Multiple sequence alignment - TraesCS5D01G466800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G466800 chr5D 100.000 4233 0 0 1 4233 509133684 509137916 0.000000e+00 7817.0
1 TraesCS5D01G466800 chr5D 89.961 1275 65 18 1001 2233 509022491 509021238 0.000000e+00 1587.0
2 TraesCS5D01G466800 chr5D 93.091 275 19 0 2961 3235 509020568 509020294 1.830000e-108 403.0
3 TraesCS5D01G466800 chr5D 89.552 201 21 0 2671 2871 509020830 509020630 5.430000e-64 255.0
4 TraesCS5D01G466800 chr5D 80.952 315 49 8 2542 2850 509023277 509022968 5.470000e-59 239.0
5 TraesCS5D01G466800 chr5D 89.744 78 7 1 3171 3248 509019528 509019452 9.690000e-17 99.0
6 TraesCS5D01G466800 chr5A 93.464 3427 169 27 829 4233 636411490 636414883 0.000000e+00 5036.0
7 TraesCS5D01G466800 chr5A 88.810 1269 88 27 1001 2233 636308174 636306924 0.000000e+00 1507.0
8 TraesCS5D01G466800 chr5A 87.129 505 48 9 1116 1620 636409602 636410089 1.330000e-154 556.0
9 TraesCS5D01G466800 chr5A 82.617 512 57 20 2359 2867 636306771 636306289 1.410000e-114 424.0
10 TraesCS5D01G466800 chr5A 91.007 278 24 1 2971 3248 636306225 636305949 1.440000e-99 374.0
11 TraesCS5D01G466800 chr5A 74.029 747 103 40 2283 3011 636311401 636310728 1.980000e-53 220.0
12 TraesCS5D01G466800 chr5B 91.739 3474 191 42 775 4233 639675447 639678839 0.000000e+00 4737.0
13 TraesCS5D01G466800 chr5B 90.896 692 46 9 1001 1688 639649621 639648943 0.000000e+00 913.0
14 TraesCS5D01G466800 chr5B 82.906 585 53 21 1684 2233 639621582 639621010 2.290000e-132 483.0
15 TraesCS5D01G466800 chr5B 83.178 428 61 10 1 422 376399121 376398699 8.590000e-102 381.0
16 TraesCS5D01G466800 chr5B 90.877 285 24 2 2961 3245 639620358 639620076 8.590000e-102 381.0
17 TraesCS5D01G466800 chr5B 81.859 441 72 8 1 437 538045215 538044779 8.650000e-97 364.0
18 TraesCS5D01G466800 chr5B 89.583 192 17 3 2383 2574 639620882 639620694 1.520000e-59 241.0
19 TraesCS5D01G466800 chr5B 89.773 88 4 3 681 764 529607773 529607859 1.610000e-19 108.0
20 TraesCS5D01G466800 chr7D 87.631 477 55 4 1 474 235375092 235374617 6.190000e-153 551.0
21 TraesCS5D01G466800 chr7D 83.270 263 42 2 2972 3233 88149596 88149857 1.520000e-59 241.0
22 TraesCS5D01G466800 chr7D 87.805 164 20 0 1603 1766 88148401 88148564 4.320000e-45 193.0
23 TraesCS5D01G466800 chr7A 91.582 297 22 1 1210 1506 89833884 89834177 1.420000e-109 407.0
24 TraesCS5D01G466800 chr7A 83.270 263 42 2 2972 3233 89835457 89835718 1.520000e-59 241.0
25 TraesCS5D01G466800 chr7A 87.805 164 20 0 1603 1766 89834258 89834421 4.320000e-45 193.0
26 TraesCS5D01G466800 chr1B 83.409 440 67 6 1 437 600980251 600979815 1.830000e-108 403.0
27 TraesCS5D01G466800 chr1B 82.477 428 66 8 1 425 671525991 671526412 2.400000e-97 366.0
28 TraesCS5D01G466800 chr7B 90.909 297 24 1 1210 1506 37359832 37360125 3.070000e-106 396.0
29 TraesCS5D01G466800 chr7B 77.600 500 83 20 2385 2869 37360834 37361319 4.170000e-70 276.0
30 TraesCS5D01G466800 chr7B 82.890 263 43 2 2972 3233 37091075 37091336 7.080000e-58 235.0
31 TraesCS5D01G466800 chr4D 82.877 438 64 11 1 433 487199955 487199524 2.390000e-102 383.0
32 TraesCS5D01G466800 chr4D 82.326 430 69 5 1 428 37603882 37603458 2.400000e-97 366.0
33 TraesCS5D01G466800 chr4B 82.540 441 69 8 1 437 562615522 562615958 8.590000e-102 381.0
34 TraesCS5D01G466800 chr6B 83.133 415 64 6 1 412 706516853 706517264 1.440000e-99 374.0
35 TraesCS5D01G466800 chr6B 83.019 106 14 4 670 772 422325068 422324964 4.510000e-15 93.5
36 TraesCS5D01G466800 chr6A 84.211 114 11 5 664 772 603185289 603185178 2.080000e-18 104.0
37 TraesCS5D01G466800 chr6A 91.781 73 4 2 697 767 447171813 447171741 2.690000e-17 100.0
38 TraesCS5D01G466800 chr3B 83.486 109 13 3 668 772 78608629 78608736 3.480000e-16 97.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G466800 chr5D 509133684 509137916 4232 False 7817.000000 7817 100.000000 1 4233 1 chr5D.!!$F1 4232
1 TraesCS5D01G466800 chr5D 509019452 509023277 3825 True 516.600000 1587 88.660000 1001 3248 5 chr5D.!!$R1 2247
2 TraesCS5D01G466800 chr5A 636409602 636414883 5281 False 2796.000000 5036 90.296500 829 4233 2 chr5A.!!$F1 3404
3 TraesCS5D01G466800 chr5A 636305949 636311401 5452 True 631.250000 1507 84.115750 1001 3248 4 chr5A.!!$R1 2247
4 TraesCS5D01G466800 chr5B 639675447 639678839 3392 False 4737.000000 4737 91.739000 775 4233 1 chr5B.!!$F2 3458
5 TraesCS5D01G466800 chr5B 639648943 639649621 678 True 913.000000 913 90.896000 1001 1688 1 chr5B.!!$R3 687
6 TraesCS5D01G466800 chr5B 639620076 639621582 1506 True 368.333333 483 87.788667 1684 3245 3 chr5B.!!$R4 1561
7 TraesCS5D01G466800 chr7D 88148401 88149857 1456 False 217.000000 241 85.537500 1603 3233 2 chr7D.!!$F1 1630
8 TraesCS5D01G466800 chr7A 89833884 89835718 1834 False 280.333333 407 87.552333 1210 3233 3 chr7A.!!$F1 2023
9 TraesCS5D01G466800 chr7B 37359832 37361319 1487 False 336.000000 396 84.254500 1210 2869 2 chr7B.!!$F2 1659

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
325 326 0.037697 GTTTCCAAATCCGCCCCAAC 60.038 55.0 0.0 0.0 0.00 3.77 F
514 515 0.109597 GACATGGCAGTTTTCCAGCG 60.110 55.0 0.0 0.0 36.98 5.18 F
652 653 0.249531 TTACAAGCCAACGAGCACGA 60.250 50.0 11.4 0.0 42.66 4.35 F
2139 4537 0.389166 GATGAAGATAGCGGAGGCGG 60.389 60.0 0.0 0.0 46.35 6.13 F
2926 5528 0.038166 GGATGCCTGGAACACCTGAA 59.962 55.0 0.0 0.0 0.00 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1584 3889 0.095935 CACGCGCAATTCAGAGAAGG 59.904 55.000 5.73 0.00 0.00 3.46 R
2139 4537 0.319641 GACAGGAACCCGGCGATATC 60.320 60.000 9.30 2.51 0.00 1.63 R
2377 4913 1.349357 AGGCGGCTTCTTCTTCTTCTT 59.651 47.619 5.25 0.00 0.00 2.52 R
3100 5702 1.371183 CACCACCGATGTCACCAGT 59.629 57.895 0.00 0.00 0.00 4.00 R
3892 6624 2.281484 ACACGAATGCTGCGGGTT 60.281 55.556 0.00 0.00 43.89 4.11 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 0.366871 CGTTGAACGAATCAGAGCGG 59.633 55.000 13.13 0.00 46.05 5.52
23 24 2.125106 AACGAATCAGAGCGGGGC 60.125 61.111 0.00 0.00 0.00 5.80
24 25 2.852495 GAACGAATCAGAGCGGGGCA 62.852 60.000 0.00 0.00 0.00 5.36
25 26 2.125147 CGAATCAGAGCGGGGCAA 60.125 61.111 0.00 0.00 0.00 4.52
27 28 1.377202 GAATCAGAGCGGGGCAACA 60.377 57.895 0.00 0.00 39.74 3.33
28 29 1.648467 GAATCAGAGCGGGGCAACAC 61.648 60.000 0.00 0.00 39.74 3.32
29 30 3.628646 ATCAGAGCGGGGCAACACC 62.629 63.158 0.00 0.00 35.43 4.16
39 40 1.747745 GGCAACACCCGGACATACC 60.748 63.158 0.73 0.00 0.00 2.73
40 41 1.003112 GCAACACCCGGACATACCA 60.003 57.895 0.73 0.00 38.90 3.25
41 42 0.393808 GCAACACCCGGACATACCAT 60.394 55.000 0.73 0.00 38.90 3.55
44 45 0.685131 ACACCCGGACATACCATCGA 60.685 55.000 0.73 0.00 38.90 3.59
