Multiple sequence alignment - TraesCS5D01G467000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G467000 chr5D 100.000 6053 0 0 1 6053 509226193 509232245 0.000000e+00 11178.0
1 TraesCS5D01G467000 chr5D 98.387 186 3 0 2216 2401 509228225 509228410 1.630000e-85 327.0
2 TraesCS5D01G467000 chr5D 98.387 186 3 0 2033 2218 509228408 509228593 1.630000e-85 327.0
3 TraesCS5D01G467000 chr5A 93.977 3437 162 35 2625 6050 636425439 636428841 0.000000e+00 5158.0
4 TraesCS5D01G467000 chr5A 88.303 1308 77 35 671 1929 636423778 636425058 0.000000e+00 1498.0
5 TraesCS5D01G467000 chr5A 93.379 589 31 5 5448 6029 129232231 129231644 0.000000e+00 865.0
6 TraesCS5D01G467000 chr5A 92.010 388 21 7 2215 2594 636425056 636425441 2.480000e-148 536.0
7 TraesCS5D01G467000 chr5A 98.387 186 3 0 2033 2218 636425057 636425242 1.630000e-85 327.0
8 TraesCS5D01G467000 chr5A 89.349 169 15 3 4043 4209 10476865 10477032 6.150000e-50 209.0
9 TraesCS5D01G467000 chr5B 93.621 2273 108 22 2215 4475 639734835 639737082 0.000000e+00 3360.0
10 TraesCS5D01G467000 chr5B 92.450 1404 89 12 4492 5887 639737067 639738461 0.000000e+00 1989.0
11 TraesCS5D01G467000 chr5B 88.889 1107 54 31 847 1929 639733776 639734837 0.000000e+00 1299.0
12 TraesCS5D01G467000 chr5B 95.187 187 6 2 2033 2218 639734836 639735020 5.930000e-75 292.0
13 TraesCS5D01G467000 chr5B 94.286 175 9 1 5871 6044 639738485 639738659 3.600000e-67 267.0
14 TraesCS5D01G467000 chr5B 80.693 202 12 7 671 856 639733378 639733568 1.370000e-26 132.0
15 TraesCS5D01G467000 chr5B 83.636 110 16 2 1926 2034 685568194 685568302 1.070000e-17 102.0
16 TraesCS5D01G467000 chr6D 96.471 680 14 6 1 672 467949390 467948713 0.000000e+00 1114.0
17 TraesCS5D01G467000 chr6D 95.671 231 9 1 443 672 428457789 428458019 2.660000e-98 370.0
18 TraesCS5D01G467000 chr6D 84.795 171 21 4 416 583 49267856 49268024 3.750000e-37 167.0
19 TraesCS5D01G467000 chr6D 93.023 86 4 2 1951 2034 451764425 451764510 2.290000e-24 124.0
20 TraesCS5D01G467000 chr1A 92.821 599 34 6 5448 6038 505307264 505307861 0.000000e+00 859.0
21 TraesCS5D01G467000 chr2D 92.809 598 34 6 5448 6038 287143861 287144456 0.000000e+00 857.0
22 TraesCS5D01G467000 chr2D 92.398 171 11 2 4043 4212 147232647 147232816 6.060000e-60 243.0
23 TraesCS5D01G467000 chr2D 86.550 171 21 2 4043 4212 354966789 354966958 2.880000e-43 187.0
24 TraesCS5D01G467000 chr2D 89.189 148 14 2 4044 4190 78690948 78690802 3.730000e-42 183.0
25 TraesCS5D01G467000 chr2D 81.690 213 34 5 443 652 585068104 585067894 8.070000e-39 172.0
26 TraesCS5D01G467000 chr3D 92.397 605 33 9 5448 6042 470482599 470483200 0.000000e+00 850.0
27 TraesCS5D01G467000 chr3D 85.217 345 43 4 2 339 276669999 276669656 1.250000e-91 348.0
28 TraesCS5D01G467000 chr3D 94.495 109 5 1 1927 2034 552962287 552962395 3.750000e-37 167.0
29 TraesCS5D01G467000 chr3D 100.000 28 0 0 1762 1789 591879042 591879069 1.100000e-02 52.8
30 TraesCS5D01G467000 chr1B 89.194 620 34 11 2 598 68949088 68949697 0.000000e+00 743.0
31 TraesCS5D01G467000 chr1B 90.643 171 14 2 4043 4212 363632628 363632797 6.100000e-55 226.0
32 TraesCS5D01G467000 chr2B 93.124 509 22 5 1 499 46839262 46839767 0.000000e+00 734.0
33 TraesCS5D01G467000 chr2B 90.643 171 14 2 4043 4212 206754374 206754543 6.100000e-55 226.0
34 TraesCS5D01G467000 chr3B 88.380 611 53 12 1 598 789838927 789839532 0.000000e+00 719.0
35 TraesCS5D01G467000 chr3B 88.721 594 52 11 3 584 789840487 789841077 0.000000e+00 712.0
36 TraesCS5D01G467000 chr3B 84.638 345 45 6 2 339 8885239 8884896 2.700000e-88 337.0
37 TraesCS5D01G467000 chr7D 97.354 378 9 1 1 378 364115552 364115176 5.110000e-180 641.0
38 TraesCS5D01G467000 chr7D 96.259 294 11 0 379 672 364110499 364110206 3.280000e-132 483.0
39 TraesCS5D01G467000 chr7D 90.984 122 9 2 1920 2039 65601774 65601653 4.850000e-36 163.0
40 TraesCS5D01G467000 chr2A 90.230 174 13 2 4043 4212 155591081 155590908 2.200000e-54 224.0
41 TraesCS5D01G467000 chr2A 94.366 71 2 2 573 642 607511451 607511520 2.310000e-19 108.0
42 TraesCS5D01G467000 chr4A 82.553 235 30 8 114 339 711904218 711904450 4.790000e-46 196.0
43 TraesCS5D01G467000 chr4A 91.262 103 8 1 1933 2034 560903464 560903362 8.180000e-29 139.0
44 TraesCS5D01G467000 chr1D 81.221 213 35 5 443 652 443750792 443750582 3.750000e-37 167.0
45 TraesCS5D01G467000 chr1D 79.279 111 19 4 1925 2034 425293886 425293993 2.340000e-09 75.0
46 TraesCS5D01G467000 chr4D 88.785 107 11 1 1928 2033 100563732 100563838 4.920000e-26 130.0
47 TraesCS5D01G467000 chr4D 81.731 104 16 2 1934 2034 125097478 125097375 3.890000e-12 84.2
48 TraesCS5D01G467000 chr7A 78.417 139 22 7 543 677 686275873 686275739 3.890000e-12 84.2
49 TraesCS5D01G467000 chr7B 100.000 37 0 0 2001 2037 369814987 369814951 1.090000e-07 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G467000 chr5D 509226193 509232245 6052 False 11178.000000 11178 100.000000 1 6053 1 chr5D.!!$F1 6052
1 TraesCS5D01G467000 chr5A 636423778 636428841 5063 False 1879.750000 5158 93.169250 671 6050 4 chr5A.!!$F2 5379
2 TraesCS5D01G467000 chr5A 129231644 129232231 587 True 865.000000 865 93.379000 5448 6029 1 chr5A.!!$R1 581
3 TraesCS5D01G467000 chr5B 639733378 639738659 5281 False 1223.166667 3360 90.854333 671 6044 6 chr5B.!!$F2 5373
4 TraesCS5D01G467000 chr6D 467948713 467949390 677 True 1114.000000 1114 96.471000 1 672 1 chr6D.!!$R1 671
5 TraesCS5D01G467000 chr1A 505307264 505307861 597 False 859.000000 859 92.821000 5448 6038 1 chr1A.!!$F1 590
6 TraesCS5D01G467000 chr2D 287143861 287144456 595 False 857.000000 857 92.809000 5448 6038 1 chr2D.!!$F2 590
7 TraesCS5D01G467000 chr3D 470482599 470483200 601 False 850.000000 850 92.397000 5448 6042 1 chr3D.!!$F1 594
8 TraesCS5D01G467000 chr1B 68949088 68949697 609 False 743.000000 743 89.194000 2 598 1 chr1B.!!$F1 596
9 TraesCS5D01G467000 chr2B 46839262 46839767 505 False 734.000000 734 93.124000 1 499 1 chr2B.!!$F1 498
10 TraesCS5D01G467000 chr3B 789838927 789841077 2150 False 715.500000 719 88.550500 1 598 2 chr3B.!!$F1 597

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
784 2373 0.107654 ACTAAAGTGGATGAGCGGGC 60.108 55.000 0.0 0.0 0.00 6.13 F
1528 3359 0.106521 AGCAACAAAACATGGGTGGC 59.893 50.000 0.0 0.0 0.00 5.01 F
1709 3541 0.390124 TTATTAGTGCCCTACCCGCG 59.610 55.000 0.0 0.0 0.00 6.46 F
2556 4416 1.885388 CACCACAAACCGTCAGCGA 60.885 57.895 0.0 0.0 41.33 4.93 F
