Multiple sequence alignment - TraesCS5D01G467600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G467600 chr5D 100.000 3676 0 0 1 3676 509530964 509527289 0.000000e+00 6789
1 TraesCS5D01G467600 chr5D 99.194 124 1 0 3551 3674 503345944 503345821 1.330000e-54 224
2 TraesCS5D01G467600 chr5B 94.486 1324 53 6 990 2307 640155720 640154411 0.000000e+00 2023
3 TraesCS5D01G467600 chr5B 86.848 1285 72 38 2298 3551 640154384 640153166 0.000000e+00 1347
4 TraesCS5D01G467600 chr7D 97.371 989 26 0 1 989 595768568 595767580 0.000000e+00 1683
5 TraesCS5D01G467600 chr7D 97.175 991 26 2 1 990 606785699 606786688 0.000000e+00 1674
6 TraesCS5D01G467600 chr7D 96.881 994 31 0 1 994 582065980 582064987 0.000000e+00 1664
7 TraesCS5D01G467600 chr1D 97.169 989 27 1 1 989 7855637 7856624 0.000000e+00 1670
8 TraesCS5D01G467600 chr1D 96.982 994 26 3 1 994 398565258 398564269 0.000000e+00 1666
9 TraesCS5D01G467600 chr1D 99.206 126 1 0 3551 3676 244757638 244757513 1.030000e-55 228
10 TraesCS5D01G467600 chr1D 98.413 126 2 0 3551 3676 244190446 244190321 4.780000e-54 222
11 TraesCS5D01G467600 chr4D 96.881 994 31 0 1 994 483375691 483374698 0.000000e+00 1664
12 TraesCS5D01G467600 chr4D 96.970 990 29 1 1 990 484881293 484882281 0.000000e+00 1661
13 TraesCS5D01G467600 chr4D 99.206 126 1 0 3551 3676 19907199 19907074 1.030000e-55 228
14 TraesCS5D01G467600 chr3D 96.774 992 30 2 1 991 589614482 589615472 0.000000e+00 1653
15 TraesCS5D01G467600 chr3D 96.680 994 31 2 1 993 591246732 591245740 0.000000e+00 1652
16 TraesCS5D01G467600 chr5A 87.558 860 84 9 1469 2307 636677798 636676941 0.000000e+00 974
17 TraesCS5D01G467600 chr5A 92.723 481 29 1 990 1464 636695556 636695076 0.000000e+00 689
18 TraesCS5D01G467600 chr5A 82.058 719 68 26 2419 3111 636676761 636676078 1.150000e-154 556
19 TraesCS5D01G467600 chr5A 87.636 275 29 5 3277 3551 636676086 636675817 7.660000e-82 315
20 TraesCS5D01G467600 chrUn 99.206 126 1 0 3551 3676 422744972 422744847 1.030000e-55 228
21 TraesCS5D01G467600 chrUn 98.413 126 2 0 3551 3676 424637422 424637547 4.780000e-54 222
22 TraesCS5D01G467600 chr3A 99.206 126 1 0 3551 3676 105550445 105550570 1.030000e-55 228
23 TraesCS5D01G467600 chr2B 99.206 126 1 0 3551 3676 683734910 683734785 1.030000e-55 228
24 TraesCS5D01G467600 chr1A 99.206 126 1 0 3551 3676 554488539 554488414 1.030000e-55 228


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G467600 chr5D 509527289 509530964 3675 True 6789 6789 100.000000 1 3676 1 chr5D.!!$R2 3675
1 TraesCS5D01G467600 chr5B 640153166 640155720 2554 True 1685 2023 90.667000 990 3551 2 chr5B.!!$R1 2561
2 TraesCS5D01G467600 chr7D 595767580 595768568 988 True 1683 1683 97.371000 1 989 1 chr7D.!!$R2 988
3 TraesCS5D01G467600 chr7D 606785699 606786688 989 False 1674 1674 97.175000 1 990 1 chr7D.!!$F1 989
4 TraesCS5D01G467600 chr7D 582064987 582065980 993 True 1664 1664 96.881000 1 994 1 chr7D.!!$R1 993
5 TraesCS5D01G467600 chr1D 7855637 7856624 987 False 1670 1670 97.169000 1 989 1 chr1D.!!$F1 988
6 TraesCS5D01G467600 chr1D 398564269 398565258 989 True 1666 1666 96.982000 1 994 1 chr1D.!!$R3 993
7 TraesCS5D01G467600 chr4D 483374698 483375691 993 True 1664 1664 96.881000 1 994 1 chr4D.!!$R2 993
8 TraesCS5D01G467600 chr4D 484881293 484882281 988 False 1661 1661 96.970000 1 990 1 chr4D.!!$F1 989
9 TraesCS5D01G467600 chr3D 589614482 589615472 990 False 1653 1653 96.774000 1 991 1 chr3D.!!$F1 990
10 TraesCS5D01G467600 chr3D 591245740 591246732 992 True 1652 1652 96.680000 1 993 1 chr3D.!!$R1 992
11 TraesCS5D01G467600 chr5A 636675817 636677798 1981 True 615 974 85.750667 1469 3551 3 chr5A.!!$R2 2082

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
932 936 0.256464 TTTGGTCCCGGTTTGTGAGT 59.744 50.0 0.0 0.0 0.00 3.41 F
