615 0.00 0.00 36.46 3.07
157 158 7.707893 GCATTTATCCTGTTTTTACAGCATCAT 59.292 33.333 0.00 0.00 36.46 2.45
158 159 9.241317 CATTTATCCTGTTTTTACAGCATCATC 57.759 33.333 0.00 0.00 36.46 2.92
159 160 7.936496 TTATCCTGTTTTTACAGCATCATCA 57.064 32.000 0.00 0.00 36.46 3.07
160 161 6.839124 ATCCTGTTTTTACAGCATCATCAA 57.161 33.333 0.00 0.00 36.46 2.57
161 162 6.258230 TCCTGTTTTTACAGCATCATCAAG 57.742 37.500 0.00 0.00 36.46 3.02
162 163 6.003326 TCCTGTTTTTACAGCATCATCAAGA 58.997 36.000 0.00 0.00 36.46 3.02
163 164 6.489700 TCCTGTTTTTACAGCATCATCAAGAA 59.510 34.615 0.00 0.00 36.46 2.52
164 165 6.805271 CCTGTTTTTACAGCATCATCAAGAAG 59.195 38.462 0.00 0.00 36.46 2.85
165 166 6.151691 TGTTTTTACAGCATCATCAAGAAGC 58.848 36.000 0.00 0.00 41.14 3.86
173 174 4.309099 GCATCATCAAGAAGCTAGAGAGG 58.691 47.826 0.00 0.00 37.93 3.69
174 175 4.800249 GCATCATCAAGAAGCTAGAGAGGG 60.800 50.000 0.00 0.00 37.93 4.30
175 176 2.697751 TCATCAAGAAGCTAGAGAGGGC 59.302 50.000 0.00 0.00 0.00 5.19
176 177 1.107114 TCAAGAAGCTAGAGAGGGCG 58.893 55.000 0.00 0.00 0.00 6.13
177 178 0.820871 CAAGAAGCTAGAGAGGGCGT 59.179 55.000 0.00 0.00 0.00 5.68
178 179 1.107945 AAGAAGCTAGAGAGGGCGTC 58.892 55.000 0.00 0.00 37.25 5.19
179 180 0.033991 AGAAGCTAGAGAGGGCGTCA 60.034 55.000 10.15 0.00 38.89 4.35
180 181 1.036707 GAAGCTAGAGAGGGCGTCAT 58.963 55.000 10.15 0.15 37.04 3.06
181 182 1.410882 GAAGCTAGAGAGGGCGTCATT 59.589 52.381 10.15 0.00 37.04 2.57
182 183 1.036707 AGCTAGAGAGGGCGTCATTC 58.963 55.000 10.15 0.00 0.00 2.67
183 184 1.036707 GCTAGAGAGGGCGTCATTCT 58.963 55.000 10.15 7.04 0.00 2.40
184 185 1.000717 GCTAGAGAGGGCGTCATTCTC 60.001 57.143 10.15 11.54 38.06 2.87
185 186 2.582052 CTAGAGAGGGCGTCATTCTCT 58.418 52.381 21.84 21.84 46.83 3.10
186 187 1.859302 AGAGAGGGCGTCATTCTCTT 58.141 50.000 15.17 3.28 43.82 2.85
187 188 2.183679 AGAGAGGGCGTCATTCTCTTT 58.816 47.619 15.17 0.00 43.82 2.52
188 189 2.167487 AGAGAGGGCGTCATTCTCTTTC 59.833 50.000 15.17 0.00 43.82 2.62
189 190 1.902508 AGAGGGCGTCATTCTCTTTCA 59.097 47.619 10.15 0.00 34.55 2.69
190 191 2.503356 AGAGGGCGTCATTCTCTTTCAT 59.497 45.455 10.15 0.00 34.55 2.57
191 192 3.054802 AGAGGGCGTCATTCTCTTTCATT 60.055 43.478 10.15 0.00 34.55 2.57
192 193 3.690460 AGGGCGTCATTCTCTTTCATTT 58.310 40.909 0.00 0.00 0.00 2.32
193 194 4.082125 AGGGCGTCATTCTCTTTCATTTT 58.918 39.130 0.00 0.00 0.00 1.82
194 195 4.156739 AGGGCGTCATTCTCTTTCATTTTC 59.843 41.667 0.00 0.00 0.00 2.29
195 196 4.415735 GGCGTCATTCTCTTTCATTTTCC 58.584 43.478 0.00 0.00 0.00 3.13
196 197 4.082787 GGCGTCATTCTCTTTCATTTTCCA 60.083 41.667 0.00 0.00 0.00 3.53
197 198 5.460646 GCGTCATTCTCTTTCATTTTCCAA 58.539 37.500 0.00 0.00 0.00 3.53
198 199 5.920273 GCGTCATTCTCTTTCATTTTCCAAA 59.080 36.000 0.00 0.00 0.00 3.28
199 200 6.129088 GCGTCATTCTCTTTCATTTTCCAAAC 60.129 38.462 0.00 0.00 0.00 2.93
200 201 6.917477 CGTCATTCTCTTTCATTTTCCAAACA 59.083 34.615 0.00 0.00 0.00 2.83
201 202 7.434897 CGTCATTCTCTTTCATTTTCCAAACAA 59.565 33.333 0.00 0.00 0.00 2.83
202 203 9.097257 GTCATTCTCTTTCATTTTCCAAACAAA 57.903 29.630 0.00 0.00 0.00 2.83
203 204 9.835389 TCATTCTCTTTCATTTTCCAAACAAAT 57.165 25.926 0.00 0.00 0.00 2.32
204 205 9.872757 CATTCTCTTTCATTTTCCAAACAAATG 57.127 29.630 0.00 0.00 41.26 2.32
205 206 9.835389 ATTCTCTTTCATTTTCCAAACAAATGA 57.165 25.926 4.35 4.35 44.99 2.57
206 207 9.835389 TTCTCTTTCATTTTCCAAACAAATGAT 57.165 25.926 8.50 0.00 45.61 2.45
207 208 9.263538 TCTCTTTCATTTTCCAAACAAATGATG 57.736 29.630 8.50 5.99 45.61 3.07
208 209 7.863666 TCTTTCATTTTCCAAACAAATGATGC 58.136 30.769 8.50 0.00 45.61 3.91
209 210 6.557291 TTCATTTTCCAAACAAATGATGCC 57.443 33.333 8.50 0.00 45.61 4.40
210 211 5.002516 TCATTTTCCAAACAAATGATGCCC 58.997 37.500 4.35 0.00 42.90 5.36
211 212 4.703379 TTTTCCAAACAAATGATGCCCT 57.297 36.364 0.00 0.00 0.00 5.19
212 213 3.681593 TTCCAAACAAATGATGCCCTG 57.318 42.857 0.00 0.00 0.00 4.45
213 214 2.607499 TCCAAACAAATGATGCCCTGT 58.393 42.857 0.00 0.00 0.00 4.00
214 215 2.562298 TCCAAACAAATGATGCCCTGTC 59.438 45.455 0.00 0.00 0.00 3.51
215 216 2.354003 CCAAACAAATGATGCCCTGTCC 60.354 50.000 0.00 0.00 0.00 4.02
216 217 2.564062 CAAACAAATGATGCCCTGTCCT 59.436 45.455 0.00 0.00 0.00 3.85
217 218 3.737559 AACAAATGATGCCCTGTCCTA 57.262 42.857 0.00 0.00 0.00 2.94
218 219 3.959495 ACAAATGATGCCCTGTCCTAT 57.041 42.857 0.00 0.00 0.00 2.57
219 220 3.825328 ACAAATGATGCCCTGTCCTATC 58.175 45.455 0.00 0.00 0.00 2.08
220 221 3.152341 CAAATGATGCCCTGTCCTATCC 58.848 50.000 0.00 0.00 0.00 2.59
221 222 2.429933 ATGATGCCCTGTCCTATCCT 57.570 50.000 0.00 0.00 0.00 3.24
222 223 3.567375 ATGATGCCCTGTCCTATCCTA 57.433 47.619 0.00 0.00 0.00 2.94
223 224 2.609747 TGATGCCCTGTCCTATCCTAC 58.390 52.381 0.00 0.00 0.00 3.18
224 225 2.180086 TGATGCCCTGTCCTATCCTACT 59.820 50.000 0.00 0.00 0.00 2.57
225 226 3.401342 TGATGCCCTGTCCTATCCTACTA 59.599 47.826 0.00 0.00 0.00 1.82
226 227 3.240310 TGCCCTGTCCTATCCTACTAC 57.760 52.381 0.00 0.00 0.00 2.73
227 228 2.161030 GCCCTGTCCTATCCTACTACG 58.839 57.143 0.00 0.00 0.00 3.51
228 229 2.792878 CCCTGTCCTATCCTACTACGG 58.207 57.143 0.00 0.00 0.00 4.02
229 230 2.107901 CCCTGTCCTATCCTACTACGGT 59.892 54.545 0.00 0.00 0.00 4.83
230 231 3.436180 CCCTGTCCTATCCTACTACGGTT 60.436 52.174 0.00 0.00 0.00 4.44
231 232 3.568853 CCTGTCCTATCCTACTACGGTTG 59.431 52.174 0.00 0.00 0.00 3.77
232 233 4.458397 CTGTCCTATCCTACTACGGTTGA 58.542 47.826 0.00 0.00 0.00 3.18
233 234 4.858850 TGTCCTATCCTACTACGGTTGAA 58.141 43.478 0.00 0.00 0.00 2.69