4104 5977 0.830444 TTGCTACTCGGTGGGTCACT 60.830 55.000 0.0 0.0 34.40 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2524 4384 1.004628 TGTGGTGTTGGAGATGATGGG 59.995 52.381 0.0 0.0 0.00 4.00 R
2539 4399 1.070786 ATCGCTGACGGTTTGTGGT 59.929 52.632 0.0 0.0 40.63 4.16 R
3644 5505 2.093500 GGATGTATCACTCAGGCACACA 60.093 50.000 0.0 0.0 0.00 3.72 R
4297 6170 0.250684 CCACCATGCCACACACAGTA 60.251 55.000 0.0 0.0 0.00 2.74 R
5544 7424 0.251608 TGACCCGAGACAGTGATGGA 60.252 55.000 0.0 0.0 0.00 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 2.876368 GATCCGTGCTCACCTTGGGG 62.876 65.000 0.00 0.00 38.88 4.96
457 2041 2.797491 GGAGAAATTCCGAAAATGCCG 58.203 47.619 0.00 0.00 35.91 5.69
611 2196 0.110823 ATCAAGCGAACGCAACGAAC 60.111 50.000 20.66 0.00 44.88 3.95
633 2218 1.309950 CCGGATTCGTCTGAGCTCTA 58.690 55.000 16.19 0.00 33.95 2.43
666 2251 4.765856 GGGAGCTCCGTAGATACTTATTCA 59.234 45.833 26.36 0.00 36.71 2.57
685 2270 0.400975 ATGGATGCTCTGAGATGCCC 59.599 55.000 9.28 4.09 0.00 5.36
702 2290 3.214696 GCCCAATGCACTAATAGGAGT 57.785 47.619 0.00 0.00 40.77 3.85
703 2291 4.351874 GCCCAATGCACTAATAGGAGTA 57.648 45.455 0.00 0.00 40.77 2.59
704 2292 4.911390 GCCCAATGCACTAATAGGAGTAT 58.089 43.478 0.00 0.00 40.77 2.12
705 2293 6.049955 GCCCAATGCACTAATAGGAGTATA 57.950 41.667 0.00 0.00 40.77 1.47
769 2358 8.455682 AGTCAAACAAAAATCACGAGAAACTAA 58.544 29.630 0.00 0.00 0.00 2.24
781 2370 3.304559 CGAGAAACTAAAGTGGATGAGCG 59.695 47.826 0.00 0.00 0.00 5.03
782 2371 3.600388 AGAAACTAAAGTGGATGAGCGG 58.400 45.455 0.00 0.00 0.00 5.52
784 2373 0.107654 ACTAAAGTGGATGAGCGGGC 60.108 55.000 0.00 0.00 0.00 6.13
785 2374 0.815615 CTAAAGTGGATGAGCGGGCC 60.816 60.000 0.00 0.00 0.00 5.80
916 2737 2.544685 CTCGTGGCAAATCTGGTCTAG 58.455 52.381 0.00 0.00 0.00 2.43
927 2748 4.208686 GGTCTAGCAGTCGCCCCG 62.209 72.222 0.00 0.00 39.83 5.73
1134 2955 3.943034 CTCGACGCGCTCGGATCT 61.943 66.667 23.71 0.00 43.16 2.75
1193 3014 3.141488 CGAGGTAGCCTGCCGTCT 61.141 66.667 0.00 0.00 31.76 4.18
1309 3135 2.491022 GCGCCGTATCCTCCTCACT 61.491 63.158 0.00 0.00 0.00 3.41
1310 3136 1.655329 CGCCGTATCCTCCTCACTC 59.345 63.158 0.00 0.00 0.00 3.51
1336 3162 0.249238 TGTTTTGGTCACAATGCGGC 60.249 50.000 0.00 0.00 36.29 6.53
1344 3170 3.121030 ACAATGCGGCTGTCGAGC 61.121 61.111 5.55 0.00 45.40 5.03
1519 3350 5.466819 GGTAATTACCAGGAGCAACAAAAC 58.533 41.667 26.65 0.00 45.73 2.43
1520 3351 5.010213 GGTAATTACCAGGAGCAACAAAACA 59.990 40.000 26.65 0.00 45.73 2.83
1521 3352 5.806654 AATTACCAGGAGCAACAAAACAT 57.193 34.783 0.00 0.00 0.00 2.71
1522 3353 4.582701 TTACCAGGAGCAACAAAACATG 57.417 40.909 0.00 0.00 0.00 3.21
1523 3354 1.688197 ACCAGGAGCAACAAAACATGG 59.312 47.619 0.00 0.00 39.59 3.66
1524 3355 1.001181 CCAGGAGCAACAAAACATGGG 59.999 52.381 0.00 0.00 31.78 4.00
1528 3359 0.106521 AGCAACAAAACATGGGTGGC 59.893 50.000 0.00 0.00 0.00 5.01
1562 3393 1.488527 GAGAATAATCGAGGCGCGTT 58.511 50.000 11.06 7.07 41.80 4.84
1613 3445 2.373540 TCCGTATGTTAACGCAAGCT 57.626 45.000 0.26 0.00 41.51 3.74
1693 3525 9.247861 GGGAGGAAACATAATTAGCATCATTAT 57.752 33.333 0.00 0.00 0.00 1.28
1706 3538 4.010349 GCATCATTATTAGTGCCCTACCC 58.990 47.826 0.00 0.00 0.00 3.69
1709 3541 0.390124 TTATTAGTGCCCTACCCGCG 59.610 55.000 0.00 0.00 0.00 6.46
1783 3635 7.191593 ACATTTTATTAGTTACTCCCTCCGT 57.808 36.000 0.00 0.00 0.00 4.69
1786 3638 9.603921 CATTTTATTAGTTACTCCCTCCGTAAA 57.396 33.333 0.00 0.00 0.00 2.01
1799 3651 3.881089 CCTCCGTAAACTTGTCTTGGTTT 59.119 43.478 0.00 0.00 38.82 3.27
1806 3658 6.970043 CGTAAACTTGTCTTGGTTTGAATTCA 59.030 34.615 3.38 3.38 37.01 2.57
1877 3729 4.227197 AGCATCATTACTAGTGCCCTACT 58.773 43.478 5.39 0.00 43.56 2.57
1908 3760 4.202010 CGCTGTGGGAAATATTTTGGGTAG 60.202 45.833 1.43 1.10 0.00 3.18
1938 3790 9.362151 TGGTTTTCAAATTTATACTTCCTCTGT 57.638 29.630 0.00 0.00 0.00 3.41
1943 3795 9.793259 TTCAAATTTATACTTCCTCTGTTCACT 57.207 29.630 0.00 0.00 0.00 3.41
1944 3796 9.793259 TCAAATTTATACTTCCTCTGTTCACTT 57.207 29.630 0.00 0.00 0.00 3.16
1951 3803 6.927294 ACTTCCTCTGTTCACTTTTACAAG 57.073 37.500 0.00 0.00 35.92 3.16
1952 3804 6.650120 ACTTCCTCTGTTCACTTTTACAAGA 58.350 36.000 0.00 0.00 33.72 3.02
1953 3805 7.283329 ACTTCCTCTGTTCACTTTTACAAGAT 58.717 34.615 0.00 0.00 33.72 2.40
1954 3806 7.227512 ACTTCCTCTGTTCACTTTTACAAGATG 59.772 37.037 0.00 0.00 33.72 2.90
1955 3807 6.591935 TCCTCTGTTCACTTTTACAAGATGT 58.408 36.000 0.00 0.00 33.72 3.06
1956 3808 7.054124 TCCTCTGTTCACTTTTACAAGATGTT 58.946 34.615 0.00 0.00 33.72 2.71
1957 3809 7.556275 TCCTCTGTTCACTTTTACAAGATGTTT 59.444 33.333 0.00 0.00 33.72 2.83
1958 3810 8.190784 CCTCTGTTCACTTTTACAAGATGTTTT 58.809 33.333 0.00 0.00 33.72 2.43
1973 3825 9.429359 ACAAGATGTTTTAGATAGTTCAGACAG 57.571 33.333 0.00 0.00 0.00 3.51
1974 3826 8.386606 CAAGATGTTTTAGATAGTTCAGACAGC 58.613 37.037 0.00 0.00 0.00 4.40
1975 3827 7.846066 AGATGTTTTAGATAGTTCAGACAGCT 58.154 34.615 0.00 0.00 0.00 4.24
1976 3828 7.978975 AGATGTTTTAGATAGTTCAGACAGCTC 59.021 37.037 0.00 0.00 27.49 4.09
1977 3829 6.398918 TGTTTTAGATAGTTCAGACAGCTCC 58.601 40.000 0.00 0.00 0.00 4.70
1978 3830 5.599999 TTTAGATAGTTCAGACAGCTCCC 57.400 43.478 0.00 0.00 0.00 4.30
1979 3831 3.107402 AGATAGTTCAGACAGCTCCCA 57.893 47.619 0.00 0.00 0.00 4.37
1980 3832 3.445008 AGATAGTTCAGACAGCTCCCAA 58.555 45.455 0.00 0.00 0.00 4.12
1981 3833 3.840666 AGATAGTTCAGACAGCTCCCAAA 59.159 43.478 0.00 0.00 0.00 3.28
1982 3834 4.287067 AGATAGTTCAGACAGCTCCCAAAA 59.713 41.667 0.00 0.00 0.00 2.44
1983 3835 3.515602 AGTTCAGACAGCTCCCAAAAT 57.484 42.857 0.00 0.00 0.00 1.82
1984 3836 4.640771 AGTTCAGACAGCTCCCAAAATA 57.359 40.909 0.00 0.00 0.00 1.40
1985 3837 4.583871 AGTTCAGACAGCTCCCAAAATAG 58.416 43.478 0.00 0.00 0.00 1.73
1986 3838 4.042187 AGTTCAGACAGCTCCCAAAATAGT 59.958 41.667 0.00 0.00 0.00 2.12
1987 3839 4.640771 TCAGACAGCTCCCAAAATAGTT 57.359 40.909 0.00 0.00 0.00 2.24
1988 3840 4.579869 TCAGACAGCTCCCAAAATAGTTC 58.420 43.478 0.00 0.00 0.00 3.01
1989 3841 4.041567 TCAGACAGCTCCCAAAATAGTTCA 59.958 41.667 0.00 0.00 0.00 3.18
1990 3842 4.761739 CAGACAGCTCCCAAAATAGTTCAA 59.238 41.667 0.00 0.00 0.00 2.69
1991 3843 5.241506 CAGACAGCTCCCAAAATAGTTCAAA 59.758 40.000 0.00 0.00 0.00 2.69
1992 3844 6.012745 AGACAGCTCCCAAAATAGTTCAAAT 58.987 36.000 0.00 0.00 0.00 2.32
1993 3845 6.151817 AGACAGCTCCCAAAATAGTTCAAATC 59.848 38.462 0.00 0.00 0.00 2.17
1994 3846 5.774690 ACAGCTCCCAAAATAGTTCAAATCA 59.225 36.000 0.00 0.00 0.00 2.57