1027 1031 0.178068 CTCAATGACTACCCCCACCG 59.822 60.0 0.0 0.0 0.00 4.94 F
1130 1140 0.517316 ATCTTCCGCTTTGAACGCAC 59.483 50.0 0.0 0.0 0.00 5.34 F
1507 1517 0.611714 GGACGCCTTGGACTTCCTTA 59.388 55.0 0.0 0.0 36.82 2.69 F
1991 2023 0.687920 TGGAAACGTATCAGGGCACA 59.312 50.0 0.0 0.0 0.00 4.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2555 2657 0.100682 TCTCTATGTGCGACCGAAGC 59.899 55.000 0.0 0.0 0.0 3.86 R
2627 2732 1.132643 ACTCGTTGGCATCTACTCGTC 59.867 52.381 0.0 0.0 0.0 4.20 R
2628 2733 1.135373 CACTCGTTGGCATCTACTCGT 60.135 52.381 0.0 0.0 0.0 4.18 R
2629 2734 1.135373 ACACTCGTTGGCATCTACTCG 60.135 52.381 0.0 0.0 0.0 4.18 R
3175 3314 1.211703 TCGCCCCATGATTTTAGCTCA 59.788 47.619 0.0 0.0 0.0 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
195 196 7.734942 AGCTAAATGACCCTGAAATTGAAAAA 58.265 30.769 0.00 0.00 0.00 1.94
306 308 1.000060 GCAAAAGCTGGATGCACTTCA 60.000 47.619 12.31 0.00 45.94 3.02
429 431 8.658609 CAGACTTTTTGTGTGTTCAAAATGAAT 58.341 29.630 17.84 8.18 43.60 2.57
911 915 1.228154 GAACCGGGACAGTTGCCTT 60.228 57.895 6.32 0.00 0.00 4.35
926 930 0.826256 GCCTTCTTTGGTCCCGGTTT 60.826 55.000 0.00 0.00 0.00 3.27
932 936 0.256464 TTTGGTCCCGGTTTGTGAGT 59.744 50.000 0.00 0.00 0.00 3.41
966 970 0.749049 GGTATTACGAGGGCCGAACT 59.251 55.000 0.00 0.00 41.76 3.01
1001 1005 3.762288 TCTACTAGTGTTTGCCTCACGAT 59.238 43.478 5.39 0.00 40.28 3.73
1023 1027 1.880941 ACTCCTCAATGACTACCCCC 58.119 55.000 0.00 0.00 0.00 5.40
1027 1031 0.178068 CTCAATGACTACCCCCACCG 59.822 60.000 0.00 0.00 0.00 4.94
1084 1088 2.097038 CAGGAGCTTGAGTTCGCCG 61.097 63.158 0.00 0.00 0.00 6.46
1115 1125 1.454479 CCTGCCCGGCATCAATCTT 60.454 57.895 13.86 0.00 38.13 2.40
1118 1128 2.546494 GCCCGGCATCAATCTTCCG 61.546 63.158 3.91 0.00 41.41 4.30
1124 1134 1.745087 GGCATCAATCTTCCGCTTTGA 59.255 47.619 0.00 0.00 34.18 2.69
1127 1137 3.419915 CATCAATCTTCCGCTTTGAACG 58.580 45.455 0.00 0.00 33.45 3.95
1130 1140 0.517316 ATCTTCCGCTTTGAACGCAC 59.483 50.000 0.00 0.00 0.00 5.34
1137 1147 2.966309 CTTTGAACGCACCCTCCGC 61.966 63.158 0.00 0.00 0.00 5.54
1246 1256 3.126225 ACGTCTCGGAGTCCTCGC 61.126 66.667 7.77 0.00 0.00 5.03
1348 1358 4.104102 TCAACTCCCTCAGCCTTAGAAAAA 59.896 41.667 0.00 0.00 0.00 1.94
1452 1462 8.613060 TGATTCATCTGTATAAGATTTGGAGC 57.387 34.615 0.00 0.00 43.52 4.70
1507 1517 0.611714 GGACGCCTTGGACTTCCTTA 59.388 55.000 0.00 0.00 36.82 2.69
1568 1578 6.755141 TCACGGTCTTAAGTTATATGTCTTGC 59.245 38.462 1.63 0.00 0.00 4.01
1576 1586 5.957771 AGTTATATGTCTTGCCTTCAGGA 57.042 39.130 0.00 0.00 37.39 3.86
1577 1587 5.923204 AGTTATATGTCTTGCCTTCAGGAG 58.077 41.667 0.00 0.00 37.39 3.69
1593 1603 2.507471 CAGGAGGAGGCTTCCAGTTAAT 59.493 50.000 18.32 0.00 46.64 1.40
1638 1660 3.084070 GAAATCACATTTCATCCGCCC 57.916 47.619 4.43 0.00 46.05 6.13
1783 1811 5.471456 GTCCGCTTGATGAGATTATTTCCAT 59.529 40.000 0.00 0.00 0.00 3.41
1833 1861 6.480651 TGGCGATTTCGTAGCTTTTGATATTA 59.519 34.615 0.00 0.00 42.22 0.98
1851 1883 7.485810 TGATATTATTGCTATTCATGCATGCC 58.514 34.615 22.25 7.81 40.34 4.40
1991 2023 0.687920 TGGAAACGTATCAGGGCACA 59.312 50.000 0.00 0.00 0.00 4.57
1993 2025 2.290641 TGGAAACGTATCAGGGCACATT 60.291 45.455 0.00 0.00 0.00 2.71
2161 2193 3.304190 GGTGCTCGGTTTCGTTTTACAAT 60.304 43.478 0.00 0.00 37.69 2.71
2262 2294 7.437713 AGATGTTGAAACTGGGTATGATCTA 57.562 36.000 0.00 0.00 0.00 1.98
2266 2298 8.506168 TGTTGAAACTGGGTATGATCTATTTC 57.494 34.615 0.00 0.00 0.00 2.17
2267 2299 8.106462 TGTTGAAACTGGGTATGATCTATTTCA 58.894 33.333 0.00 0.00 34.07 2.69
2386 2456 1.073025 GTGGCCTCACACACCATCA 59.927 57.895 3.32 0.00 43.13 3.07
2518 2619 5.236263 GTGTTTGGTTGGGCTTAATTTTGAG 59.764 40.000 0.00 0.00 0.00 3.02
2555 2657 3.251004 GCAACAGAAGAAAGTGTACCCTG 59.749 47.826 0.00 0.00 0.00 4.45
2722 2831 5.124776 GCATTTAGGCATGTAGTACACCAAA 59.875 40.000 4.80 7.36 0.00 3.28
