Multiple sequence alignment - TraesCS5D01G466100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G466100 chr5D 100.000 6557 0 0 1 6557 508612202 508618758 0.000000e+00 12109.0
1 TraesCS5D01G466100 chr5D 85.123 1956 196 45 1675 3582 508578805 508576897 0.000000e+00 1912.0
2 TraesCS5D01G466100 chr5D 82.847 1166 113 44 4792 5911 508575880 508574756 0.000000e+00 965.0
3 TraesCS5D01G466100 chr5D 88.103 622 70 4 1 620 497856838 497857457 0.000000e+00 736.0
4 TraesCS5D01G466100 chr5D 90.215 511 43 5 4007 4517 508576528 508576025 0.000000e+00 660.0
5 TraesCS5D01G466100 chr5D 88.498 313 30 4 1000 1307 508579500 508579189 2.230000e-99 374.0
6 TraesCS5D01G466100 chr5D 80.876 251 31 10 3607 3848 508576769 508576527 1.450000e-41 182.0
7 TraesCS5D01G466100 chr5D 90.667 75 2 3 1452 1526 508579042 508578973 1.950000e-15 95.3
8 TraesCS5D01G466100 chr5D 96.429 56 2 0 4792 4847 508616938 508616993 7.000000e-15 93.5
9 TraesCS5D01G466100 chr5D 96.429 56 2 0 4737 4792 508616993 508617048 7.000000e-15 93.5
10 TraesCS5D01G466100 chr5B 94.147 2170 88 14 2649 4791 638645596 638643439 0.000000e+00 3267.0
11 TraesCS5D01G466100 chr5B 86.567 1943 191 39 1675 3569 638668349 638670269 0.000000e+00 2078.0
12 TraesCS5D01G466100 chr5B 94.902 1020 30 3 1641 2647 638646681 638645671 0.000000e+00 1576.0
13 TraesCS5D01G466100 chr5B 95.095 999 31 7 622 1605 638647686 638646691 0.000000e+00 1557.0
14 TraesCS5D01G466100 chr5B 89.029 793 73 7 4792 5580 638643493 638642711 0.000000e+00 970.0
15 TraesCS5D01G466100 chr5B 81.898 1254 129 46 4792 5988 638671255 638672467 0.000000e+00 968.0
16 TraesCS5D01G466100 chr5B 92.683 492 35 1 4027 4517 638670609 638671100 0.000000e+00 708.0
17 TraesCS5D01G466100 chr5B 86.935 620 78 3 1 618 508816913 508816295 0.000000e+00 693.0
18 TraesCS5D01G466100 chr5B 91.973 299 19 5 1000 1294 638667716 638668013 1.320000e-111 414.0
19 TraesCS5D01G466100 chr5B 88.372 172 20 0 3844 4015 472754846 472754675 2.400000e-49 207.0
20 TraesCS5D01G466100 chr5B 88.961 154 13 2 1452 1605 638668178 638668327 3.120000e-43 187.0
21 TraesCS5D01G466100 chr5A 85.773 1933 209 39 1676 3569 635938238 635936333 0.000000e+00 1986.0
22 TraesCS5D01G466100 chr5A 90.996 1366 76 19 1682 3012 635948362 635949715 0.000000e+00 1797.0
23 TraesCS5D01G466100 chr5A 90.828 1352 65 32 4792 6112 635951251 635952574 0.000000e+00 1755.0
24 TraesCS5D01G466100 chr5A 93.580 810 36 7 3047 3848 635949720 635950521 0.000000e+00 1194.0
25 TraesCS5D01G466100 chr5A 90.564 763 65 5 4007 4765 635950520 635951279 0.000000e+00 1003.0