1995 3847 6.071728 ACAGCTCCCAAAATAGTTCAAATCAG 60.072 38.462 0.00 0.00 0.00 2.90
1996 3848 5.105063 GCTCCCAAAATAGTTCAAATCAGC 58.895 41.667 0.00 0.00 0.00 4.26
1997 3849 5.105595 GCTCCCAAAATAGTTCAAATCAGCT 60.106 40.000 0.00 0.00 0.00 4.24
1998 3850 6.271488 TCCCAAAATAGTTCAAATCAGCTG 57.729 37.500 7.63 7.63 0.00 4.24
1999 3851 5.774690 TCCCAAAATAGTTCAAATCAGCTGT 59.225 36.000 14.67 0.00 0.00 4.40
2000 3852 6.071952 TCCCAAAATAGTTCAAATCAGCTGTC 60.072 38.462 14.67 0.00 0.00 3.51
2001 3853 6.071728 CCCAAAATAGTTCAAATCAGCTGTCT 60.072 38.462 14.67 0.00 0.00 3.41
2002 3854 7.121168 CCCAAAATAGTTCAAATCAGCTGTCTA 59.879 37.037 14.67 6.83 0.00 2.59
2003 3855 8.514594 CCAAAATAGTTCAAATCAGCTGTCTAA 58.485 33.333 14.67 0.00 0.00 2.10
2004 3856 9.897744 CAAAATAGTTCAAATCAGCTGTCTAAA 57.102 29.630 14.67 0.00 0.00 1.85
2006 3858 9.899226 AAATAGTTCAAATCAGCTGTCTAAAAC 57.101 29.630 14.67 13.45 0.00 2.43
2007 3859 5.990408 AGTTCAAATCAGCTGTCTAAAACG 58.010 37.500 14.67 0.00 0.00 3.60
2008 3860 5.527582 AGTTCAAATCAGCTGTCTAAAACGT 59.472 36.000 14.67 0.00 0.00 3.99
2009 3861 5.591643 TCAAATCAGCTGTCTAAAACGTC 57.408 39.130 14.67 0.00 0.00 4.34
2010 3862 5.297547 TCAAATCAGCTGTCTAAAACGTCT 58.702 37.500 14.67 0.00 0.00 4.18
2011 3863 5.758296 TCAAATCAGCTGTCTAAAACGTCTT 59.242 36.000 14.67 0.00 0.00 3.01
2012 3864 6.926826 TCAAATCAGCTGTCTAAAACGTCTTA 59.073 34.615 14.67 0.00 0.00 2.10
2013 3865 7.602644 TCAAATCAGCTGTCTAAAACGTCTTAT 59.397 33.333 14.67 0.00 0.00 1.73
2014 3866 8.869897 CAAATCAGCTGTCTAAAACGTCTTATA 58.130 33.333 14.67 0.00 0.00 0.98
2015 3867 8.997621 AATCAGCTGTCTAAAACGTCTTATAA 57.002 30.769 14.67 0.00 0.00 0.98
2016 3868 8.997621 ATCAGCTGTCTAAAACGTCTTATAAA 57.002 30.769 14.67 0.00 0.00 1.40
2017 3869 8.821147 TCAGCTGTCTAAAACGTCTTATAAAA 57.179 30.769 14.67 0.00 0.00 1.52
2018 3870 9.263538 TCAGCTGTCTAAAACGTCTTATAAAAA 57.736 29.630 14.67 0.00 0.00 1.94
2019 3871 9.530129 CAGCTGTCTAAAACGTCTTATAAAAAG 57.470 33.333 5.25 0.00 0.00 2.27
2020 3872 8.718734 AGCTGTCTAAAACGTCTTATAAAAAGG 58.281 33.333 0.00 0.00 0.00 3.11
2021 3873 8.715088 GCTGTCTAAAACGTCTTATAAAAAGGA 58.285 33.333 0.00 0.00 0.00 3.36
2024 3876 9.521179 GTCTAAAACGTCTTATAAAAAGGAACG 57.479 33.333 0.00 0.00 0.00 3.95
2025 3877 8.711457 TCTAAAACGTCTTATAAAAAGGAACGG 58.289 33.333 0.00 0.00 0.00 4.44
2026 3878 7.495135 AAAACGTCTTATAAAAAGGAACGGA 57.505 32.000 0.00 0.00 0.00 4.69
2027 3879 6.716898 AACGTCTTATAAAAAGGAACGGAG 57.283 37.500 0.00 0.00 0.00 4.63
2028 3880 5.173664 ACGTCTTATAAAAAGGAACGGAGG 58.826 41.667 0.00 0.00 0.00 4.30
2029 3881 4.569564 CGTCTTATAAAAAGGAACGGAGGG 59.430 45.833 0.00 0.00 0.00 4.30
2030 3882 5.625197 CGTCTTATAAAAAGGAACGGAGGGA 60.625 44.000 0.00 0.00 0.00 4.20
2031 3883 5.816258 GTCTTATAAAAAGGAACGGAGGGAG 59.184 44.000 0.00 0.00 0.00 4.30
2032 3884 5.486419 TCTTATAAAAAGGAACGGAGGGAGT 59.514 40.000 0.00 0.00 0.00 3.85
2033 3885 6.669154 TCTTATAAAAAGGAACGGAGGGAGTA 59.331 38.462 0.00 0.00 0.00 2.59
2082 3934 9.555727 TTAGTTGTAACTTTGAGCATAAGTTCT 57.444 29.630 12.29 7.76 40.37 3.01
2195 4047 8.450578 TCACTTGAACATATATTTAAGCCTGG 57.549 34.615 0.00 0.00 30.33 4.45
2196 4048 8.271458 TCACTTGAACATATATTTAAGCCTGGA 58.729 33.333 0.00 0.00 30.33 3.86
2197 4049 8.902806 CACTTGAACATATATTTAAGCCTGGAA 58.097 33.333 0.00 0.00 30.33 3.53
2198 4050 9.474313 ACTTGAACATATATTTAAGCCTGGAAA 57.526 29.630 0.00 0.00 30.33 3.13
2201 4053 9.474313 TGAACATATATTTAAGCCTGGAAAACT 57.526 29.630 0.00 0.00 0.00 2.66
2214 4066 8.700439 AGCCTGGAAAACTTTACTTTATTACA 57.300 30.769 0.00 0.00 0.00 2.41
2215 4067 9.309224 AGCCTGGAAAACTTTACTTTATTACAT 57.691 29.630 0.00 0.00 0.00 2.29
2265 4117 9.555727 TTAGTTGTAACTTTGAGCATAAGTTCT 57.444 29.630 12.29 7.76 40.37 3.01
2266 4118 7.865707 AGTTGTAACTTTGAGCATAAGTTCTG 58.134 34.615 12.29 0.00 35.21 3.02
2267 4119 7.499232 AGTTGTAACTTTGAGCATAAGTTCTGT 59.501 33.333 12.29 0.00 35.21 3.41
2268 4120 7.189693 TGTAACTTTGAGCATAAGTTCTGTG 57.810 36.000 12.29 0.00 0.00 3.66
2269 4121 6.765989 TGTAACTTTGAGCATAAGTTCTGTGT 59.234 34.615 12.29 0.00 0.00 3.72
2270 4122 7.929245 TGTAACTTTGAGCATAAGTTCTGTGTA 59.071 33.333 12.29 0.00 0.00 2.90
2271 4123 7.801716 AACTTTGAGCATAAGTTCTGTGTAA 57.198 32.000 5.38 0.00 0.00 2.41
2272 4124 7.986085 ACTTTGAGCATAAGTTCTGTGTAAT 57.014 32.000 0.00 0.00 0.00 1.89
2273 4125 8.396272 ACTTTGAGCATAAGTTCTGTGTAATT 57.604 30.769 0.00 0.00 0.00 1.40
2274 4126 8.850156 ACTTTGAGCATAAGTTCTGTGTAATTT 58.150 29.630 0.00 0.00 0.00 1.82
2275 4127 9.334693 CTTTGAGCATAAGTTCTGTGTAATTTC 57.665 33.333 0.00 0.00 0.00 2.17
2276 4128 7.977789 TGAGCATAAGTTCTGTGTAATTTCA 57.022 32.000 0.00 0.00 0.00 2.69
2277 4129 8.565896 TGAGCATAAGTTCTGTGTAATTTCAT 57.434 30.769 0.00 0.00 0.00 2.57
2278 4130 8.668353 TGAGCATAAGTTCTGTGTAATTTCATC 58.332 33.333 0.00 0.00 0.00 2.92
2279 4131 7.688372 AGCATAAGTTCTGTGTAATTTCATCG 58.312 34.615 0.00 0.00 0.00 3.84
2280 4132 7.549134 AGCATAAGTTCTGTGTAATTTCATCGA 59.451 33.333 0.00 0.00 0.00 3.59
2281 4133 8.175069 GCATAAGTTCTGTGTAATTTCATCGAA 58.825 33.333 0.00 0.00 0.00 3.71
2284 4136 7.730364 AGTTCTGTGTAATTTCATCGAAAGT 57.270 32.000 0.00 0.00 34.92 2.66
2285 4137 8.827177 AGTTCTGTGTAATTTCATCGAAAGTA 57.173 30.769 0.00 0.00 34.92 2.24
2286 4138 9.436957 AGTTCTGTGTAATTTCATCGAAAGTAT 57.563 29.630 0.00 0.00 35.22 2.12
2296 4148 7.915293 TTTCATCGAAAGTATTATGTGTGGT 57.085 32.000 0.00 0.00 0.00 4.16
2297 4149 9.607988 ATTTCATCGAAAGTATTATGTGTGGTA 57.392 29.630 0.00 0.00 34.92 3.25
2298 4150 7.997107 TCATCGAAAGTATTATGTGTGGTAC 57.003 36.000 0.00 0.00 0.00 3.34
2299 4151 6.982141 TCATCGAAAGTATTATGTGTGGTACC 59.018 38.462 4.43 4.43 0.00 3.34
2300 4152 6.283544 TCGAAAGTATTATGTGTGGTACCA 57.716 37.500 11.60 11.60 0.00 3.25
2301 4153 6.699366 TCGAAAGTATTATGTGTGGTACCAA 58.301 36.000 18.31 0.60 0.00 3.67
2302 4154 6.814644 TCGAAAGTATTATGTGTGGTACCAAG 59.185 38.462 18.31 0.00 0.00 3.61
2303 4155 6.036735 CGAAAGTATTATGTGTGGTACCAAGG 59.963 42.308 18.31 0.00 0.00 3.61
2304 4156 6.630203 AAGTATTATGTGTGGTACCAAGGA 57.370 37.500 18.31 3.04 0.00 3.36
2305 4157 6.235231 AGTATTATGTGTGGTACCAAGGAG 57.765 41.667 18.31 0.00 0.00 3.69
2306 4158 5.724854 AGTATTATGTGTGGTACCAAGGAGT 59.275 40.000 18.31 4.76 0.00 3.85
2307 4159 6.899075 AGTATTATGTGTGGTACCAAGGAGTA 59.101 38.462 18.31 3.74 0.00 2.59
2308 4160 6.824958 ATTATGTGTGGTACCAAGGAGTAT 57.175 37.500 18.31 8.18 0.00 2.12