2754 2863 7.940688 TGTTTATGAGTGCATGATCCTGAATAT 59.059 33.333 0.00 0.00 35.94 1.28
2759 2868 7.512130 TGAGTGCATGATCCTGAATATACTTT 58.488 34.615 0.00 0.00 0.00 2.66
2760 2869 7.443272 TGAGTGCATGATCCTGAATATACTTTG 59.557 37.037 0.00 0.00 0.00 2.77
2763 2872 8.408601 GTGCATGATCCTGAATATACTTTGTTT 58.591 33.333 0.00 0.00 0.00 2.83
2838 2949 4.096382 TCCTTTTTGTGCTTGTTGAGTCTC 59.904 41.667 0.00 0.00 0.00 3.36
2843 2954 4.400529 TGTGCTTGTTGAGTCTCTGTAA 57.599 40.909 0.65 0.00 0.00 2.41
2844 2955 4.765273 TGTGCTTGTTGAGTCTCTGTAAA 58.235 39.130 0.65 0.00 0.00 2.01
2892 3008 0.673437 AAACCTTGCGGACAACATGG 59.327 50.000 0.00 0.00 38.11 3.66
2932 3049 4.351874 AGCACCTTCAGTTTACTGCTTA 57.648 40.909 5.00 0.00 43.46 3.09
2933 3050 4.065789 AGCACCTTCAGTTTACTGCTTAC 58.934 43.478 5.00 0.00 43.46 2.34
2934 3051 3.813166 GCACCTTCAGTTTACTGCTTACA 59.187 43.478 5.00 0.00 43.46 2.41
2936 3053 5.048713 GCACCTTCAGTTTACTGCTTACATT 60.049 40.000 5.00 0.00 43.46 2.71
2937 3054 6.515035 GCACCTTCAGTTTACTGCTTACATTT 60.515 38.462 5.00 0.00 43.46 2.32
2939 3056 8.730680 CACCTTCAGTTTACTGCTTACATTTAT 58.269 33.333 5.00 0.00 43.46 1.40
2970 3105 3.135712 TGGGGCTATGTCGTTGATAACAT 59.864 43.478 0.00 0.00 39.38 2.71
3034 3169 5.103290 TGAAGCTTTTATTTCACCGTGTC 57.897 39.130 0.00 0.00 0.00 3.67
3036 3171 5.298276 TGAAGCTTTTATTTCACCGTGTCTT 59.702 36.000 0.00 0.00 0.00 3.01
3076 3211 7.092137 TGCTTCAAATATCTTGTGGAGATTG 57.908 36.000 0.00 0.00 42.55 2.67
3111 3246 3.242091 GCGCTACATATGATTACGCATGG 60.242 47.826 22.41 0.20 43.95 3.66
3116 3251 3.999001 ACATATGATTACGCATGGAGCAG 59.001 43.478 10.38 0.00 46.13 4.24
3131 3266 4.635223 TGGAGCAGTGCTATCATATGAAC 58.365 43.478 19.77 3.25 39.88 3.18
3132 3267 4.101430 TGGAGCAGTGCTATCATATGAACA 59.899 41.667 19.77 5.95 39.88 3.18
3158 3297 8.850156 AGACCTTACAGAAAGTTTACGTACTAA 58.150 33.333 0.00 0.00 32.89 2.24
3172 3311 3.956199 ACGTACTAATTCAATCGGGAGGA 59.044 43.478 0.00 0.00 0.00 3.71
3175 3314 5.451520 CGTACTAATTCAATCGGGAGGAGTT 60.452 44.000 0.00 0.00 0.00 3.01
3201 3342 3.317603 AAAATCATGGGGCGAACAAAG 57.682 42.857 0.00 0.00 0.00 2.77
3205 3346 1.349688 TCATGGGGCGAACAAAGTACT 59.650 47.619 0.00 0.00 0.00 2.73
3210 3351 3.514706 TGGGGCGAACAAAGTACTACATA 59.485 43.478 0.00 0.00 0.00 2.29
3213 3354 5.041940 GGGCGAACAAAGTACTACATAGAG 58.958 45.833 0.00 0.00 0.00 2.43
3236 3377 9.628500 AGAGTTTTTCTAAAAAGGTGTATGTCT 57.372 29.630 0.96 0.00 38.44 3.41
3237 3378 9.665264 GAGTTTTTCTAAAAAGGTGTATGTCTG 57.335 33.333 0.96 0.00 38.44 3.51
3238 3379 9.185680 AGTTTTTCTAAAAAGGTGTATGTCTGT 57.814 29.630 0.96 0.00 38.44 3.41
3239 3380 9.797556 GTTTTTCTAAAAAGGTGTATGTCTGTT 57.202 29.630 0.96 0.00 38.44 3.16
3241 3382 8.740123 TTTCTAAAAAGGTGTATGTCTGTTCA 57.260 30.769 0.00 0.00 0.00 3.18
3242 3383 8.740123 TTCTAAAAAGGTGTATGTCTGTTCAA 57.260 30.769 0.00 0.00 0.00 2.69
3243 3384 8.740123 TCTAAAAAGGTGTATGTCTGTTCAAA 57.260 30.769 0.00 0.00 0.00 2.69
3244 3385 9.179909 TCTAAAAAGGTGTATGTCTGTTCAAAA 57.820 29.630 0.00 0.00 0.00 2.44
3245 3386 9.796120 CTAAAAAGGTGTATGTCTGTTCAAAAA 57.204 29.630 0.00 0.00 0.00 1.94
3275 3416 8.000780 AGGTGTATGCAGGAATAGAATTTTTC 57.999 34.615 0.00 0.00 0.00 2.29
3304 3445 4.941263 TGTGTGACCTATTATGGAGTTTGC 59.059 41.667 0.00 0.00 0.00 3.68
3445 3586 3.305516 GCTTGGCCTTGGGGTGTG 61.306 66.667 3.32 0.00 34.45 3.82
3518 3659 4.104738 TGTTCTTGACAGGGAGAATCCTTT 59.895 41.667 0.00 0.00 45.58 3.11
3520 3661 8.658330 TGTTCTTGACAGGGAGAATCCTTTCC 62.658 46.154 0.00 0.00 45.58 3.13
3534 3675 2.031120 CCTTTCCTTTGTCACTTGCCA 58.969 47.619 0.00 0.00 0.00 4.92
3551 3692 7.119699 TCACTTGCCATTTTACTCTGTAATCTG 59.880 37.037 0.00 0.00 0.00 2.90
3552 3693 6.375455 ACTTGCCATTTTACTCTGTAATCTGG 59.625 38.462 11.33 11.33 0.00 3.86