26 TraesCS5D01G466100 chr5A 82.394 1136 109 35 4792 5883 635935353 635934265 0.000000e+00 905.0
27 TraesCS5D01G466100 chr5A 91.152 486 42 1 4027 4511 635935984 635935499 0.000000e+00 658.0
28 TraesCS5D01G466100 chr5A 94.587 351 14 2 949 1294 635947584 635947934 7.480000e-149 538.0
29 TraesCS5D01G466100 chr5A 92.837 363 13 7 636 992 635947234 635947589 1.260000e-141 514.0
30 TraesCS5D01G466100 chr5A 78.947 665 89 32 966 1604 635938901 635938262 7.920000e-109 405.0
31 TraesCS5D01G466100 chr5A 93.035 201 8 3 6211 6410 635952892 635953087 8.320000e-74 289.0
32 TraesCS5D01G466100 chr5A 90.123 162 16 0 3847 4008 320214405 320214244 1.850000e-50 211.0
33 TraesCS5D01G466100 chr7D 85.046 1946 218 38 1671 3569 53781991 53783910 0.000000e+00 1914.0
34 TraesCS5D01G466100 chr7D 82.730 1187 113 53 4792 5929 53784944 53786087 0.000000e+00 972.0
35 TraesCS5D01G466100 chr7D 87.601 621 75 2 1 620 27179082 27179701 0.000000e+00 719.0
36 TraesCS5D01G466100 chr7D 90.457 503 43 3 4007 4508 53784296 53784794 0.000000e+00 658.0
37 TraesCS5D01G466100 chr7D 85.942 313 35 7 963 1269 53781008 53781317 6.340000e-85 326.0
38 TraesCS5D01G466100 chr7D 82.800 250 28 9 3606 3848 53784056 53784297 6.660000e-50 209.0
39 TraesCS5D01G466100 chr4A 84.906 1961 218 43 1671 3579 669582109 669580175 0.000000e+00 1910.0
40 TraesCS5D01G466100 chr4A 85.095 1939 207 47 1684 3567 668747751 668749662 0.000000e+00 1905.0
41 TraesCS5D01G466100 chr4A 86.725 806 74 16 4792 5570 669579152 669578353 0.000000e+00 865.0
42 TraesCS5D01G466100 chr4A 86.335 805 76 19 4792 5570 668750696 668751492 0.000000e+00 846.0
43 TraesCS5D01G466100 chr4A 86.817 622 79 3 1 620 648473268 648472648 0.000000e+00 691.0
44 TraesCS5D01G466100 chr4A 89.861 503 46 3 4007 4508 668750048 668750546 5.540000e-180 641.0
45 TraesCS5D01G466100 chr4A 79.710 483 76 17 963 1433 668747154 668747626 4.900000e-86 329.0
46 TraesCS5D01G466100 chr4A 82.731 249 30 6 3606 3848 669580040 669579799 6.660000e-50 209.0
47 TraesCS5D01G466100 chr4A 89.571 163 16 1 3847 4008 97529993 97530155 8.620000e-49 206.0
48 TraesCS5D01G466100 chr3B 95.383 1083 35 8 2775 3848 171174305 171175381 0.000000e+00 1709.0
49 TraesCS5D01G466100 chr3B 93.744 1023 45 9 1641 2647 171173178 171174197 0.000000e+00 1517.0
50 TraesCS5D01G466100 chr3B 92.539 831 30 14 622 1444 171166751 171167557 0.000000e+00 1162.0
51 TraesCS5D01G466100 chr3B 94.673 657 33 2 4007 4663 171175380 171176034 0.000000e+00 1018.0
52 TraesCS5D01G466100 chr3B 90.672 729 53 6 4792 5512 171177616 171178337 0.000000e+00 955.0
53 TraesCS5D01G466100 chr3B 93.478 184 7 2 1426 1605 171172896 171173078 1.080000e-67 268.0