46 47 0.462789 ACCCGGACATACCATCGAAC 59.537 55.000 0.73 0.00 38.90 3.95
47 48 0.750850 CCCGGACATACCATCGAACT 59.249 55.000 0.73 0.00 38.90 3.01
48 49 1.269621 CCCGGACATACCATCGAACTC 60.270 57.143 0.73 0.00 38.90 3.01
50 51 2.159156 CCGGACATACCATCGAACTCAA 60.159 50.000 0.00 0.00 38.90 3.02
52 53 4.261867 CCGGACATACCATCGAACTCAATA 60.262 45.833 0.00 0.00 38.90 1.90
56 57 5.470368 ACATACCATCGAACTCAATATCCG 58.530 41.667 0.00 0.00 0.00 4.18
58 59 2.069273 CCATCGAACTCAATATCCGGC 58.931 52.381 0.00 0.00 0.00 6.13
60 61 3.329386 CATCGAACTCAATATCCGGCAT 58.671 45.455 0.00 0.00 0.00 4.40
61 62 3.026630 TCGAACTCAATATCCGGCATC 57.973 47.619 0.00 0.00 0.00 3.91
62 63 2.069273 CGAACTCAATATCCGGCATCC 58.931 52.381 0.00 0.00 0.00 3.51
64 65 0.693049 ACTCAATATCCGGCATCCCC 59.307 55.000 0.00 0.00 0.00 4.81
73 74 3.845259 GGCATCCCCGCACGACTA 61.845 66.667 0.00 0.00 0.00 2.59
74 75 2.185867 GCATCCCCGCACGACTAA 59.814 61.111 0.00 0.00 0.00 2.24
75 76 1.448893 GCATCCCCGCACGACTAAA 60.449 57.895 0.00 0.00 0.00 1.85
76 77 1.702491 GCATCCCCGCACGACTAAAC 61.702 60.000 0.00 0.00 0.00 2.01
79 80 2.048877 CCCGCACGACTAAACGGT 60.049 61.111 0.00 0.00 44.14 4.83
80 81 2.090524 CCCGCACGACTAAACGGTC 61.091 63.158 0.00 0.00 44.14 4.79
91 92 2.629617 ACTAAACGGTCGAAGGAGGAAA 59.370 45.455 0.00 0.00 0.00 3.13
92 93 1.875009 AAACGGTCGAAGGAGGAAAC 58.125 50.000 0.00 0.00 0.00 2.78
94 95 0.754472 ACGGTCGAAGGAGGAAACAA 59.246 50.000 0.00 0.00 0.00 2.83
95 96 1.346722 ACGGTCGAAGGAGGAAACAAT 59.653 47.619 0.00 0.00 0.00 2.71
97 98 2.928116 CGGTCGAAGGAGGAAACAATAC 59.072 50.000 0.00 0.00 0.00 1.89
99 100 3.055312 GGTCGAAGGAGGAAACAATACCT 60.055 47.826 0.00 0.00 39.41 3.08
103 104 1.992557 AGGAGGAAACAATACCTGCCA 59.007 47.619 0.00 0.00 43.91 4.92
105 106 3.785887 AGGAGGAAACAATACCTGCCATA 59.214 43.478 0.00 0.00 43.91 2.74
107 108 4.523083 GAGGAAACAATACCTGCCATACA 58.477 43.478 0.00 0.00 36.57 2.29
108 109 4.270008 AGGAAACAATACCTGCCATACAC 58.730 43.478 0.00 0.00 34.99 2.90
109 110 3.064820 GGAAACAATACCTGCCATACACG 59.935 47.826 0.00 0.00 0.00 4.49
111 112 3.620427 ACAATACCTGCCATACACGAA 57.380 42.857 0.00 0.00 0.00 3.85
112 113 4.150897 ACAATACCTGCCATACACGAAT 57.849 40.909 0.00 0.00 0.00 3.34
114 115 4.126437 CAATACCTGCCATACACGAATCA 58.874 43.478 0.00 0.00 0.00 2.57
115 116 2.024176 ACCTGCCATACACGAATCAC 57.976 50.000 0.00 0.00 0.00 3.06
118 119 2.267426 CTGCCATACACGAATCACGAA 58.733 47.619 0.00 0.00 45.77 3.85
119 120 2.267426 TGCCATACACGAATCACGAAG 58.733 47.619 0.00 0.00 45.77 3.79
120 121 1.004927 GCCATACACGAATCACGAAGC 60.005 52.381 0.00 0.00 45.77 3.86
124 125 1.291877 ACACGAATCACGAAGCCAGC 61.292 55.000 0.00 0.00 45.77 4.85
125 126 1.005037 ACGAATCACGAAGCCAGCA 60.005 52.632 0.00 0.00 45.77 4.41
126 127 1.291877 ACGAATCACGAAGCCAGCAC 61.292 55.000 0.00 0.00 45.77 4.40
127 128 1.291184 CGAATCACGAAGCCAGCACA 61.291 55.000 0.00 0.00 45.77 4.57
129 130 1.568612 AATCACGAAGCCAGCACACG 61.569 55.000 0.00 0.00 0.00 4.49
131 132 2.029288 CACGAAGCCAGCACACGAT 61.029 57.895 9.30 0.00 0.00 3.73
132 133 1.738099 ACGAAGCCAGCACACGATC 60.738 57.895 9.30 0.00 0.00 3.69
133 134 2.456119 CGAAGCCAGCACACGATCC 61.456 63.158 0.00 0.00 0.00 3.36
134 135 1.375908 GAAGCCAGCACACGATCCA 60.376 57.895 0.00 0.00 0.00 3.41
135 136 0.745845 GAAGCCAGCACACGATCCAT 60.746 55.000 0.00 0.00 0.00 3.41
136 137 0.745845 AAGCCAGCACACGATCCATC 60.746 55.000 0.00 0.00 0.00 3.51
137 138 1.450134 GCCAGCACACGATCCATCA 60.450 57.895 0.00 0.00 0.00 3.07
138 139 0.816825 GCCAGCACACGATCCATCAT 60.817 55.000 0.00 0.00 0.00 2.45
140 141 1.202615 CCAGCACACGATCCATCATCT 60.203 52.381 0.00 0.00 0.00 2.90
142 143 2.543012 CAGCACACGATCCATCATCTTC 59.457 50.000 0.00 0.00 0.00 2.87
144 145 2.742856 GCACACGATCCATCATCTTCCA 60.743 50.000 0.00 0.00 0.00 3.53
146 147 3.033909 ACACGATCCATCATCTTCCAGA 58.966 45.455 0.00 0.00 0.00 3.86
147 148 3.645212 ACACGATCCATCATCTTCCAGAT 59.355 43.478 0.00 0.00 34.74 2.90
154 155 2.598045 CATCTTCCAGATGCCGTCG 58.402 57.895 0.84 0.00 44.69 5.12
155 156 0.103026 CATCTTCCAGATGCCGTCGA 59.897 55.000 0.84 0.00 44.69 4.20
156 157 1.043816 ATCTTCCAGATGCCGTCGAT 58.956 50.000 0.00 0.00 32.80 3.59
158 159 1.493950 CTTCCAGATGCCGTCGATGC 61.494 60.000 0.00 0.54 0.00 3.91
161 162 1.227060 CAGATGCCGTCGATGCAGA 60.227 57.895 16.19 0.00 42.92 4.26
163 164 2.202932 ATGCCGTCGATGCAGACC 60.203 61.111 16.19 0.00 42.92 3.85
164 165 2.906182 GATGCCGTCGATGCAGACCA 62.906 60.000 16.19 1.81 42.92 4.02
166 167 2.261361 CCGTCGATGCAGACCACA 59.739 61.111 0.00 0.00 37.85 4.17
167 168 1.374125 CCGTCGATGCAGACCACAA 60.374 57.895 0.00 0.00 37.85 3.33
168 169 0.740868 CCGTCGATGCAGACCACAAT 60.741 55.000 0.00 0.00 37.85 2.71
170 171 1.737029 CGTCGATGCAGACCACAATCT 60.737 52.381 0.00 0.00 37.85 2.40
172 173 1.276138 TCGATGCAGACCACAATCTGT 59.724 47.619 4.80 0.00 46.65 3.41
176 177 3.266510 TGCAGACCACAATCTGTATCC 57.733 47.619 4.80 0.00 46.65 2.59
178 179 2.205074 CAGACCACAATCTGTATCCGC 58.795 52.381 0.00 0.00 41.12 5.54
179 180 2.111384 AGACCACAATCTGTATCCGCT 58.889 47.619 0.00 0.00 0.00 5.52
180 181 2.101582 AGACCACAATCTGTATCCGCTC 59.898 50.000 0.00 0.00 0.00 5.03
181 182 1.139058 ACCACAATCTGTATCCGCTCC 59.861 52.381 0.00 0.00 0.00 4.70
182 183 1.414181 CCACAATCTGTATCCGCTCCT 59.586 52.381 0.00 0.00 0.00 3.69
183 184 2.477825 CACAATCTGTATCCGCTCCTG 58.522 52.381 0.00 0.00 0.00 3.86
185 186 1.688735 CAATCTGTATCCGCTCCTGGA 59.311 52.381 0.00 0.00 43.58 3.86
186 187 1.333177 ATCTGTATCCGCTCCTGGAC 58.667 55.000 0.00 0.00 41.85 4.02
191 192 0.851469 TATCCGCTCCTGGACTACCT 59.149 55.000 0.00 0.00 41.85 3.08
194 195 2.128507 CGCTCCTGGACTACCTCCC 61.129 68.421 0.00 0.00 38.49 4.30
195 196 1.001760 GCTCCTGGACTACCTCCCA 59.998 63.158 0.00 0.00 38.49 4.37
197 198 1.001760 TCCTGGACTACCTCCCAGC 59.998 63.158 0.00 0.00 46.52 4.85
199 200 1.002274 CTGGACTACCTCCCAGCCT 59.998 63.158 0.00 0.00 42.84 4.58
202 203 2.042843 ACTACCTCCCAGCCTCCG 60.043 66.667 0.00 0.00 0.00 4.63
221 222 3.747976 GCCGGCGTTGGAGCAAAT 61.748 61.111 12.58 0.00 39.27 2.32
222 223 2.179018 CCGGCGTTGGAGCAAATG 59.821 61.111 6.01 0.00 39.27 2.32
225 226 2.504681 GCGTTGGAGCAAATGCCG 60.505 61.111 0.94 0.00 43.38 5.69
227 228 1.154225 CGTTGGAGCAAATGCCGTC 60.154 57.895 0.94 0.00 43.38 4.79
228 229 1.577328 CGTTGGAGCAAATGCCGTCT 61.577 55.000 0.94 0.00 43.38 4.18
230 231 0.250684 TTGGAGCAAATGCCGTCTCA 60.251 50.000 0.94 0.00 43.38 3.27
231 232 0.250684 TGGAGCAAATGCCGTCTCAA 60.251 50.000 0.94 0.00 43.38 3.02
252 253 4.473643 CGAAGCCCAAGGACACAA 57.526 55.556 0.00 0.00 0.00 3.33
254 255 0.535102 CGAAGCCCAAGGACACAAGT 60.535 55.000 0.00 0.00 0.00 3.16
255 256 1.239347 GAAGCCCAAGGACACAAGTC 58.761 55.000 0.00 0.00 44.21 3.01
