Multiple sequence alignment - TraesCS5D01G466900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G466900 chr5D 100.000 6626 0 0 1 6626 509143134 509136509 0.000000e+00 12237.0
1 TraesCS5D01G466900 chr5D 93.091 275 19 0 6217 6491 509020294 509020568 2.880000e-108 403.0
2 TraesCS5D01G466900 chr5D 94.783 115 6 0 6 120 495191809 495191695 5.280000e-41 180.0
3 TraesCS5D01G466900 chr5D 89.744 78 7 1 6204 6281 509019452 509019528 1.520000e-16 99.0
4 TraesCS5D01G466900 chr5D 93.478 46 3 0 6581 6626 509020630 509020675 1.190000e-07 69.4
5 TraesCS5D01G466900 chr5A 92.755 2664 129 29 944 3595 636419021 636416410 0.000000e+00 3792.0
6 TraesCS5D01G466900 chr5A 93.988 1680 93 6 4951 6626 636415154 636413479 0.000000e+00 2536.0
7 TraesCS5D01G466900 chr5A 96.696 1271 35 5 3623 4892 636416417 636415153 0.000000e+00 2108.0
8 TraesCS5D01G466900 chr5A 85.452 763 68 22 157 899 636419875 636419136 0.000000e+00 754.0
9 TraesCS5D01G466900 chr5A 91.007 278 24 1 6204 6481 636305949 636306225 2.260000e-99 374.0
10 TraesCS5D01G466900 chr5A 80.000 440 42 29 2497 2930 378671845 378672244 3.910000e-72 283.0
11 TraesCS5D01G466900 chr5A 87.273 165 12 2 2 157 387352817 387352981 5.280000e-41 180.0
12 TraesCS5D01G466900 chr5A 86.667 165 14 1 4 160 498007778 498007614 6.830000e-40 176.0
13 TraesCS5D01G466900 chr5A 98.039 51 1 0 892 942 636419112 636419062 9.150000e-14 89.8
14 TraesCS5D01G466900 chr5A 92.857 42 3 0 6585 6626 636306289 636306330 2.000000e-05 62.1
15 TraesCS5D01G466900 chr5B 94.712 2080 74 19 892 2964 639683323 639681273 0.000000e+00 3199.0
16 TraesCS5D01G466900 chr5B 93.258 1676 90 14 4957 6626 639679104 639677446 0.000000e+00 2447.0
17 TraesCS5D01G466900 chr5B 96.276 1262 35 4 3147 4400 639680978 639679721 0.000000e+00 2060.0
18 TraesCS5D01G466900 chr5B 95.161 496 20 3 4398 4892 639679608 639679116 0.000000e+00 780.0
19 TraesCS5D01G466900 chr5B 90.877 285 24 2 6207 6491 639620076 639620358 1.350000e-101 381.0
20 TraesCS5D01G466900 chr5B 95.062 162 8 0 2948 3109 639681138 639680977 8.530000e-64 255.0
21 TraesCS5D01G466900 chr5B 92.157 51 4 0 4920 4970 437570712 437570662 9.220000e-09 73.1
22 TraesCS5D01G466900 chr3A 81.818 748 100 24 2190 2924 328751039 328751763 4.420000e-166 595.0
23 TraesCS5D01G466900 chr3A 80.182 439 45 25 2497 2930 646305126 646305527 2.340000e-74 291.0
24 TraesCS5D01G466900 chr3A 94.631 149 7 1 4745 4892 607058405 607058553 5.170000e-56 230.0
25 TraesCS5D01G466900 chr2D 81.591 440 36 29 2497 2930 465956231 465955831 8.290000e-84 322.0
26 TraesCS5D01G466900 chr2D 90.909 165 7 1 1 157 288224933 288225097 1.450000e-51 215.0
27 TraesCS5D01G466900 chr6B 80.682 440 40 29 2497 2930 301624369 301624769 3.880000e-77 300.0
28 TraesCS5D01G466900 chr6B 88.406 69 5 3 4890 4955 195461926 195461858 5.510000e-11 80.5
29 TraesCS5D01G466900 chr7A 80.455 440 41 28 2497 2930 9404863 9405263 1.810000e-75 294.0
30 TraesCS5D01G466900 chr7A 83.270 263 42 2 6219 6480 89835718 89835457 2.390000e-59 241.0
31 TraesCS5D01G466900 chr6A 85.517 290 32 9 2497 2781 61180868 61181152 1.810000e-75 294.0
32 TraesCS5D01G466900 chr6A 88.764 89 9 1 2842 2930 61181182 61181269 2.530000e-19 108.0
33 TraesCS5D01G466900 chr6A 87.838 74 4 3 4886 4955 15702763 15702835 1.530000e-11 82.4
34 TraesCS5D01G466900 chr7B 86.122 245 24 10 2542 2781 609149409 609149170 8.530000e-64 255.0
35 TraesCS5D01G466900 chr7B 82.890 263 43 2 6219 6480 37091336 37091075 1.110000e-57 235.0
36 TraesCS5D01G466900 chr7B 88.690 168 11 1 1 160 579791215 579791048 1.460000e-46 198.0
37 TraesCS5D01G466900 chr7B 87.879 165 11 2 2 157 328553207 328553371 1.130000e-42 185.0
38 TraesCS5D01G466900 chr7B 87.324 71 3 1 4889 4953 713303717 713303787 7.120000e-10 76.8
39 TraesCS5D01G466900 chr7D 83.270 263 42 2 6219 6480 88149857 88149596 2.390000e-59 241.0
40 TraesCS5D01G466900 chr7D 93.878 147 8 1 4749 4894 525768131 525767985 3.110000e-53 220.0
41 TraesCS5D01G466900 chr7D 78.400 125 14 9 4866 4981 459970885 459971005 1.190000e-07 69.4
42 TraesCS5D01G466900 chr4B 95.070 142 7 0 4751 4892 103804479 103804620 2.400000e-54 224.0
43 TraesCS5D01G466900 chr4B 90.000 170 16 1 4751 4919 489376335 489376166 1.120000e-52 219.0
44 TraesCS5D01G466900 chr4B 90.769 65 6 0 4891 4955 124049311 124049247 3.290000e-13 87.9
45 TraesCS5D01G466900 chr4B 91.304 46 3 1 4920 4965 479678656 479678700 2.000000e-05 62.1
46 TraesCS5D01G466900 chr4D 94.406 143 7 1 4751 4892 465125471 465125329 1.120000e-52 219.0
47 TraesCS5D01G466900 chr4D 90.798 163 13 2 4751 4911 238640023 238640185 4.020000e-52 217.0
48 TraesCS5D01G466900 chrUn 89.634 164 14 3 4750 4910 87983401 87983238 8.710000e-49 206.0
49 TraesCS5D01G466900 chr1B 92.537 134 10 0 1 134 152452865 152452998 6.780000e-45 193.0
50 TraesCS5D01G466900 chr1B 92.222 90 5 2 2842 2930 512460495 512460407 6.980000e-25 126.0
51 TraesCS5D01G466900 chr1B 90.769 65 4 1 4890 4952 586281752 586281816 1.180000e-12 86.1
52 TraesCS5D01G466900 chr4A 94.118 119 7 0 2 120 672193340 672193458 1.470000e-41 182.0
53 TraesCS5D01G466900 chr4A 93.277 119 8 0 2 120 672287028 672287146 6.830000e-40 176.0
54 TraesCS5D01G466900 chr2A 91.176 68 4 2 4890 4956 679966961 679966895 2.540000e-14 91.6
55 TraesCS5D01G466900 chr1D 90.000 70 3 1 4891 4956 386424749 386424680 3.290000e-13 87.9
56 TraesCS5D01G466900 chr6D 87.500 72 4 3 4886 4953 14725248 14725178 1.980000e-10 78.7
57 TraesCS5D01G466900 chr1A 88.889 63 7 0 4892 4954 1346768 1346830 1.980000e-10 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G466900 chr5D 509136509 509143134 6625 True 12237.00 12237 100.0000 1 6626 1 chr5D.!!$R2 6625
1 TraesCS5D01G466900 chr5A 636413479 636419875 6396 True 1855.96 3792 93.3860 157 6626 5 chr5A.!!$R2 6469
2 TraesCS5D01G466900 chr5B 639677446 639683323 5877 True 1748.20 3199 94.8938 892 6626 5 chr5B.!!$R2 5734
3 TraesCS5D01G466900 chr3A 328751039 328751763 724 False 595.00 595 81.8180 2190 2924 1 chr3A.!!$F1 734

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
426 432 0.036732 TCTACTTGGCAGCCTTGTGG 59.963 55.0 14.15 13.02 0.00 4.17 F
1321 1436 0.036732 CCTGCTGCCCTGTTCAGTTA 59.963 55.0 0.00 0.00 34.21 2.24 F
3309 3600 0.249120 GGTGGCCAAATTAACCTGCC 59.751 55.0 7.24 0.00 42.49 4.85 F
3617 3950 0.099968 GTGGTGCGACGCTGTCTATA 59.900 55.0 22.08 0.00 0.00 1.31 F
4118 4452 0.743701 CTCACTCCTGCACTGATGGC 60.744 60.0 0.00 0.00 0.00 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1333 1448 0.322456 CGCCAAGTGAATTCTCCCCA 60.322 55.000 7.05 0.00 0.00 4.96 R
3316 3607 0.984995 AGTTGGGTAGCCAGGAGTTC 59.015 55.000 14.38 2.58 0.00 3.01 R
4118 4452 1.268083 ACATCGAGCGAGTCATGTACG 60.268 52.381 0.00 0.00 30.02 3.67 R
4894 5344 1.956477 CGCTTATTTTGGGATGGAGGG 59.044 52.381 0.00 0.00 0.00 4.30 R