234 235 5.263599 TGTCCTATCCTACTACGGTTGAAA 58.736 41.667 0.00 0.00 0.00 2.69
235 236 5.126061 TGTCCTATCCTACTACGGTTGAAAC 59.874 44.000 0.00 0.00 0.00 2.78
236 237 4.336433 TCCTATCCTACTACGGTTGAAACG 59.664 45.833 0.00 0.00 37.36 3.60
238 239 5.296780 CCTATCCTACTACGGTTGAAACGTA 59.703 44.000 15.22 15.22 44.93 3.57
245 246 1.523934 ACGGTTGAAACGTAGCTTTCG 59.476 47.619 6.43 0.00 43.60 3.46
246 247 1.136446 CGGTTGAAACGTAGCTTTCGG 60.136 52.381 13.80 0.00 32.86 4.30
247 248 2.137523 GGTTGAAACGTAGCTTTCGGA 58.862 47.619 13.80 0.00 32.86 4.55
248 249 2.545106 GGTTGAAACGTAGCTTTCGGAA 59.455 45.455 13.80 0.00 32.86 4.30
249 250 3.187842 GGTTGAAACGTAGCTTTCGGAAT 59.812 43.478 13.80 1.95 32.86 3.01
250 251 4.389687 GGTTGAAACGTAGCTTTCGGAATA 59.610 41.667 13.80 0.00 32.86 1.75
251 252 5.064325 GGTTGAAACGTAGCTTTCGGAATAT 59.936 40.000 13.80 0.00 32.86 1.28
252 253 6.402875 GGTTGAAACGTAGCTTTCGGAATATT 60.403 38.462 13.80 0.00 32.86 1.28
253 254 6.340537 TGAAACGTAGCTTTCGGAATATTC 57.659 37.500 6.93 6.93 32.86 1.75
254 255 5.870433 TGAAACGTAGCTTTCGGAATATTCA 59.130 36.000 17.07 11.93 32.86 2.57
255 256 5.713822 AACGTAGCTTTCGGAATATTCAC 57.286 39.130 17.07 5.93 0.00 3.18
256 257 5.007385 ACGTAGCTTTCGGAATATTCACT 57.993 39.130 17.07 6.67 0.00 3.41
257 258 5.041940 ACGTAGCTTTCGGAATATTCACTC 58.958 41.667 17.07 0.00 0.00 3.51
258 259 5.041287 CGTAGCTTTCGGAATATTCACTCA 58.959 41.667 17.07 0.00 0.00 3.41
259 260 5.518847 CGTAGCTTTCGGAATATTCACTCAA 59.481 40.000 17.07 3.67 0.00 3.02
260 261 5.803020 AGCTTTCGGAATATTCACTCAAC 57.197 39.130 17.07 2.74 0.00 3.18
261 262 5.491982 AGCTTTCGGAATATTCACTCAACT 58.508 37.500 17.07 4.88 0.00 3.16
262 263 5.352569 AGCTTTCGGAATATTCACTCAACTG 59.647 40.000 17.07 0.00 0.00 3.16
263 264 5.351465 GCTTTCGGAATATTCACTCAACTGA 59.649 40.000 17.07 0.00 0.00 3.41
264 265 6.128282 GCTTTCGGAATATTCACTCAACTGAA 60.128 38.462 17.07 3.42 34.65 3.02
265 266 6.721571 TTCGGAATATTCACTCAACTGAAC 57.278 37.500 17.07 0.00 32.95 3.18
266 267 5.789521 TCGGAATATTCACTCAACTGAACA 58.210 37.500 17.07 0.00 32.95 3.18
267 268 6.227522 TCGGAATATTCACTCAACTGAACAA 58.772 36.000 17.07 0.00 32.95 2.83
268 269 6.708502 TCGGAATATTCACTCAACTGAACAAA 59.291 34.615 17.07 0.00 32.95 2.83
269 270 7.390440 TCGGAATATTCACTCAACTGAACAAAT 59.610 33.333 17.07 0.00 32.95 2.32
270 271 7.482743 CGGAATATTCACTCAACTGAACAAATG 59.517 37.037 17.07 0.00 32.95 2.32
271 272 7.756722 GGAATATTCACTCAACTGAACAAATGG 59.243 37.037 17.07 0.00 32.95 3.16
272 273 8.408043 AATATTCACTCAACTGAACAAATGGA 57.592 30.769 0.00 0.00 32.95 3.41
273 274 6.906157 ATTCACTCAACTGAACAAATGGAT 57.094 33.333 0.00 0.00 32.95 3.41
274 275 5.947228 TCACTCAACTGAACAAATGGATC 57.053 39.130 0.00 0.00 0.00 3.36
275 276 5.375773 TCACTCAACTGAACAAATGGATCA 58.624 37.500 0.00 0.00 0.00 2.92
276 277 5.471116 TCACTCAACTGAACAAATGGATCAG 59.529 40.000 13.60 13.60 44.77 2.90
277 278 4.763793 ACTCAACTGAACAAATGGATCAGG 59.236 41.667 17.31 6.97 43.79 3.86
278 279 4.081406 TCAACTGAACAAATGGATCAGGG 58.919 43.478 17.31 11.58 43.79 4.45
279 280 3.814504 ACTGAACAAATGGATCAGGGT 57.185 42.857 17.31 2.36 43.79 4.34
280 281 4.927267 ACTGAACAAATGGATCAGGGTA 57.073 40.909 17.31 0.00 43.79 3.69
281 282 5.255397 ACTGAACAAATGGATCAGGGTAA 57.745 39.130 17.31 0.00 43.79 2.85
282 283 5.640147 ACTGAACAAATGGATCAGGGTAAA 58.360 37.500 17.31 0.00 43.79 2.01
283 284 6.074648 ACTGAACAAATGGATCAGGGTAAAA 58.925 36.000 17.31 0.00 43.79 1.52
284 285 6.553100 ACTGAACAAATGGATCAGGGTAAAAA 59.447 34.615 17.31 0.00 43.79 1.94
285 286 6.991938 TGAACAAATGGATCAGGGTAAAAAG 58.008 36.000 0.00 0.00 0.00 2.27
286 287 6.780031 TGAACAAATGGATCAGGGTAAAAAGA 59.220 34.615 0.00 0.00 0.00 2.52
287 288 6.840780 ACAAATGGATCAGGGTAAAAAGAG 57.159 37.500 0.00 0.00 0.00 2.85
288 289 6.314917 ACAAATGGATCAGGGTAAAAAGAGT 58.685 36.000 0.00 0.00 0.00 3.24
289 290 6.209391 ACAAATGGATCAGGGTAAAAAGAGTG 59.791 38.462 0.00 0.00 0.00 3.51
290 291 3.686016 TGGATCAGGGTAAAAAGAGTGC 58.314 45.455 0.00 0.00 0.00 4.40
291 292 3.017442 GGATCAGGGTAAAAAGAGTGCC 58.983 50.000 0.00 0.00 0.00 5.01
292 293 2.579410 TCAGGGTAAAAAGAGTGCCC 57.421 50.000 0.00 0.00 39.60 5.36
293 294 1.777878 TCAGGGTAAAAAGAGTGCCCA 59.222 47.619 0.00 0.00 41.67 5.36
294 295 2.378547 TCAGGGTAAAAAGAGTGCCCAT 59.621 45.455 0.00 0.00 41.67 4.00
295 296 2.755103 CAGGGTAAAAAGAGTGCCCATC 59.245 50.000 0.00 0.00 41.67 3.51
296 297 2.378547 AGGGTAAAAAGAGTGCCCATCA 59.621 45.455 0.00 0.00 41.67 3.07
297 298 2.492088 GGGTAAAAAGAGTGCCCATCAC 59.508 50.000 0.00 0.00 45.98 3.06
306 307 2.408271 GTGCCCATCACTCATTCTGA 57.592 50.000 0.00 0.00 42.38 3.27
307 308 2.928334 GTGCCCATCACTCATTCTGAT 58.072 47.619 0.00 0.00 42.38 2.90
308 309 3.285484 GTGCCCATCACTCATTCTGATT 58.715 45.455 0.00 0.00 42.38 2.57
309 310 3.066342 GTGCCCATCACTCATTCTGATTG 59.934 47.826 0.00 0.00 42.38 2.67
310 311 3.285484 GCCCATCACTCATTCTGATTGT 58.715 45.455 0.08 0.00 30.26 2.71
311 312 3.066342 GCCCATCACTCATTCTGATTGTG 59.934 47.826 0.08 0.77 30.26 3.33
312 313 4.267536 CCCATCACTCATTCTGATTGTGT 58.732 43.478 2.44 2.44 30.26 3.72
313 314 4.095932 CCCATCACTCATTCTGATTGTGTG 59.904 45.833 20.31 20.31 39.01 3.82
314 315 4.095932 CCATCACTCATTCTGATTGTGTGG 59.904 45.833 23.40 14.23 38.48 4.17
315 316 4.622260 TCACTCATTCTGATTGTGTGGA 57.378 40.909 23.40 13.75 38.48 4.02
316 317 4.971939 TCACTCATTCTGATTGTGTGGAA 58.028 39.130 23.40 10.97 38.48 3.53
317 318 4.999311 TCACTCATTCTGATTGTGTGGAAG 59.001 41.667 23.40 7.91 38.48 3.46