54 TraesCS5D01G466100 chr3B 93.750 144 9 0 4648 4791 171177527 171177670 3.980000e-52 217.0
55 TraesCS5D01G466100 chr7A 85.185 972 119 11 1671 2622 57211675 57212641 0.000000e+00 974.0
56 TraesCS5D01G466100 chr7A 81.887 1187 124 50 4792 5929 57214755 57215899 0.000000e+00 917.0
57 TraesCS5D01G466100 chr7A 84.211 969 107 25 2629 3569 57212783 57213733 0.000000e+00 900.0
58 TraesCS5D01G466100 chr7A 90.631 491 44 2 4019 4508 57214129 57214618 0.000000e+00 651.0
59 TraesCS5D01G466100 chr7A 81.070 486 62 23 963 1433 57211007 57211477 1.740000e-95 361.0
60 TraesCS5D01G466100 chr7A 82.000 250 30 9 3606 3848 57213880 57214121 1.440000e-46 198.0
61 TraesCS5D01G466100 chr2D 88.376 628 71 2 1 627 372703107 372702481 0.000000e+00 754.0
62 TraesCS5D01G466100 chr7B 87.702 618 74 2 4 620 592179622 592179006 0.000000e+00 719.0
63 TraesCS5D01G466100 chr7B 86.998 623 77 4 1 621 540776364 540776984 0.000000e+00 699.0
64 TraesCS5D01G466100 chr1B 87.118 621 77 2 1 620 119293723 119294341 0.000000e+00 701.0
65 TraesCS5D01G466100 chr2B 86.998 623 76 5 1 620 745042532 745043152 0.000000e+00 697.0
66 TraesCS5D01G466100 chr4B 90.741 162 15 0 3847 4008 606916924 606916763 3.980000e-52 217.0
67 TraesCS5D01G466100 chr6B 90.123 162 16 0 3847 4008 36133504 36133665 1.850000e-50 211.0
68 TraesCS5D01G466100 chr4D 90.123 162 16 0 3847 4008 479687421 479687260 1.850000e-50 211.0
69 TraesCS5D01G466100 chr2A 89.506 162 17 0 3847 4008 135473228 135473389 8.620000e-49 206.0
70 TraesCS5D01G466100 chr1A 87.356 174 21 1 3837 4010 534894662 534894834 1.440000e-46 198.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G466100 chr5D 508612202 508618758 6556 False 4098.666667 12109 97.619333 1 6557 3 chr5D.!!$F2 6556
1 TraesCS5D01G466100 chr5D 497856838 497857457 619 False 736.000000 736 88.103000 1 620 1 chr5D.!!$F1 619
2 TraesCS5D01G466100 chr5D 508574756 508579500 4744 True 698.050000 1912 86.371000 1000 5911 6 chr5D.!!$R1 4911
3 TraesCS5D01G466100 chr5B 638642711 638647686 4975 True 1842.500000 3267 93.293250 622 5580 4 chr5B.!!$R3 4958
4 TraesCS5D01G466100 chr5B 638667716 638672467 4751 False 871.000000 2078 88.416400 1000 5988 5 chr5B.!!$F1 4988
5 TraesCS5D01G466100 chr5B 508816295 508816913 618 True 693.000000 693 86.935000 1 618 1 chr5B.!!$R2 617
6 TraesCS5D01G466100 chr5A 635947234 635953087 5853 False 1012.857143 1797 92.346714 636 6410 7 chr5A.!!$F1 5774
7 TraesCS5D01G466100 chr5A 635934265 635938901 4636 True 988.500000 1986 84.566500 966 5883 4 chr5A.!!$R2 4917