266 267 1.347707 GACACAAGTCCACCATGAGGA 59.652 52.381 0.00 0.00 38.89 3.71
267 268 1.988107 ACACAAGTCCACCATGAGGAT 59.012 47.619 9.64 0.00 37.52 3.24
271 272 0.545171 AGTCCACCATGAGGATGCTG 59.455 55.000 9.64 0.00 37.52 4.41
272 273 1.099879 GTCCACCATGAGGATGCTGC 61.100 60.000 9.64 0.00 37.52 5.25
274 275 2.184830 CACCATGAGGATGCTGCCG 61.185 63.158 0.00 0.00 38.69 5.69
275 276 3.285215 CCATGAGGATGCTGCCGC 61.285 66.667 0.00 0.00 36.89 6.53
276 277 3.285215 CATGAGGATGCTGCCGCC 61.285 66.667 0.00 0.00 34.43 6.13
277 278 4.923942 ATGAGGATGCTGCCGCCG 62.924 66.667 0.00 0.00 34.43 6.46
292 293 3.751246 CCGCCACATGCACCCTTG 61.751 66.667 0.00 0.00 41.33 3.61
303 304 0.249447 GCACCCTTGCTTGAACAACC 60.249 55.000 0.00 0.00 46.17 3.77
304 305 1.402787 CACCCTTGCTTGAACAACCT 58.597 50.000 0.00 0.00 0.00 3.50
311 312 4.261614 CCTTGCTTGAACAACCTAGTTTCC 60.262 45.833 0.00 0.00 0.00 3.13
313 314 4.274147 TGCTTGAACAACCTAGTTTCCAA 58.726 39.130 0.00 0.00 0.00 3.53
314 315 4.707448 TGCTTGAACAACCTAGTTTCCAAA 59.293 37.500 0.00 0.00 0.00 3.28
315 316 5.362430 TGCTTGAACAACCTAGTTTCCAAAT 59.638 36.000 0.00 0.00 0.00 2.32
318 319 4.517453 TGAACAACCTAGTTTCCAAATCCG 59.483 41.667 0.00 0.00 0.00 4.18
323 324 0.699399 TAGTTTCCAAATCCGCCCCA 59.301 50.000 0.00 0.00 0.00 4.96
325 326 0.037697 GTTTCCAAATCCGCCCCAAC 60.038 55.000 0.00 0.00 0.00 3.77
327 328 2.283532 CCAAATCCGCCCCAACCA 60.284 61.111 0.00 0.00 0.00 3.67
328 329 1.685421 CCAAATCCGCCCCAACCAT 60.685 57.895 0.00 0.00 0.00 3.55
329 330 0.396417 CCAAATCCGCCCCAACCATA 60.396 55.000 0.00 0.00 0.00 2.74
331 332 1.340889 CAAATCCGCCCCAACCATATG 59.659 52.381 0.00 0.00 0.00 1.78
332 333 0.850100 AATCCGCCCCAACCATATGA 59.150 50.000 3.65 0.00 0.00 2.15
333 334 0.110486 ATCCGCCCCAACCATATGAC 59.890 55.000 3.65 0.00 0.00 3.06
334 335 1.891919 CCGCCCCAACCATATGACG 60.892 63.158 3.65 0.00 0.00 4.35
336 337 1.529796 GCCCCAACCATATGACGGA 59.470 57.895 3.65 0.00 0.00 4.69
337 338 0.110486 GCCCCAACCATATGACGGAT 59.890 55.000 3.65 0.00 0.00 4.18
338 339 1.478654 GCCCCAACCATATGACGGATT 60.479 52.381 3.65 0.00 0.00 3.01
342 343 2.575532 CAACCATATGACGGATTGCCT 58.424 47.619 3.65 0.00 0.00 4.75
345 346 1.432514 CATATGACGGATTGCCTCGG 58.567 55.000 0.00 0.00 0.00 4.63
346 347 1.048601 ATATGACGGATTGCCTCGGT 58.951 50.000 0.00 0.00 39.88 4.69
348 349 0.744414 ATGACGGATTGCCTCGGTTG 60.744 55.000 0.00 0.00 37.53 3.77
349 350 2.046314 ACGGATTGCCTCGGTTGG 60.046 61.111 0.00 0.00 33.99 3.77
355 356 1.497309 ATTGCCTCGGTTGGGAAGGA 61.497 55.000 0.00 0.00 40.65 3.36
358 359 1.627297 GCCTCGGTTGGGAAGGATCT 61.627 60.000 0.00 0.00 0.00 2.75
359 360 0.179000 CCTCGGTTGGGAAGGATCTG 59.821 60.000 0.00 0.00 0.00 2.90
360 361 1.195115 CTCGGTTGGGAAGGATCTGA 58.805 55.000 0.00 0.00 0.00 3.27
362 363 1.982226 TCGGTTGGGAAGGATCTGAAA 59.018 47.619 0.00 0.00 0.00 2.69
364 365 2.290323 CGGTTGGGAAGGATCTGAAACT 60.290 50.000 0.00 0.00 0.00 2.66
367 368 4.507512 GGTTGGGAAGGATCTGAAACTTCT 60.508 45.833 18.15 0.00 40.25 2.85
368 369 5.073428 GTTGGGAAGGATCTGAAACTTCTT 58.927 41.667 18.15 0.00 40.25 2.52
370 371 6.448369 TGGGAAGGATCTGAAACTTCTTTA 57.552 37.500 18.15 7.68 40.25 1.85
371 372 7.032598 TGGGAAGGATCTGAAACTTCTTTAT 57.967 36.000 18.15 0.00 40.25 1.40
372 373 7.470192 TGGGAAGGATCTGAAACTTCTTTATT 58.530 34.615 18.15 0.00 40.25 1.40
374 375 7.611855 GGGAAGGATCTGAAACTTCTTTATTCA 59.388 37.037 18.15 0.00 40.25 2.57
380 381 3.120338 TGAAACTTCTTTATTCAGCGGCG 60.120 43.478 0.51 0.51 0.00 6.46
383 384 0.675208 TTCTTTATTCAGCGGCGCCA 60.675 50.000 30.40 13.40 0.00 5.69
385 386 0.381801 CTTTATTCAGCGGCGCCATT 59.618 50.000 30.40 11.05 0.00 3.16
406 407 3.972276 GCCGCCGAAGCCAAAACA 61.972 61.111 0.00 0.00 34.57 2.83
409 410 1.008361 CCGCCGAAGCCAAAACAATG 61.008 55.000 0.00 0.00 34.57 2.82
411 412 1.601663 CGCCGAAGCCAAAACAATGAA 60.602 47.619 0.00 0.00 34.57 2.57
412 413 2.061028 GCCGAAGCCAAAACAATGAAG 58.939 47.619 0.00 0.00 0.00 3.02
414 415 2.295909 CCGAAGCCAAAACAATGAAGGA 59.704 45.455 0.00 0.00 0.00 3.36
415 416 3.056607 CCGAAGCCAAAACAATGAAGGAT 60.057 43.478 0.00 0.00 0.00 3.24
421 422 5.062528 GCCAAAACAATGAAGGATCCAAAA 58.937 37.500 15.82 0.00 0.00 2.44
422 423 5.530543 GCCAAAACAATGAAGGATCCAAAAA 59.469 36.000 15.82 0.00 0.00 1.94
461 462 6.657541 GGTCTAACCTAAAACAACATGATCCA 59.342 38.462 0.00 0.00 34.73 3.41
463 464 7.174253 GTCTAACCTAAAACAACATGATCCACA 59.826 37.037 0.00 0.00 0.00 4.17
464 465 5.705609 ACCTAAAACAACATGATCCACAC 57.294 39.130 0.00 0.00 0.00 3.82
466 467 5.009610 ACCTAAAACAACATGATCCACACAC 59.990 40.000 0.00 0.00 0.00 3.82
467 468 3.624326 AAACAACATGATCCACACACG 57.376 42.857 0.00 0.00 0.00 4.49
469 470 3.394674 ACAACATGATCCACACACGTA 57.605 42.857 0.00 0.00 0.00 3.57
470 471 3.325870 ACAACATGATCCACACACGTAG 58.674 45.455 0.00 0.00 0.00 3.51
472 473 4.183865 CAACATGATCCACACACGTAGAT 58.816 43.478 0.00 0.00 0.00 1.98
478 479 1.544246 TCCACACACGTAGATCTGGTG 59.456 52.381 20.78 20.78 37.67 4.17
480 481 2.416027 CCACACACGTAGATCTGGTGAG 60.416 54.545 26.22 22.01 35.68 3.51
482 483 2.750166 ACACACGTAGATCTGGTGAGAG 59.250 50.000 26.22 19.06 35.68 3.20
486 487 3.942115 CACGTAGATCTGGTGAGAGAGAA 59.058 47.826 18.76 0.00 33.58 2.87
489 490 5.477291 ACGTAGATCTGGTGAGAGAGAAAAA 59.523 40.000 5.18 0.00 0.00 1.94
490 491 6.153680 ACGTAGATCTGGTGAGAGAGAAAAAT 59.846 38.462 5.18 0.00 0.00 1.82
492 493 7.860373 CGTAGATCTGGTGAGAGAGAAAAATAG 59.140 40.741 5.18 0.00 0.00 1.73
493 494 6.581712 AGATCTGGTGAGAGAGAAAAATAGC 58.418 40.000 0.00 0.00 0.00 2.97
494 495 6.383726 AGATCTGGTGAGAGAGAAAAATAGCT 59.616 38.462 0.00 0.00 0.00 3.32
495 496 5.728471 TCTGGTGAGAGAGAAAAATAGCTG 58.272 41.667 0.00 0.00 0.00 4.24
499 500 6.112058 GGTGAGAGAGAAAAATAGCTGACAT 58.888 40.000 0.00 0.00 0.00 3.06
502 503 4.880696 AGAGAGAAAAATAGCTGACATGGC 59.119 41.667 0.00 0.00 0.00 4.40
505 506 4.338879 AGAAAAATAGCTGACATGGCAGT 58.661 39.130 29.02 17.90 38.17 4.40
508 509 5.473066 AAAATAGCTGACATGGCAGTTTT 57.527 34.783 29.02 22.83 38.17 2.43
509 510 4.708726 AATAGCTGACATGGCAGTTTTC 57.291 40.909 29.02 12.88 38.17 2.29
512 513 1.068055 GCTGACATGGCAGTTTTCCAG 60.068 52.381 29.02 2.90 38.17 3.86
514 515 0.109597 GACATGGCAGTTTTCCAGCG 60.110 55.000 0.00 0.00 36.98 5.18
516 517 0.314935 CATGGCAGTTTTCCAGCGTT 59.685 50.000 0.00 0.00 36.98 4.84
530 531 1.060308 GCGTTTCGCGTACATGCAT 59.940 52.632 5.77 0.00 44.55 3.96
533 534 1.849829 CGTTTCGCGTACATGCATCTA 59.150 47.619 5.77 0.00 35.54 1.98
534 535 2.471370 CGTTTCGCGTACATGCATCTAT 59.529 45.455 5.77 0.00 35.54 1.98
540 541 2.926200 GCGTACATGCATCTATAGCCAG 59.074 50.000 0.00 0.00 34.15 4.85
541 542 3.515630 CGTACATGCATCTATAGCCAGG 58.484 50.000 0.00 0.00 0.00 4.45