318 319 4.758674 CACTCATTCTGATTGTGTGGAAGT 59.241 41.667 19.31 5.61 35.82 3.01
319 320 4.758674 ACTCATTCTGATTGTGTGGAAGTG 59.241 41.667 6.49 0.00 0.00 3.16
320 321 4.074259 TCATTCTGATTGTGTGGAAGTGG 58.926 43.478 0.08 0.00 0.00 4.00
321 322 3.855255 TTCTGATTGTGTGGAAGTGGA 57.145 42.857 0.00 0.00 0.00 4.02
322 323 3.855255 TCTGATTGTGTGGAAGTGGAA 57.145 42.857 0.00 0.00 0.00 3.53
323 324 3.476552 TCTGATTGTGTGGAAGTGGAAC 58.523 45.455 0.00 0.00 0.00 3.62
324 325 2.554032 CTGATTGTGTGGAAGTGGAACC 59.446 50.000 0.00 0.00 37.80 3.62
325 326 1.886542 GATTGTGTGGAAGTGGAACCC 59.113 52.381 0.00 0.00 37.80 4.11
326 327 0.923358 TTGTGTGGAAGTGGAACCCT 59.077 50.000 0.00 0.00 37.80 4.34
327 328 0.182537 TGTGTGGAAGTGGAACCCTG 59.817 55.000 0.00 0.00 37.80 4.45
328 329 1.150536 TGTGGAAGTGGAACCCTGC 59.849 57.895 0.00 0.00 37.80 4.85
329 330 1.966451 GTGGAAGTGGAACCCTGCG 60.966 63.158 0.00 0.00 37.80 5.18
330 331 2.359975 GGAAGTGGAACCCTGCGG 60.360 66.667 0.00 0.00 37.80 5.69
332 333 1.966451 GAAGTGGAACCCTGCGGTG 60.966 63.158 0.00 0.00 43.71 4.94
333 334 4.643387 AGTGGAACCCTGCGGTGC 62.643 66.667 0.00 0.00 43.71 5.01
337 338 4.980805 GAACCCTGCGGTGCGTGA 62.981 66.667 0.00 0.00 43.71 4.35
338 339 4.555709 AACCCTGCGGTGCGTGAA 62.556 61.111 0.00 0.00 43.71 3.18
339 340 3.842925 AACCCTGCGGTGCGTGAAT 62.843 57.895 0.00 0.00 43.71 2.57
340 341 2.125310 CCCTGCGGTGCGTGAATA 60.125 61.111 0.00 0.00 0.00 1.75
341 342 1.743623 CCCTGCGGTGCGTGAATAA 60.744 57.895 0.00 0.00 0.00 1.40
342 343 1.423845 CCTGCGGTGCGTGAATAAC 59.576 57.895 0.00 0.00 0.00 1.89
343 344 1.423845 CTGCGGTGCGTGAATAACC 59.576 57.895 0.00 0.00 0.00 2.85
344 345 1.004320 TGCGGTGCGTGAATAACCT 60.004 52.632 0.00 0.00 0.00 3.50
345 346 1.017177 TGCGGTGCGTGAATAACCTC 61.017 55.000 0.00 0.00 0.00 3.85
346 347 1.995991 CGGTGCGTGAATAACCTCG 59.004 57.895 0.00 0.00 0.00 4.63
347 348 1.418342 CGGTGCGTGAATAACCTCGG 61.418 60.000 0.00 0.00 0.00 4.63
348 349 1.702491 GGTGCGTGAATAACCTCGGC 61.702 60.000 0.00 0.00 0.00 5.54
349 350 1.017177 GTGCGTGAATAACCTCGGCA 61.017 55.000 0.00 0.00 0.00 5.69
350 351 1.017177 TGCGTGAATAACCTCGGCAC 61.017 55.000 0.00 0.00 0.00 5.01
351 352 1.017177 GCGTGAATAACCTCGGCACA 61.017 55.000 0.00 0.00 0.00 4.57
352 353 1.651987 CGTGAATAACCTCGGCACAT 58.348 50.000 0.00 0.00 0.00 3.21
353 354 1.327460 CGTGAATAACCTCGGCACATG 59.673 52.381 0.00 0.00 0.00 3.21
354 355 2.627945 GTGAATAACCTCGGCACATGA 58.372 47.619 0.00 0.00 0.00 3.07
355 356 3.206150 GTGAATAACCTCGGCACATGAT 58.794 45.455 0.00 0.00 0.00 2.45
356 357 3.248602 GTGAATAACCTCGGCACATGATC 59.751 47.826 0.00 0.00 0.00 2.92
357 358 2.154854 ATAACCTCGGCACATGATCG 57.845 50.000 0.00 0.00 0.00 3.69
358 359 0.104120 TAACCTCGGCACATGATCGG 59.896 55.000 0.00 0.00 0.00 4.18
359 360 2.969238 CCTCGGCACATGATCGGC 60.969 66.667 0.00 0.00 0.00 5.54
360 361 2.107750 CTCGGCACATGATCGGCT 59.892 61.111 0.00 0.00 0.00 5.52
361 362 2.202919 TCGGCACATGATCGGCTG 60.203 61.111 0.00 2.80 35.25 4.85
362 363 3.274586 CGGCACATGATCGGCTGG 61.275 66.667 0.00 0.00 0.00 4.85
363 364 3.589881 GGCACATGATCGGCTGGC 61.590 66.667 0.00 0.00 0.00 4.85
364 365 3.589881 GCACATGATCGGCTGGCC 61.590 66.667 0.00 0.00 0.00 5.36
365 366 2.191375 CACATGATCGGCTGGCCT 59.809 61.111 3.32 0.00 0.00 5.19
366 367 1.890979 CACATGATCGGCTGGCCTC 60.891 63.158 3.32 2.23 0.00 4.70
367 368 2.369633 ACATGATCGGCTGGCCTCA 61.370 57.895 3.32 7.90 0.00 3.86
368 369 1.072678 CATGATCGGCTGGCCTCAT 59.927 57.895 3.32 9.79 33.10 2.90
369 370 1.072678 ATGATCGGCTGGCCTCATG 59.927 57.895 13.27 0.00 32.11 3.07
370 371 2.281345 GATCGGCTGGCCTCATGG 60.281 66.667 3.32 0.00 0.00 3.66
371 372 2.769621 ATCGGCTGGCCTCATGGA 60.770 61.111 3.32 0.00 34.57 3.41
372 373 3.112205 ATCGGCTGGCCTCATGGAC 62.112 63.158 3.32 0.00 43.36 4.02
373 374 4.864334 CGGCTGGCCTCATGGACC 62.864 72.222 3.32 0.00 42.00 4.46
374 375 4.512914 GGCTGGCCTCATGGACCC 62.513 72.222 3.32 0.00 42.00 4.46
375 376 3.415087 GCTGGCCTCATGGACCCT 61.415 66.667 3.32 0.00 42.00 4.34
376 377 2.593978 CTGGCCTCATGGACCCTG 59.406 66.667 3.32 0.00 42.00 4.45
377 378 3.016971 TGGCCTCATGGACCCTGG 61.017 66.667 3.32 0.00 42.00 4.45
378 379 2.692368 GGCCTCATGGACCCTGGA 60.692 66.667 0.00 0.00 34.48 3.86
379 380 2.592308 GCCTCATGGACCCTGGAC 59.408 66.667 0.00 0.00 34.57 4.02
380 381 2.300967 GCCTCATGGACCCTGGACA 61.301 63.158 0.00 0.00 34.57 4.02
381 382 1.604378 CCTCATGGACCCTGGACAC 59.396 63.158 0.00 0.00 34.57 3.67
382 383 1.219124 CTCATGGACCCTGGACACG 59.781 63.158 0.00 0.00 0.00 4.49
383 384 2.436646 CATGGACCCTGGACACGC 60.437 66.667 0.00 0.00 0.00 5.34
384 385 4.082523 ATGGACCCTGGACACGCG 62.083 66.667 3.53 3.53 0.00 6.01
403 404 2.365105 GGTCCGTCCCATGGAGGA 60.365 66.667 15.22 15.95 39.66 3.71
404 405 2.435693 GGTCCGTCCCATGGAGGAG 61.436 68.421 15.22 1.16 39.66 3.69
405 406 2.764128 TCCGTCCCATGGAGGAGC 60.764 66.667 15.22 0.00 39.66 4.70
406 407 3.083349 CCGTCCCATGGAGGAGCA 61.083 66.667 15.22 0.00 39.66 4.26
407 408 2.503061 CGTCCCATGGAGGAGCAG 59.497 66.667 15.22 0.00 39.66 4.24
408 409 2.060383 CGTCCCATGGAGGAGCAGA 61.060 63.158 15.22 0.00 39.66 4.26
409 410 1.524482 GTCCCATGGAGGAGCAGAC 59.476 63.158 15.22 6.29 41.22 3.51
410 411 0.980231 GTCCCATGGAGGAGCAGACT 60.980 60.000 15.22 0.00 41.22 3.24
411 412 0.636647 TCCCATGGAGGAGCAGACTA 59.363 55.000 15.22 0.00 41.22 2.59
412 413 0.755686 CCCATGGAGGAGCAGACTAC 59.244 60.000 15.22 0.00 41.22 2.73
413 414 1.690845 CCCATGGAGGAGCAGACTACT 60.691 57.143 15.22 0.00 41.07 2.57