3553 3694 5.815581 TGCCATTTTACTCTGTAATCTGGT 58.184 37.500 14.55 0.00 0.00 4.00
3554 3695 6.953101 TGCCATTTTACTCTGTAATCTGGTA 58.047 36.000 14.55 10.44 0.00 3.25
3555 3696 7.573710 TGCCATTTTACTCTGTAATCTGGTAT 58.426 34.615 14.55 0.00 0.00 2.73
3556 3697 8.052748 TGCCATTTTACTCTGTAATCTGGTATT 58.947 33.333 14.55 0.00 0.00 1.89
3557 3698 8.345565 GCCATTTTACTCTGTAATCTGGTATTG 58.654 37.037 14.55 0.00 0.00 1.90
3558 3699 8.345565 CCATTTTACTCTGTAATCTGGTATTGC 58.654 37.037 0.00 0.00 0.00 3.56
3559 3700 9.113838 CATTTTACTCTGTAATCTGGTATTGCT 57.886 33.333 0.00 0.00 0.00 3.91
3561 3702 9.595823 TTTTACTCTGTAATCTGGTATTGCTAC 57.404 33.333 0.00 0.00 0.00 3.58
3562 3703 6.163135 ACTCTGTAATCTGGTATTGCTACC 57.837 41.667 0.00 0.00 46.65 3.18
3575 3716 2.917701 TGCTACCGCACATGATTTTG 57.082 45.000 0.00 0.00 42.25 2.44
3576 3717 2.431454 TGCTACCGCACATGATTTTGA 58.569 42.857 0.00 0.00 42.25 2.69
3577 3718 2.816672 TGCTACCGCACATGATTTTGAA 59.183 40.909 0.00 0.00 42.25 2.69
3578 3719 3.254411 TGCTACCGCACATGATTTTGAAA 59.746 39.130 0.00 0.00 42.25 2.69
3579 3720 3.853671 GCTACCGCACATGATTTTGAAAG 59.146 43.478 0.00 0.00 35.78 2.62
3580 3721 4.615912 GCTACCGCACATGATTTTGAAAGT 60.616 41.667 0.00 0.00 35.78 2.66
3581 3722 3.900941 ACCGCACATGATTTTGAAAGTC 58.099 40.909 0.00 0.00 0.00 3.01
3582 3723 3.317711 ACCGCACATGATTTTGAAAGTCA 59.682 39.130 5.58 5.58 0.00 3.41
3583 3724 4.022068 ACCGCACATGATTTTGAAAGTCAT 60.022 37.500 9.73 9.73 33.08 3.06
3603 3744 8.809159 AGTCATGATGATATTACTGAAGAACG 57.191 34.615 0.00 0.00 0.00 3.95
3604 3745 8.417106 AGTCATGATGATATTACTGAAGAACGT 58.583 33.333 0.00 0.00 0.00 3.99
3605 3746 8.695284 GTCATGATGATATTACTGAAGAACGTC 58.305 37.037 0.00 0.00 0.00 4.34
3606 3747 8.633561 TCATGATGATATTACTGAAGAACGTCT 58.366 33.333 0.00 0.00 0.00 4.18
3607 3748 9.254133 CATGATGATATTACTGAAGAACGTCTT 57.746 33.333 0.00 0.00 39.87 3.01
3608 3749 9.823647 ATGATGATATTACTGAAGAACGTCTTT 57.176 29.630 0.00 0.00 36.73 2.52
3616 3757 8.516811 TTACTGAAGAACGTCTTTATCAGAAC 57.483 34.615 17.90 0.48 36.73 3.01
3617 3758 6.513180 ACTGAAGAACGTCTTTATCAGAACA 58.487 36.000 17.90 3.91 36.73 3.18
3618 3759 7.155328 ACTGAAGAACGTCTTTATCAGAACAT 58.845 34.615 17.90 0.42 36.73 2.71
3619 3760 7.657761 ACTGAAGAACGTCTTTATCAGAACATT 59.342 33.333 17.90 0.15 36.73 2.71
3620 3761 8.378172 TGAAGAACGTCTTTATCAGAACATTT 57.622 30.769 0.00 0.00 36.73 2.32
3621 3762 8.836413 TGAAGAACGTCTTTATCAGAACATTTT 58.164 29.630 0.00 0.00 36.73 1.82
3622 3763 9.665264 GAAGAACGTCTTTATCAGAACATTTTT 57.335 29.630 0.00 0.00 36.73 1.94
3623 3764 9.450807 AAGAACGTCTTTATCAGAACATTTTTG 57.549 29.630 0.00 0.00 31.57 2.44
3624 3765 7.591426 AGAACGTCTTTATCAGAACATTTTTGC 59.409 33.333 0.00 0.00 31.28 3.68
3625 3766 6.970484 ACGTCTTTATCAGAACATTTTTGCT 58.030 32.000 0.00 0.00 31.28 3.91
3626 3767 7.425606 ACGTCTTTATCAGAACATTTTTGCTT 58.574 30.769 0.00 0.00 31.28 3.91
3627 3768 7.591426 ACGTCTTTATCAGAACATTTTTGCTTC 59.409 33.333 0.00 0.00 31.28 3.86
3628 3769 7.805071 CGTCTTTATCAGAACATTTTTGCTTCT 59.195 33.333 0.00 0.00 31.28 2.85
3629 3770 9.122613 GTCTTTATCAGAACATTTTTGCTTCTC 57.877 33.333 0.00 0.00 31.28 2.87
3630 3771 8.849168 TCTTTATCAGAACATTTTTGCTTCTCA 58.151 29.630 0.00 0.00 0.00 3.27
3631 3772 8.801715 TTTATCAGAACATTTTTGCTTCTCAC 57.198 30.769 0.00 0.00 0.00 3.51
3632 3773 6.645790 ATCAGAACATTTTTGCTTCTCACT 57.354 33.333 0.00 0.00 0.00 3.41
3633 3774 6.455360 TCAGAACATTTTTGCTTCTCACTT 57.545 33.333 0.00 0.00 0.00 3.16
3634 3775 6.866480 TCAGAACATTTTTGCTTCTCACTTT 58.134 32.000 0.00 0.00 0.00 2.66
3635 3776 6.753279 TCAGAACATTTTTGCTTCTCACTTTG 59.247 34.615 0.00 0.00 0.00 2.77
3636 3777 6.019318 CAGAACATTTTTGCTTCTCACTTTGG 60.019 38.462 0.00 0.00 0.00 3.28
3637 3778 4.696455 ACATTTTTGCTTCTCACTTTGGG 58.304 39.130 0.00 0.00 0.00 4.12
3638 3779 2.888834 TTTTGCTTCTCACTTTGGGC 57.111 45.000 0.00 0.00 0.00 5.36