6062 6525 0.382515 TCAAACCAAAACCGGCTTCG 59.617 50.000 0.00 0.00 0.00 3.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 4.435436 CAGTCGCTAGCGCCACCA 62.435 66.667 31.82 12.08 39.59 4.17
23 24 4.436998 AGTCGCTAGCGCCACCAC 62.437 66.667 31.82 23.07 39.59 4.16
27 28 4.129737 GCTAGCGCCACCACGAGA 62.130 66.667 2.29 0.00 34.06 4.04
28 29 2.571757 CTAGCGCCACCACGAGAA 59.428 61.111 2.29 0.00 34.06 2.87
29 30 1.517257 CTAGCGCCACCACGAGAAG 60.517 63.158 2.29 0.00 34.06 2.85
30 31 2.890847 CTAGCGCCACCACGAGAAGG 62.891 65.000 2.29 0.00 34.06 3.46
31 32 4.373116 GCGCCACCACGAGAAGGA 62.373 66.667 0.00 0.00 34.06 3.36
32 33 2.579201 CGCCACCACGAGAAGGAT 59.421 61.111 0.00 0.00 34.06 3.24
33 34 1.519455 CGCCACCACGAGAAGGATC 60.519 63.158 0.00 0.00 34.06 3.36
34 35 1.153349 GCCACCACGAGAAGGATCC 60.153 63.158 2.48 2.48 0.00 3.36
35 36 1.141881 CCACCACGAGAAGGATCCG 59.858 63.158 5.98 0.00 0.00 4.18
36 37 1.519455 CACCACGAGAAGGATCCGC 60.519 63.158 5.98 2.53 0.00 5.54
37 38 2.107141 CCACGAGAAGGATCCGCC 59.893 66.667 5.98 1.93 0.00 6.13
38 39 2.107141 CACGAGAAGGATCCGCCC 59.893 66.667 5.98 0.00 37.37 6.13
39 40 3.155167 ACGAGAAGGATCCGCCCC 61.155 66.667 5.98 0.00 37.37 5.80
40 41 3.930012 CGAGAAGGATCCGCCCCC 61.930 72.222 5.98 0.00 37.37 5.40
41 42 3.930012 GAGAAGGATCCGCCCCCG 61.930 72.222 5.98 0.00 37.37 5.73
125 126 4.326227 AGCACCGGTGGGGGAGTA 62.326 66.667 34.58 0.00 40.10 2.59
126 127 4.091939 GCACCGGTGGGGGAGTAC 62.092 72.222 34.58 12.61 40.10 2.73
127 128 2.284405 CACCGGTGGGGGAGTACT 60.284 66.667 27.57 0.00 40.10 2.73
128 129 1.000739 CACCGGTGGGGGAGTACTA 59.999 63.158 27.57 0.00 40.10 1.82
129 130 1.041447 CACCGGTGGGGGAGTACTAG 61.041 65.000 27.57 0.00 40.10 2.57
130 131 1.457079 CCGGTGGGGGAGTACTAGG 60.457 68.421 0.00 0.00 0.00 3.02
131 132 1.309006 CGGTGGGGGAGTACTAGGT 59.691 63.158 0.00 0.00 0.00 3.08
132 133 1.041447 CGGTGGGGGAGTACTAGGTG 61.041 65.000 0.00 0.00 0.00 4.00
133 134 0.690077 GGTGGGGGAGTACTAGGTGG 60.690 65.000 0.00 0.00 0.00 4.61
134 135 0.042281 GTGGGGGAGTACTAGGTGGT 59.958 60.000 0.00 0.00 0.00 4.16
135 136 0.794934 TGGGGGAGTACTAGGTGGTT 59.205 55.000 0.00 0.00 0.00 3.67
136 137 1.201424 GGGGGAGTACTAGGTGGTTG 58.799 60.000 0.00 0.00 0.00 3.77
137 138 0.540454 GGGGAGTACTAGGTGGTTGC 59.460 60.000 0.00 0.00 0.00 4.17
138 139 0.175073 GGGAGTACTAGGTGGTTGCG 59.825 60.000 0.00 0.00 0.00 4.85
139 140 0.459759 GGAGTACTAGGTGGTTGCGC 60.460 60.000 0.00 0.00 0.00 6.09
140 141 0.459759 GAGTACTAGGTGGTTGCGCC 60.460 60.000 4.18 0.00 37.90 6.53
141 142 1.449070 GTACTAGGTGGTTGCGCCC 60.449 63.158 4.18 0.00 36.04 6.13
142 143 2.662070 TACTAGGTGGTTGCGCCCC 61.662 63.158 4.18 5.44 36.04 5.80
143 144 4.796495 CTAGGTGGTTGCGCCCCC 62.796 72.222 4.18 5.00 36.04 5.40
170 171 3.962063 TCGCCTGGGTAGTATTGTCATTA 59.038 43.478 0.00 0.00 0.00 1.90
225 227 4.385825 TCTCACATTTTAAGGCGTGACTT 58.614 39.130 0.00 0.00 34.78 3.01
241 243 4.553351 CGTGACTTATACGCGTCATAGGAA 60.553 45.833 18.63 0.00 41.63 3.36
261 263 6.963083 GGAATAGAGAGCTAACTAGTCCAA 57.037 41.667 26.72 2.18 46.44 3.53
263 265 6.380095 AATAGAGAGCTAACTAGTCCAACG 57.620 41.667 0.00 0.00 0.00 4.10
266 268 5.251764 AGAGAGCTAACTAGTCCAACGTAA 58.748 41.667 0.00 0.00 0.00 3.18
267 269 5.887035 AGAGAGCTAACTAGTCCAACGTAAT 59.113 40.000 0.00 0.00 0.00 1.89
293 295 6.452494 TCTTCCTCAACTAATAGTCTTCCG 57.548 41.667 0.00 0.00 0.00 4.30
296 298 6.205101 TCCTCAACTAATAGTCTTCCGTTC 57.795 41.667 0.00 0.00 0.00 3.95
300 302 6.931838 TCAACTAATAGTCTTCCGTTCACAT 58.068 36.000 0.00 0.00 0.00 3.21
301 303 7.033791 TCAACTAATAGTCTTCCGTTCACATC 58.966 38.462 0.00 0.00 0.00 3.06
304 306 5.407407 AATAGTCTTCCGTTCACATCTGT 57.593 39.130 0.00 0.00 0.00 3.41
307 309 1.967779 TCTTCCGTTCACATCTGTCCA 59.032 47.619 0.00 0.00 0.00 4.02
311 313 1.066215 CCGTTCACATCTGTCCATCCA 60.066 52.381 0.00 0.00 0.00 3.41
317 319 2.027837 CACATCTGTCCATCCACTCACA 60.028 50.000 0.00 0.00 0.00 3.58
357 359 5.116882 GTGTGTTCTCCTACTGTGTTTTCT 58.883 41.667 0.00 0.00 0.00 2.52
358 360 5.234543 GTGTGTTCTCCTACTGTGTTTTCTC 59.765 44.000 0.00 0.00 0.00 2.87
359 361 5.128827 TGTGTTCTCCTACTGTGTTTTCTCT 59.871 40.000 0.00 0.00 0.00 3.10
360 362 5.692654 GTGTTCTCCTACTGTGTTTTCTCTC 59.307 44.000 0.00 0.00 0.00 3.20
361 363 5.598830 TGTTCTCCTACTGTGTTTTCTCTCT 59.401 40.000 0.00 0.00 0.00 3.10
362 364 6.776116 TGTTCTCCTACTGTGTTTTCTCTCTA 59.224 38.462 0.00 0.00 0.00 2.43
363 365 7.287005 TGTTCTCCTACTGTGTTTTCTCTCTAA 59.713 37.037 0.00 0.00 0.00 2.10
365 367 8.423906 TCTCCTACTGTGTTTTCTCTCTAATT 57.576 34.615 0.00 0.00 0.00 1.40
366 368 8.871125 TCTCCTACTGTGTTTTCTCTCTAATTT 58.129 33.333 0.00 0.00 0.00 1.82
372 374 9.614792 ACTGTGTTTTCTCTCTAATTTAACACT 57.385 29.630 14.02 0.00 42.45 3.55
390 396 3.650942 ACACTATCCTTTTGTCCACTCCA 59.349 43.478 0.00 0.00 0.00 3.86
395 401 3.526899 TCCTTTTGTCCACTCCATCCTA 58.473 45.455 0.00 0.00 0.00 2.94
416 422 4.708726 ATGTGCTTGAATTCTACTTGGC 57.291 40.909 7.05 0.00 0.00 4.52
417 423 3.485394 TGTGCTTGAATTCTACTTGGCA 58.515 40.909 7.05 2.42 0.00 4.92
418 424 3.503363 TGTGCTTGAATTCTACTTGGCAG 59.497 43.478 7.05 0.00 0.00 4.85
420 426 2.159324 GCTTGAATTCTACTTGGCAGCC 60.159 50.000 3.66 3.66 0.00 4.85
421 427 3.350833 CTTGAATTCTACTTGGCAGCCT 58.649 45.455 14.15 0.00 0.00 4.58
422 428 3.439857 TGAATTCTACTTGGCAGCCTT 57.560 42.857 14.15 0.00 0.00 4.35
423 429 3.084039 TGAATTCTACTTGGCAGCCTTG 58.916 45.455 14.15 7.86 0.00 3.61
424 430 2.887151 ATTCTACTTGGCAGCCTTGT 57.113 45.000 14.15 13.56 0.00 3.16
425 431 1.896220 TTCTACTTGGCAGCCTTGTG 58.104 50.000 14.15 2.54 0.00 3.33
426 432 0.036732 TCTACTTGGCAGCCTTGTGG 59.963 55.000 14.15 13.02 0.00 4.17
427 433 0.962356 CTACTTGGCAGCCTTGTGGG 60.962 60.000 14.15 5.59 38.36 4.61
428 434 1.715019 TACTTGGCAGCCTTGTGGGT 61.715 55.000 14.15 5.05 46.37 4.51
429 435 1.074775 CTTGGCAGCCTTGTGGGTA 59.925 57.895 14.15 0.00 43.07 3.69
430 436 0.323725 CTTGGCAGCCTTGTGGGTAT 60.324 55.000 14.15 0.00 43.07 2.73
431 437 0.995803 TTGGCAGCCTTGTGGGTATA 59.004 50.000 14.15 0.00 43.07 1.47
432 438 0.546122 TGGCAGCCTTGTGGGTATAG 59.454 55.000 14.15 0.00 43.07 1.31
433 439 0.179018 GGCAGCCTTGTGGGTATAGG 60.179 60.000 3.29 0.00 43.07 2.57
442 448 6.681729 CCTTGTGGGTATAGGCTTCTAATA 57.318 41.667 0.00 0.00 0.00 0.98
450 456 1.049402 AGGCTTCTAATAGGGGCGTC 58.951 55.000 0.00 0.00 0.00 5.19
455 461 0.748450 TCTAATAGGGGCGTCGGTTG 59.252 55.000 0.00 0.00 0.00 3.77
477 483 4.137543 GCCTAATCAACCACCCATCTAAG 58.862 47.826 0.00 0.00 0.00 2.18
503 509 1.279271 AGGGTGTATGTTGTCCTGCTC 59.721 52.381 0.00 0.00 0.00 4.26
504 510 1.279271 GGGTGTATGTTGTCCTGCTCT 59.721 52.381 0.00 0.00 0.00 4.09
554 562 3.183754 TGTCGCCAATCACTTATACACG 58.816 45.455 0.00 0.00 0.00 4.49
560 568 3.131396 CAATCACTTATACACGCCCCTC 58.869 50.000 0.00 0.00 0.00 4.30
561 569 1.117150 TCACTTATACACGCCCCTCC 58.883 55.000 0.00 0.00 0.00 4.30