414 415 2.424957 CCCATGGAGGAGCAGACTACTA 60.425 54.545 15.22 0.00 37.13 1.82
415 416 2.890311 CCATGGAGGAGCAGACTACTAG 59.110 54.545 5.56 0.00 37.13 2.57
416 417 3.561143 CATGGAGGAGCAGACTACTAGT 58.439 50.000 0.00 0.00 37.13 2.57
417 418 3.741245 TGGAGGAGCAGACTACTAGTT 57.259 47.619 0.00 0.00 37.13 2.24
418 419 4.048970 TGGAGGAGCAGACTACTAGTTT 57.951 45.455 0.00 0.00 37.13 2.66
419 420 5.188988 TGGAGGAGCAGACTACTAGTTTA 57.811 43.478 0.00 0.00 37.13 2.01
420 421 4.948621 TGGAGGAGCAGACTACTAGTTTAC 59.051 45.833 0.00 0.00 37.13 2.01
421 422 4.338964 GGAGGAGCAGACTACTAGTTTACC 59.661 50.000 0.00 0.00 37.13 2.85
422 423 3.946558 AGGAGCAGACTACTAGTTTACCG 59.053 47.826 0.00 0.00 34.24 4.02
442 443 5.908341 ACCGTTGAGAGAATTCCTTCTATC 58.092 41.667 0.65 3.63 45.73 2.08
504 505 4.210331 ACTTTTTGCTTCCTCATGTGACT 58.790 39.130 0.00 0.00 0.00 3.41
538 539 3.701205 TTATGCCTCACATGACACTGT 57.299 42.857 0.00 0.00 40.06 3.55
631 635 4.785453 CCCCAGCCTTCCTCACGC 62.785 72.222 0.00 0.00 0.00 5.34
1461 1672 6.509656 ACGTGACTTTGAGTATAACACAGAA 58.490 36.000 0.00 0.00 0.00 3.02
2044 2264 6.043127 TGCATAGATGGATTTCTTAGTGGCTA 59.957 38.462 0.00 0.00 0.00 3.93
2255 2475 6.342282 GGTTTAGCCATATGCACTGATGCC 62.342 50.000 0.00 0.00 43.80 4.40
2265 2485 3.063704 CTGATGCCGGCCAAGCAA 61.064 61.111 26.77 3.54 44.83 3.91
2363 2583 8.209917 TCAAGAAGAAGTTTACTGGAAAAGTC 57.790 34.615 0.00 0.00 40.56 3.01
2636 2856 3.679025 CGAGGCAGCTGATTATGATCTTC 59.321 47.826 20.43 1.72 33.28 2.87
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 9.706691 AACGCAAAGTACTGTATATAGCATAAT 57.293 29.630 0.00 0.00 0.00 1.28
1 2 8.974408 CAACGCAAAGTACTGTATATAGCATAA 58.026 33.333 0.00 0.00 0.00 1.90
2 3 7.115805 GCAACGCAAAGTACTGTATATAGCATA 59.884 37.037 0.00 0.00 0.00 3.14
3 4 6.073765 GCAACGCAAAGTACTGTATATAGCAT 60.074 38.462 0.00 0.00 0.00 3.79
4 5 5.233476 GCAACGCAAAGTACTGTATATAGCA 59.767 40.000 0.00 0.00 0.00 3.49
5 6 5.462398 AGCAACGCAAAGTACTGTATATAGC 59.538 40.000 0.00 0.00 0.00 2.97
6 7 6.918569 AGAGCAACGCAAAGTACTGTATATAG 59.081 38.462 0.00 0.00 0.00 1.31
7 8 6.802608 AGAGCAACGCAAAGTACTGTATATA 58.197 36.000 0.00 0.00 0.00 0.86
8 9 5.661458 AGAGCAACGCAAAGTACTGTATAT 58.339 37.500 0.00 0.00 0.00 0.86
9 10 5.068234 AGAGCAACGCAAAGTACTGTATA 57.932 39.130 0.00 0.00 0.00 1.47
10 11 3.926616 AGAGCAACGCAAAGTACTGTAT 58.073 40.909 0.00 0.00 0.00 2.29
11 12 3.380479 AGAGCAACGCAAAGTACTGTA 57.620 42.857 0.00 0.00 0.00 2.74
12 13 2.240493 AGAGCAACGCAAAGTACTGT 57.760 45.000 0.00 0.00 0.00 3.55
13 14 3.057019 TGTAGAGCAACGCAAAGTACTG 58.943 45.455 0.00 0.00 0.00 2.74
14 15 3.380479 TGTAGAGCAACGCAAAGTACT 57.620 42.857 0.00 0.00 0.00 2.73
15 16 3.432252 ACATGTAGAGCAACGCAAAGTAC 59.568 43.478 0.00 0.00 0.00 2.73
16 17 3.431912 CACATGTAGAGCAACGCAAAGTA 59.568 43.478 0.00 0.00 0.00 2.24
17 18 2.224079 CACATGTAGAGCAACGCAAAGT 59.776 45.455 0.00 0.00 0.00 2.66
18 19 2.224079 ACACATGTAGAGCAACGCAAAG 59.776 45.455 0.00 0.00 0.00 2.77
19 20 2.032117 CACACATGTAGAGCAACGCAAA 60.032 45.455 0.00 0.00 0.00 3.68
20 21 1.530720 CACACATGTAGAGCAACGCAA 59.469 47.619 0.00 0.00 0.00 4.85
21 22 1.147473 CACACATGTAGAGCAACGCA 58.853 50.000 0.00 0.00 0.00 5.24
22 23 1.136252 CACACACATGTAGAGCAACGC 60.136 52.381 0.00 0.00 36.72 4.84
23 24 2.135139 ACACACACATGTAGAGCAACG 58.865 47.619 0.00 0.00 36.72 4.10
24 25 5.291128 GGTATACACACACATGTAGAGCAAC 59.709 44.000 5.01 0.00 41.91 4.17
25 26 5.186992 AGGTATACACACACATGTAGAGCAA 59.813 40.000 5.01 0.00 43.74 3.91
26 27 4.709886 AGGTATACACACACATGTAGAGCA 59.290 41.667 5.01 0.00 43.74 4.26
27 28 5.043903 CAGGTATACACACACATGTAGAGC 58.956 45.833 5.01 2.42 42.38 4.09
28 29 5.043903 GCAGGTATACACACACATGTAGAG 58.956 45.833 5.01 0.00 38.43 2.43
29 30 4.142026 GGCAGGTATACACACACATGTAGA 60.142 45.833 5.01 0.00 38.43 2.59
30 31 4.119862 GGCAGGTATACACACACATGTAG 58.880 47.826 5.01 0.00 38.43 2.74
31 32 3.515901 TGGCAGGTATACACACACATGTA 59.484 43.478 5.01 0.00 36.72 2.29
32 33 2.304470 TGGCAGGTATACACACACATGT 59.696 45.455 5.01 0.00 40.80 3.21
33 34 2.984562 TGGCAGGTATACACACACATG 58.015 47.619 5.01 0.00 0.00 3.21
34 35 3.544684 CATGGCAGGTATACACACACAT 58.455 45.455 5.01 0.00 0.00 3.21
35 36 2.939198 GCATGGCAGGTATACACACACA 60.939 50.000 5.01 0.00 0.00 3.72
36 37 1.670811 GCATGGCAGGTATACACACAC 59.329 52.381 5.01 0.00 0.00 3.82
37 38 1.280421 TGCATGGCAGGTATACACACA 59.720 47.619 5.01 0.00 33.32 3.72
38 39 2.036958 TGCATGGCAGGTATACACAC 57.963 50.000 5.01 0.00 33.32 3.82
39 40 2.172293 TCATGCATGGCAGGTATACACA 59.828 45.455 25.97 0.00 43.65 3.72
40 41 2.849942 TCATGCATGGCAGGTATACAC 58.150 47.619 25.97 0.00 43.65 2.90
41 42 3.559811 GGATCATGCATGGCAGGTATACA 60.560 47.826 25.97 3.31 43.65 2.29
42 43 3.012518 GGATCATGCATGGCAGGTATAC 58.987 50.000 25.97 8.47 43.65 1.47
43 44 2.643801 TGGATCATGCATGGCAGGTATA 59.356 45.455 25.97 4.85 43.65 1.47
44 45 1.426215 TGGATCATGCATGGCAGGTAT 59.574 47.619 25.97 11.25 43.65 2.73
45 46 0.845337 TGGATCATGCATGGCAGGTA 59.155 50.000 25.97 6.40 43.65 3.08
46 47 0.754217 GTGGATCATGCATGGCAGGT 60.754 55.000 25.97 7.86 43.65 4.00
47 48 1.792118 CGTGGATCATGCATGGCAGG 61.792 60.000 25.97 7.76 43.65 4.85
48 49 1.652563 CGTGGATCATGCATGGCAG 59.347 57.895 25.97 8.64 43.65 4.85
49 50 1.824760 CCGTGGATCATGCATGGCA 60.825 57.895 25.97 8.77 38.04 4.92
50 51 1.512996 CTCCGTGGATCATGCATGGC 61.513 60.000 25.97 17.60 43.60 4.40
51 52 0.179037 ACTCCGTGGATCATGCATGG 60.179 55.000 25.97 11.21 45.06 3.66
52 53 2.224137 ACTACTCCGTGGATCATGCATG 60.224 50.000 21.07 21.07 0.00 4.06