3639 3780 1.774110 TTTGCTTCTCACTTTGGGCA 58.226 45.000 0.00 0.00 0.00 5.36
3640 3781 1.774110 TTGCTTCTCACTTTGGGCAA 58.226 45.000 0.00 0.00 37.35 4.52
3641 3782 1.999648 TGCTTCTCACTTTGGGCAAT 58.000 45.000 0.00 0.00 0.00 3.56
3642 3783 2.318908 TGCTTCTCACTTTGGGCAATT 58.681 42.857 0.00 0.00 0.00 2.32
3643 3784 3.495331 TGCTTCTCACTTTGGGCAATTA 58.505 40.909 0.00 0.00 0.00 1.40
3644 3785 3.507233 TGCTTCTCACTTTGGGCAATTAG 59.493 43.478 0.00 0.00 0.00 1.73
3645 3786 3.674410 GCTTCTCACTTTGGGCAATTAGC 60.674 47.826 0.00 0.00 44.65 3.09
3663 3804 9.617975 GCAATTAGCAATAATCTTTCTATGGAC 57.382 33.333 0.00 0.00 44.79 4.02
3664 3805 9.817365 CAATTAGCAATAATCTTTCTATGGACG 57.183 33.333 0.00 0.00 0.00 4.79
3665 3806 9.561069 AATTAGCAATAATCTTTCTATGGACGT 57.439 29.630 0.00 0.00 0.00 4.34
3666 3807 8.589335 TTAGCAATAATCTTTCTATGGACGTC 57.411 34.615 7.13 7.13 0.00 4.34
3667 3808 5.992217 AGCAATAATCTTTCTATGGACGTCC 59.008 40.000 28.17 28.17 0.00 4.79
3668 3809 5.107453 GCAATAATCTTTCTATGGACGTCCG 60.107 44.000 28.70 15.41 39.43 4.79
3669 3810 3.454371 AATCTTTCTATGGACGTCCGG 57.546 47.619 28.70 20.36 39.43 5.14
3670 3811 2.133281 TCTTTCTATGGACGTCCGGA 57.867 50.000 28.70 22.16 39.43 5.14
3671 3812 2.449464 TCTTTCTATGGACGTCCGGAA 58.551 47.619 28.70 25.89 39.43 4.30
3672 3813 2.827322 TCTTTCTATGGACGTCCGGAAA 59.173 45.455 30.12 30.12 39.43 3.13
3673 3814 3.449737 TCTTTCTATGGACGTCCGGAAAT 59.550 43.478 31.22 22.69 39.43 2.17
3674 3815 3.447918 TTCTATGGACGTCCGGAAATC 57.552 47.619 28.70 6.71 39.43 2.17
3675 3816 2.662866 TCTATGGACGTCCGGAAATCT 58.337 47.619 28.70 9.98 39.43 2.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
63 64 5.913137 TTGAACACACAAAAAGTCTGGAT 57.087 34.783 0.00 0.00 0.00 3.41
195 196 4.640771 TTTCAGAGCTCATTTGTAGGGT 57.359 40.909 17.77 0.00 0.00 4.34
306 308 7.040478 TCGAAAGAGATTGTCCATTTTGTTCAT 60.040 33.333 0.00 0.00 34.84 2.57
387 389 9.586435 CAAAAAGTCTGGAGTTCAAATAAGTTT 57.414 29.630 0.00 0.00 0.00 2.66
429 431 6.487668 TCAAAATCAGTCTCTGCTTTGAATGA 59.512 34.615 16.59 6.16 38.63 2.57
489 491 2.223803 TTATGTTGGGGTTGGCGATT 57.776 45.000 0.00 0.00 0.00 3.34
702 706 2.638363 GGTCAGAGTTTAGTCCCACCTT 59.362 50.000 0.00 0.00 0.00 3.50
804 808 2.126071 CCACGCACGAACCGAGAT 60.126 61.111 0.00 0.00 0.00 2.75
842 846 1.597989 CCATTGGTCCCGGTTCGTA 59.402 57.895 0.00 0.00 0.00 3.43
888 892 1.068585 AACTGTCCCGGTTCGTGAC 59.931 57.895 0.00 0.00 35.05 3.67
911 915 0.547075 TCACAAACCGGGACCAAAGA 59.453 50.000 6.32 0.00 0.00 2.52
926 930 3.605634 CATTAATCCCGGTTCACTCACA 58.394 45.455 0.00 0.00 0.00 3.58
932 936 5.070180 TCGTAATACCATTAATCCCGGTTCA 59.930 40.000 0.00 0.00 34.12 3.18
966 970 6.368779 ACACTAGTAGAAAACAGGGCATTA 57.631 37.500 3.59 0.00 0.00 1.90
1001 1005 2.838202 GGGGTAGTCATTGAGGAGTTCA 59.162 50.000 0.00 0.00 0.00 3.18
1023 1027 3.476031 AAGCCAGTGGTCCACGGTG 62.476 63.158 24.56 16.10 39.64 4.94
1027 1031 2.358737 CCGAAGCCAGTGGTCCAC 60.359 66.667 14.68 14.68 34.10 4.02
1100 1104 2.546494 CGGAAGATTGATGCCGGGC 61.546 63.158 13.32 13.32 40.08 6.13
1115 1125 2.975799 GGGTGCGTTCAAAGCGGA 60.976 61.111 0.00 0.00 37.44 5.54
1118 1128 2.954611 GGAGGGTGCGTTCAAAGC 59.045 61.111 0.00 0.00 0.00 3.51
1137 1147 1.081242 GTGCCTGATGTTTGCCACG 60.081 57.895 0.00 0.00 0.00 4.94
1140 1150 1.080298 GCAGTGCCTGATGTTTGCC 60.080 57.895 2.85 0.00 32.44 4.52
1176 1186 1.550524 GGAAAATGAAGGCCTTGGACC 59.449 52.381 26.25 9.09 0.00 4.46
1185 1195 3.118992 GCTTAAGCTGGGGAAAATGAAGG 60.119 47.826 20.38 0.00 38.21 3.46
1215 1225 0.959553 AGACGTGGACACATTCGAGT 59.040 50.000 0.00 0.00 0.00 4.18
1246 1256 3.869272 GGCGATCAAGCGGTGCAG 61.869 66.667 0.00 0.00 38.18 4.41
1255 1265 4.562425 GGGGCATCCGGCGATCAA 62.562 66.667 9.30 0.00 46.16 2.57
1507 1517 3.820467 TGACGAAATCCTTGCAAATCAGT 59.180 39.130 0.00 0.00 0.00 3.41