2309 4161 3.973206 TGTGTGGTACCAAGGAGTATG 57.027 47.619 18.31 0.00 0.00 2.39
2310 4162 3.244582 TGTGTGGTACCAAGGAGTATGT 58.755 45.455 18.31 0.00 0.00 2.29
2311 4163 4.418359 TGTGTGGTACCAAGGAGTATGTA 58.582 43.478 18.31 0.00 0.00 2.29
2312 4164 4.839550 TGTGTGGTACCAAGGAGTATGTAA 59.160 41.667 18.31 0.00 0.00 2.41
2313 4165 5.307456 TGTGTGGTACCAAGGAGTATGTAAA 59.693 40.000 18.31 0.00 0.00 2.01
2314 4166 6.013206 TGTGTGGTACCAAGGAGTATGTAAAT 60.013 38.462 18.31 0.00 0.00 1.40
2315 4167 7.180587 TGTGTGGTACCAAGGAGTATGTAAATA 59.819 37.037 18.31 0.00 0.00 1.40
2316 4168 7.709613 GTGTGGTACCAAGGAGTATGTAAATAG 59.290 40.741 18.31 0.00 0.00 1.73
2317 4169 7.620491 TGTGGTACCAAGGAGTATGTAAATAGA 59.380 37.037 18.31 0.00 0.00 1.98
2318 4170 8.480501 GTGGTACCAAGGAGTATGTAAATAGAA 58.519 37.037 18.31 0.00 0.00 2.10
2319 4171 8.701895 TGGTACCAAGGAGTATGTAAATAGAAG 58.298 37.037 13.60 0.00 0.00 2.85
2320 4172 8.702819 GGTACCAAGGAGTATGTAAATAGAAGT 58.297 37.037 7.15 0.00 0.00 3.01
2323 4175 8.822805 ACCAAGGAGTATGTAAATAGAAGTTCA 58.177 33.333 5.50 0.00 0.00 3.18
2324 4176 9.667107 CCAAGGAGTATGTAAATAGAAGTTCAA 57.333 33.333 5.50 0.00 0.00 2.69
2337 4189 7.823745 ATAGAAGTTCAAAAGAAAAGGAGCA 57.176 32.000 5.50 0.00 0.00 4.26
2338 4190 6.721704 AGAAGTTCAAAAGAAAAGGAGCAT 57.278 33.333 5.50 0.00 0.00 3.79
2339 4191 6.510536 AGAAGTTCAAAAGAAAAGGAGCATG 58.489 36.000 5.50 0.00 0.00 4.06
2340 4192 5.859205 AGTTCAAAAGAAAAGGAGCATGT 57.141 34.783 0.00 0.00 0.00 3.21
2341 4193 6.959639 AGTTCAAAAGAAAAGGAGCATGTA 57.040 33.333 0.00 0.00 0.00 2.29
2342 4194 7.346751 AGTTCAAAAGAAAAGGAGCATGTAA 57.653 32.000 0.00 0.00 0.00 2.41
2343 4195 7.781056 AGTTCAAAAGAAAAGGAGCATGTAAA 58.219 30.769 0.00 0.00 0.00 2.01
2344 4196 8.424133 AGTTCAAAAGAAAAGGAGCATGTAAAT 58.576 29.630 0.00 0.00 0.00 1.40
2345 4197 9.691362 GTTCAAAAGAAAAGGAGCATGTAAATA 57.309 29.630 0.00 0.00 0.00 1.40
2349 4201 9.875691 AAAAGAAAAGGAGCATGTAAATATTCC 57.124 29.630 0.00 0.00 0.00 3.01
2350 4202 8.593945 AAGAAAAGGAGCATGTAAATATTCCA 57.406 30.769 0.00 0.00 0.00 3.53
2351 4203 8.593945 AGAAAAGGAGCATGTAAATATTCCAA 57.406 30.769 0.00 0.00 0.00 3.53
2352 4204 9.034800 AGAAAAGGAGCATGTAAATATTCCAAA 57.965 29.630 0.00 0.00 0.00 3.28
2353 4205 9.822185 GAAAAGGAGCATGTAAATATTCCAAAT 57.178 29.630 0.00 0.00 0.00 2.32
2354 4206 9.822185 AAAAGGAGCATGTAAATATTCCAAATC 57.178 29.630 0.00 0.00 0.00 2.17
2355 4207 8.537728 AAGGAGCATGTAAATATTCCAAATCA 57.462 30.769 0.00 0.00 0.00 2.57
2356 4208 7.945134 AGGAGCATGTAAATATTCCAAATCAC 58.055 34.615 0.00 0.00 0.00 3.06
2357 4209 7.781693 AGGAGCATGTAAATATTCCAAATCACT 59.218 33.333 0.00 0.00 0.00 3.41
2358 4210 8.416329 GGAGCATGTAAATATTCCAAATCACTT 58.584 33.333 0.00 0.00 0.00 3.16
2359 4211 9.241317 GAGCATGTAAATATTCCAAATCACTTG 57.759 33.333 0.00 0.00 34.52 3.16
2360 4212 8.970020 AGCATGTAAATATTCCAAATCACTTGA 58.030 29.630 0.00 0.00 37.17 3.02
2361 4213 9.585099 GCATGTAAATATTCCAAATCACTTGAA 57.415 29.630 0.00 0.00 37.17 2.69
2496 4356 2.821969 ACAACAACATGATGGCTCCTTC 59.178 45.455 7.95 0.00 0.00 3.46
2524 4384 1.898154 ACCTGTACTGCCGGTGATC 59.102 57.895 1.90 0.00 0.00 2.92
2539 4399 2.173356 GGTGATCCCATCATCTCCAACA 59.827 50.000 0.00 0.00 42.04 3.33
2556 4416 1.885388 CACCACAAACCGTCAGCGA 60.885 57.895 0.00 0.00 41.33 4.93
2573 4433 2.560542 AGCGATGGCCAATGTTTTGTTA 59.439 40.909 10.96 0.00 41.24 2.41
2650 4510 2.017049 CCACGAAGAATCCCATGGAAC 58.983 52.381 15.22 1.19 34.34 3.62
2674 4534 4.153117 GCAAATCTAATAGTCATCCAGCGG 59.847 45.833 0.00 0.00 0.00 5.52
2703 4563 3.460103 GTCTTACACTTGGTTTCCGTCA 58.540 45.455 0.00 0.00 0.00 4.35
2722 4582 2.822561 TCAAAGCGTGCATTAAATCCCA 59.177 40.909 0.00 0.00 0.00 4.37
2734 4594 4.740822 ATCCCACCAAGGTGCCGC 62.741 66.667 13.75 0.00 44.16 6.53
2822 4682 2.556287 GCGCATACCTTATGGCGC 59.444 61.111 14.08 14.08 45.99 6.53
2891 4752 8.380743 TGTTAGTGTTAGGAAAGCGAATAAAA 57.619 30.769 0.00 0.00 0.00 1.52
2940 4801 8.903820 TCATCGATGGACACCTATTATATGTAG 58.096 37.037 24.61 0.00 0.00 2.74
2963 4824 5.648092 AGGCATGTAAGAATGGTTTACTGAC 59.352 40.000 0.00 0.00 33.29 3.51
2994 4855 8.282592 GCAACCAGGAAATTAAAAGCTTTTTAG 58.717 33.333 28.21 9.20 0.00 1.85
3124 4985 9.000486 GTTATGGTTTTAAGTGCTTCTCTAGTT 58.000 33.333 0.00 0.00 0.00 2.24
3214 5075 5.748402 AGAGAGATGTGCATGTAATTTCCA 58.252 37.500 0.00 0.00 0.00 3.53
3271 5132 8.248117 AGATTTTGATTTGAGCAAACATAAGC 57.752 30.769 0.00 4.19 35.20 3.09
3297 5158 5.541484 TGATGAGGATACAGTGCAGATACAT 59.459 40.000 0.00 0.00 41.41 2.29
3701 5562 4.667573 TCCAACATGTTATTTGCCCAGTA 58.332 39.130 11.53 0.00 0.00 2.74
3719 5580 6.660949 GCCCAGTAAATTATTGCTCATCCTAT 59.339 38.462 0.00 0.00 27.98 2.57
3722 5583 8.105829 CCAGTAAATTATTGCTCATCCTATCCT 58.894 37.037 0.00 0.00 27.98 3.24
3725 5586 9.384764 GTAAATTATTGCTCATCCTATCCTACC 57.615 37.037 0.00 0.00 0.00 3.18
3726 5587 7.821134 AATTATTGCTCATCCTATCCTACCT 57.179 36.000 0.00 0.00 0.00 3.08
3727 5588 7.821134 ATTATTGCTCATCCTATCCTACCTT 57.179 36.000 0.00 0.00 0.00 3.50
3831 5692 2.556622 CGTTACAGGGGCACAAAAGATT 59.443 45.455 0.00 0.00 0.00 2.40
3843 5704 4.678742 GCACAAAAGATTTGAAGTCTCTGC 59.321 41.667 9.62 3.79 0.00 4.26
3916 5785 9.932207 TTGATTTTGAATATCATTTCTTGCACT 57.068 25.926 0.00 0.00 32.43 4.40
3917 5786 9.577110 TGATTTTGAATATCATTTCTTGCACTC 57.423 29.630 0.00 0.00 0.00 3.51
3918 5787 9.577110 GATTTTGAATATCATTTCTTGCACTCA 57.423 29.630 0.00 0.00 0.00 3.41
3919 5788 9.932207 ATTTTGAATATCATTTCTTGCACTCAA 57.068 25.926 0.00 0.00 0.00 3.02
3920 5789 9.932207 TTTTGAATATCATTTCTTGCACTCAAT 57.068 25.926 0.00 0.00 0.00 2.57
3924 5793 9.539139 GAATATCATTTCTTGCACTCAATATCG 57.461 33.333 0.00 0.00 0.00 2.92
3949 5818 4.626042 CACACATGAGAATAGCTACTCCC 58.374 47.826 0.00 0.00 32.84 4.30
3955 5824 3.706594 TGAGAATAGCTACTCCCCTGTTG 59.293 47.826 0.00 0.00 32.84 3.33
4029 5899 8.579682 AATATGTCTGCTTTTGAAACTTGAAC 57.420 30.769 0.00 0.00 0.00 3.18
4032 5903 5.633182 TGTCTGCTTTTGAAACTTGAACAAC 59.367 36.000 0.00 0.00 0.00 3.32
4036 5907 5.404968 TGCTTTTGAAACTTGAACAACACTG 59.595 36.000 0.00 0.00 0.00 3.66
4081 5954 2.939103 AGTTAATCGGCATCTTGTCAGC 59.061 45.455 0.00 0.00 0.00 4.26
4104 5977 0.830444 TTGCTACTCGGTGGGTCACT 60.830 55.000 0.00 0.00 34.40 3.41
4281 6154 6.995686 TGTTTTTGCTTCTGATTGGTCTAGTA 59.004 34.615 0.00 0.00 0.00 1.82
4297 6170 8.319057 TGGTCTAGTACTCATTTACATTGGAT 57.681 34.615 0.00 0.00 0.00 3.41
4374 6248 6.390504 ACTCTTACCCCATACATCAGGATTA 58.609 40.000 0.00 0.00 0.00 1.75