53 54 2.042464 ACTACTCCGTGGATCATGCAT 58.958 47.619 0.00 0.00 0.00 3.96
54 55 1.136891 CACTACTCCGTGGATCATGCA 59.863 52.381 0.00 0.00 0.00 3.96
55 56 1.137086 ACACTACTCCGTGGATCATGC 59.863 52.381 0.00 0.00 39.19 4.06
56 57 2.223829 GGACACTACTCCGTGGATCATG 60.224 54.545 0.00 0.00 39.19 3.07
57 58 2.032620 GGACACTACTCCGTGGATCAT 58.967 52.381 0.00 0.00 39.19 2.45
58 59 1.272258 TGGACACTACTCCGTGGATCA 60.272 52.381 0.00 0.00 39.19 2.92
59 60 1.471119 TGGACACTACTCCGTGGATC 58.529 55.000 0.00 0.00 39.19 3.36
60 61 1.933021 TTGGACACTACTCCGTGGAT 58.067 50.000 0.00 0.00 39.19 3.41
61 62 1.707106 TTTGGACACTACTCCGTGGA 58.293 50.000 0.00 0.00 39.19 4.02
62 63 2.762535 ATTTGGACACTACTCCGTGG 57.237 50.000 0.00 0.00 39.19 4.94
63 64 3.176708 CGTATTTGGACACTACTCCGTG 58.823 50.000 0.00 0.00 40.67 4.94
64 65 2.165030 CCGTATTTGGACACTACTCCGT 59.835 50.000 0.00 0.00 32.22 4.69
65 66 2.805845 CCGTATTTGGACACTACTCCG 58.194 52.381 0.00 0.00 32.22 4.63
66 67 2.547826 GCCGTATTTGGACACTACTCC 58.452 52.381 0.00 0.00 0.00 3.85
67 68 2.167900 AGGCCGTATTTGGACACTACTC 59.832 50.000 0.00 0.00 40.67 2.59
68 69 2.185387 AGGCCGTATTTGGACACTACT 58.815 47.619 0.00 0.00 40.67 2.57
69 70 2.685850 AGGCCGTATTTGGACACTAC 57.314 50.000 0.00 0.00 40.67 2.73
70 71 3.602483 GAAAGGCCGTATTTGGACACTA 58.398 45.455 0.00 0.00 40.67 2.74
71 72 2.433436 GAAAGGCCGTATTTGGACACT 58.567 47.619 0.00 0.00 40.67 3.55
72 73 1.471287 GGAAAGGCCGTATTTGGACAC 59.529 52.381 0.00 0.00 40.67 3.67
73 74 1.828979 GGAAAGGCCGTATTTGGACA 58.171 50.000 0.00 0.00 40.67 4.02
85 86 1.388547 TAATGCATGGACGGAAAGGC 58.611 50.000 0.00 0.00 0.00 4.35
86 87 3.631686 TGAATAATGCATGGACGGAAAGG 59.368 43.478 0.00 0.00 0.00 3.11
87 88 4.096231 TGTGAATAATGCATGGACGGAAAG 59.904 41.667 0.00 0.00 0.00 2.62
88 89 4.013050 TGTGAATAATGCATGGACGGAAA 58.987 39.130 0.00 0.00 0.00 3.13
89 90 3.615155 TGTGAATAATGCATGGACGGAA 58.385 40.909 0.00 0.00 0.00 4.30
90 91 3.274095 TGTGAATAATGCATGGACGGA 57.726 42.857 0.00 0.00 0.00 4.69
91 92 3.489059 GGTTGTGAATAATGCATGGACGG 60.489 47.826 0.00 0.00 0.00 4.79
92 93 3.489059 GGGTTGTGAATAATGCATGGACG 60.489 47.826 0.00 0.00 0.00 4.79
93 94 3.446873 TGGGTTGTGAATAATGCATGGAC 59.553 43.478 0.00 0.00 0.00 4.02
94 95 3.446873 GTGGGTTGTGAATAATGCATGGA 59.553 43.478 0.00 0.00 0.00 3.41
95 96 3.734597 CGTGGGTTGTGAATAATGCATGG 60.735 47.826 0.00 0.00 0.00 3.66
96 97 3.128415 TCGTGGGTTGTGAATAATGCATG 59.872 43.478 0.00 0.00 0.00 4.06
97 98 3.351740 TCGTGGGTTGTGAATAATGCAT 58.648 40.909 0.00 0.00 0.00 3.96
98 99 2.784347 TCGTGGGTTGTGAATAATGCA 58.216 42.857 0.00 0.00 0.00 3.96
99 100 3.489059 CCATCGTGGGTTGTGAATAATGC 60.489 47.826 0.00 0.00 32.67 3.56
100 101 3.694072 ACCATCGTGGGTTGTGAATAATG 59.306 43.478 8.57 0.00 43.37 1.90
101 102 3.694072 CACCATCGTGGGTTGTGAATAAT 59.306 43.478 8.57 0.00 43.37 1.28
102 103 3.078097 CACCATCGTGGGTTGTGAATAA 58.922 45.455 8.57 0.00 43.37 1.40
103 104 2.705730 CACCATCGTGGGTTGTGAATA 58.294 47.619 8.57 0.00 43.37 1.75
104 105 1.533625 CACCATCGTGGGTTGTGAAT 58.466 50.000 8.57 0.00 43.37 2.57
105 106 1.169661 GCACCATCGTGGGTTGTGAA 61.170 55.000 8.57 0.00 43.37 3.18
106 107 1.599518 GCACCATCGTGGGTTGTGA 60.600 57.895 8.57 0.00 43.37 3.58
107 108 1.243342 ATGCACCATCGTGGGTTGTG 61.243 55.000 8.57 0.00 43.37 3.33
108 109 1.074775 ATGCACCATCGTGGGTTGT 59.925 52.632 8.57 0.00 43.37 3.32
109 110 1.507630 CATGCACCATCGTGGGTTG 59.492 57.895 8.57 1.09 43.37 3.77
110 111 2.342650 GCATGCACCATCGTGGGTT 61.343 57.895 14.21 0.00 43.37 4.11
111 112 2.751436 GCATGCACCATCGTGGGT 60.751 61.111 14.21 2.35 43.37 4.51
112 113 2.122797 ATGCATGCACCATCGTGGG 61.123 57.895 25.37 1.74 43.37 4.61
113 114 1.065109 CATGCATGCACCATCGTGG 59.935 57.895 25.37 1.38 45.02 4.94
114 115 4.702020 CATGCATGCACCATCGTG 57.298 55.556 25.37 12.71 43.35 4.35
124 125 6.671614 AAAAACAGGATAAATGCATGCATG 57.328 33.333 32.79 22.70 36.68 4.06
125 126 7.329499 TGTAAAAACAGGATAAATGCATGCAT 58.671 30.769 27.46 27.46 38.46 3.96
126 127 6.695429 TGTAAAAACAGGATAAATGCATGCA 58.305 32.000 25.04 25.04 0.00 3.96
127 128 6.237915 GCTGTAAAAACAGGATAAATGCATGC 60.238 38.462 11.82 11.82 38.14 4.06
128 129 6.812656 TGCTGTAAAAACAGGATAAATGCATG 59.187 34.615 0.00 0.00 38.14 4.06
129 130 6.934056 TGCTGTAAAAACAGGATAAATGCAT 58.066 32.000 7.57 0.00 38.14 3.96
130 131 6.338214 TGCTGTAAAAACAGGATAAATGCA 57.662 33.333 7.57 0.00 38.14 3.96
131 132 7.035004 TGATGCTGTAAAAACAGGATAAATGC 58.965 34.615 11.77 1.74 46.37 3.56
132 133 9.241317 GATGATGCTGTAAAAACAGGATAAATG 57.759 33.333 11.77 0.00 46.37 2.32
133 134 8.970020 TGATGATGCTGTAAAAACAGGATAAAT 58.030 29.630 11.77 9.15 46.37 1.40
134 135 8.347004 TGATGATGCTGTAAAAACAGGATAAA 57.653 30.769 11.77 5.27 46.37 1.40
135 136 7.936496 TGATGATGCTGTAAAAACAGGATAA 57.064 32.000 11.77 6.09 46.37 1.75
136 137 7.828717 TCTTGATGATGCTGTAAAAACAGGATA 59.171 33.333 11.77 3.14 46.37 2.59
138 139 6.003326 TCTTGATGATGCTGTAAAAACAGGA 58.997 36.000 7.57 4.99 42.08 3.86
139 140 6.258230 TCTTGATGATGCTGTAAAAACAGG 57.742 37.500 7.57 0.00 38.14 4.00
140 141 6.307318 GCTTCTTGATGATGCTGTAAAAACAG 59.693 38.462 1.14 1.14 41.11 3.16
141 142 6.151691 GCTTCTTGATGATGCTGTAAAAACA 58.848 36.000 0.00 0.00 41.11 2.83
142 143 6.623223 GCTTCTTGATGATGCTGTAAAAAC 57.377 37.500 0.00 0.00 41.11 2.43
151 152 4.309099 CCTCTCTAGCTTCTTGATGATGC 58.691 47.826 0.00 0.00 43.61 3.91
152 153 4.800249 GCCCTCTCTAGCTTCTTGATGATG 60.800 50.000 0.00 0.00 0.00 3.07
153 154 3.324556 GCCCTCTCTAGCTTCTTGATGAT 59.675 47.826 0.00 0.00 0.00 2.45