565 573 1.727511 TTATACACGCCCCTCCGTCG 61.728 60.000 0.00 0.00 39.83 5.12
566 574 2.891941 TATACACGCCCCTCCGTCGT 62.892 60.000 0.00 0.00 39.83 4.34
580 588 0.179161 CGTCGTCGCTTCTTCTCCAT 60.179 55.000 0.00 0.00 0.00 3.41
638 646 3.502356 ACCGTCCTCTCTTCTTCTTCTT 58.498 45.455 0.00 0.00 0.00 2.52
639 647 3.508402 ACCGTCCTCTCTTCTTCTTCTTC 59.492 47.826 0.00 0.00 0.00 2.87
640 648 3.761752 CCGTCCTCTCTTCTTCTTCTTCT 59.238 47.826 0.00 0.00 0.00 2.85
641 649 4.219725 CCGTCCTCTCTTCTTCTTCTTCTT 59.780 45.833 0.00 0.00 0.00 2.52
642 650 5.399013 CGTCCTCTCTTCTTCTTCTTCTTC 58.601 45.833 0.00 0.00 0.00 2.87
643 651 5.183140 CGTCCTCTCTTCTTCTTCTTCTTCT 59.817 44.000 0.00 0.00 0.00 2.85
644 652 6.294508 CGTCCTCTCTTCTTCTTCTTCTTCTT 60.295 42.308 0.00 0.00 0.00 2.52
645 653 7.090808 GTCCTCTCTTCTTCTTCTTCTTCTTC 58.909 42.308 0.00 0.00 0.00 2.87
646 654 7.010160 TCCTCTCTTCTTCTTCTTCTTCTTCT 58.990 38.462 0.00 0.00 0.00 2.85
647 655 7.508977 TCCTCTCTTCTTCTTCTTCTTCTTCTT 59.491 37.037 0.00 0.00 0.00 2.52
648 656 7.814587 CCTCTCTTCTTCTTCTTCTTCTTCTTC 59.185 40.741 0.00 0.00 0.00 2.87
649 657 8.477419 TCTCTTCTTCTTCTTCTTCTTCTTCT 57.523 34.615 0.00 0.00 0.00 2.85
650 658 8.923270 TCTCTTCTTCTTCTTCTTCTTCTTCTT 58.077 33.333 0.00 0.00 0.00 2.52
651 659 9.196552 CTCTTCTTCTTCTTCTTCTTCTTCTTC 57.803 37.037 0.00 0.00 0.00 2.87
652 660 8.923270 TCTTCTTCTTCTTCTTCTTCTTCTTCT 58.077 33.333 0.00 0.00 0.00 2.85
653 661 9.546428 CTTCTTCTTCTTCTTCTTCTTCTTCTT 57.454 33.333 0.00 0.00 0.00 2.52
654 662 9.541143 TTCTTCTTCTTCTTCTTCTTCTTCTTC 57.459 33.333 0.00 0.00 0.00 2.87
655 663 8.923270 TCTTCTTCTTCTTCTTCTTCTTCTTCT 58.077 33.333 0.00 0.00 0.00 2.85
656 664 9.546428 CTTCTTCTTCTTCTTCTTCTTCTTCTT 57.454 33.333 0.00 0.00 0.00 2.52
657 665 9.541143 TTCTTCTTCTTCTTCTTCTTCTTCTTC 57.459 33.333 0.00 0.00 0.00 2.87
658 666 8.923270 TCTTCTTCTTCTTCTTCTTCTTCTTCT 58.077 33.333 0.00 0.00 0.00 2.85
659 667 9.546428 CTTCTTCTTCTTCTTCTTCTTCTTCTT 57.454 33.333 0.00 0.00 0.00 2.52
660 668 9.541143 TTCTTCTTCTTCTTCTTCTTCTTCTTC 57.459 33.333 0.00 0.00 0.00 2.87
661 669 8.923270 TCTTCTTCTTCTTCTTCTTCTTCTTCT 58.077 33.333 0.00 0.00 0.00 2.85
669 677 4.238514 TCTTCTTCTTCTTCTAGTTGCGC 58.761 43.478 0.00 0.00 0.00 6.09
670 678 2.960819 TCTTCTTCTTCTAGTTGCGCC 58.039 47.619 4.18 0.00 0.00 6.53
676 684 1.134699 TCTTCTAGTTGCGCCCTCATG 60.135 52.381 4.18 0.00 0.00 3.07
677 685 0.613260 TTCTAGTTGCGCCCTCATGT 59.387 50.000 4.18 0.00 0.00 3.21
681 689 1.376683 GTTGCGCCCTCATGTGGTA 60.377 57.895 12.65 0.00 0.00 3.25
682 690 1.376683 TTGCGCCCTCATGTGGTAC 60.377 57.895 12.65 3.87 0.00 3.34
687 729 2.755650 CGCCCTCATGTGGTACTATTC 58.244 52.381 12.65 0.00 0.00 1.75
691 733 4.766375 CCCTCATGTGGTACTATTCGTTT 58.234 43.478 12.65 0.00 0.00 3.60
703 745 7.977853 TGGTACTATTCGTTTCATAAGACCTTC 59.022 37.037 0.00 0.00 0.00 3.46
704 746 7.437565 GGTACTATTCGTTTCATAAGACCTTCC 59.562 40.741 0.00 0.00 0.00 3.46
737 779 9.016438 TGTTTGGTAGGTATTTCTTCAATTACC 57.984 33.333 0.00 0.00 38.21 2.85
864 906 5.827568 AACTGAAATGTAAATGCAAAGCG 57.172 34.783 0.00 0.00 0.00 4.68
883 928 1.373570 GGATCCACCGCAAAAGAGAG 58.626 55.000 6.95 0.00 0.00 3.20
1023 1138 3.153270 GATCCTCCGGCGGAACCTC 62.153 68.421 30.59 20.67 36.49 3.85
1041 1156 4.436998 CTCGAAGCTTCCCGCCGT 62.437 66.667 20.62 0.00 40.39 5.68
1293 1408 0.679960 TCTGCTAGGCTCGTGCACTA 60.680 55.000 16.19 2.43 41.91 2.74
1298 1413 3.824443 TGCTAGGCTCGTGCACTATTATA 59.176 43.478 16.19 1.77 41.91 0.98
1321 1436 0.036732 CCTGCTGCCCTGTTCAGTTA 59.963 55.000 0.00 0.00 34.21 2.24
1323 1438 1.002430 CTGCTGCCCTGTTCAGTTAGA 59.998 52.381 0.00 0.00 34.21 2.10
1333 1448 5.048713 CCCTGTTCAGTTAGAAGCGAATTTT 60.049 40.000 0.00 0.00 36.78 1.82
1334 1449 5.853282 CCTGTTCAGTTAGAAGCGAATTTTG 59.147 40.000 0.00 0.00 36.78 2.44
1345 1460 3.430453 AGCGAATTTTGGGGAGAATTCA 58.570 40.909 8.44 0.00 40.55 2.57
1352 1467 0.322456 TGGGGAGAATTCACTTGGCG 60.322 55.000 8.44 0.00 0.00 5.69
1408 1523 7.013655 GTGGTTCCATTGATATGTTCATTAGCT 59.986 37.037 0.00 0.00 33.34 3.32
1437 1552 7.028962 GTGCAAATGTCATGTAATGCTTCTTA 58.971 34.615 11.88 0.00 46.21 2.10
1457 1573 9.476761 CTTCTTACAATTTTTGTGTTTCTTTGC 57.523 29.630 3.22 0.00 45.03 3.68
1488 1604 8.950403 AACGCTCAAATTTTATGTTCTACTTC 57.050 30.769 0.00 0.00 0.00 3.01
1531 1647 1.312371 AATTCCCCATGCGACCAACG 61.312 55.000 0.00 0.00 45.66 4.10
1560 1676 1.239296 CCACTGGTGCAGGATGTGTG 61.239 60.000 0.00 0.00 39.31 3.82
1640 1756 4.277672 GCTTGACATGGATGCTACATTCAT 59.722 41.667 0.00 0.00 0.00 2.57
1725 1850 9.301153 CAAAAATAACTGCTAAACAACTTCTGT 57.699 29.630 0.00 0.00 41.27 3.41
2032 2157 4.791411 GCGTTTAACTGCTTTTCATGTCCA 60.791 41.667 0.00 0.00 0.00 4.02
2036 2161 3.308438 ACTGCTTTTCATGTCCAATGC 57.692 42.857 0.00 0.00 0.00 3.56
2059 2184 4.104738 CCCCTCCATATTTCCTCAAGCTTA 59.895 45.833 0.00 0.00 0.00 3.09
2076 2201 8.232913 TCAAGCTTAATGGTTTATATTCACCC 57.767 34.615 0.00 0.00 33.63 4.61
2364 2496 9.262358 CATCTTAGAGTACCTATTTTAGCAACC 57.738 37.037 0.00 0.00 0.00 3.77
2382 2514 1.210931 CGCAACAGGACATGCCAAG 59.789 57.895 8.58 3.82 39.39 3.61
2383 2515 1.518056 CGCAACAGGACATGCCAAGT 61.518 55.000 8.58 4.34 39.39 3.16
2384 2516 0.675633 GCAACAGGACATGCCAAGTT 59.324 50.000 8.58 9.12 40.02 2.66
2385 2517 2.427232 CAACAGGACATGCCAAGTTG 57.573 50.000 19.46 19.46 43.60 3.16
2386 2518 0.675633 AACAGGACATGCCAAGTTGC 59.324 50.000 8.58 0.00 40.02 4.17
2387 2519 1.181098 ACAGGACATGCCAAGTTGCC 61.181 55.000 8.58 0.00 40.02 4.52
2388 2520 1.153524 AGGACATGCCAAGTTGCCA 59.846 52.632 8.58 0.00 40.02 4.92
2389 2521 0.469705 AGGACATGCCAAGTTGCCAA 60.470 50.000 8.58 0.00 40.02 4.52
2499 2632 8.641498 ATGAATAGTTTGATTCACTGTTTCCT 57.359 30.769 1.14 0.00 46.00 3.36
2737 2871 2.161808 CGAGGCTCTTGAGAGTACGAAA 59.838 50.000 13.50 0.00 43.85 3.46
2750 2884 5.270794 AGAGTACGAAAACTCCTTCCCTAT 58.729 41.667 11.76 0.00 45.86 2.57
2778 2915 9.178758 CAAAAGGCATTCTAGGACTAAAGTTAT 57.821 33.333 0.00 0.00 0.00 1.89
2781 2918 7.672240 AGGCATTCTAGGACTAAAGTTATAGC 58.328 38.462 0.00 0.00 0.00 2.97
2782 2919 6.874664 GGCATTCTAGGACTAAAGTTATAGCC 59.125 42.308 0.00 0.00 0.00 3.93
2783 2920 7.256368 GGCATTCTAGGACTAAAGTTATAGCCT 60.256 40.741 0.00 0.00 35.24 4.58
2784 2921 8.151596 GCATTCTAGGACTAAAGTTATAGCCTT 58.848 37.037 0.00 0.00 33.94 4.35
3001 3292 1.679032 GCCGCTCTGAAGGTACCAAAT 60.679 52.381 15.94 0.00 0.00 2.32
3007 3298 5.163854 CGCTCTGAAGGTACCAAATAAAGTG 60.164 44.000 15.94 6.99 0.00 3.16
3039 3330 9.459640 GATGACCATCTACAATCAATTCAAATG 57.540 33.333 2.91 0.00 35.04 2.32
3309 3600 0.249120 GGTGGCCAAATTAACCTGCC 59.751 55.000 7.24 0.00 42.49 4.85
3316 3607 3.574614 CCAAATTAACCTGCCTTTGACG 58.425 45.455 0.00 0.00 31.76 4.35
3504 3802 7.889873 TTCAGGAGTTTTTGTTGAGGATAAA 57.110 32.000 0.00 0.00 0.00 1.40
3562 3860 5.409826 GTGGCACTTATGGAGTATGCTTATC 59.590 44.000 11.13 0.00 36.65 1.75