4466 6340 5.337009 GCATATTTGATTATTCCTGGGGCAG 60.337 44.000 0.00 0.00 0.00 4.85
4470 6344 3.364549 TGATTATTCCTGGGGCAGTTTG 58.635 45.455 0.00 0.00 0.00 2.93
4472 6346 1.377690 TATTCCTGGGGCAGTTTGGA 58.622 50.000 0.00 0.00 0.00 3.53
4473 6347 0.712380 ATTCCTGGGGCAGTTTGGAT 59.288 50.000 0.00 0.00 0.00 3.41
4575 6452 2.238395 TGCACTGCTACATCCATTGGTA 59.762 45.455 1.86 0.00 0.00 3.25
4787 6664 6.715464 CGCTTTTTATAATCATGAAGGTCGT 58.285 36.000 0.00 0.00 0.00 4.34
4889 6766 2.808906 AGGGGATCAAGCCAACTTAC 57.191 50.000 0.00 0.00 33.74 2.34
5061 6938 2.110296 GCATGCCTAGCCTTGTTCC 58.890 57.895 6.36 0.00 0.00 3.62
5138 7017 2.795291 TCCCCATCCTGCTATGTACT 57.205 50.000 0.00 0.00 0.00 2.73
5183 7062 6.730507 ACCCAGGAATGTAAATTTTCAGGATT 59.269 34.615 0.00 0.00 0.00 3.01
5254 7134 1.699730 TCTCCGACCTTTGTGTCAGA 58.300 50.000 0.00 0.00 34.88 3.27
5270 7150 7.658179 TGTGTCAGATTAACTCTTTGATGTC 57.342 36.000 0.00 0.00 29.16 3.06
5287 7167 4.529769 TGATGTCTGGTGAAGATCTGAGTT 59.470 41.667 0.00 0.00 37.23 3.01
5354 7234 1.455849 CCACCCTTCTCTGCACCAA 59.544 57.895 0.00 0.00 0.00 3.67
5424 7304 7.010460 GGCTTGATTTTTAAACATACCATGCTC 59.990 37.037 10.82 2.98 0.00 4.26
5427 7307 7.771183 TGATTTTTAAACATACCATGCTCTCC 58.229 34.615 0.00 0.00 0.00 3.71
5428 7308 7.395772 TGATTTTTAAACATACCATGCTCTCCA 59.604 33.333 0.00 0.00 0.00 3.86
5437 7317 2.554032 ACCATGCTCTCCAAAAGAAACG 59.446 45.455 0.00 0.00 32.23 3.60
5438 7318 2.813754 CCATGCTCTCCAAAAGAAACGA 59.186 45.455 0.00 0.00 32.23 3.85
5440 7320 4.470462 CATGCTCTCCAAAAGAAACGAAG 58.530 43.478 0.00 0.00 32.23 3.79
5442 7322 2.663063 GCTCTCCAAAAGAAACGAAGCG 60.663 50.000 0.00 0.00 32.23 4.68
5446 7326 2.116366 CCAAAAGAAACGAAGCGGTTG 58.884 47.619 3.70 0.00 36.71 3.77
5538 7418 3.084039 CCAGTTACATTGTCCTGTGCAT 58.916 45.455 12.70 0.00 0.00 3.96
5539 7419 3.119743 CCAGTTACATTGTCCTGTGCATG 60.120 47.826 12.70 0.00 0.00 4.06
5544 7424 3.700538 ACATTGTCCTGTGCATGGTTAT 58.299 40.909 8.29 0.04 0.00 1.89
5579 7459 3.058224 CGGGTCACAATCTCAACTTTTCC 60.058 47.826 0.00 0.00 0.00 3.13
5649 7529 4.687215 TCCGTGCTCAGCTGGTGC 62.687 66.667 15.13 18.44 40.05 5.01
5855 7738 1.064505 CGGTGGCATTGACATCATGAC 59.935 52.381 3.17 0.00 0.00 3.06
5902 7825 8.906867 ACATATTTGATTACAGCTTGCTATGTT 58.093 29.630 0.00 0.00 0.00 2.71
5937 7860 1.430632 CAAGTAATGCTGCGCTGGG 59.569 57.895 16.47 3.88 0.00 4.45
6050 7981 4.743705 TTTTTCACCACCCCCTTGTATA 57.256 40.909 0.00 0.00 0.00 1.47
6051 7982 4.743705 TTTTCACCACCCCCTTGTATAA 57.256 40.909 0.00 0.00 0.00 0.98
6052 7983 4.743705 TTTCACCACCCCCTTGTATAAA 57.256 40.909 0.00 0.00 0.00 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
157 158 1.694169 ATCGAGGCTGACCCCCAAT 60.694 57.895 0.00 0.00 36.11 3.16
283 285 2.191400 CAATCCCCTCACCTTCTCTCA 58.809 52.381 0.00 0.00 0.00 3.27
457 2041 2.333701 AATTCCCATACCCCGCCGAC 62.334 60.000 0.00 0.00 0.00 4.79
652 2237 8.526978 TCAGAGCATCCATGAATAAGTATCTAC 58.473 37.037 0.00 0.00 33.66 2.59
666 2251 0.400975 GGGCATCTCAGAGCATCCAT 59.599 55.000 0.00 0.00 33.66 3.41
730 2318 6.656632 TTTGTTTGACTACAATAATGCCCA 57.343 33.333 0.00 0.00 37.81 5.36
731 2319 7.954788 TTTTTGTTTGACTACAATAATGCCC 57.045 32.000 0.00 0.00 37.81 5.36
769 2358 4.115199 GGGCCCGCTCATCCACTT 62.115 66.667 5.69 0.00 0.00 3.16
784 2373 4.024545 ACGTAGGGGCCGTTTGGG 62.025 66.667 3.09 0.00 34.28 4.12
785 2374 2.744709 CACGTAGGGGCCGTTTGG 60.745 66.667 3.09 0.00 36.17 3.28
787 2376 2.344872 GTCACGTAGGGGCCGTTT 59.655 61.111 3.09 0.00 36.17 3.60
1309 3135 1.134068 TGTGACCAAAACATCCCGTGA 60.134 47.619 0.00 0.00 0.00 4.35
1310 3136 1.313772 TGTGACCAAAACATCCCGTG 58.686 50.000 0.00 0.00 0.00 4.94
1336 3162 2.130815 CGATTCAAAACGCTCGACAG 57.869 50.000 0.00 0.00 33.07 3.51
1344 3170 0.179225 CGGGTCAGCGATTCAAAACG 60.179 55.000 0.00 0.00 0.00 3.60
1361 3192 0.678684 AAAACCTAATCACCCGCCGG 60.679 55.000 0.00 0.00 0.00 6.13
1513 3344 1.757423 GCCAGCCACCCATGTTTTGT 61.757 55.000 0.00 0.00 0.00 2.83
1514 3345 1.004679 GCCAGCCACCCATGTTTTG 60.005 57.895 0.00 0.00 0.00 2.44
1515 3346 1.152269 AGCCAGCCACCCATGTTTT 60.152 52.632 0.00 0.00 0.00 2.43
1519 3350 2.439701 CTGAGCCAGCCACCCATG 60.440 66.667 0.00 0.00 0.00 3.66
1520 3351 3.736224 CCTGAGCCAGCCACCCAT 61.736 66.667 0.00 0.00 0.00 4.00
1524 3355 4.704833 TTCGCCTGAGCCAGCCAC 62.705 66.667 0.00 0.00 34.57 5.01
1528 3359 1.892819 TTCTCCTTCGCCTGAGCCAG 61.893 60.000 0.00 0.00 34.57 4.85
1562 3393 4.063967 CTACGACACCGCAGCCCA 62.064 66.667 0.00 0.00 39.95 5.36
1576 3408 2.417649 GATCCTACCGTGGCGCCTAC 62.418 65.000 29.70 21.86 0.00 3.18
1587 3419 3.243501 TGCGTTAACATACGGATCCTACC 60.244 47.826 10.75 0.00 41.65 3.18
1597 3429 3.838550 CGTCAAAGCTTGCGTTAACATAC 59.161 43.478 0.00 0.00 0.00 2.39
1600 3432 1.666700 ACGTCAAAGCTTGCGTTAACA 59.333 42.857 15.23 0.00 39.21 2.41
1613 3445 6.726035 GAATCAAATTCGAAACACGTCAAA 57.274 33.333 0.00 0.00 43.13 2.69
1709 3541 2.182614 AATATACCGCGCCGCAATGC 62.183 55.000 10.75 0.00 0.00 3.56
1720 3552 8.454570 AAACCAATAGTACCCAAAATATACCG 57.545 34.615 0.00 0.00 0.00 4.02
1765 3597 7.397192 ACAAGTTTACGGAGGGAGTAACTAATA 59.603 37.037 0.00 0.00 34.25 0.98
1766 3598 6.212187 ACAAGTTTACGGAGGGAGTAACTAAT 59.788 38.462 0.00 0.00 34.25 1.73
1767 3599 5.539955 ACAAGTTTACGGAGGGAGTAACTAA 59.460 40.000 0.00 0.00 34.25 2.24
1768 3600 5.079643 ACAAGTTTACGGAGGGAGTAACTA 58.920 41.667 0.00 0.00 34.25 2.24
1769 3601 3.899980 ACAAGTTTACGGAGGGAGTAACT 59.100 43.478 0.00 0.00 34.25 2.24
1770 3602 4.021632 AGACAAGTTTACGGAGGGAGTAAC 60.022 45.833 0.00 0.00 34.25 2.50
1772 3604 3.771216 AGACAAGTTTACGGAGGGAGTA 58.229 45.455 0.00 0.00 0.00 2.59
1773 3605 2.606378 AGACAAGTTTACGGAGGGAGT 58.394 47.619 0.00 0.00 0.00 3.85
1774 3606 3.326747 CAAGACAAGTTTACGGAGGGAG 58.673 50.000 0.00 0.00 0.00 4.30
1775 3607 2.038033 CCAAGACAAGTTTACGGAGGGA 59.962 50.000 0.00 0.00 0.00 4.20
1776 3608 2.224450 ACCAAGACAAGTTTACGGAGGG 60.224 50.000 0.00 0.00 0.00 4.30
1777 3609 3.121738 ACCAAGACAAGTTTACGGAGG 57.878 47.619 0.00 0.00 0.00 4.30
1779 3611 4.515361 TCAAACCAAGACAAGTTTACGGA 58.485 39.130 0.00 0.00 34.52 4.69
1783 3635 7.757624 GTGTGAATTCAAACCAAGACAAGTTTA 59.242 33.333 16.76 0.00 34.52 2.01
1786 3638 5.650543 GTGTGAATTCAAACCAAGACAAGT 58.349 37.500 16.76 0.00 0.00 3.16
1799 3651 6.636454 ATCTAACCTAAGGGTGTGAATTCA 57.364 37.500 3.38 3.38 46.67 2.57
1806 3658 6.152831 GCATTTTGAATCTAACCTAAGGGTGT 59.847 38.462 0.00 0.00 46.67 4.16