544 545 3.246301 ACATGCATCTATAGCCAGGACT 58.754 45.455 0.00 0.00 0.00 3.85
546 547 5.028802 ACATGCATCTATAGCCAGGACTAT 58.971 41.667 0.00 0.00 36.77 2.12
550 551 4.274147 CATCTATAGCCAGGACTATCCGT 58.726 47.826 6.67 0.00 42.75 4.69
552 553 5.509832 TCTATAGCCAGGACTATCCGTTA 57.490 43.478 6.67 0.00 42.75 3.18
553 554 5.251764 TCTATAGCCAGGACTATCCGTTAC 58.748 45.833 6.67 0.00 42.75 2.50
554 555 1.030457 AGCCAGGACTATCCGTTACG 58.970 55.000 0.00 0.00 42.75 3.18
555 556 0.743097 GCCAGGACTATCCGTTACGT 59.257 55.000 3.52 0.00 42.75 3.57
557 558 2.555757 GCCAGGACTATCCGTTACGTAT 59.444 50.000 3.52 0.00 42.75 3.06
558 559 3.005155 GCCAGGACTATCCGTTACGTATT 59.995 47.826 3.52 0.00 42.75 1.89
559 560 4.500375 GCCAGGACTATCCGTTACGTATTT 60.500 45.833 3.52 0.00 42.75 1.40
560 561 5.594926 CCAGGACTATCCGTTACGTATTTT 58.405 41.667 3.52 0.00 42.75 1.82
561 562 6.044682 CCAGGACTATCCGTTACGTATTTTT 58.955 40.000 3.52 0.00 42.75 1.94
594 595 2.478134 GCATGAGAGCGTATCAATCCAC 59.522 50.000 0.00 0.00 0.00 4.02
595 596 3.801638 GCATGAGAGCGTATCAATCCACT 60.802 47.826 0.00 0.00 0.00 4.00
598 599 6.625960 GCATGAGAGCGTATCAATCCACTATA 60.626 42.308 0.00 0.00 0.00 1.31
599 600 6.502136 TGAGAGCGTATCAATCCACTATAG 57.498 41.667 0.00 0.00 0.00 1.31
600 601 6.004574 TGAGAGCGTATCAATCCACTATAGT 58.995 40.000 0.00 0.00 0.00 2.12
602 603 5.770663 AGAGCGTATCAATCCACTATAGTGT 59.229 40.000 27.07 13.01 44.21 3.55
605 606 6.701841 AGCGTATCAATCCACTATAGTGTTTG 59.298 38.462 27.07 26.17 44.21 2.93
606 607 6.700081 GCGTATCAATCCACTATAGTGTTTGA 59.300 38.462 30.67 30.67 43.66 2.69
607 608 7.096023 GCGTATCAATCCACTATAGTGTTTGAG 60.096 40.741 31.19 24.51 43.23 3.02
609 610 9.817809 GTATCAATCCACTATAGTGTTTGAGAA 57.182 33.333 31.19 24.63 43.23 2.87
611 612 7.907389 TCAATCCACTATAGTGTTTGAGAACT 58.093 34.615 27.85 12.60 44.21 3.01
612 613 7.819415 TCAATCCACTATAGTGTTTGAGAACTG 59.181 37.037 27.85 19.53 44.21 3.16
613 614 6.665992 TCCACTATAGTGTTTGAGAACTGT 57.334 37.500 27.07 0.00 44.21 3.55
614 615 7.770366 TCCACTATAGTGTTTGAGAACTGTA 57.230 36.000 27.07 0.00 44.21 2.74
615 616 8.362464 TCCACTATAGTGTTTGAGAACTGTAT 57.638 34.615 27.07 0.00 44.21 2.29
626 627 7.120579 TGTTTGAGAACTGTATTGAAACACTGT 59.879 33.333 0.00 0.00 36.70 3.55
627 628 6.603237 TGAGAACTGTATTGAAACACTGTG 57.397 37.500 6.19 6.19 0.00 3.66
640 641 3.668596 ACACTGTGTTTCGTTACAAGC 57.331 42.857 7.80 0.00 0.00 4.01
641 642 2.353579 ACACTGTGTTTCGTTACAAGCC 59.646 45.455 7.80 0.00 0.00 4.35
644 645 3.181504 ACTGTGTTTCGTTACAAGCCAAC 60.182 43.478 0.00 0.00 0.00 3.77
652 653 0.249531 TTACAAGCCAACGAGCACGA 60.250 50.000 11.40 0.00 42.66 4.35
655 656 1.005037 AAGCCAACGAGCACGATGA 60.005 52.632 14.91 0.00 43.20 2.92
656 657 1.291877 AAGCCAACGAGCACGATGAC 61.292 55.000 14.91 3.65 43.20 3.06
657 658 1.738099 GCCAACGAGCACGATGACT 60.738 57.895 14.91 0.00 43.20 3.41
661 662 2.092211 CCAACGAGCACGATGACTAAAC 59.908 50.000 14.91 0.00 43.20 2.01
667 668 4.561213 CGAGCACGATGACTAAACATTGTA 59.439 41.667 0.00 0.00 41.30 2.41
668 669 5.275927 CGAGCACGATGACTAAACATTGTAG 60.276 44.000 0.00 0.00 41.30 2.74
669 670 5.479306 AGCACGATGACTAAACATTGTAGT 58.521 37.500 0.00 0.00 41.30 2.73
670 671 6.627243 AGCACGATGACTAAACATTGTAGTA 58.373 36.000 0.00 0.00 41.30 1.82
672 673 6.530534 GCACGATGACTAAACATTGTAGTACT 59.469 38.462 0.00 0.00 41.30 2.73
673 674 7.253684 GCACGATGACTAAACATTGTAGTACTC 60.254 40.741 0.00 0.00 41.30 2.59
674 675 7.220300 CACGATGACTAAACATTGTAGTACTCC 59.780 40.741 0.00 0.00 41.30 3.85
675 676 7.122353 ACGATGACTAAACATTGTAGTACTCCT 59.878 37.037 0.00 0.00 41.39 3.69
679 680 7.811236 TGACTAAACATTGTAGTACTCCTTTCG 59.189 37.037 0.00 0.00 31.88 3.46
680 681 7.664758 ACTAAACATTGTAGTACTCCTTTCGT 58.335 34.615 0.00 0.00 29.89 3.85
684 685 5.924825 ACATTGTAGTACTCCTTTCGTTCAC 59.075 40.000 0.00 0.00 0.00 3.18
685 686 5.779529 TTGTAGTACTCCTTTCGTTCACT 57.220 39.130 0.00 0.00 0.00 3.41
687 688 6.152932 TGTAGTACTCCTTTCGTTCACTTT 57.847 37.500 0.00 0.00 0.00 2.66
690 691 5.425630 AGTACTCCTTTCGTTCACTTTTGT 58.574 37.500 0.00 0.00 0.00 2.83
691 692 6.576185 AGTACTCCTTTCGTTCACTTTTGTA 58.424 36.000 0.00 0.00 0.00 2.41
693 694 5.180271 ACTCCTTTCGTTCACTTTTGTACA 58.820 37.500 0.00 0.00 0.00 2.90
696 697 5.064198 TCCTTTCGTTCACTTTTGTACACTG 59.936 40.000 0.00 0.00 0.00 3.66
697 698 5.163794 CCTTTCGTTCACTTTTGTACACTGT 60.164 40.000 0.00 0.00 0.00 3.55
698 699 5.866335 TTCGTTCACTTTTGTACACTGTT 57.134 34.783 0.00 0.00 0.00 3.16
699 700 5.866335 TCGTTCACTTTTGTACACTGTTT 57.134 34.783 0.00 0.00 0.00 2.83
702 703 6.812656 TCGTTCACTTTTGTACACTGTTTAGA 59.187 34.615 0.00 0.00 0.00 2.10
734 735 9.665719 AAGACAACATCCAAAACAGTTTAATTT 57.334 25.926 0.00 0.00 0.00 1.82
736 737 9.092876 GACAACATCCAAAACAGTTTAATTTCA 57.907 29.630 0.00 0.00 0.00 2.69
737 738 9.097257 ACAACATCCAAAACAGTTTAATTTCAG 57.903 29.630 0.00 0.00 0.00 3.02
739 740 7.500141 ACATCCAAAACAGTTTAATTTCAGCT 58.500 30.769 0.00 0.00 0.00 4.24
740 741 7.439056 ACATCCAAAACAGTTTAATTTCAGCTG 59.561 33.333 7.63 7.63 0.00 4.24
742 743 6.978080 TCCAAAACAGTTTAATTTCAGCTGTC 59.022 34.615 14.67 0.00 39.19 3.51
745 746 9.515020 CAAAACAGTTTAATTTCAGCTGTCTAA 57.485 29.630 14.67 7.33 39.19 2.10
748 749 9.516314 AACAGTTTAATTTCAGCTGTCTAAAAC 57.484 29.630 14.67 16.96 39.19 2.43
749 750 8.903820 ACAGTTTAATTTCAGCTGTCTAAAACT 58.096 29.630 14.67 18.63 35.78 2.66
773 774 1.156736 AAAAGTGAACGGATGGAGCG 58.843 50.000 0.00 0.00 0.00 5.03
788 789 5.106673 GGATGGAGCGGTAGTATAATTTTGC 60.107 44.000 0.00 0.00 0.00 3.68
826 827 3.938963 TCACTATTCCATTTGCTTCGGAC 59.061 43.478 0.00 0.00 0.00 4.79
953 2023 2.281761 CACTCCCCACAGCCACAC 60.282 66.667 0.00 0.00 0.00 3.82
954 2024 2.772191 ACTCCCCACAGCCACACA 60.772 61.111 0.00 0.00 0.00 3.72
1584 3889 4.632251 ACCAAAACCAAAACCGAAATGTTC 59.368 37.500 0.00 0.00 0.00 3.18
1702 4015 4.373116 GCCGACGAGGAGCACCAA 62.373 66.667 2.07 0.00 45.00 3.67
1818 4141 1.134788 GGTACACATCCTCAACCTCGG 60.135 57.143 0.00 0.00 0.00 4.63
1840 4163 0.973496 TCCATATATGCGGGCGGCTA 60.973 55.000 18.19 8.36 44.05 3.93
1961 4295 1.610086 CAAGGGGCTGATGGGCAAA 60.610 57.895 0.00 0.00 42.84 3.68
1997 4331 2.830514 CCCCGGAAGATAAGCCCCC 61.831 68.421 0.73 0.00 0.00 5.40
2131 4529 3.137533 GGCCAGTGAAGATGAAGATAGC 58.862 50.000 0.00 0.00 0.00 2.97
2139 4537 0.389166 GATGAAGATAGCGGAGGCGG 60.389 60.000 0.00 0.00 46.35 6.13
2241 4755 3.157881 CTCCCAAAAGAGGAAAAGGGAC 58.842 50.000 0.00 0.00 40.26 4.46
2275 4789 3.940209 TTGATTGGGCAGACACATTTC 57.060 42.857 0.00 0.00 0.00 2.17
2321 4853 3.257127 ACTTGTAGCACTTCAGAGGAGAC 59.743 47.826 0.00 0.00 0.00 3.36
2331 4863 1.132849 TCAGAGGAGACCAAACAGGGA 60.133 52.381 0.00 0.00 43.89 4.20
2346 4878 3.403038 ACAGGGATTGTTCAGAAGTTCG 58.597 45.455 0.00 0.00 36.31 3.95