8 TraesCS5D01G466100 chr7D 53781008 53786087 5079 False 815.800000 1914 85.395000 963 5929 5 chr7D.!!$F2 4966
9 TraesCS5D01G466100 chr7D 27179082 27179701 619 False 719.000000 719 87.601000 1 620 1 chr7D.!!$F1 619
10 TraesCS5D01G466100 chr4A 669578353 669582109 3756 True 994.666667 1910 84.787333 1671 5570 3 chr4A.!!$R2 3899
11 TraesCS5D01G466100 chr4A 668747154 668751492 4338 False 930.250000 1905 85.250250 963 5570 4 chr4A.!!$F2 4607
12 TraesCS5D01G466100 chr4A 648472648 648473268 620 True 691.000000 691 86.817000 1 620 1 chr4A.!!$R1 619
13 TraesCS5D01G466100 chr3B 171166751 171167557 806 False 1162.000000 1162 92.539000 622 1444 1 chr3B.!!$F1 822
14 TraesCS5D01G466100 chr3B 171172896 171178337 5441 False 947.333333 1709 93.616667 1426 5512 6 chr3B.!!$F2 4086
15 TraesCS5D01G466100 chr7A 57211007 57215899 4892 False 666.833333 974 84.164000 963 5929 6 chr7A.!!$F1 4966
16 TraesCS5D01G466100 chr2D 372702481 372703107 626 True 754.000000 754 88.376000 1 627 1 chr2D.!!$R1 626
17 TraesCS5D01G466100 chr7B 592179006 592179622 616 True 719.000000 719 87.702000 4 620 1 chr7B.!!$R1 616
18 TraesCS5D01G466100 chr7B 540776364 540776984 620 False 699.000000 699 86.998000 1 621 1 chr7B.!!$F1 620
19 TraesCS5D01G466100 chr1B 119293723 119294341 618 False 701.000000 701 87.118000 1 620 1 chr1B.!!$F1 619
20 TraesCS5D01G466100 chr2B 745042532 745043152 620 False 697.000000 697 86.998000 1 620 1 chr2B.!!$F1 619

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
570 576 0.032952 GCCCGATCAATGCCTACGTA 59.967 55.000 0.00 0.00 0.00 3.57 F
601 607 0.040067 GCTTTCACAGGCGTTTGAGG 60.040 55.000 0.00 0.00 0.00 3.86 F
669 675 0.179145 CGGTTTCGCGGTATGTCTCT 60.179 55.000 6.13 0.00 0.00 3.10 F
884 891 0.314578 CTCATTCGCATCGTCGTTGC 60.315 55.000 16.55 16.55 36.74 4.17 F
2183 2991 0.321122 CCTTGAAGGAGCTTCGCACT 60.321 55.000 4.95 0.00 42.78 4.40 F
2467 3302 0.393537 CACCTCAGGAGATTGGCACC 60.394 60.000 0.00 0.00 0.00 5.01 F
2718 3804 0.823769 TCGGTAGGATCGCATCTGCT 60.824 55.000 0.09 0.00 39.32 4.24 F
4332 5599 0.385473 GTTTGGTGATGGTGTTCGCG 60.385 55.000 0.00 0.00 0.00 5.87 F
5137 7959 1.068055 GTCAATGTTGCTCTTGCCTGG 60.068 52.381 0.00 0.00 38.71 4.45 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2467 3302 0.388907 CTTTTGCAACCCTCATGCGG 60.389 55.000 0.00 0.00 46.76 5.69 R
2670 3747 9.595823 GTAACTAATTGCTTCCTGTTATAGTCA 57.404 33.333 0.00 0.00 0.00 3.41 R
2700 3785 4.251760 GCAGATGCGATCCTACCG 57.748 61.111 0.00 0.00 0.00 4.02 R
2913 4012 5.296151 TCTTTCCAGGACATATCACCATC 57.704 43.478 0.00 0.00 0.00 3.51 R
3098 4203 2.030805 GTGACCTGCAAATCCAAGACAC 60.031 50.000 0.00 0.00 0.00 3.67 R