1929 3781 7.227512 ACATCTTGTAAAAGTGAACAGAGGAAG 59.772 37.037 0.00 0.00 0.00 3.46
1930 3782 7.054124 ACATCTTGTAAAAGTGAACAGAGGAA 58.946 34.615 0.00 0.00 0.00 3.36
1931 3783 6.591935 ACATCTTGTAAAAGTGAACAGAGGA 58.408 36.000 0.00 0.00 0.00 3.71
1932 3784 6.867662 ACATCTTGTAAAAGTGAACAGAGG 57.132 37.500 0.00 0.00 0.00 3.69
1947 3799 9.429359 CTGTCTGAACTATCTAAAACATCTTGT 57.571 33.333 0.00 0.00 0.00 3.16
1948 3800 8.386606 GCTGTCTGAACTATCTAAAACATCTTG 58.613 37.037 0.00 0.00 0.00 3.02
1949 3801 8.317679 AGCTGTCTGAACTATCTAAAACATCTT 58.682 33.333 0.00 0.00 0.00 2.40
1950 3802 7.846066 AGCTGTCTGAACTATCTAAAACATCT 58.154 34.615 0.00 0.00 0.00 2.90
1951 3803 7.223777 GGAGCTGTCTGAACTATCTAAAACATC 59.776 40.741 0.00 0.00 0.00 3.06
1952 3804 7.044798 GGAGCTGTCTGAACTATCTAAAACAT 58.955 38.462 0.00 0.00 0.00 2.71
1953 3805 6.398918 GGAGCTGTCTGAACTATCTAAAACA 58.601 40.000 0.00 0.00 0.00 2.83
1954 3806 5.813157 GGGAGCTGTCTGAACTATCTAAAAC 59.187 44.000 0.00 0.00 0.00 2.43
1955 3807 5.483937 TGGGAGCTGTCTGAACTATCTAAAA 59.516 40.000 0.00 0.00 0.00 1.52
1956 3808 5.023452 TGGGAGCTGTCTGAACTATCTAAA 58.977 41.667 0.00 0.00 0.00 1.85
1957 3809 4.610333 TGGGAGCTGTCTGAACTATCTAA 58.390 43.478 0.00 0.00 0.00 2.10
1958 3810 4.251103 TGGGAGCTGTCTGAACTATCTA 57.749 45.455 0.00 0.00 0.00 1.98
1959 3811 3.107402 TGGGAGCTGTCTGAACTATCT 57.893 47.619 0.00 0.00 0.00 1.98
1960 3812 3.895232 TTGGGAGCTGTCTGAACTATC 57.105 47.619 0.00 0.00 0.00 2.08
1961 3813 4.640771 TTTTGGGAGCTGTCTGAACTAT 57.359 40.909 0.00 0.00 0.00 2.12
1962 3814 4.640771 ATTTTGGGAGCTGTCTGAACTA 57.359 40.909 0.00 0.00 0.00 2.24
1963 3815 3.515602 ATTTTGGGAGCTGTCTGAACT 57.484 42.857 0.00 0.00 0.00 3.01
1964 3816 4.327680 ACTATTTTGGGAGCTGTCTGAAC 58.672 43.478 0.00 0.00 0.00 3.18
1965 3817 4.640771 ACTATTTTGGGAGCTGTCTGAA 57.359 40.909 0.00 0.00 0.00 3.02
1966 3818 4.041567 TGAACTATTTTGGGAGCTGTCTGA 59.958 41.667 0.00 0.00 0.00 3.27
1967 3819 4.326826 TGAACTATTTTGGGAGCTGTCTG 58.673 43.478 0.00 0.00 0.00 3.51
1968 3820 4.640771 TGAACTATTTTGGGAGCTGTCT 57.359 40.909 0.00 0.00 0.00 3.41
1969 3821 5.705609 TTTGAACTATTTTGGGAGCTGTC 57.294 39.130 0.00 0.00 0.00 3.51
1970 3822 5.774690 TGATTTGAACTATTTTGGGAGCTGT 59.225 36.000 0.00 0.00 0.00 4.40
1971 3823 6.271488 TGATTTGAACTATTTTGGGAGCTG 57.729 37.500 0.00 0.00 0.00 4.24
1972 3824 5.105595 GCTGATTTGAACTATTTTGGGAGCT 60.106 40.000 0.00 0.00 0.00 4.09
1973 3825 5.105063 GCTGATTTGAACTATTTTGGGAGC 58.895 41.667 0.00 0.00 0.00 4.70
1974 3826 6.071728 ACAGCTGATTTGAACTATTTTGGGAG 60.072 38.462 23.35 0.00 0.00 4.30
1975 3827 5.774690 ACAGCTGATTTGAACTATTTTGGGA 59.225 36.000 23.35 0.00 0.00 4.37
1976 3828 6.029346 ACAGCTGATTTGAACTATTTTGGG 57.971 37.500 23.35 0.00 0.00 4.12
1977 3829 6.917533 AGACAGCTGATTTGAACTATTTTGG 58.082 36.000 23.35 0.00 0.00 3.28
1978 3830 9.897744 TTTAGACAGCTGATTTGAACTATTTTG 57.102 29.630 23.35 0.00 0.00 2.44
1980 3832 9.899226 GTTTTAGACAGCTGATTTGAACTATTT 57.101 29.630 23.35 0.00 0.00 1.40
1981 3833 8.230486 CGTTTTAGACAGCTGATTTGAACTATT 58.770 33.333 23.35 0.00 0.00 1.73
1982 3834 7.387948 ACGTTTTAGACAGCTGATTTGAACTAT 59.612 33.333 23.35 7.56 0.00 2.12
1983 3835 6.704493 ACGTTTTAGACAGCTGATTTGAACTA 59.296 34.615 23.35 8.75 0.00 2.24
1984 3836 5.527582 ACGTTTTAGACAGCTGATTTGAACT 59.472 36.000 23.35 9.66 0.00 3.01
1985 3837 5.748592 ACGTTTTAGACAGCTGATTTGAAC 58.251 37.500 23.35 16.75 0.00 3.18
1986 3838 5.758296 AGACGTTTTAGACAGCTGATTTGAA 59.242 36.000 23.35 6.61 0.00 2.69
1987 3839 5.297547 AGACGTTTTAGACAGCTGATTTGA 58.702 37.500 23.35 0.00 0.00 2.69
1988 3840 5.597813 AGACGTTTTAGACAGCTGATTTG 57.402 39.130 23.35 3.99 0.00 2.32
1989 3841 7.907214 ATAAGACGTTTTAGACAGCTGATTT 57.093 32.000 23.35 7.66 0.00 2.17
1990 3842 8.997621 TTATAAGACGTTTTAGACAGCTGATT 57.002 30.769 23.35 10.36 0.00 2.57
1991 3843 8.997621 TTTATAAGACGTTTTAGACAGCTGAT 57.002 30.769 23.35 11.17 0.00 2.90
1992 3844 8.821147 TTTTATAAGACGTTTTAGACAGCTGA 57.179 30.769 23.35 0.00 0.00 4.26
1993 3845 9.530129 CTTTTTATAAGACGTTTTAGACAGCTG 57.470 33.333 13.48 13.48 0.00 4.24
1994 3846 8.718734 CCTTTTTATAAGACGTTTTAGACAGCT 58.281 33.333 4.75 0.00 0.00 4.24
1995 3847 8.715088 TCCTTTTTATAAGACGTTTTAGACAGC 58.285 33.333 4.75 0.00 0.00 4.40
1998 3850 9.521179 CGTTCCTTTTTATAAGACGTTTTAGAC 57.479 33.333 4.75 0.00 0.00 2.59
1999 3851 8.711457 CCGTTCCTTTTTATAAGACGTTTTAGA 58.289 33.333 4.75 0.00 0.00 2.10
2000 3852 8.711457 TCCGTTCCTTTTTATAAGACGTTTTAG 58.289 33.333 4.75 0.00 0.00 1.85
2001 3853 8.600449 TCCGTTCCTTTTTATAAGACGTTTTA 57.400 30.769 0.52 0.52 0.00 1.52
2002 3854 7.308169 CCTCCGTTCCTTTTTATAAGACGTTTT 60.308 37.037 0.00 0.00 0.00 2.43
2003 3855 6.148315 CCTCCGTTCCTTTTTATAAGACGTTT 59.852 38.462 0.00 0.00 0.00 3.60
2004 3856 5.640783 CCTCCGTTCCTTTTTATAAGACGTT 59.359 40.000 0.00 0.00 0.00 3.99
2005 3857 5.173664 CCTCCGTTCCTTTTTATAAGACGT 58.826 41.667 0.00 0.00 0.00 4.34
2006 3858 4.569564 CCCTCCGTTCCTTTTTATAAGACG 59.430 45.833 0.00 0.00 0.00 4.18
2007 3859 5.737860 TCCCTCCGTTCCTTTTTATAAGAC 58.262 41.667 0.00 0.00 0.00 3.01
2008 3860 5.486419 ACTCCCTCCGTTCCTTTTTATAAGA 59.514 40.000 0.00 0.00 0.00 2.10
2009 3861 5.742063 ACTCCCTCCGTTCCTTTTTATAAG 58.258 41.667 0.00 0.00 0.00 1.73
2010 3862 5.767277 ACTCCCTCCGTTCCTTTTTATAA 57.233 39.130 0.00 0.00 0.00 0.98
2011 3863 6.197168 TCTACTCCCTCCGTTCCTTTTTATA 58.803 40.000 0.00 0.00 0.00 0.98
2012 3864 5.028131 TCTACTCCCTCCGTTCCTTTTTAT 58.972 41.667 0.00 0.00 0.00 1.40
2013 3865 4.419282 TCTACTCCCTCCGTTCCTTTTTA 58.581 43.478 0.00 0.00 0.00 1.52
2014 3866 3.245441 TCTACTCCCTCCGTTCCTTTTT 58.755 45.455 0.00 0.00 0.00 1.94
2015 3867 2.898662 TCTACTCCCTCCGTTCCTTTT 58.101 47.619 0.00 0.00 0.00 2.27
2016 3868 2.617840 TCTACTCCCTCCGTTCCTTT 57.382 50.000 0.00 0.00 0.00 3.11
2017 3869 2.617840 TTCTACTCCCTCCGTTCCTT 57.382 50.000 0.00 0.00 0.00 3.36
2018 3870 2.566279 GTTTTCTACTCCCTCCGTTCCT 59.434 50.000 0.00 0.00 0.00 3.36
2019 3871 2.301009 TGTTTTCTACTCCCTCCGTTCC 59.699 50.000 0.00 0.00 0.00 3.62
2020 3872 3.672767 TGTTTTCTACTCCCTCCGTTC 57.327 47.619 0.00 0.00 0.00 3.95
2021 3873 4.635699 AATGTTTTCTACTCCCTCCGTT 57.364 40.909 0.00 0.00 0.00 4.44
2022 3874 4.635699 AAATGTTTTCTACTCCCTCCGT 57.364 40.909 0.00 0.00 0.00 4.69
2023 3875 6.346096 TGATAAATGTTTTCTACTCCCTCCG 58.654 40.000 0.00 0.00 0.00 4.63
2024 3876 7.339482 ACTGATAAATGTTTTCTACTCCCTCC 58.661 38.462 0.00 0.00 0.00 4.30