1576 1586 3.922171 CAGATTAACTGGAAGCCTCCT 57.078 47.619 2.35 0.00 42.94 3.69
1638 1660 2.500910 TGGGATGCAAAATTAGGCCAAG 59.499 45.455 5.01 0.00 0.00 3.61
1664 1686 7.096551 GCTAAAAACAAGCAATCCCTTAATCA 58.903 34.615 0.00 0.00 39.83 2.57
1733 1761 2.690786 TGTCCAAAATAAGTCGACCCG 58.309 47.619 13.01 0.00 0.00 5.28
1783 1811 1.185618 ACGTGTAGCTCCTCCAAGCA 61.186 55.000 0.00 0.00 45.00 3.91
1833 1861 2.228103 CGAGGCATGCATGAATAGCAAT 59.772 45.455 30.64 6.74 46.27 3.56
1991 2023 5.105957 TGTGGCAAAGTTAACATGCGATAAT 60.106 36.000 22.32 0.00 40.94 1.28
1993 2025 3.753797 TGTGGCAAAGTTAACATGCGATA 59.246 39.130 22.32 16.99 40.94 2.92
2161 2193 1.808343 CAGCATGTTGACAGCTAGCAA 59.192 47.619 18.83 0.00 36.73 3.91
2262 2294 7.198390 GTGATATGCAACAATAGCTGTGAAAT 58.802 34.615 0.00 0.00 38.67 2.17
2266 2298 4.577693 AGGTGATATGCAACAATAGCTGTG 59.422 41.667 0.00 0.00 38.67 3.66
2267 2299 4.785301 AGGTGATATGCAACAATAGCTGT 58.215 39.130 0.00 0.00 41.27 4.40
2386 2456 3.572682 TCACCGTTGAAGAGTGACACTAT 59.427 43.478 8.41 1.54 35.67 2.12
2518 2619 2.927477 CTGTTGCCATCATGAATGCAAC 59.073 45.455 35.37 35.37 44.18 4.17
2538 2640 3.555168 CGAAGCAGGGTACACTTTCTTCT 60.555 47.826 23.78 5.47 30.98 2.85
2555 2657 0.100682 TCTCTATGTGCGACCGAAGC 59.899 55.000 0.00 0.00 0.00 3.86
2627 2732 1.132643 ACTCGTTGGCATCTACTCGTC 59.867 52.381 0.00 0.00 0.00 4.20
2628 2733 1.135373 CACTCGTTGGCATCTACTCGT 60.135 52.381 0.00 0.00 0.00 4.18
2629 2734 1.135373 ACACTCGTTGGCATCTACTCG 60.135 52.381 0.00 0.00 0.00 4.18
2709 2818 6.761099 AAACACATGTTTTGGTGTACTACA 57.239 33.333 4.13 0.00 46.82 2.74
2710 2819 8.561212 TCATAAACACATGTTTTGGTGTACTAC 58.439 33.333 14.78 0.00 46.82 2.73
2711 2820 8.678593 TCATAAACACATGTTTTGGTGTACTA 57.321 30.769 14.78 0.00 46.82 1.82
2712 2821 7.284489 ACTCATAAACACATGTTTTGGTGTACT 59.716 33.333 14.78 0.00 46.82 2.73
2713 2822 7.378461 CACTCATAAACACATGTTTTGGTGTAC 59.622 37.037 14.78 0.00 46.82 2.90
2714 2823 7.421599 CACTCATAAACACATGTTTTGGTGTA 58.578 34.615 14.78 0.00 46.82 2.90
2722 2831 5.963176 TCATGCACTCATAAACACATGTT 57.037 34.783 0.00 0.00 40.50 2.71
2732 2841 8.371571 AGTATATTCAGGATCATGCACTCATA 57.628 34.615 1.57 0.00 0.00 2.15
2801 2912 9.777297 AGCACAAAAAGGAATAATAAACAATGT 57.223 25.926 0.00 0.00 0.00 2.71
2821 2932 3.266510 ACAGAGACTCAACAAGCACAA 57.733 42.857 5.02 0.00 0.00 3.33
2844 2955 7.616313 TGAAAACATTAAAAGAACAAGGGTGT 58.384 30.769 0.00 0.00 40.75 4.16
2892 3008 1.409427 CTACTCCCACAACCCTCGATC 59.591 57.143 0.00 0.00 0.00 3.69
2932 3049 5.142806 AGCCCCAATGTAAGGATAAATGT 57.857 39.130 0.00 0.00 0.00 2.71
2933 3050 6.721208 ACATAGCCCCAATGTAAGGATAAATG 59.279 38.462 0.00 0.00 35.82 2.32
2934 3051 6.863322 ACATAGCCCCAATGTAAGGATAAAT 58.137 36.000 0.00 0.00 35.82 1.40
2936 3053 5.512404 CGACATAGCCCCAATGTAAGGATAA 60.512 44.000 0.00 0.00 37.69 1.75
2937 3054 4.020573 CGACATAGCCCCAATGTAAGGATA 60.021 45.833 0.00 0.00 37.69 2.59
2939 3056 2.104111 CGACATAGCCCCAATGTAAGGA 59.896 50.000 0.00 0.00 37.69 3.36
2970 3105 9.513906 TTCAACATGACATAATGACCTCTAAAA 57.486 29.630 0.00 0.00 0.00 1.52
2989 3124 8.862325 TCAAATACTCCATAACAGTTCAACAT 57.138 30.769 0.00 0.00 0.00 2.71
3076 3211 7.796838 TCATATGTAGCGCTGAACAAAATATC 58.203 34.615 22.90 0.00 0.00 1.63
3087 3222 2.986479 TGCGTAATCATATGTAGCGCTG 59.014 45.455 22.90 2.24 43.16 5.18
3111 3246 5.404968 GTCTGTTCATATGATAGCACTGCTC 59.595 44.000 6.86 0.00 40.44 4.26
3116 3251 7.210174 TGTAAGGTCTGTTCATATGATAGCAC 58.790 38.462 6.17 2.21 0.00 4.40
3131 3266 7.144000 AGTACGTAAACTTTCTGTAAGGTCTG 58.856 38.462 0.00 0.00 38.23 3.51
3132 3267 7.282332 AGTACGTAAACTTTCTGTAAGGTCT 57.718 36.000 0.00 0.00 38.23 3.85
3158 3297 2.420687 GCTCAACTCCTCCCGATTGAAT 60.421 50.000 0.00 0.00 31.00 2.57
3165 3304 2.762535 TTTTAGCTCAACTCCTCCCG 57.237 50.000 0.00 0.00 0.00 5.14