2370 4902 2.997986 GTTCATGCTTTGATTTGGGCAG 59.002 45.455 0.00 0.00 38.11 4.85
2372 4904 1.551430 CATGCTTTGATTTGGGCAGGA 59.449 47.619 0.00 0.00 38.50 3.86
2374 4906 1.203038 TGCTTTGATTTGGGCAGGAGA 60.203 47.619 0.00 0.00 0.00 3.71
2377 4913 3.424703 CTTTGATTTGGGCAGGAGAAGA 58.575 45.455 0.00 0.00 0.00 2.87
2606 5159 1.396301 CAAGCTCGGTGATTCTGAAGC 59.604 52.381 0.00 0.00 0.00 3.86
2608 5161 1.005340 GCTCGGTGATTCTGAAGCTG 58.995 55.000 7.22 0.34 0.00 4.24
2612 5165 2.300152 TCGGTGATTCTGAAGCTGAAGT 59.700 45.455 7.22 0.00 0.00 3.01
2613 5166 3.070018 CGGTGATTCTGAAGCTGAAGTT 58.930 45.455 7.22 0.00 0.00 2.66
2616 5169 4.153835 GGTGATTCTGAAGCTGAAGTTCTG 59.846 45.833 7.22 4.85 0.00 3.02
2617 5170 4.993584 GTGATTCTGAAGCTGAAGTTCTGA 59.006 41.667 13.44 0.00 32.05 3.27
2619 5172 6.149142 GTGATTCTGAAGCTGAAGTTCTGAAT 59.851 38.462 13.44 13.98 46.66 2.57
2620 5173 6.740411 ATTCTGAAGCTGAAGTTCTGAATC 57.260 37.500 13.44 10.11 43.51 2.52
2621 5174 5.480642 TCTGAAGCTGAAGTTCTGAATCT 57.519 39.130 13.44 0.00 31.27 2.40
2622 5175 5.236282 TCTGAAGCTGAAGTTCTGAATCTG 58.764 41.667 13.44 12.46 31.27 2.90
2623 5176 5.011431 TCTGAAGCTGAAGTTCTGAATCTGA 59.989 40.000 13.44 14.10 31.27 3.27
2629 5182 4.511527 TGAAGTTCTGAATCTGATCCAGC 58.488 43.478 4.17 0.00 0.00 4.85
2647 5200 4.004196 CAGCATATGGAGCTCAATCAGA 57.996 45.455 17.19 1.83 41.14 3.27
2757 5359 1.001520 TCGTCGGACAACATGGTGATT 59.998 47.619 19.90 0.00 0.00 2.57
2876 5478 4.499183 CTCATGGAGAGGTACAAACAGTC 58.501 47.826 0.00 0.00 40.84 3.51
2926 5528 0.038166 GGATGCCTGGAACACCTGAA 59.962 55.000 0.00 0.00 0.00 3.02
2927 5529 1.168714 GATGCCTGGAACACCTGAAC 58.831 55.000 0.00 0.00 0.00 3.18
2942 5544 1.200020 CTGAACATTCAGCGAAACCCC 59.800 52.381 8.63 0.00 46.97 4.95
2951 5553 1.072505 GCGAAACCCCCTCTGAACA 59.927 57.895 0.00 0.00 0.00 3.18
2956 5558 3.057526 CGAAACCCCCTCTGAACAAATTC 60.058 47.826 0.00 0.00 35.18 2.17
3055 5657 4.751431 GAGGTTGCCCTGCAGATT 57.249 55.556 17.39 0.00 42.86 2.40
3067 5669 2.741985 CAGATTGCGTCGGTGGCA 60.742 61.111 0.00 0.00 38.93 4.92
3070 5672 3.027170 GATTGCGTCGGTGGCAGTG 62.027 63.158 0.00 0.00 42.12 3.66
3115 5717 0.670546 GGACACTGGTGACATCGGTG 60.671 60.000 23.43 23.43 44.59 4.94
3145 5747 2.594592 GCCGTTGTGTCCTTGGCT 60.595 61.111 0.00 0.00 42.44 4.75
3254 5856 0.536006 GCCATAATCCTGCGCCTTCT 60.536 55.000 4.18 0.00 0.00 2.85
3296 5898 2.681848 CCTGACTTGATGCAGCTTTAGG 59.318 50.000 2.53 0.00 0.00 2.69
3310 5912 5.181245 GCAGCTTTAGGAAGTGTACATGAAA 59.819 40.000 0.00 0.00 35.25 2.69
3332 5934 8.363390 TGAAACACATTGCTTTATTTGATACCA 58.637 29.630 0.00 0.00 0.00 3.25
3388 5991 0.382515 TCAAACCAAAACCGGCTTCG 59.617 50.000 0.00 0.00 0.00 3.79
3491 6223 5.125417 GCTATTACCAGGCAAATCAGAAACA 59.875 40.000 0.00 0.00 0.00 2.83
3586 6318 6.238759 GCACATCCCAGTATTATTTCACTTCC 60.239 42.308 0.00 0.00 0.00 3.46
3659 6391 3.278574 TCGCTTCCCCAAAACATATCTG 58.721 45.455 0.00 0.00 0.00 2.90
3745 6477 8.538701 AGGAGGCAGATTCATAATTATGTCTAG 58.461 37.037 21.89 14.17 35.26 2.43
3750 6482 6.825721 CAGATTCATAATTATGTCTAGGGCCC 59.174 42.308 16.46 16.46 35.26 5.80
3793 6525 3.833650 TGAGTACAAGTCGAACCCCAATA 59.166 43.478 0.00 0.00 0.00 1.90
3796 6528 3.992943 ACAAGTCGAACCCCAATATCA 57.007 42.857 0.00 0.00 0.00 2.15
3892 6624 8.123639 AGAACTTAGCTATCAAAGTACAGACA 57.876 34.615 0.11 0.00 34.91 3.41
3906 6638 2.034879 AGACAACCCGCAGCATTCG 61.035 57.895 0.00 0.00 0.00 3.34
3992 6724 6.764379 TGAATCATCCACAGTACTAACAACA 58.236 36.000 0.00 0.00 0.00 3.33
4016 6748 4.277476 TGTTCTCACCCACTTCAACAAAT 58.723 39.130 0.00 0.00 0.00 2.32
4078 6812 2.751166 TACTTCAAGCTGCAGGACTC 57.249 50.000 17.12 0.00 0.00 3.36
4079 6813 1.055040 ACTTCAAGCTGCAGGACTCT 58.945 50.000 17.12 0.02 0.00 3.24
4186 6921 4.021102 ACACCATTCCACAAAGGTCTAG 57.979 45.455 0.00 0.00 39.02 2.43
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 0.366871 CCGCTCTGATTCGTTCAACG 59.633 55.000 2.64 2.64 44.19 4.10
3 4 0.391130 CCCCGCTCTGATTCGTTCAA 60.391 55.000 0.00 0.00 32.78 2.69
4 5 1.218047 CCCCGCTCTGATTCGTTCA 59.782 57.895 0.00 0.00 0.00 3.18
7 8 2.954684 TTGCCCCGCTCTGATTCGT 61.955 57.895 0.00 0.00 0.00 3.85
12 13 4.329545 GGTGTTGCCCCGCTCTGA 62.330 66.667 0.00 0.00 0.00 3.27
23 24 1.663695 GATGGTATGTCCGGGTGTTG 58.336 55.000 0.00 0.00 39.52 3.33
24 25 0.177141 CGATGGTATGTCCGGGTGTT 59.823 55.000 0.00 0.00 39.52 3.32
25 26 0.685131 TCGATGGTATGTCCGGGTGT 60.685 55.000 0.00 0.00 39.52 4.16
27 28 0.462789 GTTCGATGGTATGTCCGGGT 59.537 55.000 0.00 0.00 39.52 5.28
28 29 0.750850 AGTTCGATGGTATGTCCGGG 59.249 55.000 0.00 0.00 39.52 5.73
29 30 1.407618 TGAGTTCGATGGTATGTCCGG 59.592 52.381 0.00 0.00 39.52 5.14
31 32 5.869888 GGATATTGAGTTCGATGGTATGTCC 59.130 44.000 0.00 0.00 0.00 4.02
34 35 4.864806 CCGGATATTGAGTTCGATGGTATG 59.135 45.833 0.00 0.00 0.00 2.39
36 37 3.305813 GCCGGATATTGAGTTCGATGGTA 60.306 47.826 5.05 0.00 0.00 3.25
37 38 2.548067 GCCGGATATTGAGTTCGATGGT 60.548 50.000 5.05 0.00 0.00 3.55
39 40 2.754472 TGCCGGATATTGAGTTCGATG 58.246 47.619 5.05 0.00 0.00 3.84
40 41 3.589988 GATGCCGGATATTGAGTTCGAT 58.410 45.455 5.05 0.00 0.00 3.59
41 42 2.288825 GGATGCCGGATATTGAGTTCGA 60.289 50.000 5.05 0.00 0.00 3.71
44 45 1.073923 GGGGATGCCGGATATTGAGTT 59.926 52.381 5.05 0.00 0.00 3.01
46 47 0.391661 CGGGGATGCCGGATATTGAG 60.392 60.000 5.05 0.00 0.00 3.02
47 48 1.676968 CGGGGATGCCGGATATTGA 59.323 57.895 5.05 0.00 0.00 2.57
48 49 2.040544 GCGGGGATGCCGGATATTG 61.041 63.158 15.29 0.00 0.00 1.90
50 51 2.927856 TGCGGGGATGCCGGATAT 60.928 61.111 15.29 0.00 0.00 1.63
56 57 2.862674 TTTAGTCGTGCGGGGATGCC 62.863 60.000 0.00 0.00 0.00 4.40
58 59 1.418342 CGTTTAGTCGTGCGGGGATG 61.418 60.000 0.00 0.00 0.00 3.51
60 61 2.259204 CGTTTAGTCGTGCGGGGA 59.741 61.111 0.00 0.00 0.00 4.81
61 62 2.812178 CCGTTTAGTCGTGCGGGG 60.812 66.667 0.00 0.00 40.45 5.73
69 70 1.815003 TCCTCCTTCGACCGTTTAGTC 59.185 52.381 0.00 0.00 0.00 2.59
70 71 1.915141 TCCTCCTTCGACCGTTTAGT 58.085 50.000 0.00 0.00 0.00 2.24
71 72 2.991866 GTTTCCTCCTTCGACCGTTTAG 59.008 50.000 0.00 0.00 0.00 1.85
73 74 1.139455 TGTTTCCTCCTTCGACCGTTT 59.861 47.619 0.00 0.00 0.00 3.60
74 75 0.754472 TGTTTCCTCCTTCGACCGTT 59.246 50.000 0.00 0.00 0.00 4.44
75 76 0.754472 TTGTTTCCTCCTTCGACCGT 59.246 50.000 0.00 0.00 0.00 4.83
76 77 2.094762 ATTGTTTCCTCCTTCGACCG 57.905 50.000 0.00 0.00 0.00 4.79
79 80 3.618997 GCAGGTATTGTTTCCTCCTTCGA 60.619 47.826 0.00 0.00 30.91 3.71
80 81 2.678336 GCAGGTATTGTTTCCTCCTTCG 59.322 50.000 0.00 0.00 30.91 3.79
81 82 3.017442 GGCAGGTATTGTTTCCTCCTTC 58.983 50.000 0.00 0.00 30.91 3.46
82 83 2.378547 TGGCAGGTATTGTTTCCTCCTT 59.621 45.455 0.00 0.00 30.91 3.36
86 87 4.270008 GTGTATGGCAGGTATTGTTTCCT 58.730 43.478 0.00 0.00 33.96 3.36