3595 3928 9.695526 TTTTCTTGTCATTCCTTCATTAACATG 57.304 29.630 0.00 0.00 0.00 3.21
3596 3929 6.855836 TCTTGTCATTCCTTCATTAACATGC 58.144 36.000 0.00 0.00 0.00 4.06
3597 3930 6.660521 TCTTGTCATTCCTTCATTAACATGCT 59.339 34.615 0.00 0.00 0.00 3.79
3598 3931 6.198650 TGTCATTCCTTCATTAACATGCTG 57.801 37.500 0.00 0.00 0.00 4.41
3599 3932 5.711506 TGTCATTCCTTCATTAACATGCTGT 59.288 36.000 0.00 0.00 0.00 4.40
3600 3933 6.032094 GTCATTCCTTCATTAACATGCTGTG 58.968 40.000 0.00 0.00 0.00 3.66
3601 3934 5.125900 TCATTCCTTCATTAACATGCTGTGG 59.874 40.000 0.00 0.00 0.00 4.17
3602 3935 4.032960 TCCTTCATTAACATGCTGTGGT 57.967 40.909 0.00 0.00 0.00 4.16
3603 3936 3.758023 TCCTTCATTAACATGCTGTGGTG 59.242 43.478 0.00 0.00 0.00 4.17
3604 3937 3.504863 CTTCATTAACATGCTGTGGTGC 58.495 45.455 0.00 0.00 0.00 5.01
3605 3938 1.468127 TCATTAACATGCTGTGGTGCG 59.532 47.619 0.00 0.00 35.36 5.34
3606 3939 1.468127 CATTAACATGCTGTGGTGCGA 59.532 47.619 0.00 0.00 35.36 5.10
3607 3940 0.871722 TTAACATGCTGTGGTGCGAC 59.128 50.000 0.00 0.00 35.36 5.19
3608 3941 1.288419 TAACATGCTGTGGTGCGACG 61.288 55.000 0.00 0.00 35.36 5.12
3609 3942 4.450122 CATGCTGTGGTGCGACGC 62.450 66.667 14.19 14.19 35.36 5.19
3610 3943 4.687215 ATGCTGTGGTGCGACGCT 62.687 61.111 22.08 0.00 35.36 5.07
3613 3946 3.406361 CTGTGGTGCGACGCTGTC 61.406 66.667 22.08 11.09 0.00 3.51
3614 3947 3.848347 CTGTGGTGCGACGCTGTCT 62.848 63.158 22.08 0.00 0.00 3.41
3615 3948 2.257371 GTGGTGCGACGCTGTCTA 59.743 61.111 22.08 6.79 0.00 2.59
3616 3949 1.153823 GTGGTGCGACGCTGTCTAT 60.154 57.895 22.08 0.00 0.00 1.98
3617 3950 0.099968 GTGGTGCGACGCTGTCTATA 59.900 55.000 22.08 0.00 0.00 1.31
3618 3951 1.029681 TGGTGCGACGCTGTCTATAT 58.970 50.000 22.08 0.00 0.00 0.86
3619 3952 1.407618 TGGTGCGACGCTGTCTATATT 59.592 47.619 22.08 0.00 0.00 1.28
3620 3953 2.159156 TGGTGCGACGCTGTCTATATTT 60.159 45.455 22.08 0.00 0.00 1.40
3621 3954 2.864343 GGTGCGACGCTGTCTATATTTT 59.136 45.455 22.08 0.00 0.00 1.82
3622 3955 4.046462 GGTGCGACGCTGTCTATATTTTA 58.954 43.478 22.08 0.00 0.00 1.52
3623 3956 4.684703 GGTGCGACGCTGTCTATATTTTAT 59.315 41.667 22.08 0.00 0.00 1.40
3624 3957 5.176958 GGTGCGACGCTGTCTATATTTTATT 59.823 40.000 22.08 0.00 0.00 1.40
3625 3958 6.364165 GGTGCGACGCTGTCTATATTTTATTA 59.636 38.462 22.08 0.00 0.00 0.98
3626 3959 7.095940 GGTGCGACGCTGTCTATATTTTATTAA 60.096 37.037 22.08 0.00 0.00 1.40
3627 3960 8.433126 GTGCGACGCTGTCTATATTTTATTAAT 58.567 33.333 22.08 0.00 0.00 1.40
3628 3961 9.628746 TGCGACGCTGTCTATATTTTATTAATA 57.371 29.630 22.08 0.00 0.00 0.98
4116 4450 1.082679 CGCTCACTCCTGCACTGATG 61.083 60.000 0.00 0.00 0.00 3.07
4118 4452 0.743701 CTCACTCCTGCACTGATGGC 60.744 60.000 0.00 0.00 0.00 4.40
4477 4926 4.799564 TGATGAGTTTTTGGGTTATGCC 57.200 40.909 0.00 0.00 0.00 4.40
4480 4929 5.306678 TGATGAGTTTTTGGGTTATGCCTTT 59.693 36.000 0.00 0.00 37.43 3.11
4760 5210 5.836024 AAGTTAATTGTGTACTCCCTCCA 57.164 39.130 0.00 0.00 0.00 3.86
4890 5340 9.057089 CCGTAATGAATCTCTAAAAAGGCTTAT 57.943 33.333 0.00 0.00 0.00 1.73
4895 5345 9.785982 ATGAATCTCTAAAAAGGCTTATACTCC 57.214 33.333 0.00 0.00 0.00 3.85
4896 5346 8.211629 TGAATCTCTAAAAAGGCTTATACTCCC 58.788 37.037 0.00 0.00 0.00 4.30
4897 5347 7.939376 ATCTCTAAAAAGGCTTATACTCCCT 57.061 36.000 0.00 0.00 0.00 4.20
4898 5348 7.362802 TCTCTAAAAAGGCTTATACTCCCTC 57.637 40.000 0.00 0.00 0.00 4.30
4899 5349 6.326843 TCTCTAAAAAGGCTTATACTCCCTCC 59.673 42.308 0.00 0.00 0.00 4.30
4900 5350 5.968167 TCTAAAAAGGCTTATACTCCCTCCA 59.032 40.000 0.00 0.00 0.00 3.86
4901 5351 5.734031 AAAAAGGCTTATACTCCCTCCAT 57.266 39.130 0.00 0.00 0.00 3.41
4902 5352 4.984146 AAAGGCTTATACTCCCTCCATC 57.016 45.455 0.00 0.00 0.00 3.51
4903 5353 2.909217 AGGCTTATACTCCCTCCATCC 58.091 52.381 0.00 0.00 0.00 3.51
4904 5354 1.909986 GGCTTATACTCCCTCCATCCC 59.090 57.143 0.00 0.00 0.00 3.85
4905 5355 2.621070 GCTTATACTCCCTCCATCCCA 58.379 52.381 0.00 0.00 0.00 4.37
4906 5356 2.979678 GCTTATACTCCCTCCATCCCAA 59.020 50.000 0.00 0.00 0.00 4.12
4907 5357 3.394606 GCTTATACTCCCTCCATCCCAAA 59.605 47.826 0.00 0.00 0.00 3.28
4908 5358 4.141251 GCTTATACTCCCTCCATCCCAAAA 60.141 45.833 0.00 0.00 0.00 2.44
4909 5359 5.458215 GCTTATACTCCCTCCATCCCAAAAT 60.458 44.000 0.00 0.00 0.00 1.82
4910 5360 6.240176 GCTTATACTCCCTCCATCCCAAAATA 60.240 42.308 0.00 0.00 0.00 1.40
4911 5361 7.694293 GCTTATACTCCCTCCATCCCAAAATAA 60.694 40.741 0.00 0.00 0.00 1.40
4912 5362 4.526438 ACTCCCTCCATCCCAAAATAAG 57.474 45.455 0.00 0.00 0.00 1.73
4913 5363 3.225940 CTCCCTCCATCCCAAAATAAGC 58.774 50.000 0.00 0.00 0.00 3.09
4914 5364 1.956477 CCCTCCATCCCAAAATAAGCG 59.044 52.381 0.00 0.00 0.00 4.68
4915 5365 2.654863 CCTCCATCCCAAAATAAGCGT 58.345 47.619 0.00 0.00 0.00 5.07
4916 5366 2.618709 CCTCCATCCCAAAATAAGCGTC 59.381 50.000 0.00 0.00 0.00 5.19
4917 5367 3.545703 CTCCATCCCAAAATAAGCGTCT 58.454 45.455 0.00 0.00 0.00 4.18
4918 5368 3.541632 TCCATCCCAAAATAAGCGTCTC 58.458 45.455 0.00 0.00 0.00 3.36
4919 5369 3.054728 TCCATCCCAAAATAAGCGTCTCA 60.055 43.478 0.00 0.00 0.00 3.27
4920 5370 3.313526 CCATCCCAAAATAAGCGTCTCAG 59.686 47.826 0.00 0.00 0.00 3.35
4921 5371 3.695830 TCCCAAAATAAGCGTCTCAGT 57.304 42.857 0.00 0.00 0.00 3.41
4922 5372 4.015872 TCCCAAAATAAGCGTCTCAGTT 57.984 40.909 0.00 0.00 0.00 3.16
4923 5373 3.751175 TCCCAAAATAAGCGTCTCAGTTG 59.249 43.478 0.00 0.00 0.00 3.16
4924 5374 3.751175 CCCAAAATAAGCGTCTCAGTTGA 59.249 43.478 0.00 0.00 0.00 3.18
4925 5375 4.142816 CCCAAAATAAGCGTCTCAGTTGAG 60.143 45.833 2.69 2.69 43.36 3.02
4939 5389 5.997746 TCTCAGTTGAGACACTTATTTTGGG 59.002 40.000 7.72 0.00 45.48 4.12
4940 5390 5.935945 TCAGTTGAGACACTTATTTTGGGA 58.064 37.500 0.00 0.00 0.00 4.37
4941 5391 5.763204 TCAGTTGAGACACTTATTTTGGGAC 59.237 40.000 0.00 0.00 0.00 4.46
4942 5392 4.755123 AGTTGAGACACTTATTTTGGGACG 59.245 41.667 0.00 0.00 0.00 4.79
4943 5393 3.670625 TGAGACACTTATTTTGGGACGG 58.329 45.455 0.00 0.00 0.00 4.79
4944 5394 3.325425 TGAGACACTTATTTTGGGACGGA 59.675 43.478 0.00 0.00 0.00 4.69
4945 5395 3.933332 GAGACACTTATTTTGGGACGGAG 59.067 47.826 0.00 0.00 0.00 4.63
4946 5396 3.007635 GACACTTATTTTGGGACGGAGG 58.992 50.000 0.00 0.00 0.00 4.30
4947 5397 2.374170 ACACTTATTTTGGGACGGAGGT 59.626 45.455 0.00 0.00 0.00 3.85
4948 5398 3.583966 ACACTTATTTTGGGACGGAGGTA 59.416 43.478 0.00 0.00 0.00 3.08
4949 5399 4.189231 CACTTATTTTGGGACGGAGGTAG 58.811 47.826 0.00 0.00 0.00 3.18
4972 5432 6.401394 AGTATTTGGAAACGGAGGTAGTTAC 58.599 40.000 0.00 0.00 0.00 2.50
5060 5520 4.378459 GCAGTAAACAGTAGTTCATGCACC 60.378 45.833 0.00 0.00 38.83 5.01
5108 5568 2.442236 TGCAGATTCCCCTTTGATCC 57.558 50.000 0.00 0.00 0.00 3.36
5239 5700 3.149196 ACAGTGCTTGTAAGTTGATGGG 58.851 45.455 0.00 0.00 38.56 4.00
5264 5725 9.631452 GGTACCATTTCGTAGAGTATATTTACC 57.369 37.037 7.15 0.00 38.43 2.85
5297 5758 2.099098 GGAATGGTGTATGGAAAAGCCG 59.901 50.000 0.00 0.00 40.66 5.52