154 155 2.697751 GCCCTCTCTAGCTTCTTGATGA 59.302 50.000 0.00 0.00 0.00 2.92
155 156 2.545532 CGCCCTCTCTAGCTTCTTGATG 60.546 54.545 0.00 0.00 0.00 3.07
156 157 1.686052 CGCCCTCTCTAGCTTCTTGAT 59.314 52.381 0.00 0.00 0.00 2.57
157 158 1.107114 CGCCCTCTCTAGCTTCTTGA 58.893 55.000 0.00 0.00 0.00 3.02
158 159 0.820871 ACGCCCTCTCTAGCTTCTTG 59.179 55.000 0.00 0.00 0.00 3.02
159 160 1.107945 GACGCCCTCTCTAGCTTCTT 58.892 55.000 0.00 0.00 0.00 2.52
160 161 0.033991 TGACGCCCTCTCTAGCTTCT 60.034 55.000 0.00 0.00 0.00 2.85
161 162 1.036707 ATGACGCCCTCTCTAGCTTC 58.963 55.000 0.00 0.00 0.00 3.86
162 163 1.410882 GAATGACGCCCTCTCTAGCTT 59.589 52.381 0.00 0.00 0.00 3.74
163 164 1.036707 GAATGACGCCCTCTCTAGCT 58.963 55.000 0.00 0.00 0.00 3.32
164 165 1.000717 GAGAATGACGCCCTCTCTAGC 60.001 57.143 0.00 0.00 34.09 3.42
165 166 2.582052 AGAGAATGACGCCCTCTCTAG 58.418 52.381 5.41 0.00 43.22 2.43
166 167 2.738587 AGAGAATGACGCCCTCTCTA 57.261 50.000 5.41 0.00 43.22 2.43
167 168 1.859302 AAGAGAATGACGCCCTCTCT 58.141 50.000 0.00 2.11 46.20 3.10
168 169 2.093973 TGAAAGAGAATGACGCCCTCTC 60.094 50.000 0.00 0.00 36.36 3.20
169 170 1.902508 TGAAAGAGAATGACGCCCTCT 59.097 47.619 0.00 0.00 38.79 3.69
170 171 2.386661 TGAAAGAGAATGACGCCCTC 57.613 50.000 0.00 0.00 0.00 4.30
171 172 3.356529 AATGAAAGAGAATGACGCCCT 57.643 42.857 0.00 0.00 0.00 5.19
172 173 4.415735 GAAAATGAAAGAGAATGACGCCC 58.584 43.478 0.00 0.00 0.00 6.13
173 174 4.082787 TGGAAAATGAAAGAGAATGACGCC 60.083 41.667 0.00 0.00 0.00 5.68
174 175 5.046910 TGGAAAATGAAAGAGAATGACGC 57.953 39.130 0.00 0.00 0.00 5.19
175 176 6.917477 TGTTTGGAAAATGAAAGAGAATGACG 59.083 34.615 0.00 0.00 0.00 4.35
176 177 8.647143 TTGTTTGGAAAATGAAAGAGAATGAC 57.353 30.769 0.00 0.00 0.00 3.06
177 178 9.835389 ATTTGTTTGGAAAATGAAAGAGAATGA 57.165 25.926 0.00 0.00 0.00 2.57
178 179 9.872757 CATTTGTTTGGAAAATGAAAGAGAATG 57.127 29.630 3.36 0.00 44.30 2.67
179 180 9.835389 TCATTTGTTTGGAAAATGAAAGAGAAT 57.165 25.926 8.67 0.00 46.05 2.40
188 189 5.005094 AGGGCATCATTTGTTTGGAAAATG 58.995 37.500 3.10 3.10 43.38 2.32
189 190 5.005094 CAGGGCATCATTTGTTTGGAAAAT 58.995 37.500 0.00 0.00 0.00 1.82
190 191 4.141528 ACAGGGCATCATTTGTTTGGAAAA 60.142 37.500 0.00 0.00 0.00 2.29
191 192 3.390639 ACAGGGCATCATTTGTTTGGAAA 59.609 39.130 0.00 0.00 0.00 3.13
192 193 2.971330 ACAGGGCATCATTTGTTTGGAA 59.029 40.909 0.00 0.00 0.00 3.53
193 194 2.562298 GACAGGGCATCATTTGTTTGGA 59.438 45.455 0.00 0.00 0.00 3.53
194 195 2.354003 GGACAGGGCATCATTTGTTTGG 60.354 50.000 0.00 0.00 0.00 3.28
195 196 2.564062 AGGACAGGGCATCATTTGTTTG 59.436 45.455 0.00 0.00 0.00 2.93
196 197 2.893424 AGGACAGGGCATCATTTGTTT 58.107 42.857 0.00 0.00 0.00 2.83
197 198 2.610438 AGGACAGGGCATCATTTGTT 57.390 45.000 0.00 0.00 0.00 2.83
198 199 3.435601 GGATAGGACAGGGCATCATTTGT 60.436 47.826 0.00 0.00 0.00 2.83
199 200 3.152341 GGATAGGACAGGGCATCATTTG 58.848 50.000 0.00 0.00 0.00 2.32
200 201 3.059097 AGGATAGGACAGGGCATCATTT 58.941 45.455 0.00 0.00 0.00 2.32
201 202 2.711174 AGGATAGGACAGGGCATCATT 58.289 47.619 0.00 0.00 0.00 2.57
202 203 2.429933 AGGATAGGACAGGGCATCAT 57.570 50.000 0.00 0.00 0.00 2.45
203 204 2.180086 AGTAGGATAGGACAGGGCATCA 59.820 50.000 0.00 0.00 0.00 3.07
204 205 2.896039 AGTAGGATAGGACAGGGCATC 58.104 52.381 0.00 0.00 0.00 3.91
205 206 3.780626 GTAGTAGGATAGGACAGGGCAT 58.219 50.000 0.00 0.00 0.00 4.40
206 207 2.488528 CGTAGTAGGATAGGACAGGGCA 60.489 54.545 0.00 0.00 0.00 5.36
207 208 2.161030 CGTAGTAGGATAGGACAGGGC 58.839 57.143 0.00 0.00 0.00 5.19
208 209 2.107901 ACCGTAGTAGGATAGGACAGGG 59.892 54.545 0.00 0.00 34.73 4.45
209 210 3.505480 ACCGTAGTAGGATAGGACAGG 57.495 52.381 0.00 0.00 34.73 4.00
210 211 4.458397 TCAACCGTAGTAGGATAGGACAG 58.542 47.826 0.00 0.00 34.73 3.51
211 212 4.508551 TCAACCGTAGTAGGATAGGACA 57.491 45.455 0.00 0.00 34.73 4.02
212 213 5.586339 GTTTCAACCGTAGTAGGATAGGAC 58.414 45.833 0.00 0.00 34.73 3.85
213 214 4.336433 CGTTTCAACCGTAGTAGGATAGGA 59.664 45.833 0.00 0.00 34.73 2.94
214 215 4.096984 ACGTTTCAACCGTAGTAGGATAGG 59.903 45.833 0.00 0.00 36.65 2.57
215 216 5.240713 ACGTTTCAACCGTAGTAGGATAG 57.759 43.478 0.00 0.00 36.65 2.08
224 225 2.725723 CGAAAGCTACGTTTCAACCGTA 59.274 45.455 0.00 0.00 39.60 4.02
225 226 1.523934 CGAAAGCTACGTTTCAACCGT 59.476 47.619 0.00 0.00 42.06 4.83
226 227 1.136446 CCGAAAGCTACGTTTCAACCG 60.136 52.381 0.00 0.00 36.39 4.44
227 228 2.137523 TCCGAAAGCTACGTTTCAACC 58.862 47.619 0.00 0.00 36.39 3.77
228 229 3.865224 TTCCGAAAGCTACGTTTCAAC 57.135 42.857 0.00 0.00 36.39 3.18
229 230 6.369340 TGAATATTCCGAAAGCTACGTTTCAA 59.631 34.615 12.90 0.00 36.39 2.69
230 231 5.870433 TGAATATTCCGAAAGCTACGTTTCA 59.130 36.000 12.90 9.16 36.39 2.69
231 232 6.035758 AGTGAATATTCCGAAAGCTACGTTTC 59.964 38.462 12.90 0.00 33.74 2.78
232 233 5.873164 AGTGAATATTCCGAAAGCTACGTTT 59.127 36.000 12.90 0.00 0.00 3.60
233 234 5.416947 AGTGAATATTCCGAAAGCTACGTT 58.583 37.500 12.90 0.61 0.00 3.99
234 235 5.007385 AGTGAATATTCCGAAAGCTACGT 57.993 39.130 12.90 0.00 0.00 3.57
235 236 5.041287 TGAGTGAATATTCCGAAAGCTACG 58.959 41.667 12.90 6.30 0.00 3.51
236 237 6.535508 AGTTGAGTGAATATTCCGAAAGCTAC 59.464 38.462 12.90 2.02 0.00 3.58
237 238 6.535150 CAGTTGAGTGAATATTCCGAAAGCTA 59.465 38.462 12.90 0.00 0.00 3.32
238 239 5.352569 CAGTTGAGTGAATATTCCGAAAGCT 59.647 40.000 12.90 2.57 0.00 3.74
239 240 5.351465 TCAGTTGAGTGAATATTCCGAAAGC 59.649 40.000 12.90 0.40 0.00 3.51
240 241 6.968131 TCAGTTGAGTGAATATTCCGAAAG 57.032 37.500 12.90 0.00 0.00 2.62