2025 3877 8.794335 AACTGATAAATGTTTTCTACTCCCTC 57.206 34.615 0.00 0.00 0.00 4.30
2026 3878 9.892130 CTAACTGATAAATGTTTTCTACTCCCT 57.108 33.333 0.00 0.00 0.00 4.20
2027 3879 9.668497 ACTAACTGATAAATGTTTTCTACTCCC 57.332 33.333 0.00 0.00 0.00 4.30
2105 3957 3.844211 ACATACTCCTTGGTACCACACAT 59.156 43.478 16.04 1.95 0.00 3.21
2239 4091 9.555727 AGAACTTATGCTCAAAGTTACAACTAA 57.444 29.630 10.33 0.00 44.94 2.24
2240 4092 8.988934 CAGAACTTATGCTCAAAGTTACAACTA 58.011 33.333 10.33 0.00 44.94 2.24
2241 4093 7.499232 ACAGAACTTATGCTCAAAGTTACAACT 59.501 33.333 10.33 0.00 44.94 3.16
2242 4094 7.587757 CACAGAACTTATGCTCAAAGTTACAAC 59.412 37.037 10.33 1.63 44.94 3.32
2243 4095 7.282224 ACACAGAACTTATGCTCAAAGTTACAA 59.718 33.333 10.33 0.00 44.94 2.41
2244 4096 6.765989 ACACAGAACTTATGCTCAAAGTTACA 59.234 34.615 10.33 0.00 44.94 2.41
2245 4097 7.190920 ACACAGAACTTATGCTCAAAGTTAC 57.809 36.000 10.33 6.25 44.94 2.50
2246 4098 8.896320 TTACACAGAACTTATGCTCAAAGTTA 57.104 30.769 10.33 0.00 44.94 2.24
2247 4099 7.801716 TTACACAGAACTTATGCTCAAAGTT 57.198 32.000 10.19 10.19 46.97 2.66
2248 4100 7.986085 ATTACACAGAACTTATGCTCAAAGT 57.014 32.000 0.00 0.00 38.82 2.66
2249 4101 9.334693 GAAATTACACAGAACTTATGCTCAAAG 57.665 33.333 0.00 0.00 0.00 2.77
2250 4102 8.845227 TGAAATTACACAGAACTTATGCTCAAA 58.155 29.630 0.00 0.00 0.00 2.69
2251 4103 8.389779 TGAAATTACACAGAACTTATGCTCAA 57.610 30.769 0.00 0.00 0.00 3.02
2252 4104 7.977789 TGAAATTACACAGAACTTATGCTCA 57.022 32.000 0.00 0.00 0.00 4.26
2253 4105 7.848051 CGATGAAATTACACAGAACTTATGCTC 59.152 37.037 0.00 0.00 0.00 4.26
2254 4106 7.549134 TCGATGAAATTACACAGAACTTATGCT 59.451 33.333 0.00 0.00 0.00 3.79
2255 4107 7.684670 TCGATGAAATTACACAGAACTTATGC 58.315 34.615 0.00 0.00 0.00 3.14
2258 4110 9.268268 ACTTTCGATGAAATTACACAGAACTTA 57.732 29.630 0.00 0.00 30.85 2.24
2259 4111 8.154649 ACTTTCGATGAAATTACACAGAACTT 57.845 30.769 0.00 0.00 30.85 2.66
2260 4112 7.730364 ACTTTCGATGAAATTACACAGAACT 57.270 32.000 0.00 0.00 30.85 3.01
2270 4122 8.956426 ACCACACATAATACTTTCGATGAAATT 58.044 29.630 0.00 0.00 30.85 1.82
2271 4123 8.506168 ACCACACATAATACTTTCGATGAAAT 57.494 30.769 0.00 0.00 30.85 2.17
2272 4124 7.915293 ACCACACATAATACTTTCGATGAAA 57.085 32.000 0.00 0.00 0.00 2.69
2273 4125 7.493320 GGTACCACACATAATACTTTCGATGAA 59.507 37.037 7.15 0.00 0.00 2.57
2274 4126 6.982141 GGTACCACACATAATACTTTCGATGA 59.018 38.462 7.15 0.00 0.00 2.92
2275 4127 6.759356 TGGTACCACACATAATACTTTCGATG 59.241 38.462 11.60 0.00 0.00 3.84
2276 4128 6.880484 TGGTACCACACATAATACTTTCGAT 58.120 36.000 11.60 0.00 0.00 3.59
2277 4129 6.283544 TGGTACCACACATAATACTTTCGA 57.716 37.500 11.60 0.00 0.00 3.71
2278 4130 6.036735 CCTTGGTACCACACATAATACTTTCG 59.963 42.308 16.04 0.00 0.00 3.46
2279 4131 7.107542 TCCTTGGTACCACACATAATACTTTC 58.892 38.462 16.04 0.00 0.00 2.62
2280 4132 7.023171 TCCTTGGTACCACACATAATACTTT 57.977 36.000 16.04 0.00 0.00 2.66
2281 4133 6.214819 ACTCCTTGGTACCACACATAATACTT 59.785 38.462 16.04 0.00 0.00 2.24
2282 4134 5.724854 ACTCCTTGGTACCACACATAATACT 59.275 40.000 16.04 0.00 0.00 2.12
2283 4135 5.985911 ACTCCTTGGTACCACACATAATAC 58.014 41.667 16.04 0.00 0.00 1.89
2284 4136 7.346175 ACATACTCCTTGGTACCACACATAATA 59.654 37.037 16.04 2.10 0.00 0.98
2285 4137 6.157994 ACATACTCCTTGGTACCACACATAAT 59.842 38.462 16.04 2.03 0.00 1.28
2286 4138 5.486063 ACATACTCCTTGGTACCACACATAA 59.514 40.000 16.04 0.00 0.00 1.90
2287 4139 5.027460 ACATACTCCTTGGTACCACACATA 58.973 41.667 16.04 4.34 0.00 2.29
2288 4140 3.844211 ACATACTCCTTGGTACCACACAT 59.156 43.478 16.04 1.95 0.00 3.21
2289 4141 3.244582 ACATACTCCTTGGTACCACACA 58.755 45.455 16.04 0.00 0.00 3.72
2290 4142 3.975168 ACATACTCCTTGGTACCACAC 57.025 47.619 16.04 0.00 0.00 3.82
2291 4143 6.630203 ATTTACATACTCCTTGGTACCACA 57.370 37.500 16.04 5.34 0.00 4.17
2292 4144 8.015185 TCTATTTACATACTCCTTGGTACCAC 57.985 38.462 16.04 0.00 0.00 4.16
2293 4145 8.612486 TTCTATTTACATACTCCTTGGTACCA 57.388 34.615 11.60 11.60 0.00 3.25
2294 4146 8.702819 ACTTCTATTTACATACTCCTTGGTACC 58.297 37.037 4.43 4.43 0.00 3.34
2297 4149 8.822805 TGAACTTCTATTTACATACTCCTTGGT 58.177 33.333 0.00 0.00 0.00 3.67
2298 4150 9.667107 TTGAACTTCTATTTACATACTCCTTGG 57.333 33.333 0.00 0.00 0.00 3.61
2311 4163 8.695456 TGCTCCTTTTCTTTTGAACTTCTATTT 58.305 29.630 0.00 0.00 38.30 1.40
2312 4164 8.237811 TGCTCCTTTTCTTTTGAACTTCTATT 57.762 30.769 0.00 0.00 38.30 1.73
2313 4165 7.823745 TGCTCCTTTTCTTTTGAACTTCTAT 57.176 32.000 0.00 0.00 38.30 1.98
2314 4166 7.285401 ACATGCTCCTTTTCTTTTGAACTTCTA 59.715 33.333 0.00 0.00 38.30 2.10
2315 4167 6.097412 ACATGCTCCTTTTCTTTTGAACTTCT 59.903 34.615 0.00 0.00 38.30 2.85
2316 4168 6.276091 ACATGCTCCTTTTCTTTTGAACTTC 58.724 36.000 0.00 0.00 38.30 3.01
2317 4169 6.225981 ACATGCTCCTTTTCTTTTGAACTT 57.774 33.333 0.00 0.00 38.30 2.66
2318 4170 5.859205 ACATGCTCCTTTTCTTTTGAACT 57.141 34.783 0.00 0.00 38.30 3.01
2319 4171 8.593492 ATTTACATGCTCCTTTTCTTTTGAAC 57.407 30.769 0.00 0.00 38.30 3.18
2323 4175 9.875691 GGAATATTTACATGCTCCTTTTCTTTT 57.124 29.630 0.00 0.00 0.00 2.27
2324 4176 9.034800 TGGAATATTTACATGCTCCTTTTCTTT 57.965 29.630 0.00 0.00 0.00 2.52
2325 4177 8.593945 TGGAATATTTACATGCTCCTTTTCTT 57.406 30.769 0.00 0.00 0.00 2.52
2326 4178 8.593945 TTGGAATATTTACATGCTCCTTTTCT 57.406 30.769 0.00 0.00 0.00 2.52
2327 4179 9.822185 ATTTGGAATATTTACATGCTCCTTTTC 57.178 29.630 0.00 0.00 0.00 2.29
2328 4180 9.822185 GATTTGGAATATTTACATGCTCCTTTT 57.178 29.630 0.00 0.00 0.00 2.27
2329 4181 8.980596 TGATTTGGAATATTTACATGCTCCTTT 58.019 29.630 0.00 0.00 0.00 3.11
2330 4182 8.416329 GTGATTTGGAATATTTACATGCTCCTT 58.584 33.333 0.00 0.00 0.00 3.36
2331 4183 7.781693 AGTGATTTGGAATATTTACATGCTCCT 59.218 33.333 0.00 0.00 0.00 3.69
2332 4184 7.945134 AGTGATTTGGAATATTTACATGCTCC 58.055 34.615 0.00 0.00 0.00 4.70
2333 4185 9.241317 CAAGTGATTTGGAATATTTACATGCTC 57.759 33.333 0.00 0.00 32.95 4.26
2334 4186 8.970020 TCAAGTGATTTGGAATATTTACATGCT 58.030 29.630 0.00 0.00 37.39 3.79
2335 4187 9.585099 TTCAAGTGATTTGGAATATTTACATGC 57.415 29.630 0.00 0.00 37.39 4.06
2352 4204 9.071276 CCAGGCTTAAATATATGTTCAAGTGAT 57.929 33.333 0.00 0.00 0.00 3.06
2353 4205 8.271458 TCCAGGCTTAAATATATGTTCAAGTGA 58.729 33.333 0.00 0.00 0.00 3.41
2354 4206 8.450578 TCCAGGCTTAAATATATGTTCAAGTG 57.549 34.615 0.00 0.00 0.00 3.16
2355 4207 9.474313 TTTCCAGGCTTAAATATATGTTCAAGT 57.526 29.630 0.00 0.00 0.00 3.16