5411 5873 7.877612 TGAAGTATTTCTCACTTGCATCAACTA 59.122 33.333 0.00 0.00 36.38 2.24
5458 5920 3.897239 TGTTGAAGTGGGTGAGAACATT 58.103 40.909 0.00 0.00 0.00 2.71
5558 6020 2.281484 ACACGAATGCTGCGGGTT 60.281 55.556 0.00 0.00 43.89 4.11
5654 6116 4.697352 GTGTCATATGGTGCTTTGTTCTCT 59.303 41.667 2.13 0.00 0.00 3.10
5657 6119 5.587844 GTCATATGGTGCTTTGTTCTCTGAT 59.412 40.000 2.13 0.00 0.00 2.90
5700 6162 6.876257 ACTCACCTTCTTAGATAAGTTTGCTG 59.124 38.462 0.00 0.00 34.93 4.41
5705 6167 2.729028 TAGATAAGTTTGCTGGGCCC 57.271 50.000 17.59 17.59 0.00 5.80
5717 6179 3.322862 TGCTGGGCCCTAGACATAATTA 58.677 45.455 25.70 0.00 0.00 1.40
5864 6326 7.094631 GCCCTTTTATAACTTGGTAGTTTTGG 58.905 38.462 0.00 0.00 41.85 3.28
5958 6420 1.323412 TGTATGGTTTTGCGGCAACT 58.677 45.000 16.15 0.88 0.00 3.16
5959 6421 1.683917 TGTATGGTTTTGCGGCAACTT 59.316 42.857 16.15 5.28 0.00 2.66
6039 6502 4.630894 TTGTCCCGCATTTAGCATTTAG 57.369 40.909 0.00 0.00 46.13 1.85
6154 6618 5.762045 AGCAATGTGTTTCATGTACACTTC 58.238 37.500 24.03 14.87 44.76 3.01
6186 6650 4.397417 GCATCAAGTCAGGAGCTACAAAAT 59.603 41.667 0.00 0.00 0.00 1.82
6196 6660 4.019321 AGGAGCTACAAAATCCTAGCAACA 60.019 41.667 0.00 0.00 41.72 3.33
6275 6739 2.587574 CTTCTCGATGAAGCTCGCC 58.412 57.895 10.36 0.00 44.62 5.54
6317 6781 1.526686 CAGCACAGCCAAGGACACA 60.527 57.895 0.00 0.00 0.00 3.72
6341 6805 2.581354 GCTCTCTGCACCACCGAT 59.419 61.111 0.00 0.00 42.31 4.18
6350 6814 1.371183 CACCACCGATGTCACCAGT 59.629 57.895 0.00 0.00 0.00 4.00
6383 6847 3.692406 GCGAGGAACCCGACCACT 61.692 66.667 0.00 0.00 0.00 4.00
6397 6861 3.049674 CACTGCCACCGACGCAAT 61.050 61.111 0.00 0.00 35.40 3.56
6426 6890 3.207669 CCTCCAGCGCCTTCATGC 61.208 66.667 2.29 0.00 0.00 4.06
6427 6891 3.207669 CTCCAGCGCCTTCATGCC 61.208 66.667 2.29 0.00 0.00 4.40
6480 6944 2.809601 CGTGCGACCAGTACCTGC 60.810 66.667 0.00 0.00 31.32 4.85
6481 6945 2.342279 GTGCGACCAGTACCTGCA 59.658 61.111 0.00 0.00 0.00 4.41
6484 6948 1.257750 TGCGACCAGTACCTGCAGAT 61.258 55.000 17.39 0.00 0.00 2.90
6508 6972 3.181503 CCATCGCAGAATTTGTTCAGAGG 60.182 47.826 0.00 0.00 43.58 3.69
6512 6976 2.819348 GCAGAATTTGTTCAGAGGGGGT 60.819 50.000 0.00 0.00 0.00 4.95
6516 6980 1.975660 TTTGTTCAGAGGGGGTTTCG 58.024 50.000 0.00 0.00 0.00 3.46
6523 6987 0.035056 AGAGGGGGTTTCGCTGAATG 60.035 55.000 0.00 0.00 38.88 2.67
6524 6988 0.322546 GAGGGGGTTTCGCTGAATGT 60.323 55.000 0.00 0.00 38.88 2.71
6538 7002 2.862541 TGAATGTTCAGGTGTTCCAGG 58.137 47.619 0.00 0.00 35.89 4.45
6539 7003 1.541588 GAATGTTCAGGTGTTCCAGGC 59.458 52.381 0.00 0.00 35.89 4.85
6540 7004 0.478072 ATGTTCAGGTGTTCCAGGCA 59.522 50.000 0.00 0.00 35.89 4.75
6541 7005 0.478072 TGTTCAGGTGTTCCAGGCAT 59.522 50.000 0.00 0.00 35.89 4.40
6542 7006 1.168714 GTTCAGGTGTTCCAGGCATC 58.831 55.000 0.00 0.00 35.89 3.91
6545 7009 2.438434 GGTGTTCCAGGCATCCGG 60.438 66.667 0.00 0.00 0.00 5.14
6546 7010 2.351276 GTGTTCCAGGCATCCGGT 59.649 61.111 0.00 0.00 0.00 5.28
6547 7011 1.303317 GTGTTCCAGGCATCCGGTT 60.303 57.895 0.00 0.00 0.00 4.44
6548 7012 0.893727 GTGTTCCAGGCATCCGGTTT 60.894 55.000 0.00 0.00 0.00 3.27
6549 7013 0.893270 TGTTCCAGGCATCCGGTTTG 60.893 55.000 0.00 1.55 0.00 2.93
6550 7014 1.976474 TTCCAGGCATCCGGTTTGC 60.976 57.895 19.59 19.59 39.41 3.68
6574 7038 4.627467 CGTGGAGAAGAGTTAGAATGTTGG 59.373 45.833 0.00 0.00 0.00 3.77
6576 7040 5.639931 GTGGAGAAGAGTTAGAATGTTGGAC 59.360 44.000 0.00 0.00 0.00 4.02
6578 7042 5.872070 GGAGAAGAGTTAGAATGTTGGACTG 59.128 44.000 0.00 0.00 0.00 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 3.642778 TTCTCGTGGTGGCGCTAGC 62.643 63.158 16.69 16.69 44.18 3.42
11 12 1.517257 CTTCTCGTGGTGGCGCTAG 60.517 63.158 7.64 0.00 0.00 3.42
12 13 2.571757 CTTCTCGTGGTGGCGCTA 59.428 61.111 7.64 0.00 0.00 4.26
13 14 4.379243 CCTTCTCGTGGTGGCGCT 62.379 66.667 7.64 0.00 0.00 5.92
14 15 3.665675 ATCCTTCTCGTGGTGGCGC 62.666 63.158 0.00 0.00 0.00 6.53
15 16 1.519455 GATCCTTCTCGTGGTGGCG 60.519 63.158 0.00 0.00 0.00 5.69
16 17 1.153349 GGATCCTTCTCGTGGTGGC 60.153 63.158 3.84 0.00 0.00 5.01
17 18 1.141881 CGGATCCTTCTCGTGGTGG 59.858 63.158 10.75 0.00 0.00 4.61
18 19 1.519455 GCGGATCCTTCTCGTGGTG 60.519 63.158 10.75 0.00 0.00 4.17
19 20 2.722201 GGCGGATCCTTCTCGTGGT 61.722 63.158 10.75 0.00 0.00 4.16
20 21 2.107141 GGCGGATCCTTCTCGTGG 59.893 66.667 10.75 0.00 0.00 4.94
21 22 2.107141 GGGCGGATCCTTCTCGTG 59.893 66.667 10.75 0.00 34.39 4.35
22 23 3.155167 GGGGCGGATCCTTCTCGT 61.155 66.667 10.75 0.00 34.39 4.18
23 24 3.930012 GGGGGCGGATCCTTCTCG 61.930 72.222 10.75 0.00 34.39 4.04
24 25 3.930012 CGGGGGCGGATCCTTCTC 61.930 72.222 10.75 0.85 34.39 2.87
108 109 4.326227 TACTCCCCCACCGGTGCT 62.326 66.667 29.75 8.51 0.00 4.40
109 110 4.091939 GTACTCCCCCACCGGTGC 62.092 72.222 29.75 9.01 0.00 5.01
110 111 1.000739 TAGTACTCCCCCACCGGTG 59.999 63.158 28.26 28.26 0.00 4.94
111 112 1.309006 CTAGTACTCCCCCACCGGT 59.691 63.158 0.00 0.00 0.00 5.28
112 113 1.457079 CCTAGTACTCCCCCACCGG 60.457 68.421 0.00 0.00 0.00 5.28
113 114 1.041447 CACCTAGTACTCCCCCACCG 61.041 65.000 0.00 0.00 0.00 4.94
114 115 0.690077 CCACCTAGTACTCCCCCACC 60.690 65.000 0.00 0.00 0.00 4.61
115 116 0.042281 ACCACCTAGTACTCCCCCAC 59.958 60.000 0.00 0.00 0.00 4.61
116 117 0.794934 AACCACCTAGTACTCCCCCA 59.205 55.000 0.00 0.00 0.00 4.96
117 118 1.201424 CAACCACCTAGTACTCCCCC 58.799 60.000 0.00 0.00 0.00 5.40
118 119 0.540454 GCAACCACCTAGTACTCCCC 59.460 60.000 0.00 0.00 0.00 4.81
119 120 0.175073 CGCAACCACCTAGTACTCCC 59.825 60.000 0.00 0.00 0.00 4.30
120 121 0.459759 GCGCAACCACCTAGTACTCC 60.460 60.000 0.30 0.00 0.00 3.85
121 122 0.459759 GGCGCAACCACCTAGTACTC 60.460 60.000 10.83 0.00 38.86 2.59
122 123 1.595357 GGCGCAACCACCTAGTACT 59.405 57.895 10.83 0.00 38.86 2.73
123 124 1.449070 GGGCGCAACCACCTAGTAC 60.449 63.158 10.83 0.00 42.05 2.73
124 125 2.662070 GGGGCGCAACCACCTAGTA 61.662 63.158 10.83 0.00 42.05 1.82
125 126 4.029809 GGGGCGCAACCACCTAGT 62.030 66.667 10.83 0.00 42.05 2.57
142 143 2.898920 TACTACCCAGGCGACTCCGG 62.899 65.000 0.00 0.00 40.21 5.14
143 144 0.822532 ATACTACCCAGGCGACTCCG 60.823 60.000 0.00 0.00 40.21 4.63
144 145 1.068741 CAATACTACCCAGGCGACTCC 59.931 57.143 0.00 0.00 40.21 3.85
145 146 1.755380 ACAATACTACCCAGGCGACTC 59.245 52.381 0.00 0.00 40.21 3.36
146 147 1.755380 GACAATACTACCCAGGCGACT 59.245 52.381 0.00 0.00 46.44 4.18
147 148 1.479323 TGACAATACTACCCAGGCGAC 59.521 52.381 0.00 0.00 0.00 5.19
148 149 1.855295 TGACAATACTACCCAGGCGA 58.145 50.000 0.00 0.00 0.00 5.54
149 150 2.910688 ATGACAATACTACCCAGGCG 57.089 50.000 0.00 0.00 0.00 5.52
150 151 7.937394 ACTTTATAATGACAATACTACCCAGGC 59.063 37.037 5.43 0.00 0.00 4.85
151 152 9.847224 AACTTTATAATGACAATACTACCCAGG 57.153 33.333 5.43 0.00 0.00 4.45
180 181 9.439537 GAGAGAGACTTGTTACAAATTTGAAAC 57.560 33.333 24.64 9.45 0.00 2.78