3172 3311 3.026694 GCCCCATGATTTTAGCTCAACT 58.973 45.455 0.00 0.00 0.00 3.16
3175 3314 1.211703 TCGCCCCATGATTTTAGCTCA 59.788 47.619 0.00 0.00 0.00 4.26
3210 3351 9.628500 AGACATACACCTTTTTAGAAAAACTCT 57.372 29.630 0.00 0.00 38.28 3.24
3213 3354 9.797556 AACAGACATACACCTTTTTAGAAAAAC 57.202 29.630 0.00 0.00 34.46 2.43
3219 3360 9.796120 TTTTTGAACAGACATACACCTTTTTAG 57.204 29.630 0.00 0.00 0.00 1.85
3275 3416 7.500992 ACTCCATAATAGGTCACACACATAAG 58.499 38.462 0.00 0.00 0.00 1.73
3281 3422 4.941263 GCAAACTCCATAATAGGTCACACA 59.059 41.667 0.00 0.00 0.00 3.72
3304 3445 7.028962 CCACCACATGCAATTAATATATTCCG 58.971 38.462 0.00 0.00 0.00 4.30
3376 3517 5.882557 ACACTATCAAGGGAAAGCTAACATG 59.117 40.000 0.00 0.00 0.00 3.21
3518 3659 4.892934 AGTAAAATGGCAAGTGACAAAGGA 59.107 37.500 0.00 0.00 36.16 3.36
3520 3661 5.916883 CAGAGTAAAATGGCAAGTGACAAAG 59.083 40.000 0.00 0.00 36.16 2.77
3529 3670 6.245408 ACCAGATTACAGAGTAAAATGGCAA 58.755 36.000 16.98 0.00 0.00 4.52
3557 3698 3.485947 TTCAAAATCATGTGCGGTAGC 57.514 42.857 0.00 0.00 45.41 3.58
3558 3699 5.046910 ACTTTCAAAATCATGTGCGGTAG 57.953 39.130 0.00 0.00 0.00 3.18
3559 3700 4.517075 TGACTTTCAAAATCATGTGCGGTA 59.483 37.500 0.00 0.00 0.00 4.02
3560 3701 3.317711 TGACTTTCAAAATCATGTGCGGT 59.682 39.130 0.00 0.00 0.00 5.68
3561 3702 3.899734 TGACTTTCAAAATCATGTGCGG 58.100 40.909 0.00 0.00 0.00 5.69
3562 3703 5.155643 TCATGACTTTCAAAATCATGTGCG 58.844 37.500 18.56 0.00 46.45 5.34
3563 3704 6.809689 TCATCATGACTTTCAAAATCATGTGC 59.190 34.615 18.56 0.00 46.45 4.57
3564 3705 8.926715 ATCATCATGACTTTCAAAATCATGTG 57.073 30.769 18.56 15.66 46.45 3.21
3577 3718 9.254133 CGTTCTTCAGTAATATCATCATGACTT 57.746 33.333 0.00 0.00 0.00 3.01
3578 3719 8.417106 ACGTTCTTCAGTAATATCATCATGACT 58.583 33.333 0.00 0.00 0.00 3.41
3579 3720 8.581057 ACGTTCTTCAGTAATATCATCATGAC 57.419 34.615 0.00 0.00 0.00 3.06
3580 3721 8.633561 AGACGTTCTTCAGTAATATCATCATGA 58.366 33.333 0.00 0.00 0.00 3.07
3581 3722 8.809159 AGACGTTCTTCAGTAATATCATCATG 57.191 34.615 0.00 0.00 0.00 3.07
3582 3723 9.823647 AAAGACGTTCTTCAGTAATATCATCAT 57.176 29.630 0.00 0.00 35.27 2.45
3590 3731 9.141400 GTTCTGATAAAGACGTTCTTCAGTAAT 57.859 33.333 11.21 0.00 35.27 1.89
3591 3732 8.139350 TGTTCTGATAAAGACGTTCTTCAGTAA 58.861 33.333 11.21 5.27 35.27 2.24
3592 3733 7.654568 TGTTCTGATAAAGACGTTCTTCAGTA 58.345 34.615 11.21 3.23 35.27 2.74
3593 3734 6.513180 TGTTCTGATAAAGACGTTCTTCAGT 58.487 36.000 11.21 0.00 35.27 3.41
3594 3735 7.588143 ATGTTCTGATAAAGACGTTCTTCAG 57.412 36.000 0.00 0.00 35.27 3.02
3595 3736 7.962964 AATGTTCTGATAAAGACGTTCTTCA 57.037 32.000 0.00 0.00 35.27 3.02
3596 3737 9.665264 AAAAATGTTCTGATAAAGACGTTCTTC 57.335 29.630 0.00 0.00 35.27 2.87
3597 3738 9.450807 CAAAAATGTTCTGATAAAGACGTTCTT 57.549 29.630 0.00 0.00 38.59 2.52
3598 3739 7.591426 GCAAAAATGTTCTGATAAAGACGTTCT 59.409 33.333 0.00 0.00 33.46 3.01
3599 3740 7.591426 AGCAAAAATGTTCTGATAAAGACGTTC 59.409 33.333 0.00 0.00 33.46 3.95
3600 3741 7.425606 AGCAAAAATGTTCTGATAAAGACGTT 58.574 30.769 0.00 0.00 33.46 3.99
3601 3742 6.970484 AGCAAAAATGTTCTGATAAAGACGT 58.030 32.000 0.00 0.00 33.46 4.34
3602 3743 7.805071 AGAAGCAAAAATGTTCTGATAAAGACG 59.195 33.333 0.00 0.00 33.46 4.18
3603 3744 9.122613 GAGAAGCAAAAATGTTCTGATAAAGAC 57.877 33.333 0.00 0.00 33.46 3.01
3604 3745 8.849168 TGAGAAGCAAAAATGTTCTGATAAAGA 58.151 29.630 0.00 0.00 30.55 2.52
3605 3746 8.909671 GTGAGAAGCAAAAATGTTCTGATAAAG 58.090 33.333 0.00 0.00 30.55 1.85
3606 3747 8.632679 AGTGAGAAGCAAAAATGTTCTGATAAA 58.367 29.630 0.00 0.00 30.55 1.40
3607 3748 8.169977 AGTGAGAAGCAAAAATGTTCTGATAA 57.830 30.769 0.00 0.00 30.55 1.75
3608 3749 7.750229 AGTGAGAAGCAAAAATGTTCTGATA 57.250 32.000 0.00 0.00 30.55 2.15
3609 3750 6.645790 AGTGAGAAGCAAAAATGTTCTGAT 57.354 33.333 0.00 0.00 30.55 2.90