241 242 6.708502 TGTTCAGTTGAGTGAATATTCCGAAA 59.291 34.615 12.90 0.21 38.68 3.46
242 243 6.227522 TGTTCAGTTGAGTGAATATTCCGAA 58.772 36.000 12.90 0.00 38.68 4.30
243 244 5.789521 TGTTCAGTTGAGTGAATATTCCGA 58.210 37.500 12.90 0.00 38.68 4.55
244 245 6.480524 TTGTTCAGTTGAGTGAATATTCCG 57.519 37.500 12.90 0.00 38.68 4.30
245 246 7.756722 CCATTTGTTCAGTTGAGTGAATATTCC 59.243 37.037 12.90 4.63 38.68 3.01
246 247 8.514594 TCCATTTGTTCAGTTGAGTGAATATTC 58.485 33.333 8.60 8.60 38.68 1.75
247 248 8.408043 TCCATTTGTTCAGTTGAGTGAATATT 57.592 30.769 4.70 0.00 38.68 1.28
248 249 8.585471 ATCCATTTGTTCAGTTGAGTGAATAT 57.415 30.769 4.70 0.00 38.68 1.28
249 250 7.665145 TGATCCATTTGTTCAGTTGAGTGAATA 59.335 33.333 4.70 0.00 38.68 1.75
250 251 6.491062 TGATCCATTTGTTCAGTTGAGTGAAT 59.509 34.615 4.70 0.00 38.68 2.57
251 252 5.827267 TGATCCATTTGTTCAGTTGAGTGAA 59.173 36.000 0.00 0.00 33.95 3.18
252 253 5.375773 TGATCCATTTGTTCAGTTGAGTGA 58.624 37.500 0.00 0.00 0.00 3.41
253 254 5.335426 CCTGATCCATTTGTTCAGTTGAGTG 60.335 44.000 0.00 0.00 36.06 3.51
254 255 4.763793 CCTGATCCATTTGTTCAGTTGAGT 59.236 41.667 0.00 0.00 36.06 3.41
255 256 4.157289 CCCTGATCCATTTGTTCAGTTGAG 59.843 45.833 0.00 0.00 36.06 3.02
256 257 4.081406 CCCTGATCCATTTGTTCAGTTGA 58.919 43.478 0.00 0.00 36.06 3.18
257 258 3.828451 ACCCTGATCCATTTGTTCAGTTG 59.172 43.478 0.00 0.00 36.06 3.16
258 259 4.118168 ACCCTGATCCATTTGTTCAGTT 57.882 40.909 0.00 0.00 36.06 3.16
259 260 3.814504 ACCCTGATCCATTTGTTCAGT 57.185 42.857 0.00 0.00 36.06 3.41
260 261 6.588719 TTTTACCCTGATCCATTTGTTCAG 57.411 37.500 0.00 0.00 37.27 3.02
261 262 6.780031 TCTTTTTACCCTGATCCATTTGTTCA 59.220 34.615 0.00 0.00 0.00 3.18
262 263 7.039714 ACTCTTTTTACCCTGATCCATTTGTTC 60.040 37.037 0.00 0.00 0.00 3.18
263 264 6.782494 ACTCTTTTTACCCTGATCCATTTGTT 59.218 34.615 0.00 0.00 0.00 2.83
264 265 6.209391 CACTCTTTTTACCCTGATCCATTTGT 59.791 38.462 0.00 0.00 0.00 2.83
265 266 6.624423 CACTCTTTTTACCCTGATCCATTTG 58.376 40.000 0.00 0.00 0.00 2.32
266 267 5.185828 GCACTCTTTTTACCCTGATCCATTT 59.814 40.000 0.00 0.00 0.00 2.32
267 268 4.706962 GCACTCTTTTTACCCTGATCCATT 59.293 41.667 0.00 0.00 0.00 3.16
268 269 4.273318 GCACTCTTTTTACCCTGATCCAT 58.727 43.478 0.00 0.00 0.00 3.41
269 270 3.561313 GGCACTCTTTTTACCCTGATCCA 60.561 47.826 0.00 0.00 0.00 3.41
270 271 3.017442 GGCACTCTTTTTACCCTGATCC 58.983 50.000 0.00 0.00 0.00 3.36
271 272 3.017442 GGGCACTCTTTTTACCCTGATC 58.983 50.000 0.00 0.00 37.59 2.92
272 273 2.378547 TGGGCACTCTTTTTACCCTGAT 59.621 45.455 0.00 0.00 41.44 2.90
273 274 1.777878 TGGGCACTCTTTTTACCCTGA 59.222 47.619 0.00 0.00 41.44 3.86
274 275 2.286365 TGGGCACTCTTTTTACCCTG 57.714 50.000 0.00 0.00 41.44 4.45
275 276 2.378547 TGATGGGCACTCTTTTTACCCT 59.621 45.455 0.00 0.00 41.44 4.34
276 277 2.492088 GTGATGGGCACTCTTTTTACCC 59.508 50.000 0.00 0.00 44.27 3.69
277 278 3.850122 GTGATGGGCACTCTTTTTACC 57.150 47.619 0.00 0.00 44.27 2.85
287 288 2.408271 TCAGAATGAGTGATGGGCAC 57.592 50.000 0.00 0.00 42.56 5.01
299 300 4.074259 TCCACTTCCACACAATCAGAATG 58.926 43.478 0.00 0.00 37.54 2.67
300 301 4.371624 TCCACTTCCACACAATCAGAAT 57.628 40.909 0.00 0.00 0.00 2.40
301 302 3.855255 TCCACTTCCACACAATCAGAA 57.145 42.857 0.00 0.00 0.00 3.02
302 303 3.476552 GTTCCACTTCCACACAATCAGA 58.523 45.455 0.00 0.00 0.00 3.27
303 304 2.554032 GGTTCCACTTCCACACAATCAG 59.446 50.000 0.00 0.00 0.00 2.90
304 305 2.582052 GGTTCCACTTCCACACAATCA 58.418 47.619 0.00 0.00 0.00 2.57
305 306 1.886542 GGGTTCCACTTCCACACAATC 59.113 52.381 0.00 0.00 0.00 2.67
306 307 1.499007 AGGGTTCCACTTCCACACAAT 59.501 47.619 0.00 0.00 0.00 2.71
307 308 0.923358 AGGGTTCCACTTCCACACAA 59.077 50.000 0.00 0.00 0.00 3.33
308 309 0.182537 CAGGGTTCCACTTCCACACA 59.817 55.000 0.00 0.00 0.00 3.72
309 310 1.172812 GCAGGGTTCCACTTCCACAC 61.173 60.000 0.00 0.00 0.00 3.82
310 311 1.150536 GCAGGGTTCCACTTCCACA 59.849 57.895 0.00 0.00 0.00 4.17
311 312 1.966451 CGCAGGGTTCCACTTCCAC 60.966 63.158 0.00 0.00 0.00 4.02
312 313 2.429930 CGCAGGGTTCCACTTCCA 59.570 61.111 0.00 0.00 0.00 3.53
325 326 1.019278 AGGTTATTCACGCACCGCAG 61.019 55.000 0.00 0.00 35.54 5.18
326 327 1.004320 AGGTTATTCACGCACCGCA 60.004 52.632 0.00 0.00 35.54 5.69
327 328 1.713830 GAGGTTATTCACGCACCGC 59.286 57.895 0.00 0.00 35.54 5.68
328 329 1.418342 CCGAGGTTATTCACGCACCG 61.418 60.000 0.00 0.00 35.54 4.94
329 330 1.702491 GCCGAGGTTATTCACGCACC 61.702 60.000 0.00 0.00 0.00 5.01
330 331 1.017177 TGCCGAGGTTATTCACGCAC 61.017 55.000 0.00 0.00 0.00 5.34
331 332 1.017177 GTGCCGAGGTTATTCACGCA 61.017 55.000 0.00 0.00 0.00 5.24
332 333 1.017177 TGTGCCGAGGTTATTCACGC 61.017 55.000 0.00 0.00 0.00 5.34
333 334 1.327460 CATGTGCCGAGGTTATTCACG 59.673 52.381 0.00 0.00 0.00 4.35
334 335 2.627945 TCATGTGCCGAGGTTATTCAC 58.372 47.619 0.00 0.00 0.00 3.18
335 336 3.466836 GATCATGTGCCGAGGTTATTCA 58.533 45.455 0.00 0.00 0.00 2.57
336 337 2.476619 CGATCATGTGCCGAGGTTATTC 59.523 50.000 0.00 0.00 0.00 1.75
337 338 2.483876 CGATCATGTGCCGAGGTTATT 58.516 47.619 0.00 0.00 0.00 1.40
338 339 1.270305 CCGATCATGTGCCGAGGTTAT 60.270 52.381 0.00 0.00 0.00 1.89
339 340 0.104120 CCGATCATGTGCCGAGGTTA 59.896 55.000 0.00 0.00 0.00 2.85
340 341 1.153369 CCGATCATGTGCCGAGGTT 60.153 57.895 0.00 0.00 0.00 3.50
341 342 2.501128 CCGATCATGTGCCGAGGT 59.499 61.111 0.00 0.00 0.00 3.85
342 343 2.969238 GCCGATCATGTGCCGAGG 60.969 66.667 0.00 0.00 0.00 4.63
343 344 2.107750 AGCCGATCATGTGCCGAG 59.892 61.111 0.00 0.00 0.00 4.63