184 185 7.919690 TGTGAGAGAGACTTGTTACAAATTTG 58.080 34.615 16.67 16.67 0.00 2.32
200 201 4.092091 GTCACGCCTTAAAATGTGAGAGAG 59.908 45.833 4.17 0.00 41.59 3.20
225 227 5.293814 GCTCTCTATTCCTATGACGCGTATA 59.706 44.000 13.97 4.58 0.00 1.47
241 243 5.438833 ACGTTGGACTAGTTAGCTCTCTAT 58.561 41.667 0.00 0.00 0.00 1.98
261 263 8.915036 ACTATTAGTTGAGGAAGATGATTACGT 58.085 33.333 0.00 0.00 0.00 3.57
266 268 8.646900 GGAAGACTATTAGTTGAGGAAGATGAT 58.353 37.037 0.00 0.00 0.00 2.45
267 269 7.201830 CGGAAGACTATTAGTTGAGGAAGATGA 60.202 40.741 0.00 0.00 0.00 2.92
293 295 3.265791 GAGTGGATGGACAGATGTGAAC 58.734 50.000 0.00 0.00 0.00 3.18
296 298 2.027837 TGTGAGTGGATGGACAGATGTG 60.028 50.000 0.00 0.00 0.00 3.21
300 302 2.015456 AGTGTGAGTGGATGGACAGA 57.985 50.000 0.00 0.00 0.00 3.41
301 303 2.301296 AGAAGTGTGAGTGGATGGACAG 59.699 50.000 0.00 0.00 0.00 3.51
304 306 3.390967 TCAAAGAAGTGTGAGTGGATGGA 59.609 43.478 0.00 0.00 0.00 3.41
307 309 5.874093 AGATTCAAAGAAGTGTGAGTGGAT 58.126 37.500 0.00 0.00 0.00 3.41
311 313 5.817816 ACGAAAGATTCAAAGAAGTGTGAGT 59.182 36.000 0.00 0.00 0.00 3.41
317 319 6.316390 AGAACACACGAAAGATTCAAAGAAGT 59.684 34.615 0.00 0.00 0.00 3.01
361 363 9.802039 AGTGGACAAAAGGATAGTGTTAAATTA 57.198 29.630 0.00 0.00 0.00 1.40
362 364 8.706322 AGTGGACAAAAGGATAGTGTTAAATT 57.294 30.769 0.00 0.00 0.00 1.82
363 365 7.393515 GGAGTGGACAAAAGGATAGTGTTAAAT 59.606 37.037 0.00 0.00 0.00 1.40
365 367 6.183361 TGGAGTGGACAAAAGGATAGTGTTAA 60.183 38.462 0.00 0.00 0.00 2.01
366 368 5.308497 TGGAGTGGACAAAAGGATAGTGTTA 59.692 40.000 0.00 0.00 0.00 2.41
367 369 4.104102 TGGAGTGGACAAAAGGATAGTGTT 59.896 41.667 0.00 0.00 0.00 3.32
368 370 3.650942 TGGAGTGGACAAAAGGATAGTGT 59.349 43.478 0.00 0.00 0.00 3.55
369 371 4.286297 TGGAGTGGACAAAAGGATAGTG 57.714 45.455 0.00 0.00 0.00 2.74
371 373 4.164988 AGGATGGAGTGGACAAAAGGATAG 59.835 45.833 0.00 0.00 0.00 2.08
372 374 4.111577 AGGATGGAGTGGACAAAAGGATA 58.888 43.478 0.00 0.00 0.00 2.59
373 375 2.922283 AGGATGGAGTGGACAAAAGGAT 59.078 45.455 0.00 0.00 0.00 3.24
374 376 2.348472 AGGATGGAGTGGACAAAAGGA 58.652 47.619 0.00 0.00 0.00 3.36
376 378 4.637534 CACATAGGATGGAGTGGACAAAAG 59.362 45.833 0.00 0.00 33.60 2.27
377 379 4.588899 CACATAGGATGGAGTGGACAAAA 58.411 43.478 0.00 0.00 33.60 2.44
390 396 6.769822 CCAAGTAGAATTCAAGCACATAGGAT 59.230 38.462 8.44 0.00 0.00 3.24
395 401 4.081406 TGCCAAGTAGAATTCAAGCACAT 58.919 39.130 8.44 0.00 0.00 3.21
420 426 6.295916 CCCTATTAGAAGCCTATACCCACAAG 60.296 46.154 0.00 0.00 0.00 3.16
421 427 5.546499 CCCTATTAGAAGCCTATACCCACAA 59.454 44.000 0.00 0.00 0.00 3.33
422 428 5.091552 CCCTATTAGAAGCCTATACCCACA 58.908 45.833 0.00 0.00 0.00 4.17
423 429 4.470304 CCCCTATTAGAAGCCTATACCCAC 59.530 50.000 0.00 0.00 0.00 4.61
424 430 4.695606 CCCCTATTAGAAGCCTATACCCA 58.304 47.826 0.00 0.00 0.00 4.51
425 431 3.455177 GCCCCTATTAGAAGCCTATACCC 59.545 52.174 0.00 0.00 0.00 3.69
426 432 3.132467 CGCCCCTATTAGAAGCCTATACC 59.868 52.174 0.00 0.00 0.00 2.73
427 433 3.768215 ACGCCCCTATTAGAAGCCTATAC 59.232 47.826 0.00 0.00 0.00 1.47
428 434 4.021916 GACGCCCCTATTAGAAGCCTATA 58.978 47.826 0.00 0.00 0.00 1.31
429 435 2.832733 GACGCCCCTATTAGAAGCCTAT 59.167 50.000 0.00 0.00 0.00 2.57
430 436 2.245582 GACGCCCCTATTAGAAGCCTA 58.754 52.381 0.00 0.00 0.00 3.93
431 437 1.049402 GACGCCCCTATTAGAAGCCT 58.951 55.000 0.00 0.00 0.00 4.58
432 438 0.319641 CGACGCCCCTATTAGAAGCC 60.320 60.000 0.00 0.00 0.00 4.35
433 439 0.319641 CCGACGCCCCTATTAGAAGC 60.320 60.000 0.00 0.00 0.00 3.86
434 440 1.038280 ACCGACGCCCCTATTAGAAG 58.962 55.000 0.00 0.00 0.00 2.85
435 441 1.137479 CAACCGACGCCCCTATTAGAA 59.863 52.381 0.00 0.00 0.00 2.10
436 442 0.748450 CAACCGACGCCCCTATTAGA 59.252 55.000 0.00 0.00 0.00 2.10
437 443 0.878961 GCAACCGACGCCCCTATTAG 60.879 60.000 0.00 0.00 0.00 1.73
455 461 2.736670 AGATGGGTGGTTGATTAGGC 57.263 50.000 0.00 0.00 0.00 3.93
477 483 2.004733 GACAACATACACCCTAACGGC 58.995 52.381 0.00 0.00 33.26 5.68
503 509 6.140110 CACCAAAAGTGTTAACATACGGAAG 58.860 40.000 12.26 1.63 41.93 3.46
504 510 5.008811 CCACCAAAAGTGTTAACATACGGAA 59.991 40.000 12.26 0.00 45.74 4.30
560 568 1.514443 GGAGAAGAAGCGACGACGG 60.514 63.158 9.67 0.00 40.15 4.79
561 569 0.179161 ATGGAGAAGAAGCGACGACG 60.179 55.000 2.12 2.12 42.93 5.12
565 573 0.179124 AGCGATGGAGAAGAAGCGAC 60.179 55.000 0.00 0.00 0.00 5.19
566 574 0.532573 AAGCGATGGAGAAGAAGCGA 59.467 50.000 0.00 0.00 0.00 4.93
567 575 1.325943 GAAAGCGATGGAGAAGAAGCG 59.674 52.381 0.00 0.00 0.00 4.68
580 588 5.854010 ATAGAGGTACATGAAGAAAGCGA 57.146 39.130 0.00 0.00 0.00 4.93
608 616 2.320781 AGAGAGGACGGTTATGATGGG 58.679 52.381 0.00 0.00 0.00 4.00
609 617 3.639094 AGAAGAGAGGACGGTTATGATGG 59.361 47.826 0.00 0.00 0.00 3.51
618 626 3.761752 AGAAGAAGAAGAAGAGAGGACGG 59.238 47.826 0.00 0.00 0.00 4.79
619 627 5.183140 AGAAGAAGAAGAAGAAGAGAGGACG 59.817 44.000 0.00 0.00 0.00 4.79
638 646 9.362151 ACTAGAAGAAGAAGAAGAAGAAGAAGA 57.638 33.333 0.00 0.00 0.00 2.87
639 647 9.981114 AACTAGAAGAAGAAGAAGAAGAAGAAG 57.019 33.333 0.00 0.00 0.00 2.85
640 648 9.757227 CAACTAGAAGAAGAAGAAGAAGAAGAA 57.243 33.333 0.00 0.00 0.00 2.52
641 649 7.870445 GCAACTAGAAGAAGAAGAAGAAGAAGA 59.130 37.037 0.00 0.00 0.00 2.87
642 650 7.148820 CGCAACTAGAAGAAGAAGAAGAAGAAG 60.149 40.741 0.00 0.00 0.00 2.85
643 651 6.642950 CGCAACTAGAAGAAGAAGAAGAAGAA 59.357 38.462 0.00 0.00 0.00 2.52
644 652 6.153067 CGCAACTAGAAGAAGAAGAAGAAGA 58.847 40.000 0.00 0.00 0.00 2.87
645 653 5.164002 GCGCAACTAGAAGAAGAAGAAGAAG 60.164 44.000 0.30 0.00 0.00 2.85
646 654 4.686554 GCGCAACTAGAAGAAGAAGAAGAA 59.313 41.667 0.30 0.00 0.00 2.52
647 655 4.238514 GCGCAACTAGAAGAAGAAGAAGA 58.761 43.478 0.30 0.00 0.00 2.87
648 656 3.369451 GGCGCAACTAGAAGAAGAAGAAG 59.631 47.826 10.83 0.00 0.00 2.85
649 657 3.326747 GGCGCAACTAGAAGAAGAAGAA 58.673 45.455 10.83 0.00 0.00 2.52
650 658 2.353803 GGGCGCAACTAGAAGAAGAAGA 60.354 50.000 10.83 0.00 0.00 2.87
651 659 2.003301 GGGCGCAACTAGAAGAAGAAG 58.997 52.381 10.83 0.00 0.00 2.85
652 660 1.623811 AGGGCGCAACTAGAAGAAGAA 59.376 47.619 10.83 0.00 0.00 2.52
653 661 1.204941 GAGGGCGCAACTAGAAGAAGA 59.795 52.381 10.83 0.00 0.00 2.87
654 662 1.066858 TGAGGGCGCAACTAGAAGAAG 60.067 52.381 10.83 0.00 0.00 2.85
655 663 0.973632 TGAGGGCGCAACTAGAAGAA 59.026 50.000 10.83 0.00 0.00 2.52
656 664 1.134699 CATGAGGGCGCAACTAGAAGA 60.135 52.381 10.83 0.00 0.00 2.87
657 665 1.293924 CATGAGGGCGCAACTAGAAG 58.706 55.000 10.83 0.00 0.00 2.85
658 666 0.613260 ACATGAGGGCGCAACTAGAA 59.387 50.000 10.83 0.00 0.00 2.10
659 667 0.108186 CACATGAGGGCGCAACTAGA 60.108 55.000 10.83 0.00 0.00 2.43
660 668 1.091771 CCACATGAGGGCGCAACTAG 61.092 60.000 10.83 3.23 0.00 2.57
661 669 1.078497 CCACATGAGGGCGCAACTA 60.078 57.895 10.83 0.00 0.00 2.24
669 677 4.402056 AACGAATAGTACCACATGAGGG 57.598 45.455 14.11 10.10 0.00 4.30