87 88 3.064820 CGTGTATGGCAGGTATTGTTTCC 59.935 47.826 0.00 0.00 0.00 3.13
91 92 3.620427 TTCGTGTATGGCAGGTATTGT 57.380 42.857 0.00 0.00 34.79 2.71
92 93 4.024893 GTGATTCGTGTATGGCAGGTATTG 60.025 45.833 0.00 0.00 34.79 1.90
94 95 3.728845 GTGATTCGTGTATGGCAGGTAT 58.271 45.455 0.00 0.00 34.79 2.73
95 96 2.480587 CGTGATTCGTGTATGGCAGGTA 60.481 50.000 0.00 0.00 34.79 3.08
97 98 0.930310 CGTGATTCGTGTATGGCAGG 59.070 55.000 0.00 0.00 34.52 4.85
99 100 2.267426 CTTCGTGATTCGTGTATGGCA 58.733 47.619 0.00 0.00 40.80 4.92
103 104 2.540515 CTGGCTTCGTGATTCGTGTAT 58.459 47.619 0.00 0.00 40.80 2.29
105 106 1.291877 GCTGGCTTCGTGATTCGTGT 61.292 55.000 0.00 0.00 40.80 4.49
107 108 1.005037 TGCTGGCTTCGTGATTCGT 60.005 52.632 0.00 0.00 40.80 3.85
108 109 1.291184 TGTGCTGGCTTCGTGATTCG 61.291 55.000 0.00 0.00 41.41 3.34
109 110 0.166814 GTGTGCTGGCTTCGTGATTC 59.833 55.000 0.00 0.00 0.00 2.52
111 112 2.029288 CGTGTGCTGGCTTCGTGAT 61.029 57.895 0.00 0.00 0.00 3.06
112 113 2.434658 ATCGTGTGCTGGCTTCGTGA 62.435 55.000 0.00 0.00 0.00 4.35
114 115 1.738099 GATCGTGTGCTGGCTTCGT 60.738 57.895 0.00 0.00 0.00 3.85
115 116 2.456119 GGATCGTGTGCTGGCTTCG 61.456 63.158 0.00 0.00 0.00 3.79
118 119 1.153289 GATGGATCGTGTGCTGGCT 60.153 57.895 0.00 0.00 0.00 4.75
119 120 0.816825 ATGATGGATCGTGTGCTGGC 60.817 55.000 0.00 0.00 0.00 4.85
120 121 1.202615 AGATGATGGATCGTGTGCTGG 60.203 52.381 0.00 0.00 36.04 4.85
124 125 3.129109 CTGGAAGATGATGGATCGTGTG 58.871 50.000 0.00 0.00 36.04 3.82
125 126 3.033909 TCTGGAAGATGATGGATCGTGT 58.966 45.455 0.00 0.00 38.67 4.49
126 127 3.740631 TCTGGAAGATGATGGATCGTG 57.259 47.619 0.00 0.00 38.67 4.35
140 141 1.521457 GCATCGACGGCATCTGGAA 60.521 57.895 6.06 0.00 0.00 3.53
142 143 2.202919 TGCATCGACGGCATCTGG 60.203 61.111 9.35 0.00 36.11 3.86
144 145 1.227089 GTCTGCATCGACGGCATCT 60.227 57.895 13.32 0.00 41.06 2.90
146 147 2.202932 GGTCTGCATCGACGGCAT 60.203 61.111 13.32 0.00 41.06 4.40
147 148 3.690280 TGGTCTGCATCGACGGCA 61.690 61.111 12.45 12.45 39.32 5.69
148 149 3.188786 GTGGTCTGCATCGACGGC 61.189 66.667 4.04 4.04 34.75 5.68
152 153 2.014335 CAGATTGTGGTCTGCATCGA 57.986 50.000 0.00 0.00 39.19 3.59
161 162 1.139058 GGAGCGGATACAGATTGTGGT 59.861 52.381 0.00 0.00 0.00 4.16
163 164 2.477825 CAGGAGCGGATACAGATTGTG 58.522 52.381 0.00 0.00 0.00 3.33
164 165 1.414181 CCAGGAGCGGATACAGATTGT 59.586 52.381 0.00 0.00 0.00 2.71
166 167 1.689273 GTCCAGGAGCGGATACAGATT 59.311 52.381 0.00 0.00 37.41 2.40
167 168 1.133325 AGTCCAGGAGCGGATACAGAT 60.133 52.381 0.00 0.00 37.41 2.90
168 169 0.259065 AGTCCAGGAGCGGATACAGA 59.741 55.000 0.00 0.00 37.41 3.41
170 171 1.688772 GTAGTCCAGGAGCGGATACA 58.311 55.000 0.00 0.00 37.41 2.29
172 173 0.851469 AGGTAGTCCAGGAGCGGATA 59.149 55.000 0.00 0.00 37.41 2.59
174 175 1.076923 GAGGTAGTCCAGGAGCGGA 60.077 63.158 0.00 0.00 35.89 5.54
175 176 2.128507 GGAGGTAGTCCAGGAGCGG 61.129 68.421 0.00 0.00 46.10 5.52
176 177 3.527641 GGAGGTAGTCCAGGAGCG 58.472 66.667 0.00 0.00 46.10 5.03
183 184 1.762858 GGAGGCTGGGAGGTAGTCC 60.763 68.421 0.00 0.00 46.10 3.85
185 186 2.042843 CGGAGGCTGGGAGGTAGT 60.043 66.667 0.00 0.00 0.00 2.73
186 187 2.042843 ACGGAGGCTGGGAGGTAG 60.043 66.667 0.00 0.00 0.00 3.18
205 206 2.179018 CATTTGCTCCAACGCCGG 59.821 61.111 0.00 0.00 0.00 6.13
207 208 2.125952 GGCATTTGCTCCAACGCC 60.126 61.111 2.12 2.86 41.70 5.68
208 209 2.504681 CGGCATTTGCTCCAACGC 60.505 61.111 2.12 0.00 41.70 4.84
211 212 0.250684 TGAGACGGCATTTGCTCCAA 60.251 50.000 2.12 0.00 41.70 3.53
212 213 0.250684 TTGAGACGGCATTTGCTCCA 60.251 50.000 2.12 0.00 41.70 3.86
214 215 0.179215 CGTTGAGACGGCATTTGCTC 60.179 55.000 2.12 0.00 45.32 4.26
215 216 1.868997 CGTTGAGACGGCATTTGCT 59.131 52.632 2.12 0.00 45.32 3.91
216 217 4.440214 CGTTGAGACGGCATTTGC 57.560 55.556 0.00 0.00 45.32 3.68
235 236 0.535102 ACTTGTGTCCTTGGGCTTCG 60.535 55.000 0.00 0.00 0.00 3.79
236 237 1.239347 GACTTGTGTCCTTGGGCTTC 58.761 55.000 0.00 0.00 37.24 3.86
246 247 1.347707 TCCTCATGGTGGACTTGTGTC 59.652 52.381 4.58 0.00 37.26 3.67
247 248 1.434188 TCCTCATGGTGGACTTGTGT 58.566 50.000 4.58 0.00 34.23 3.72
249 250 1.340405 GCATCCTCATGGTGGACTTGT 60.340 52.381 9.90 0.00 36.30 3.16
251 252 1.293062 AGCATCCTCATGGTGGACTT 58.707 50.000 9.90 0.00 39.36 3.01
252 253 3.018280 AGCATCCTCATGGTGGACT 57.982 52.632 9.90 2.79 39.36 3.85
257 258 2.191375 CGGCAGCATCCTCATGGT 59.809 61.111 0.00 0.00 41.64 3.55
258 259 3.285215 GCGGCAGCATCCTCATGG 61.285 66.667 3.18 0.00 44.35 3.66
287 288 2.863809 ACTAGGTTGTTCAAGCAAGGG 58.136 47.619 15.36 6.26 0.00 3.95
288 289 4.261614 GGAAACTAGGTTGTTCAAGCAAGG 60.262 45.833 15.36 8.18 0.00 3.61
291 292 3.892284 TGGAAACTAGGTTGTTCAAGCA 58.108 40.909 15.36 3.18 0.00 3.91
292 293 4.911514 TTGGAAACTAGGTTGTTCAAGC 57.088 40.909 0.00 6.63 0.00 4.01
295 296 4.517453 CGGATTTGGAAACTAGGTTGTTCA 59.483 41.667 0.00 0.00 0.00 3.18
298 299 2.817844 GCGGATTTGGAAACTAGGTTGT 59.182 45.455 0.00 0.00 0.00 3.32
300 301 2.443416 GGCGGATTTGGAAACTAGGTT 58.557 47.619 0.00 0.00 0.00 3.50
301 302 1.340697 GGGCGGATTTGGAAACTAGGT 60.341 52.381 0.00 0.00 0.00 3.08
303 304 1.340600 TGGGGCGGATTTGGAAACTAG 60.341 52.381 0.00 0.00 0.00 2.57
304 305 0.699399 TGGGGCGGATTTGGAAACTA 59.301 50.000 0.00 0.00 0.00 2.24
311 312 1.340889 CATATGGTTGGGGCGGATTTG 59.659 52.381 0.00 0.00 0.00 2.32
313 314 0.850100 TCATATGGTTGGGGCGGATT 59.150 50.000 2.13 0.00 0.00 3.01
314 315 0.110486 GTCATATGGTTGGGGCGGAT 59.890 55.000 2.13 0.00 0.00 4.18
315 316 1.529796 GTCATATGGTTGGGGCGGA 59.470 57.895 2.13 0.00 0.00 5.54
318 319 0.110486 ATCCGTCATATGGTTGGGGC 59.890 55.000 2.13 0.00 0.00 5.80
323 324 2.806745 CGAGGCAATCCGTCATATGGTT 60.807 50.000 2.13 0.00 37.47 3.67
325 326 1.432514 CGAGGCAATCCGTCATATGG 58.567 55.000 2.13 0.00 37.47 2.74
327 328 1.048601 ACCGAGGCAATCCGTCATAT 58.951 50.000 0.00 0.00 37.47 1.78
328 329 0.828022 AACCGAGGCAATCCGTCATA 59.172 50.000 0.00 0.00 37.47 2.15
329 330 0.744414 CAACCGAGGCAATCCGTCAT 60.744 55.000 0.00 0.00 37.47 3.06
331 332 2.106683 CCAACCGAGGCAATCCGTC 61.107 63.158 0.00 0.00 37.47 4.79
332 333 2.046314 CCAACCGAGGCAATCCGT 60.046 61.111 0.00 0.00 37.47 4.69
333 334 2.813226 TTCCCAACCGAGGCAATCCG 62.813 60.000 0.00 0.00 37.47 4.18
334 335 1.001393 TTCCCAACCGAGGCAATCC 60.001 57.895 0.00 0.00 0.00 3.01
336 337 1.000896 CCTTCCCAACCGAGGCAAT 60.001 57.895 0.00 0.00 0.00 3.56
337 338 1.497309 ATCCTTCCCAACCGAGGCAA 61.497 55.000 0.00 0.00 0.00 4.52
338 339 1.910580 GATCCTTCCCAACCGAGGCA 61.911 60.000 0.00 0.00 0.00 4.75
342 343 1.651737 TTCAGATCCTTCCCAACCGA 58.348 50.000 0.00 0.00 0.00 4.69
345 346 4.657013 AGAAGTTTCAGATCCTTCCCAAC 58.343 43.478 5.38 0.00 36.16 3.77