4323 5590 1.373590 ATGGTTATGCCGCGAACACC 61.374 55.000 8.23 6.83 41.21 4.16 R
4433 5701 5.841957 AAACCTTATCATGGTCAGCATTC 57.158 39.130 0.00 0.00 36.69 2.67 R
5240 8062 0.737219 CTGCCAAGATAGCCAGTTGC 59.263 55.000 0.00 0.00 41.71 4.17 R
6392 9509 0.888736 TGATGTGGCGGTTGACTTGG 60.889 55.000 0.00 0.00 0.00 3.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
172 176 1.001378 GCATTGTGAAGAAACGGCAGT 60.001 47.619 0.00 0.00 0.00 4.40
174 178 2.031258 TTGTGAAGAAACGGCAGTGA 57.969 45.000 0.00 0.00 0.00 3.41
184 188 1.594293 CGGCAGTGAAGGAACACGT 60.594 57.895 0.00 0.00 44.35 4.49
216 221 0.107945 GAGAGCAGAATCAGGCGGTT 60.108 55.000 0.00 0.00 34.54 4.44
277 282 3.465296 AACGACGGCGAGGATAGCG 62.465 63.158 22.49 7.72 37.72 4.26
278 283 3.646976 CGACGGCGAGGATAGCGA 61.647 66.667 16.62 0.00 37.72 4.93
323 328 1.372004 CGTACCGCGTCTTCAACCA 60.372 57.895 4.92 0.00 35.54 3.67
324 329 0.940519 CGTACCGCGTCTTCAACCAA 60.941 55.000 4.92 0.00 35.54 3.67
333 338 3.323243 CGTCTTCAACCAATACTTCCGT 58.677 45.455 0.00 0.00 0.00 4.69
376 381 0.613012 GAAGGGCAAGGGCAGTCATT 60.613 55.000 0.00 0.00 43.71 2.57
433 439 4.667573 TGGTAGTCCAATGGCATGTTTAA 58.332 39.130 0.00 0.00 41.25 1.52
448 454 6.458751 GGCATGTTTAATGTAGTGTGATGGAG 60.459 42.308 0.00 0.00 0.00 3.86
450 456 7.466805 CATGTTTAATGTAGTGTGATGGAGTG 58.533 38.462 0.00 0.00 0.00 3.51
465 471 4.501714 GTGGCCGGACGATGCGTA 62.502 66.667 5.05 0.00 41.37 4.42
467 473 3.036084 GGCCGGACGATGCGTATG 61.036 66.667 5.05 0.00 41.37 2.39
495 501 4.536065 ACGTTGTTGCATGAGTTTGTATG 58.464 39.130 0.00 0.00 0.00 2.39
524 530 5.665360 TGAGATATGGTAATTGAGGTGTCCA 59.335 40.000 0.00 0.00 0.00 4.02
552 558 8.644374 TGTGGATTATATTATTTAAGGGGTGC 57.356 34.615 0.00 0.00 0.00 5.01
553 559 7.672239 TGTGGATTATATTATTTAAGGGGTGCC 59.328 37.037 0.00 0.00 0.00 5.01
554 560 7.123697 GTGGATTATATTATTTAAGGGGTGCCC 59.876 40.741 0.00 0.00 45.90 5.36
563 569 3.219198 GGGGTGCCCGATCAATGC 61.219 66.667 0.54 0.00 36.85 3.56
564 570 3.219198 GGGTGCCCGATCAATGCC 61.219 66.667 0.00 0.00 0.00 4.40
565 571 2.124151 GGTGCCCGATCAATGCCT 60.124 61.111 0.00 0.00 0.00 4.75
566 572 1.148273 GGTGCCCGATCAATGCCTA 59.852 57.895 0.00 0.00 0.00 3.93
567 573 1.166531 GGTGCCCGATCAATGCCTAC 61.167 60.000 0.00 0.00 0.00 3.18
568 574 1.227527 TGCCCGATCAATGCCTACG 60.228 57.895 0.00 0.00 0.00 3.51
569 575 1.227556 GCCCGATCAATGCCTACGT 60.228 57.895 0.00 0.00 0.00 3.57
570 576 0.032952 GCCCGATCAATGCCTACGTA 59.967 55.000 0.00 0.00 0.00 3.57
571 577 1.779569 CCCGATCAATGCCTACGTAC 58.220 55.000 0.00 0.00 0.00 3.67