670 678 5.416083 TGAAACGAATAGTACCACATGAGG 58.584 41.667 7.74 7.74 0.00 3.86
676 684 7.263496 AGGTCTTATGAAACGAATAGTACCAC 58.737 38.462 0.00 0.00 0.00 4.16
677 685 7.414222 AGGTCTTATGAAACGAATAGTACCA 57.586 36.000 0.00 0.00 0.00 3.25
681 689 6.040878 CGGAAGGTCTTATGAAACGAATAGT 58.959 40.000 0.00 0.00 0.00 2.12
682 690 5.050972 GCGGAAGGTCTTATGAAACGAATAG 60.051 44.000 0.00 0.00 0.00 1.73
687 729 1.664151 GGCGGAAGGTCTTATGAAACG 59.336 52.381 0.00 0.00 0.00 3.60
691 733 3.278574 CATTTGGCGGAAGGTCTTATGA 58.721 45.455 0.00 0.00 0.00 2.15
734 776 8.098912 GGAAAGGAAGAACATAGTACAAAGGTA 58.901 37.037 0.00 0.00 0.00 3.08
737 779 7.334671 GGAGGAAAGGAAGAACATAGTACAAAG 59.665 40.741 0.00 0.00 0.00 2.77
743 785 4.019231 GTGGGAGGAAAGGAAGAACATAGT 60.019 45.833 0.00 0.00 0.00 2.12
744 786 4.226168 AGTGGGAGGAAAGGAAGAACATAG 59.774 45.833 0.00 0.00 0.00 2.23
864 906 1.066143 TCTCTCTTTTGCGGTGGATCC 60.066 52.381 4.20 4.20 0.00 3.36
873 918 3.981211 TGTGCCATTTTCTCTCTTTTGC 58.019 40.909 0.00 0.00 0.00 3.68
883 928 3.443099 GGCCTAAGATGTGCCATTTTC 57.557 47.619 0.00 0.00 44.70 2.29
920 996 3.407967 GACCTCGGATTGGGCCCA 61.408 66.667 24.45 24.45 0.00 5.36
1041 1156 0.553862 AGTGGAGGAGGGAGGAGAGA 60.554 60.000 0.00 0.00 0.00 3.10
1321 1436 2.879103 TCTCCCCAAAATTCGCTTCT 57.121 45.000 0.00 0.00 0.00 2.85
1323 1438 3.831911 TGAATTCTCCCCAAAATTCGCTT 59.168 39.130 7.05 0.00 42.27 4.68
1333 1448 0.322456 CGCCAAGTGAATTCTCCCCA 60.322 55.000 7.05 0.00 0.00 4.96
1334 1449 1.032114 CCGCCAAGTGAATTCTCCCC 61.032 60.000 7.05 0.00 0.00 4.81
1345 1460 4.379243 CTGCTCCGTCCGCCAAGT 62.379 66.667 0.00 0.00 0.00 3.16
1408 1523 5.296531 AGCATTACATGACATTTGCACGATA 59.703 36.000 0.00 0.00 32.66 2.92
1437 1552 6.426328 TCACAGCAAAGAAACACAAAAATTGT 59.574 30.769 0.00 0.00 46.75 2.71
1457 1573 6.991485 ACATAAAATTTGAGCGTTTCACAG 57.009 33.333 0.00 0.00 34.94 3.66
1488 1604 1.024579 CCACGATTTTGAGGACCCCG 61.025 60.000 0.00 0.00 0.00 5.73
1531 1647 1.026718 GCACCAGTGGCACTATGACC 61.027 60.000 26.73 11.99 0.00 4.02
1651 1767 8.445193 AACTATAACTGTAGAAAACGACTTCG 57.555 34.615 0.00 0.00 46.33 3.79
1657 1773 7.222224 CCCTGCTAACTATAACTGTAGAAAACG 59.778 40.741 0.00 0.00 0.00 3.60
1725 1850 9.941325 AATCAAGATGCCAATAAAAATGTACAA 57.059 25.926 0.00 0.00 0.00 2.41
1758 1883 4.097892 AGGCATTAGCAAAATTAAGACCCG 59.902 41.667 0.00 0.00 44.61 5.28
2032 2157 2.791179 TGAGGAAATATGGAGGGGCATT 59.209 45.455 0.00 0.00 0.00 3.56
2036 2161 2.444766 AGCTTGAGGAAATATGGAGGGG 59.555 50.000 0.00 0.00 0.00 4.79
2059 2184 8.477256 CAGAAACATGGGTGAATATAAACCATT 58.523 33.333 5.35 0.00 39.78 3.16
2076 2201 7.489757 GCTCTTACTTAGTAGACCAGAAACATG 59.510 40.741 0.00 0.00 0.00 3.21
2364 2496 1.210931 CTTGGCATGTCCTGTTGCG 59.789 57.895 0.00 0.00 39.78 4.85
2382 2514 6.913673 TAAGTTATCTTTTCGTTGTTGGCAAC 59.086 34.615 23.12 23.12 41.41 4.17
2383 2515 5.508200 AGTTATCTTTTCGTTGTTGGCAA 57.492 34.783 0.00 0.00 0.00 4.52
2384 2516 5.508200 AAGTTATCTTTTCGTTGTTGGCA 57.492 34.783 0.00 0.00 0.00 4.92
2385 2517 6.072893 TCCTAAGTTATCTTTTCGTTGTTGGC 60.073 38.462 0.00 0.00 35.36 4.52
2386 2518 7.429636 TCCTAAGTTATCTTTTCGTTGTTGG 57.570 36.000 0.00 0.00 35.36 3.77
2520 2653 5.022122 TCATTTGAGGGGACATTTTGCATA 58.978 37.500 0.00 0.00 0.00 3.14
2654 2788 1.059584 TCCCTCAGTTCCACCTGCAA 61.060 55.000 0.00 0.00 32.32 4.08
2737 2871 4.291249 TGCCTTTTGTATAGGGAAGGAGTT 59.709 41.667 10.60 0.00 40.86 3.01
2750 2884 7.686434 ACTTTAGTCCTAGAATGCCTTTTGTA 58.314 34.615 0.00 0.00 0.00 2.41
2781 2918 7.655328 CAGACTGAAACATAGAAGCCTATAAGG 59.345 40.741 0.00 0.00 38.80 2.69
2782 2919 7.655328 CCAGACTGAAACATAGAAGCCTATAAG 59.345 40.741 3.32 0.00 33.98 1.73
2783 2920 7.125811 ACCAGACTGAAACATAGAAGCCTATAA 59.874 37.037 3.32 0.00 33.98 0.98
2784 2921 6.611642 ACCAGACTGAAACATAGAAGCCTATA 59.388 38.462 3.32 0.00 33.98 1.31
2785 2922 5.426833 ACCAGACTGAAACATAGAAGCCTAT 59.573 40.000 3.32 0.00 36.06 2.57
2801 2938 3.748568 GCTACAGAAAGGAAACCAGACTG 59.251 47.826 0.00 0.00 0.00 3.51
2901 3041 7.559590 AGAAATTATTGCTCAGCTTCGTAAT 57.440 32.000 0.00 0.00 0.00 1.89
3039 3330 9.029243 CATCCAGCTTCTATAATCATTATCGTC 57.971 37.037 0.00 0.00 0.00 4.20
3069 3360 6.412214 TGTAATACTCCTAAAAGGCTGGTTC 58.588 40.000 0.00 0.00 34.61 3.62
3309 3600 2.338500 GTAGCCAGGAGTTCGTCAAAG 58.662 52.381 0.00 0.00 0.00 2.77
3316 3607 0.984995 AGTTGGGTAGCCAGGAGTTC 59.015 55.000 14.38 2.58 0.00 3.01
3504 3802 7.419518 CCTTCCTGATACAGATATGTGAAAGGT 60.420 40.741 6.90 0.00 32.44 3.50
3562 3860 4.401925 AGGAATGACAAGAAAACAGGGAG 58.598 43.478 0.00 0.00 0.00 4.30
3596 3929 2.472232 TAGACAGCGTCGCACCACAG 62.472 60.000 21.09 4.27 37.67 3.66
3597 3930 1.873270 ATAGACAGCGTCGCACCACA 61.873 55.000 21.09 1.42 37.67 4.17
3598 3931 0.099968 TATAGACAGCGTCGCACCAC 59.900 55.000 21.09 7.73 37.67 4.16
3599 3932 1.029681 ATATAGACAGCGTCGCACCA 58.970 50.000 21.09 0.00 37.67 4.17
3600 3933 2.135664 AATATAGACAGCGTCGCACC 57.864 50.000 21.09 7.68 37.67 5.01
3601 3934 5.824243 ATAAAATATAGACAGCGTCGCAC 57.176 39.130 21.09 10.28 37.67 5.34
3602 3935 7.933728 TTAATAAAATATAGACAGCGTCGCA 57.066 32.000 21.09 0.00 37.67 5.10
3625 3958 9.373450 AGATGAAGTCACTACTACATGGATATT 57.627 33.333 0.00 0.00 33.75 1.28
3626 3959 8.801299 CAGATGAAGTCACTACTACATGGATAT 58.199 37.037 0.00 0.00 33.75 1.63
3627 3960 7.231519 CCAGATGAAGTCACTACTACATGGATA 59.768 40.741 0.00 0.00 33.75 2.59
3628 3961 6.041409 CCAGATGAAGTCACTACTACATGGAT 59.959 42.308 0.00 0.00 33.75 3.41
3629 3962 5.360999 CCAGATGAAGTCACTACTACATGGA 59.639 44.000 0.00 0.00 33.75 3.41
3640 3973 6.581171 AAAAAGGATTCCAGATGAAGTCAC 57.419 37.500 5.29 0.00 36.14 3.67
4007 4341 1.724545 TAGGCCCGCTAATACATGGT 58.275 50.000 0.00 0.00 0.00 3.55
4053 4387 6.858993 GTCTTTATTGTTGCCAACGAATTACA 59.141 34.615 0.76 0.00 32.26 2.41
4118 4452 1.268083 ACATCGAGCGAGTCATGTACG 60.268 52.381 0.00 0.00 30.02 3.67
4204 4538 9.672086 CGGTCTCAATCAAAATTTACTTTAACA 57.328 29.630 0.00 0.00 0.00 2.41
4258 4592 8.105829 ACAGTTACCTTCATCTCATCTGAAAAT 58.894 33.333 0.00 0.00 32.53 1.82
4475 4924 6.112734 CCCATAAAAGGTATTGGAAAAAGGC 58.887 40.000 0.00 0.00 0.00 4.35
4477 4926 8.371699 TCAACCCATAAAAGGTATTGGAAAAAG 58.628 33.333 0.00 0.00 36.27 2.27
4480 4929 7.013834 ACTCAACCCATAAAAGGTATTGGAAA 58.986 34.615 0.00 0.00 36.27 3.13
4890 5340 4.141251 GCTTATTTTGGGATGGAGGGAGTA 60.141 45.833 0.00 0.00 0.00 2.59
4891 5341 3.373110 GCTTATTTTGGGATGGAGGGAGT 60.373 47.826 0.00 0.00 0.00 3.85
4892 5342 3.225940 GCTTATTTTGGGATGGAGGGAG 58.774 50.000 0.00 0.00 0.00 4.30
4893 5343 2.422803 CGCTTATTTTGGGATGGAGGGA 60.423 50.000 0.00 0.00 0.00 4.20
4894 5344 1.956477 CGCTTATTTTGGGATGGAGGG 59.044 52.381 0.00 0.00 0.00 4.30
4895 5345 2.618709 GACGCTTATTTTGGGATGGAGG 59.381 50.000 0.00 0.00 0.00 4.30
4896 5346 3.545703 AGACGCTTATTTTGGGATGGAG 58.454 45.455 0.00 0.00 0.00 3.86