344 345 2.202919 CAGCCGATCATGTGCCGA 60.203 61.111 0.00 0.00 0.00 5.54
345 346 3.274586 CCAGCCGATCATGTGCCG 61.275 66.667 0.00 0.00 0.00 5.69
346 347 3.589881 GCCAGCCGATCATGTGCC 61.590 66.667 0.00 0.00 0.00 5.01
347 348 3.589881 GGCCAGCCGATCATGTGC 61.590 66.667 0.00 0.00 0.00 4.57
348 349 1.890979 GAGGCCAGCCGATCATGTG 60.891 63.158 5.01 0.00 41.95 3.21
349 350 1.703014 ATGAGGCCAGCCGATCATGT 61.703 55.000 5.01 0.00 41.95 3.21
350 351 1.072678 ATGAGGCCAGCCGATCATG 59.927 57.895 5.01 0.00 41.95 3.07
351 352 1.072678 CATGAGGCCAGCCGATCAT 59.927 57.895 5.01 7.43 41.95 2.45
352 353 2.507452 CATGAGGCCAGCCGATCA 59.493 61.111 5.01 2.92 41.95 2.92
353 354 2.281345 CCATGAGGCCAGCCGATC 60.281 66.667 5.01 0.00 41.95 3.69
354 355 2.769621 TCCATGAGGCCAGCCGAT 60.770 61.111 5.01 0.00 41.95 4.18
355 356 3.785859 GTCCATGAGGCCAGCCGA 61.786 66.667 5.01 0.00 41.95 5.54
356 357 4.864334 GGTCCATGAGGCCAGCCG 62.864 72.222 5.01 0.00 41.95 5.52
357 358 4.512914 GGGTCCATGAGGCCAGCC 62.513 72.222 5.01 0.00 34.08 4.85
358 359 3.415087 AGGGTCCATGAGGCCAGC 61.415 66.667 5.01 0.00 34.08 4.85
359 360 2.593978 CAGGGTCCATGAGGCCAG 59.406 66.667 5.01 0.00 34.08 4.85
360 361 3.016971 CCAGGGTCCATGAGGCCA 61.017 66.667 5.01 0.00 34.08 5.36
361 362 2.692368 TCCAGGGTCCATGAGGCC 60.692 66.667 4.74 0.00 33.74 5.19
362 363 2.300967 TGTCCAGGGTCCATGAGGC 61.301 63.158 4.74 0.00 33.74 4.70
363 364 1.604378 GTGTCCAGGGTCCATGAGG 59.396 63.158 4.74 0.00 0.00 3.86
364 365 1.219124 CGTGTCCAGGGTCCATGAG 59.781 63.158 4.74 0.00 0.00 2.90
365 366 2.954684 GCGTGTCCAGGGTCCATGA 61.955 63.158 4.74 0.00 0.00 3.07
366 367 2.436646 GCGTGTCCAGGGTCCATG 60.437 66.667 0.00 0.00 0.00 3.66
367 368 4.082523 CGCGTGTCCAGGGTCCAT 62.083 66.667 0.00 0.00 0.00 3.41
386 387 2.365105 TCCTCCATGGGACGGACC 60.365 66.667 13.02 0.00 36.20 4.46
387 388 3.095347 GCTCCTCCATGGGACGGAC 62.095 68.421 13.02 7.08 36.20 4.79
388 389 2.764128 GCTCCTCCATGGGACGGA 60.764 66.667 13.02 14.17 36.20 4.69
389 390 3.083349 TGCTCCTCCATGGGACGG 61.083 66.667 13.02 10.46 36.20 4.79
390 391 2.060383 TCTGCTCCTCCATGGGACG 61.060 63.158 13.02 0.51 36.20 4.79
391 392 0.980231 AGTCTGCTCCTCCATGGGAC 60.980 60.000 13.02 9.36 36.20 4.46
392 393 0.636647 TAGTCTGCTCCTCCATGGGA 59.363 55.000 13.02 0.60 36.20 4.37
393 394 0.755686 GTAGTCTGCTCCTCCATGGG 59.244 60.000 13.02 2.26 36.20 4.00
394 395 1.786937 AGTAGTCTGCTCCTCCATGG 58.213 55.000 4.97 4.97 37.10 3.66
395 396 3.561143 ACTAGTAGTCTGCTCCTCCATG 58.439 50.000 0.00 0.00 0.00 3.66
396 397 3.963476 ACTAGTAGTCTGCTCCTCCAT 57.037 47.619 0.00 0.00 0.00 3.41
397 398 3.741245 AACTAGTAGTCTGCTCCTCCA 57.259 47.619 2.58 0.00 0.00 3.86
398 399 4.338964 GGTAAACTAGTAGTCTGCTCCTCC 59.661 50.000 2.58 0.00 0.00 4.30
399 400 4.035441 CGGTAAACTAGTAGTCTGCTCCTC 59.965 50.000 2.58 0.00 0.00 3.71
400 401 3.946558 CGGTAAACTAGTAGTCTGCTCCT 59.053 47.826 2.58 0.00 0.00 3.69
401 402 3.693578 ACGGTAAACTAGTAGTCTGCTCC 59.306 47.826 2.58 2.28 0.00 4.70
402 403 4.961435 ACGGTAAACTAGTAGTCTGCTC 57.039 45.455 2.58 0.00 0.00 4.26
403 404 4.763793 TCAACGGTAAACTAGTAGTCTGCT 59.236 41.667 2.58 0.00 0.00 4.24
404 405 5.051891 TCAACGGTAAACTAGTAGTCTGC 57.948 43.478 2.58 0.00 0.00 4.26
405 406 6.370994 TCTCTCAACGGTAAACTAGTAGTCTG 59.629 42.308 2.58 0.00 0.00 3.51
406 407 6.471146 TCTCTCAACGGTAAACTAGTAGTCT 58.529 40.000 2.58 0.00 0.00 3.24
407 408 6.734104 TCTCTCAACGGTAAACTAGTAGTC 57.266 41.667 2.58 0.00 0.00 2.59
408 409 7.700022 ATTCTCTCAACGGTAAACTAGTAGT 57.300 36.000 0.00 0.00 0.00 2.73
409 410 7.701501 GGAATTCTCTCAACGGTAAACTAGTAG 59.298 40.741 5.23 0.00 0.00 2.57
410 411 7.395489 AGGAATTCTCTCAACGGTAAACTAGTA 59.605 37.037 5.23 0.00 0.00 1.82
411 412 6.210984 AGGAATTCTCTCAACGGTAAACTAGT 59.789 38.462 5.23 0.00 0.00 2.57
412 413 6.631962 AGGAATTCTCTCAACGGTAAACTAG 58.368 40.000 5.23 0.00 0.00 2.57
413 414 6.600882 AGGAATTCTCTCAACGGTAAACTA 57.399 37.500 5.23 0.00 0.00 2.24
414 415 5.485209 AGGAATTCTCTCAACGGTAAACT 57.515 39.130 5.23 0.00 0.00 2.66
415 416 5.932883 AGAAGGAATTCTCTCAACGGTAAAC 59.067 40.000 5.23 0.00 0.00 2.01
416 417 6.110411 AGAAGGAATTCTCTCAACGGTAAA 57.890 37.500 5.23 0.00 0.00 2.01
417 418 5.740290 AGAAGGAATTCTCTCAACGGTAA 57.260 39.130 5.23 0.00 0.00 2.85
418 419 6.605995 TGATAGAAGGAATTCTCTCAACGGTA 59.394 38.462 5.23 0.00 33.19 4.02
419 420 5.422331 TGATAGAAGGAATTCTCTCAACGGT 59.578 40.000 5.23 0.00 33.19 4.83
420 421 5.751028 GTGATAGAAGGAATTCTCTCAACGG 59.249 44.000 5.23 0.00 36.41 4.44
421 422 6.254589 GTGTGATAGAAGGAATTCTCTCAACG 59.745 42.308 5.23 0.00 36.41 4.10
422 423 7.327214 AGTGTGATAGAAGGAATTCTCTCAAC 58.673 38.462 5.23 8.19 36.41 3.18
442 443 7.383102 AGGCATCAAATTTAAGAGTAGTGTG 57.617 36.000 0.00 0.00 0.00 3.82
538 539 3.287312 ACGATTTAACAGAACCGACGA 57.713 42.857 0.00 0.00 0.00 4.20
631 635 0.875728 AGTCTCTGTTCGACTCGTGG 59.124 55.000 0.00 0.00 37.13 4.94
1461 1672 6.015434 CCCTTAACCTATGTTTTGTGCTCTTT 60.015 38.462 0.00 0.00 35.87 2.52
1654 1868 4.522722 TCGTGGTCAAAAGGTTGTTTTT 57.477 36.364 0.00 0.00 36.07 1.94
1659 1873 3.708563 ACAATCGTGGTCAAAAGGTTG 57.291 42.857 0.00 0.00 35.95 3.77
2255 2475 0.099968 CTGTCATCATTGCTTGGCCG 59.900 55.000 0.00 0.00 0.00 6.13
2265 2485 5.222130 ACACTTCTTTTACCCCTGTCATCAT 60.222 40.000 0.00 0.00 0.00 2.45
2363 2583 2.301346 GCCCATAGGTGGTCATCAAAG 58.699 52.381 0.00 0.00 44.48 2.77
2636 2856 6.586344 TGCTACTTTTCTCCTATCATTCCAG 58.414 40.000 0.00 0.00 0.00 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.