572 578 1.405461 CCGATCAATGCCTACGTACG 58.595 55.000 15.01 15.01 0.00 3.67
573 579 1.268896 CCGATCAATGCCTACGTACGT 60.269 52.381 25.98 25.98 0.00 3.57
574 580 1.779157 CGATCAATGCCTACGTACGTG 59.221 52.381 30.25 18.87 0.00 4.49
575 581 1.521423 GATCAATGCCTACGTACGTGC 59.479 52.381 30.25 24.81 0.00 5.34
576 582 0.458889 TCAATGCCTACGTACGTGCC 60.459 55.000 30.25 17.56 0.00 5.01
577 583 0.459585 CAATGCCTACGTACGTGCCT 60.460 55.000 30.25 15.94 0.00 4.75
578 584 0.459585 AATGCCTACGTACGTGCCTG 60.460 55.000 30.25 15.90 0.00 4.85
579 585 2.202703 GCCTACGTACGTGCCTGG 60.203 66.667 30.25 23.97 0.00 4.45
580 586 2.493030 CCTACGTACGTGCCTGGG 59.507 66.667 30.25 18.43 0.00 4.45
581 587 2.202703 CTACGTACGTGCCTGGGC 60.203 66.667 30.25 4.43 42.35 5.36
582 588 4.118995 TACGTACGTGCCTGGGCG 62.119 66.667 30.25 0.00 45.51 6.13
589 595 4.043200 GTGCCTGGGCGCTTTCAC 62.043 66.667 16.79 5.25 46.85 3.18
590 596 4.577677 TGCCTGGGCGCTTTCACA 62.578 61.111 7.64 0.00 45.51 3.58
591 597 3.741476 GCCTGGGCGCTTTCACAG 61.741 66.667 7.64 8.37 0.00 3.66
592 598 3.058160 CCTGGGCGCTTTCACAGG 61.058 66.667 7.64 13.58 43.87 4.00
593 599 3.741476 CTGGGCGCTTTCACAGGC 61.741 66.667 7.64 0.00 0.00 4.85
598 604 4.210447 CGCTTTCACAGGCGTTTG 57.790 55.556 0.00 0.00 45.34 2.93
599 605 1.646540 CGCTTTCACAGGCGTTTGA 59.353 52.632 0.00 0.00 45.34 2.69
600 606 0.384725 CGCTTTCACAGGCGTTTGAG 60.385 55.000 0.00 0.00 45.34 3.02
601 607 0.040067 GCTTTCACAGGCGTTTGAGG 60.040 55.000 0.00 0.00 0.00 3.86
602 608 0.593128 CTTTCACAGGCGTTTGAGGG 59.407 55.000 0.00 0.00 0.00 4.30
603 609 0.181587 TTTCACAGGCGTTTGAGGGA 59.818 50.000 0.00 0.00 0.00 4.20
604 610 0.534203 TTCACAGGCGTTTGAGGGAC 60.534 55.000 0.00 0.00 0.00 4.46
605 611 1.966451 CACAGGCGTTTGAGGGACC 60.966 63.158 0.00 0.00 0.00 4.46
606 612 2.742372 CAGGCGTTTGAGGGACCG 60.742 66.667 0.00 0.00 0.00 4.79
607 613 2.920912 AGGCGTTTGAGGGACCGA 60.921 61.111 0.00 0.00 0.00 4.69
608 614 2.031465 GGCGTTTGAGGGACCGAA 59.969 61.111 0.00 0.00 0.00 4.30
609 615 1.376812 GGCGTTTGAGGGACCGAAT 60.377 57.895 0.00 0.00 0.00 3.34
610 616 0.958876 GGCGTTTGAGGGACCGAATT 60.959 55.000 0.00 0.00 0.00 2.17
611 617 0.879090 GCGTTTGAGGGACCGAATTT 59.121 50.000 0.00 0.00 0.00 1.82
612 618 1.401018 GCGTTTGAGGGACCGAATTTG 60.401 52.381 0.00 0.00 0.00 2.32
613 619 1.401018 CGTTTGAGGGACCGAATTTGC 60.401 52.381 0.00 0.00 0.00 3.68
614 620 1.611491 GTTTGAGGGACCGAATTTGCA 59.389 47.619 0.00 0.00 0.00 4.08
615 621 1.988293 TTGAGGGACCGAATTTGCAA 58.012 45.000 0.00 0.00 0.00 4.08
616 622 1.533625 TGAGGGACCGAATTTGCAAG 58.466 50.000 0.00 0.00 0.00 4.01