4897 5347 3.054728 TGAGACGCTTATTTTGGGATGGA 60.055 43.478 0.00 0.00 0.00 3.41
4898 5348 3.278574 TGAGACGCTTATTTTGGGATGG 58.721 45.455 0.00 0.00 0.00 3.51
4899 5349 3.941483 ACTGAGACGCTTATTTTGGGATG 59.059 43.478 0.00 0.00 0.00 3.51
4900 5350 4.222124 ACTGAGACGCTTATTTTGGGAT 57.778 40.909 0.00 0.00 0.00 3.85
4901 5351 3.695830 ACTGAGACGCTTATTTTGGGA 57.304 42.857 0.00 0.00 0.00 4.37
4902 5352 3.751175 TCAACTGAGACGCTTATTTTGGG 59.249 43.478 0.00 0.00 0.00 4.12
4903 5353 4.690748 TCTCAACTGAGACGCTTATTTTGG 59.309 41.667 5.29 0.00 45.48 3.28
4904 5354 5.845985 TCTCAACTGAGACGCTTATTTTG 57.154 39.130 5.29 0.00 45.48 2.44
4916 5366 5.997746 TCCCAAAATAAGTGTCTCAACTGAG 59.002 40.000 0.00 0.00 43.36 3.35
4917 5367 5.763204 GTCCCAAAATAAGTGTCTCAACTGA 59.237 40.000 0.00 0.00 0.00 3.41
4918 5368 5.334105 CGTCCCAAAATAAGTGTCTCAACTG 60.334 44.000 0.00 0.00 0.00 3.16
4919 5369 4.755123 CGTCCCAAAATAAGTGTCTCAACT 59.245 41.667 0.00 0.00 0.00 3.16
4920 5370 4.083484 CCGTCCCAAAATAAGTGTCTCAAC 60.083 45.833 0.00 0.00 0.00 3.18
4921 5371 4.069304 CCGTCCCAAAATAAGTGTCTCAA 58.931 43.478 0.00 0.00 0.00 3.02
4922 5372 3.325425 TCCGTCCCAAAATAAGTGTCTCA 59.675 43.478 0.00 0.00 0.00 3.27
4923 5373 3.933332 CTCCGTCCCAAAATAAGTGTCTC 59.067 47.826 0.00 0.00 0.00 3.36
4924 5374 3.307480 CCTCCGTCCCAAAATAAGTGTCT 60.307 47.826 0.00 0.00 0.00 3.41
4925 5375 3.007635 CCTCCGTCCCAAAATAAGTGTC 58.992 50.000 0.00 0.00 0.00 3.67
4926 5376 2.374170 ACCTCCGTCCCAAAATAAGTGT 59.626 45.455 0.00 0.00 0.00 3.55
4927 5377 3.067684 ACCTCCGTCCCAAAATAAGTG 57.932 47.619 0.00 0.00 0.00 3.16
4928 5378 3.842436 ACTACCTCCGTCCCAAAATAAGT 59.158 43.478 0.00 0.00 0.00 2.24
4929 5379 4.482952 ACTACCTCCGTCCCAAAATAAG 57.517 45.455 0.00 0.00 0.00 1.73
4930 5380 6.564557 AATACTACCTCCGTCCCAAAATAA 57.435 37.500 0.00 0.00 0.00 1.40
4931 5381 6.350906 CAAATACTACCTCCGTCCCAAAATA 58.649 40.000 0.00 0.00 0.00 1.40
4932 5382 5.190677 CAAATACTACCTCCGTCCCAAAAT 58.809 41.667 0.00 0.00 0.00 1.82
4933 5383 4.566070 CCAAATACTACCTCCGTCCCAAAA 60.566 45.833 0.00 0.00 0.00 2.44
4934 5384 3.054948 CCAAATACTACCTCCGTCCCAAA 60.055 47.826 0.00 0.00 0.00 3.28
4935 5385 2.502538 CCAAATACTACCTCCGTCCCAA 59.497 50.000 0.00 0.00 0.00 4.12
4936 5386 2.112998 CCAAATACTACCTCCGTCCCA 58.887 52.381 0.00 0.00 0.00 4.37
4937 5387 2.391678 TCCAAATACTACCTCCGTCCC 58.608 52.381 0.00 0.00 0.00 4.46
4938 5388 4.186926 GTTTCCAAATACTACCTCCGTCC 58.813 47.826 0.00 0.00 0.00 4.79
4939 5389 3.861689 CGTTTCCAAATACTACCTCCGTC 59.138 47.826 0.00 0.00 0.00 4.79
4940 5390 3.368739 CCGTTTCCAAATACTACCTCCGT 60.369 47.826 0.00 0.00 0.00 4.69
4941 5391 3.119029 TCCGTTTCCAAATACTACCTCCG 60.119 47.826 0.00 0.00 0.00 4.63
4942 5392 4.439968 CTCCGTTTCCAAATACTACCTCC 58.560 47.826 0.00 0.00 0.00 4.30
4943 5393 4.081254 ACCTCCGTTTCCAAATACTACCTC 60.081 45.833 0.00 0.00 0.00 3.85
4944 5394 3.842436 ACCTCCGTTTCCAAATACTACCT 59.158 43.478 0.00 0.00 0.00 3.08
4945 5395 4.212143 ACCTCCGTTTCCAAATACTACC 57.788 45.455 0.00 0.00 0.00 3.18
4946 5396 5.970592 ACTACCTCCGTTTCCAAATACTAC 58.029 41.667 0.00 0.00 0.00 2.73
4947 5397 6.610075 AACTACCTCCGTTTCCAAATACTA 57.390 37.500 0.00 0.00 0.00 1.82
4948 5398 5.494390 AACTACCTCCGTTTCCAAATACT 57.506 39.130 0.00 0.00 0.00 2.12
4949 5399 5.289434 CGTAACTACCTCCGTTTCCAAATAC 59.711 44.000 0.00 0.00 0.00 1.89
4972 5432 2.341257 AGTTCTGCTGCATGTAACTCG 58.659 47.619 15.30 0.00 0.00 4.18
5108 5568 7.598189 ATTGATGATAAGAGATGATGAAGCG 57.402 36.000 0.00 0.00 0.00 4.68
5193 5653 2.687914 GCCATTATCCAGCAAGACCCTT 60.688 50.000 0.00 0.00 0.00 3.95
5264 5725 4.021102 ACACCATTCCACAAAGGTCTAG 57.979 45.455 0.00 0.00 39.02 2.43
5372 5834 2.751166 TACTTCAAGCTGCAGGACTC 57.249 50.000 17.12 0.00 0.00 3.36
5434 5896 4.277476 TGTTCTCACCCACTTCAACAAAT 58.723 39.130 0.00 0.00 0.00 2.32
5458 5920 6.764379 TGAATCATCCACAGTACTAACAACA 58.236 36.000 0.00 0.00 0.00 3.33
5544 6006 2.034879 AGACAACCCGCAGCATTCG 61.035 57.895 0.00 0.00 0.00 3.34
5558 6020 8.123639 AGAACTTAGCTATCAAAGTACAGACA 57.876 34.615 0.11 0.00 34.91 3.41
5654 6116 3.992943 ACAAGTCGAACCCCAATATCA 57.007 42.857 0.00 0.00 0.00 2.15
5657 6119 3.833650 TGAGTACAAGTCGAACCCCAATA 59.166 43.478 0.00 0.00 0.00 1.90
5700 6162 6.825721 CAGATTCATAATTATGTCTAGGGCCC 59.174 42.308 16.46 16.46 35.26 5.80
5705 6167 8.538701 AGGAGGCAGATTCATAATTATGTCTAG 58.461 37.037 21.89 14.17 35.26 2.43
5791 6253 3.278574 TCGCTTCCCCAAAACATATCTG 58.721 45.455 0.00 0.00 0.00 2.90
5864 6326 6.238759 GCACATCCCAGTATTATTTCACTTCC 60.239 42.308 0.00 0.00 0.00 3.46
5958 6420 6.350110 GCTATTACCAGGCAAATCAGAAACAA 60.350 38.462 0.00 0.00 0.00 2.83
5959 6421 5.125417 GCTATTACCAGGCAAATCAGAAACA 59.875 40.000 0.00 0.00 0.00 2.83
6023 6486 2.358898 AGTGCCTAAATGCTAAATGCGG 59.641 45.455 0.00 0.00 46.63 5.69
6062 6525 0.382515 TCAAACCAAAACCGGCTTCG 59.617 50.000 0.00 0.00 0.00 3.79
6118 6582 8.363390 TGAAACACATTGCTTTATTTGATACCA 58.637 29.630 0.00 0.00 0.00 3.25
6140 6604 5.181245 GCAGCTTTAGGAAGTGTACATGAAA 59.819 40.000 0.00 0.00 35.25 2.69
6154 6618 2.681848 CCTGACTTGATGCAGCTTTAGG 59.318 50.000 2.53 0.00 0.00 2.69
6186 6650 1.079127 GCGCCTTCTGTTGCTAGGA 60.079 57.895 0.00 0.00 0.00 2.94
6196 6660 0.536006 GCCATAATCCTGCGCCTTCT 60.536 55.000 4.18 0.00 0.00 2.85
6305 6769 2.594592 GCCGTTGTGTCCTTGGCT 60.595 61.111 0.00 0.00 42.44 4.75
6335 6799 0.670546 GGACACTGGTGACATCGGTG 60.671 60.000 23.43 23.43 44.59 4.94
6341 6805 1.705002 CCAAGGGGACACTGGTGACA 61.705 60.000 7.78 0.00 35.59 3.58
6380 6844 3.027170 GATTGCGTCGGTGGCAGTG 62.027 63.158 0.00 0.00 42.12 3.66
6383 6847 2.741985 CAGATTGCGTCGGTGGCA 60.742 61.111 0.00 0.00 38.93 4.92
6395 6859 4.751431 GAGGTTGCCCTGCAGATT 57.249 55.556 17.39 0.00 42.86 2.40
6494 6958 3.057526 CGAAACCCCCTCTGAACAAATTC 60.058 47.826 0.00 0.00 35.18 2.17
6499 6963 1.072505 GCGAAACCCCCTCTGAACA 59.927 57.895 0.00 0.00 0.00 3.18
6508 6972 1.200020 CTGAACATTCAGCGAAACCCC 59.800 52.381 8.63 0.00 46.97 4.95
6523 6987 1.168714 GATGCCTGGAACACCTGAAC 58.831 55.000 0.00 0.00 0.00 3.18
6524 6988 0.038166 GGATGCCTGGAACACCTGAA 59.962 55.000 0.00 0.00 0.00 3.02
6531 6995 1.883021 CAAACCGGATGCCTGGAAC 59.117 57.895 9.46 0.00 41.53 3.62
6545 7009 1.594331 AACTCTTCTCCACGGCAAAC 58.406 50.000 0.00 0.00 0.00 2.93
6546 7010 2.631062 TCTAACTCTTCTCCACGGCAAA 59.369 45.455 0.00 0.00 0.00 3.68
6547 7011 2.244695 TCTAACTCTTCTCCACGGCAA 58.755 47.619 0.00 0.00 0.00 4.52
6548 7012 1.919240 TCTAACTCTTCTCCACGGCA 58.081 50.000 0.00 0.00 0.00 5.69
6549 7013 3.190874 CATTCTAACTCTTCTCCACGGC 58.809 50.000 0.00 0.00 0.00 5.68
6550 7014 4.457834 ACATTCTAACTCTTCTCCACGG 57.542 45.455 0.00 0.00 0.00 4.94
6574 7038 4.499183 CTCATGGAGAGGTACAAACAGTC 58.501 47.826 0.00 0.00 40.84 3.51
6576 7040 3.265791 GCTCATGGAGAGGTACAAACAG 58.734 50.000 0.00 0.00 44.86 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.