2358 4210 9.474313 AGTTTTCCAGGCTTAAATATATGTTCA 57.526 29.630 0.00 0.00 0.00 3.18
2371 4223 9.138596 TGTAATAAAGTAAAGTTTTCCAGGCTT 57.861 29.630 0.00 0.00 0.00 4.35
2372 4224 8.700439 TGTAATAAAGTAAAGTTTTCCAGGCT 57.300 30.769 0.00 0.00 0.00 4.58
2496 4356 1.269309 GCAGTACAGGTGGAGATAGCG 60.269 57.143 0.00 0.00 0.00 4.26
2524 4384 1.004628 TGTGGTGTTGGAGATGATGGG 59.995 52.381 0.00 0.00 0.00 4.00
2539 4399 1.070786 ATCGCTGACGGTTTGTGGT 59.929 52.632 0.00 0.00 40.63 4.16
2556 4416 3.556843 GCAGGTAACAAAACATTGGCCAT 60.557 43.478 6.09 0.00 41.41 4.40
2650 4510 4.143242 CGCTGGATGACTATTAGATTTGCG 60.143 45.833 0.00 0.00 0.00 4.85
2674 4534 2.104281 ACCAAGTGTAAGACCAGGACAC 59.896 50.000 0.00 0.00 43.08 3.67
2703 4563 2.094234 GGTGGGATTTAATGCACGCTTT 60.094 45.455 0.00 0.00 0.00 3.51
2734 4594 3.482598 CGCTCAACTGACATAAGAAAGCG 60.483 47.826 0.00 0.00 43.12 4.68
2903 4764 7.993183 AGGTGTCCATCGATGACTATTAATTTT 59.007 33.333 26.86 0.00 0.00 1.82
2940 4801 5.648092 AGTCAGTAAACCATTCTTACATGCC 59.352 40.000 0.00 0.00 32.66 4.40
2963 4824 6.260714 AGCTTTTAATTTCCTGGTTGCAAAAG 59.739 34.615 0.00 1.58 35.73 2.27
2999 4860 2.884639 CTCTCACGTTCCCAAAACCAAT 59.115 45.455 0.00 0.00 0.00 3.16
3078 4939 8.404765 CCATAACATACTAACATGACATGCAAA 58.595 33.333 15.49 0.40 0.00 3.68
3102 4963 9.216117 GATTAACTAGAGAAGCACTTAAAACCA 57.784 33.333 0.00 0.00 0.00 3.67
3138 4999 7.822658 TGTTATGCCACTCACCTTTTTAATAC 58.177 34.615 0.00 0.00 0.00 1.89
3150 5011 2.305635 AGTGACCATGTTATGCCACTCA 59.694 45.455 0.00 0.00 37.80 3.41
3223 5084 7.310664 TCTCGTTCGTAATGTATGAAGAAACT 58.689 34.615 0.00 0.00 34.59 2.66
3240 5101 4.711721 TGCTCAAATCAAAATCTCGTTCG 58.288 39.130 0.00 0.00 0.00 3.95
3271 5132 2.099756 TCTGCACTGTATCCTCATCACG 59.900 50.000 0.00 0.00 0.00 4.35
3644 5505 2.093500 GGATGTATCACTCAGGCACACA 60.093 50.000 0.00 0.00 0.00 3.72
3701 5562 8.224620 AGGTAGGATAGGATGAGCAATAATTT 57.775 34.615 0.00 0.00 0.00 1.82
3719 5580 2.289694 GCAGTCAGCAGAAAAGGTAGGA 60.290 50.000 0.00 0.00 44.79 2.94
3843 5704 7.122055 ACCTGTAGTCTCTTGATAGAACTGAAG 59.878 40.741 0.00 0.00 0.00 3.02
3916 5785 4.122143 TCTCATGTGTGCACGATATTGA 57.878 40.909 13.13 9.56 0.00 2.57
3917 5786 4.863152 TTCTCATGTGTGCACGATATTG 57.137 40.909 13.13 5.61 0.00 1.90
3918 5787 5.178252 GCTATTCTCATGTGTGCACGATATT 59.822 40.000 13.13 0.00 0.00 1.28
3919 5788 4.687948 GCTATTCTCATGTGTGCACGATAT 59.312 41.667 13.13 3.36 0.00 1.63
3920 5789 4.051237 GCTATTCTCATGTGTGCACGATA 58.949 43.478 13.13 0.72 0.00 2.92
3921 5790 2.868583 GCTATTCTCATGTGTGCACGAT 59.131 45.455 13.13 3.68 0.00 3.73
3922 5791 2.094026 AGCTATTCTCATGTGTGCACGA 60.094 45.455 13.13 0.93 0.00 4.35
3923 5792 2.274437 AGCTATTCTCATGTGTGCACG 58.726 47.619 13.13 0.00 0.00 5.34
3924 5793 4.437239 AGTAGCTATTCTCATGTGTGCAC 58.563 43.478 10.75 10.75 0.00 4.57
3949 5818 1.339438 ACTATGTCTGCAGGCAACAGG 60.339 52.381 27.15 16.85 41.41 4.00
3955 5824 7.141363 CCATTAAATAAACTATGTCTGCAGGC 58.859 38.462 12.53 12.53 0.00 4.85
4006 5876 7.094508 TGTTCAAGTTTCAAAAGCAGACATA 57.905 32.000 0.00 0.00 0.00 2.29
4081 5954 2.167693 TGACCCACCGAGTAGCAATTAG 59.832 50.000 0.00 0.00 0.00 1.73
4129 6002 3.445805 TGAATTTTCCAGTTAATCGGCCC 59.554 43.478 0.00 0.00 0.00 5.80
4251 6124 4.440880 CAATCAGAAGCAAAAACAACCCA 58.559 39.130 0.00 0.00 0.00 4.51
4254 6127 5.351458 AGACCAATCAGAAGCAAAAACAAC 58.649 37.500 0.00 0.00 0.00 3.32
4281 6154 7.119699 CACACACAGTATCCAATGTAAATGAGT 59.880 37.037 0.00 0.00 0.00 3.41
4297 6170 0.250684 CCACCATGCCACACACAGTA 60.251 55.000 0.00 0.00 0.00 2.74
4300 6173 2.203466 CCCACCATGCCACACACA 60.203 61.111 0.00 0.00 0.00 3.72
4374 6248 3.944055 AGATCACTGTAGCAAGACGTT 57.056 42.857 0.00 0.00 0.00 3.99
4466 6340 7.067494 AGACAGGTTATTATGAGCAATCCAAAC 59.933 37.037 0.00 0.00 0.00 2.93
4470 6344 6.767902 TCAAGACAGGTTATTATGAGCAATCC 59.232 38.462 0.00 0.00 0.00 3.01
4472 6346 9.499479 CTATCAAGACAGGTTATTATGAGCAAT 57.501 33.333 0.00 0.00 0.00 3.56
4473 6347 8.486210 ACTATCAAGACAGGTTATTATGAGCAA 58.514 33.333 0.00 0.00 0.00 3.91
4686 6563 2.225467 GGCATGGCTGATCCTAAACTC 58.775 52.381 12.86 0.00 35.26 3.01
4787 6664 1.064003 AGTGGGTATGAAGTGTGCCA 58.936 50.000 0.00 0.00 0.00 4.92
4798 6675 4.357325 AGTTGAGAGATGACAGTGGGTAT 58.643 43.478 0.00 0.00 0.00 2.73
4889 6766 1.597027 ACAGTCAAAGCCCGTTCCG 60.597 57.895 0.00 0.00 0.00 4.30
5057 6934 0.387929 TATCGACCAGCATCGGGAAC 59.612 55.000 5.38 0.00 42.50 3.62
5061 6938 0.955178 AGACTATCGACCAGCATCGG 59.045 55.000 5.38 0.00 42.50 4.18
5183 7062 6.419710 CGCGTTCCTATATACAACAAGATGAA 59.580 38.462 0.00 0.00 0.00 2.57
5239 7119 5.230942 AGAGTTAATCTGACACAAAGGTCG 58.769 41.667 0.00 0.00 40.72 4.79
5254 7134 7.453393 TCTTCACCAGACATCAAAGAGTTAAT 58.547 34.615 0.00 0.00 0.00 1.40
5287 7167 6.035542 GCAACCGAAAAGACATCAAAGAAAAA 59.964 34.615 0.00 0.00 0.00 1.94
5305 7185 2.227865 GCCAAATTCTAACAGCAACCGA 59.772 45.455 0.00 0.00 0.00 4.69
5354 7234 0.394352 CGGCAGCCCAGGATTTAAGT 60.394 55.000 5.63 0.00 0.00 2.24
5411 7291 4.922206 TCTTTTGGAGAGCATGGTATGTT 58.078 39.130 0.00 0.00 0.00 2.71
5424 7304 1.602377 ACCGCTTCGTTTCTTTTGGAG 59.398 47.619 0.00 0.00 0.00 3.86
5427 7307 2.529894 CACAACCGCTTCGTTTCTTTTG 59.470 45.455 0.00 0.00 0.00 2.44
5428 7308 2.162809 ACACAACCGCTTCGTTTCTTTT 59.837 40.909 0.00 0.00 0.00 2.27
5437 7317 2.092211 CGTTCAGATACACAACCGCTTC 59.908 50.000 0.00 0.00 0.00 3.86
5438 7318 2.066262 CGTTCAGATACACAACCGCTT 58.934 47.619 0.00 0.00 0.00 4.68
5440 7320 0.719465 CCGTTCAGATACACAACCGC 59.281 55.000 0.00 0.00 0.00 5.68
5442 7322 3.660865 AGAACCGTTCAGATACACAACC 58.339 45.455 13.69 0.00 0.00 3.77
5446 7326 6.147164 TGAAAATGAGAACCGTTCAGATACAC 59.853 38.462 13.69 1.58 0.00 2.90
5539 7419 2.224066 CCCGAGACAGTGATGGATAACC 60.224 54.545 0.00 0.00 0.00 2.85
5544 7424 0.251608 TGACCCGAGACAGTGATGGA 60.252 55.000 0.00 0.00 0.00 3.41
5550 7430 1.546476 GAGATTGTGACCCGAGACAGT 59.454 52.381 0.00 0.00 0.00 3.55
5579 7459 6.758886 AGAAGGTTCTGCAGAAATATAACTCG 59.241 38.462 29.99 0.00 35.89 4.18
5649 7529 4.927978 AGGAAAGATGGATAGAGACACG 57.072 45.455 0.00 0.00 0.00 4.49
5711 7593 2.743664 GGGTCAAAGTTATTACGCGGTT 59.256 45.455 12.47 0.00 0.00 4.44
5855 7738 1.610102 CCTCTCAGTTGCTGTCAAGGG 60.610 57.143 0.00 0.00 31.93 3.95
5902 7825 4.530710 ACTTGGCGATCTTACTTGTACA 57.469 40.909 0.00 0.00 0.00 2.90
5937 7860 6.106003 CACAATTCTAAAATAACCCCAAGCC 58.894 40.000 0.00 0.00 0.00 4.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.