346 347 5.324832 AAGAAGTTTCAGATCCTTCCCAA 57.675 39.130 5.38 0.00 36.16 4.12
348 349 7.611855 TGAATAAAGAAGTTTCAGATCCTTCCC 59.388 37.037 5.38 0.00 36.16 3.97
349 350 8.567285 TGAATAAAGAAGTTTCAGATCCTTCC 57.433 34.615 5.38 0.00 36.16 3.46
355 356 5.163713 GCCGCTGAATAAAGAAGTTTCAGAT 60.164 40.000 14.28 0.00 45.88 2.90
358 359 3.120338 CGCCGCTGAATAAAGAAGTTTCA 60.120 43.478 0.00 0.00 0.00 2.69
359 360 3.417185 CGCCGCTGAATAAAGAAGTTTC 58.583 45.455 0.00 0.00 0.00 2.78
360 361 2.414161 GCGCCGCTGAATAAAGAAGTTT 60.414 45.455 0.00 0.00 0.00 2.66
362 363 0.727398 GCGCCGCTGAATAAAGAAGT 59.273 50.000 0.00 0.00 0.00 3.01
364 365 0.675208 TGGCGCCGCTGAATAAAGAA 60.675 50.000 23.90 0.00 0.00 2.52
367 368 0.100325 CAATGGCGCCGCTGAATAAA 59.900 50.000 23.90 0.00 0.00 1.40
368 369 1.726865 CAATGGCGCCGCTGAATAA 59.273 52.632 23.90 0.49 0.00 1.40
370 371 4.197498 GCAATGGCGCCGCTGAAT 62.197 61.111 26.80 10.89 0.00 2.57
389 390 2.763627 ATTGTTTTGGCTTCGGCGGC 62.764 55.000 7.21 2.69 42.91 6.53
392 393 2.061028 CTTCATTGTTTTGGCTTCGGC 58.939 47.619 0.00 0.00 40.88 5.54
397 398 3.509442 TGGATCCTTCATTGTTTTGGCT 58.491 40.909 14.23 0.00 0.00 4.75
398 399 3.959535 TGGATCCTTCATTGTTTTGGC 57.040 42.857 14.23 0.00 0.00 4.52
436 437 6.657541 TGGATCATGTTGTTTTAGGTTAGACC 59.342 38.462 0.00 0.00 38.99 3.85
437 438 7.174253 TGTGGATCATGTTGTTTTAGGTTAGAC 59.826 37.037 0.00 0.00 0.00 2.59
438 439 7.174253 GTGTGGATCATGTTGTTTTAGGTTAGA 59.826 37.037 0.00 0.00 0.00 2.10
441 442 5.596361 TGTGTGGATCATGTTGTTTTAGGTT 59.404 36.000 0.00 0.00 0.00 3.50
442 443 5.009610 GTGTGTGGATCATGTTGTTTTAGGT 59.990 40.000 0.00 0.00 0.00 3.08
443 444 5.460646 GTGTGTGGATCATGTTGTTTTAGG 58.539 41.667 0.00 0.00 0.00 2.69
444 445 5.146460 CGTGTGTGGATCATGTTGTTTTAG 58.854 41.667 0.00 0.00 0.00 1.85
445 446 4.576873 ACGTGTGTGGATCATGTTGTTTTA 59.423 37.500 0.00 0.00 32.04 1.52
446 447 3.380004 ACGTGTGTGGATCATGTTGTTTT 59.620 39.130 0.00 0.00 32.04 2.43
447 448 2.948979 ACGTGTGTGGATCATGTTGTTT 59.051 40.909 0.00 0.00 32.04 2.83
450 451 3.584834 TCTACGTGTGTGGATCATGTTG 58.415 45.455 0.00 0.00 36.58 3.33
459 460 1.544246 TCACCAGATCTACGTGTGTGG 59.456 52.381 17.34 5.18 0.00 4.17
461 462 2.750166 CTCTCACCAGATCTACGTGTGT 59.250 50.000 17.34 0.00 0.00 3.72
463 464 3.055021 TCTCTCTCACCAGATCTACGTGT 60.055 47.826 17.34 2.30 0.00 4.49
464 465 3.536570 TCTCTCTCACCAGATCTACGTG 58.463 50.000 13.53 13.53 0.00 4.49
466 467 5.568685 TTTTCTCTCTCACCAGATCTACG 57.431 43.478 0.00 0.00 0.00 3.51
467 468 7.651704 GCTATTTTTCTCTCTCACCAGATCTAC 59.348 40.741 0.00 0.00 0.00 2.59
469 470 6.383726 AGCTATTTTTCTCTCTCACCAGATCT 59.616 38.462 0.00 0.00 0.00 2.75
470 471 6.479660 CAGCTATTTTTCTCTCTCACCAGATC 59.520 42.308 0.00 0.00 0.00 2.75
472 473 5.481824 TCAGCTATTTTTCTCTCTCACCAGA 59.518 40.000 0.00 0.00 0.00 3.86
478 479 5.007528 GCCATGTCAGCTATTTTTCTCTCTC 59.992 44.000 0.00 0.00 0.00 3.20
480 481 4.637534 TGCCATGTCAGCTATTTTTCTCTC 59.362 41.667 0.00 0.00 0.00 3.20
482 483 4.397417 ACTGCCATGTCAGCTATTTTTCTC 59.603 41.667 3.09 0.00 37.59 2.87
486 487 5.473039 GAAAACTGCCATGTCAGCTATTTT 58.527 37.500 3.09 3.61 37.59 1.82
489 490 3.019564 GGAAAACTGCCATGTCAGCTAT 58.980 45.455 3.09 0.00 37.59 2.97
490 491 2.224744 TGGAAAACTGCCATGTCAGCTA 60.225 45.455 3.09 0.00 37.59 3.32
492 493 0.961019 TGGAAAACTGCCATGTCAGC 59.039 50.000 3.09 0.00 37.59 4.26
493 494 1.068055 GCTGGAAAACTGCCATGTCAG 60.068 52.381 1.35 1.35 38.01 3.51
494 495 0.961019 GCTGGAAAACTGCCATGTCA 59.039 50.000 0.00 0.00 38.01 3.58
495 496 0.109597 CGCTGGAAAACTGCCATGTC 60.110 55.000 0.00 0.00 40.57 3.06
499 500 0.383949 GAAACGCTGGAAAACTGCCA 59.616 50.000 0.00 0.00 40.57 4.92
514 515 4.433022 GCTATAGATGCATGTACGCGAAAC 60.433 45.833 15.93 11.57 33.35 2.78
516 517 3.242518 GCTATAGATGCATGTACGCGAA 58.757 45.455 15.93 0.00 33.35 4.70
521 522 4.221703 AGTCCTGGCTATAGATGCATGTAC 59.778 45.833 2.46 0.00 0.00 2.90
523 524 3.246301 AGTCCTGGCTATAGATGCATGT 58.754 45.455 2.46 1.37 0.00 3.21
526 527 4.026744 GGATAGTCCTGGCTATAGATGCA 58.973 47.826 3.21 0.00 32.32 3.96
527 528 3.067461 CGGATAGTCCTGGCTATAGATGC 59.933 52.174 3.21 0.00 33.30 3.91
530 531 4.383931 AACGGATAGTCCTGGCTATAGA 57.616 45.455 3.21 0.00 33.30 1.98
533 534 2.818432 CGTAACGGATAGTCCTGGCTAT 59.182 50.000 9.46 9.46 33.30 2.97
534 535 2.224606 CGTAACGGATAGTCCTGGCTA 58.775 52.381 0.00 0.00 33.30 3.93
573 574 2.478134 GTGGATTGATACGCTCTCATGC 59.522 50.000 0.00 0.00 0.00 4.06
574 575 3.987547 AGTGGATTGATACGCTCTCATG 58.012 45.455 0.00 0.00 0.00 3.07
575 576 5.991933 ATAGTGGATTGATACGCTCTCAT 57.008 39.130 0.00 0.00 32.73 2.90
576 577 6.004574 ACTATAGTGGATTGATACGCTCTCA 58.995 40.000 4.10 0.00 32.73 3.27
598 599 7.472543 GTGTTTCAATACAGTTCTCAAACACT 58.527 34.615 14.51 0.00 44.36 3.55
599 600 7.429340 CAGTGTTTCAATACAGTTCTCAAACAC 59.571 37.037 14.12 14.12 46.46 3.32
600 601 7.120579 ACAGTGTTTCAATACAGTTCTCAAACA 59.879 33.333 0.00 0.00 37.88 2.83
602 603 7.120579 ACACAGTGTTTCAATACAGTTCTCAAA 59.879 33.333 0.00 0.00 29.35 2.69
605 606 6.604735 ACACAGTGTTTCAATACAGTTCTC 57.395 37.500 0.00 0.00 29.35 2.87
606 607 7.391148 AAACACAGTGTTTCAATACAGTTCT 57.609 32.000 23.58 0.00 46.61 3.01
620 621 2.353579 GGCTTGTAACGAAACACAGTGT 59.646 45.455 0.00 0.00 0.00 3.55
633 634 0.249531 TCGTGCTCGTTGGCTTGTAA 60.250 50.000 8.17 0.00 38.33 2.41
635 636 1.301716 ATCGTGCTCGTTGGCTTGT 60.302 52.632 8.17 0.00 38.33 3.16
638 639 1.738099 GTCATCGTGCTCGTTGGCT 60.738 57.895 14.62 0.00 38.05 4.75
639 640 0.457853 TAGTCATCGTGCTCGTTGGC 60.458 55.000 14.19 14.19 40.33 4.52
640 641 1.990799 TTAGTCATCGTGCTCGTTGG 58.009 50.000 16.57 5.13 37.37 3.77
641 642 2.729360 TGTTTAGTCATCGTGCTCGTTG 59.271 45.455 11.90 11.90 37.89 4.10
644 645 3.367932 ACAATGTTTAGTCATCGTGCTCG 59.632 43.478 0.81 0.81 38.55 5.03
645 646 4.928661 ACAATGTTTAGTCATCGTGCTC 57.071 40.909 0.00 0.00 0.00 4.26
646 647 5.479306 ACTACAATGTTTAGTCATCGTGCT 58.521 37.500 0.00 0.00 0.00 4.40
648 649 7.220300 GGAGTACTACAATGTTTAGTCATCGTG 59.780 40.741 0.00 0.00 31.99 4.35
649 650 7.122353 AGGAGTACTACAATGTTTAGTCATCGT 59.878 37.037 8.10 0.00 31.99 3.73
652 653 9.654663 GAAAGGAGTACTACAATGTTTAGTCAT 57.345 33.333 8.10 0.00 31.99 3.06
655 656 7.664758 ACGAAAGGAGTACTACAATGTTTAGT 58.335 34.615 8.10 2.93 34.15 2.24
656 657 8.530269 AACGAAAGGAGTACTACAATGTTTAG 57.470 34.615 8.10 2.31 0.00 1.85
657 658 8.143193 TGAACGAAAGGAGTACTACAATGTTTA 58.857 33.333 8.10 0.87 0.00 2.01
661 662 6.157211 AGTGAACGAAAGGAGTACTACAATG 58.843 40.000 8.10 0.00 0.00 2.82
667 668 5.425630 ACAAAAGTGAACGAAAGGAGTACT 58.574 37.500 0.00 0.00 0.00 2.73
668 669 5.729974 ACAAAAGTGAACGAAAGGAGTAC 57.270 39.130 0.00 0.00 0.00 2.73