3610 3751 6.455360 AAGTGAGAAGCAAAAATGTTCTGA 57.545 33.333 0.00 0.00 30.55 3.27
3611 3752 6.019318 CCAAAGTGAGAAGCAAAAATGTTCTG 60.019 38.462 0.00 0.00 30.55 3.02
3612 3753 6.044682 CCAAAGTGAGAAGCAAAAATGTTCT 58.955 36.000 0.00 0.00 33.14 3.01
3613 3754 5.234972 CCCAAAGTGAGAAGCAAAAATGTTC 59.765 40.000 0.00 0.00 0.00 3.18
3614 3755 5.118286 CCCAAAGTGAGAAGCAAAAATGTT 58.882 37.500 0.00 0.00 0.00 2.71
3615 3756 4.696455 CCCAAAGTGAGAAGCAAAAATGT 58.304 39.130 0.00 0.00 0.00 2.71
3616 3757 3.495753 GCCCAAAGTGAGAAGCAAAAATG 59.504 43.478 0.00 0.00 0.00 2.32
3617 3758 3.134442 TGCCCAAAGTGAGAAGCAAAAAT 59.866 39.130 0.00 0.00 0.00 1.82
3618 3759 2.499289 TGCCCAAAGTGAGAAGCAAAAA 59.501 40.909 0.00 0.00 0.00 1.94
3619 3760 2.106566 TGCCCAAAGTGAGAAGCAAAA 58.893 42.857 0.00 0.00 0.00 2.44
3620 3761 1.774110 TGCCCAAAGTGAGAAGCAAA 58.226 45.000 0.00 0.00 0.00 3.68
3621 3762 1.774110 TTGCCCAAAGTGAGAAGCAA 58.226 45.000 0.00 0.00 37.85 3.91
3622 3763 1.999648 ATTGCCCAAAGTGAGAAGCA 58.000 45.000 0.00 0.00 0.00 3.91
3623 3764 3.674410 GCTAATTGCCCAAAGTGAGAAGC 60.674 47.826 0.00 0.00 35.15 3.86
3624 3765 3.507233 TGCTAATTGCCCAAAGTGAGAAG 59.493 43.478 0.00 0.00 42.00 2.85
3625 3766 3.495331 TGCTAATTGCCCAAAGTGAGAA 58.505 40.909 0.00 0.00 42.00 2.87
3626 3767 3.153369 TGCTAATTGCCCAAAGTGAGA 57.847 42.857 0.00 0.00 42.00 3.27
3627 3768 3.940209 TTGCTAATTGCCCAAAGTGAG 57.060 42.857 0.00 0.00 42.00 3.51
3628 3769 5.991933 TTATTGCTAATTGCCCAAAGTGA 57.008 34.783 0.00 0.00 42.00 3.41
3629 3770 6.576185 AGATTATTGCTAATTGCCCAAAGTG 58.424 36.000 0.00 0.00 42.00 3.16
3630 3771 6.796785 AGATTATTGCTAATTGCCCAAAGT 57.203 33.333 0.00 0.00 42.00 2.66
3631 3772 7.983484 AGAAAGATTATTGCTAATTGCCCAAAG 59.017 33.333 0.00 0.00 42.00 2.77
3632 3773 7.850193 AGAAAGATTATTGCTAATTGCCCAAA 58.150 30.769 0.00 0.00 42.00 3.28
3633 3774 7.422465 AGAAAGATTATTGCTAATTGCCCAA 57.578 32.000 0.00 0.00 42.00 4.12
3634 3775 8.579006 CATAGAAAGATTATTGCTAATTGCCCA 58.421 33.333 0.00 0.00 42.00 5.36
3635 3776 8.031277 CCATAGAAAGATTATTGCTAATTGCCC 58.969 37.037 0.00 0.00 42.00 5.36
3636 3777 8.796475 TCCATAGAAAGATTATTGCTAATTGCC 58.204 33.333 0.00 0.00 42.00 4.52
3637 3778 9.617975 GTCCATAGAAAGATTATTGCTAATTGC 57.382 33.333 0.00 0.00 43.25 3.56
3638 3779 9.817365 CGTCCATAGAAAGATTATTGCTAATTG 57.183 33.333 0.00 0.00 0.00 2.32
3639 3780 9.561069 ACGTCCATAGAAAGATTATTGCTAATT 57.439 29.630 0.00 0.00 0.00 1.40
3640 3781 9.209175 GACGTCCATAGAAAGATTATTGCTAAT 57.791 33.333 3.51 0.00 0.00 1.73
3641 3782 7.656137 GGACGTCCATAGAAAGATTATTGCTAA 59.344 37.037 29.75 0.00 35.64 3.09
3642 3783 7.152645 GGACGTCCATAGAAAGATTATTGCTA 58.847 38.462 29.75 0.00 35.64 3.49
3643 3784 5.992217 GGACGTCCATAGAAAGATTATTGCT 59.008 40.000 29.75 0.00 35.64 3.91
3644 3785 5.107453 CGGACGTCCATAGAAAGATTATTGC 60.107 44.000 32.80 0.63 35.14 3.56
3645 3786 5.405571 CCGGACGTCCATAGAAAGATTATTG 59.594 44.000 32.80 11.24 35.14 1.90
3646 3787 5.303589 TCCGGACGTCCATAGAAAGATTATT 59.696 40.000 32.80 0.00 35.14 1.40
3647 3788 4.831155 TCCGGACGTCCATAGAAAGATTAT 59.169 41.667 32.80 0.00 35.14 1.28
3648 3789 4.209538 TCCGGACGTCCATAGAAAGATTA 58.790 43.478 32.80 1.84 35.14 1.75
3649 3790 3.028850 TCCGGACGTCCATAGAAAGATT 58.971 45.455 32.80 0.00 35.14 2.40
3650 3791 2.662866 TCCGGACGTCCATAGAAAGAT 58.337 47.619 32.80 0.00 35.14 2.40
3651 3792 2.133281 TCCGGACGTCCATAGAAAGA 57.867 50.000 32.80 14.47 35.14 2.52
3652 3793 2.953466 TTCCGGACGTCCATAGAAAG 57.047 50.000 32.80 15.18 35.14 2.62
3653 3794 3.449737 AGATTTCCGGACGTCCATAGAAA 59.550 43.478 30.78 30.78 35.24 2.52
3654 3795 3.028850 AGATTTCCGGACGTCCATAGAA 58.971 45.455 32.80 26.46 35.14 2.10
3655 3796 2.662866 AGATTTCCGGACGTCCATAGA 58.337 47.619 32.80 22.62 35.14 1.98


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.