669 670 6.256321 GTGTACAAAAGTGAACGAAAGGAGTA 59.744 38.462 0.00 0.00 0.00 2.59
670 671 5.064325 GTGTACAAAAGTGAACGAAAGGAGT 59.936 40.000 0.00 0.00 0.00 3.85
672 673 5.064198 CAGTGTACAAAAGTGAACGAAAGGA 59.936 40.000 0.00 0.00 0.00 3.36
673 674 5.163794 ACAGTGTACAAAAGTGAACGAAAGG 60.164 40.000 0.00 0.00 0.00 3.11
674 675 5.864986 ACAGTGTACAAAAGTGAACGAAAG 58.135 37.500 0.00 0.00 0.00 2.62
675 676 5.866335 ACAGTGTACAAAAGTGAACGAAA 57.134 34.783 0.00 0.00 0.00 3.46
709 710 9.313118 GAAATTAAACTGTTTTGGATGTTGTCT 57.687 29.630 11.48 0.00 0.00 3.41
710 711 9.092876 TGAAATTAAACTGTTTTGGATGTTGTC 57.907 29.630 11.48 0.00 0.00 3.18
714 715 7.439056 CAGCTGAAATTAAACTGTTTTGGATGT 59.561 33.333 8.42 0.00 0.00 3.06
715 716 7.439056 ACAGCTGAAATTAAACTGTTTTGGATG 59.561 33.333 23.35 5.98 38.38 3.51
717 718 6.872920 ACAGCTGAAATTAAACTGTTTTGGA 58.127 32.000 23.35 0.00 38.38 3.53
719 720 7.992180 AGACAGCTGAAATTAAACTGTTTTG 57.008 32.000 23.35 2.97 41.45 2.44
723 724 8.903820 AGTTTTAGACAGCTGAAATTAAACTGT 58.096 29.630 23.35 6.47 43.93 3.55
745 746 8.398878 TCCATCCGTTCACTTTTTATAAGTTT 57.601 30.769 0.00 0.00 0.00 2.66
747 748 6.093633 GCTCCATCCGTTCACTTTTTATAAGT 59.906 38.462 0.00 0.00 0.00 2.24
748 749 6.487103 GCTCCATCCGTTCACTTTTTATAAG 58.513 40.000 0.00 0.00 0.00 1.73
749 750 5.064198 CGCTCCATCCGTTCACTTTTTATAA 59.936 40.000 0.00 0.00 0.00 0.98
752 753 2.739913 CGCTCCATCCGTTCACTTTTTA 59.260 45.455 0.00 0.00 0.00 1.52
753 754 1.535462 CGCTCCATCCGTTCACTTTTT 59.465 47.619 0.00 0.00 0.00 1.94
755 756 0.673644 CCGCTCCATCCGTTCACTTT 60.674 55.000 0.00 0.00 0.00 2.66
757 758 0.968901 TACCGCTCCATCCGTTCACT 60.969 55.000 0.00 0.00 0.00 3.41
758 759 0.527817 CTACCGCTCCATCCGTTCAC 60.528 60.000 0.00 0.00 0.00 3.18
759 760 0.968901 ACTACCGCTCCATCCGTTCA 60.969 55.000 0.00 0.00 0.00 3.18
761 762 1.700955 ATACTACCGCTCCATCCGTT 58.299 50.000 0.00 0.00 0.00 4.44
762 763 2.574006 TATACTACCGCTCCATCCGT 57.426 50.000 0.00 0.00 0.00 4.69
763 764 4.451629 AATTATACTACCGCTCCATCCG 57.548 45.455 0.00 0.00 0.00 4.18
765 766 5.468746 TGCAAAATTATACTACCGCTCCATC 59.531 40.000 0.00 0.00 0.00 3.51
767 768 4.771903 TGCAAAATTATACTACCGCTCCA 58.228 39.130 0.00 0.00 0.00 3.86
768 769 5.941948 ATGCAAAATTATACTACCGCTCC 57.058 39.130 0.00 0.00 0.00 4.70
773 774 9.855021 AGACAACAAATGCAAAATTATACTACC 57.145 29.630 0.00 0.00 0.00 3.18
788 789 6.863126 GGAATAGTGAAACCAGACAACAAATG 59.137 38.462 0.00 0.00 37.80 2.32
954 2024 2.529389 ACGGCAGGGGAAGAACCT 60.529 61.111 0.00 0.00 39.43 3.50
988 2058 4.891727 ATCCATGGCGCGTCGTCC 62.892 66.667 6.96 0.00 0.00 4.79
1191 3492 1.045911 CCTTCTCCTTCTCCTCCCCG 61.046 65.000 0.00 0.00 0.00 5.73
1194 3495 2.838637 TCTCCTTCTCCTTCTCCTCC 57.161 55.000 0.00 0.00 0.00 4.30
1584 3889 0.095935 CACGCGCAATTCAGAGAAGG 59.904 55.000 5.73 0.00 0.00 3.46
1702 4015 1.405256 CGCTTCCTCTGCAGAATGTCT 60.405 52.381 18.85 0.00 39.31 3.41
1798 4111 1.134788 CCGAGGTTGAGGATGTGTACC 60.135 57.143 0.00 0.00 0.00 3.34
1818 4141 1.815421 CGCCCGCATATATGGAGGC 60.815 63.158 14.51 15.24 37.03 4.70
1840 4163 1.136329 ACTGTGCAATGGAGGGAGGT 61.136 55.000 0.00 0.00 0.00 3.85
1961 4295 1.270893 GGGTCTTCCTTCTTGCGAAGT 60.271 52.381 0.00 0.00 44.12 3.01
1997 4331 2.124983 CGGTCATGTCAGGGCAGG 60.125 66.667 0.00 0.00 0.00 4.85
2139 4537 0.319641 GACAGGAACCCGGCGATATC 60.320 60.000 9.30 2.51 0.00 1.63
2241 4755 4.083110 GCCCAATCAATCGATTCATACCTG 60.083 45.833 7.92 0.00 39.96 4.00
2304 4821 2.604912 TGGTCTCCTCTGAAGTGCTA 57.395 50.000 0.00 0.00 0.00 3.49
2331 4863 3.876914 TGAACTGCGAACTTCTGAACAAT 59.123 39.130 0.00 0.00 0.00 2.71
2361 4893 3.331889 TCTTCTTCTTCTCCTGCCCAAAT 59.668 43.478 0.00 0.00 0.00 2.32
2370 4902 4.935205 GGCTTCTTCTTCTTCTTCTTCTCC 59.065 45.833 0.00 0.00 0.00 3.71
2372 4904 4.565022 CGGCTTCTTCTTCTTCTTCTTCT 58.435 43.478 0.00 0.00 0.00 2.85
2374 4906 3.070748 GCGGCTTCTTCTTCTTCTTCTT 58.929 45.455 0.00 0.00 0.00 2.52
2377 4913 1.349357 AGGCGGCTTCTTCTTCTTCTT 59.651 47.619 5.25 0.00 0.00 2.52
2593 5140 4.153835 CAGAACTTCAGCTTCAGAATCACC 59.846 45.833 0.00 0.00 0.00 4.02
2606 5159 4.571580 GCTGGATCAGATTCAGAACTTCAG 59.428 45.833 21.63 0.00 32.44 3.02
2608 5161 4.511527 TGCTGGATCAGATTCAGAACTTC 58.488 43.478 21.63 4.81 32.44 3.01
2629 5182 4.820173 TGCTTTCTGATTGAGCTCCATATG 59.180 41.667 12.15 2.42 37.32 1.78
2757 5359 0.843309 TGAACCAGTTCCTGAAGGCA 59.157 50.000 8.01 0.00 38.77 4.75
2781 5383 0.032678 CGACCTGACTCTTGCAGTGT 59.967 55.000 0.00 0.00 34.41 3.55
2872 5474 5.872070 GGAGAAGAGTTAGAATGTTGGACTG 59.128 44.000 0.00 0.00 0.00 3.51
2876 5478 4.627467 CGTGGAGAAGAGTTAGAATGTTGG 59.373 45.833 0.00 0.00 0.00 3.77
2907 5509 0.038166 TTCAGGTGTTCCAGGCATCC 59.962 55.000 0.00 0.00 35.89 3.51
2910 5512 0.478072 ATGTTCAGGTGTTCCAGGCA 59.522 50.000 0.00 0.00 35.89 4.75
2926 5528 0.322546 GAGGGGGTTTCGCTGAATGT 60.323 55.000 0.00 0.00 38.88 2.71
2927 5529 0.035056 AGAGGGGGTTTCGCTGAATG 60.035 55.000 0.00 0.00 38.88 2.67
2934 5536 1.975660 TTTGTTCAGAGGGGGTTTCG 58.024 50.000 0.00 0.00 0.00 3.46
2938 5540 2.819348 GCAGAATTTGTTCAGAGGGGGT 60.819 50.000 0.00 0.00 0.00 4.95
2942 5544 3.181503 CCATCGCAGAATTTGTTCAGAGG 60.182 47.826 0.00 0.00 43.58 3.69
2969 5571 2.342279 GTGCGACCAGTACCTGCA 59.658 61.111 0.00 0.00 0.00 4.41
3024 5626 3.207669 CCTCCAGCGCCTTCATGC 61.208 66.667 2.29 0.00 0.00 4.06
3053 5655 3.049674 CACTGCCACCGACGCAAT 61.050 61.111 0.00 0.00 35.40 3.56
3067 5669 3.692406 GCGAGGAACCCGACCACT 61.692 66.667 0.00 0.00 0.00 4.00
3100 5702 1.371183 CACCACCGATGTCACCAGT 59.629 57.895 0.00 0.00 0.00 4.00
3254 5856 4.019321 AGGAGCTACAAAATCCTAGCAACA 60.019 41.667 0.00 0.00 41.72 3.33
3296 5898 5.762045 AGCAATGTGTTTCATGTACACTTC 58.238 37.500 24.03 14.87 44.76 3.01
3411 6142 4.630894 TTGTCCCGCATTTAGCATTTAG 57.369 40.909 0.00 0.00 46.13 1.85
3491 6223 1.683917 TGTATGGTTTTGCGGCAACTT 59.316 42.857 16.15 5.28 0.00 2.66
3586 6318 7.094631 GCCCTTTTATAACTTGGTAGTTTTGG 58.905 38.462 0.00 0.00 41.85 3.28
3733 6465 3.322862 TGCTGGGCCCTAGACATAATTA 58.677 45.455 25.70 0.00 0.00 1.40
3745 6477 2.729028 TAGATAAGTTTGCTGGGCCC 57.271 50.000 17.59 17.59 0.00 5.80
3750 6482 6.876257 ACTCACCTTCTTAGATAAGTTTGCTG 59.124 38.462 0.00 0.00 34.93 4.41
3793 6525 5.587844 GTCATATGGTGCTTTGTTCTCTGAT 59.412 40.000 2.13 0.00 0.00 2.90
3796 6528 4.697352 GTGTCATATGGTGCTTTGTTCTCT 59.303 41.667 2.13 0.00 0.00 3.10
3892 6624 2.281484 ACACGAATGCTGCGGGTT 60.281 55.556 0.00 0.00 43.89 4.11
3992 6724 3.897239 TGTTGAAGTGGGTGAGAACATT 58.103 40.909 0.00 0.00 0.00 2.71
4039 6771 7.877612 TGAAGTATTTCTCACTTGCATCAACTA 59.122 33.333 0.00 0.00 36.38 2.24
4186 6921 9.631452 GGTACCATTTCGTAGAGTATATTTACC 57.369 37.037 7.15 0.00 38.43 2.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.