617 623 1.202879 TGAGGGACCGAATTTGCAAGT 60.203 47.619 0.00 0.00 0.00 3.16
618 624 1.468914 GAGGGACCGAATTTGCAAGTC 59.531 52.381 0.00 3.10 0.00 3.01
619 625 0.526211 GGGACCGAATTTGCAAGTCC 59.474 55.000 20.97 20.97 45.15 3.85
620 626 0.526211 GGACCGAATTTGCAAGTCCC 59.474 55.000 19.26 6.82 40.97 4.46
624 630 4.448210 GACCGAATTTGCAAGTCCCTATA 58.552 43.478 0.00 0.00 0.00 1.31
669 675 0.179145 CGGTTTCGCGGTATGTCTCT 60.179 55.000 6.13 0.00 0.00 3.10
677 683 2.095008 CGCGGTATGTCTCTATCTGCAT 60.095 50.000 0.00 0.00 0.00 3.96
798 805 3.243873 CCATCTCTTTCCATCCGATTCGA 60.244 47.826 7.83 0.00 0.00 3.71
884 891 0.314578 CTCATTCGCATCGTCGTTGC 60.315 55.000 16.55 16.55 36.74 4.17
1421 1949 6.341316 GCTAATCAGTGATGAAAGTGACCTA 58.659 40.000 6.34 0.00 32.42 3.08
1529 2137 9.821662 CATTTAGCCTAACAACAAAAGTACTAC 57.178 33.333 0.00 0.00 0.00 2.73
1605 2322 7.575414 ATCTGATAGGATGATCGGTGTATAC 57.425 40.000 0.00 0.00 34.36 1.47
1607 2324 6.374613 TCTGATAGGATGATCGGTGTATACAC 59.625 42.308 25.00 25.00 45.72 2.90
1620 2337 4.124851 TGTATACACACACACACACACA 57.875 40.909 0.08 0.00 0.00 3.72
1621 2338 3.866327 TGTATACACACACACACACACAC 59.134 43.478 0.08 0.00 0.00 3.82
1622 2339 2.457366 TACACACACACACACACACA 57.543 45.000 0.00 0.00 0.00 3.72
1624 2341 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
1625 2342 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1627 2344 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1629 2346 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1631 2348 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1634 2351 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
1635 2352 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1636 2353 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
1637 2354 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1638 2355 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
1639 2356 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1648 2429 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
1649 2430 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
2142 2950 2.034048 GAGGGATGAGGGCTTCGACC 62.034 65.000 3.92 3.92 0.00 4.79
2153 2961 2.484889 GGCTTCGACCATTATCCAGTC 58.515 52.381 0.00 0.00 0.00 3.51
2183 2991 0.321122 CCTTGAAGGAGCTTCGCACT 60.321 55.000 4.95 0.00 42.78 4.40
2185 2993 0.681733 TTGAAGGAGCTTCGCACTCT 59.318 50.000 0.00 0.00 42.78 3.24
2338 3173 2.301346 GCCCTTGATACCATGTTCCAG 58.699 52.381 0.00 0.00 0.00 3.86
2413 3248 6.564557 ATTTATTTGGCAATCATCCTTGGT 57.435 33.333 0.00 0.00 0.00 3.67
2467 3302 0.393537 CACCTCAGGAGATTGGCACC 60.394 60.000 0.00 0.00 0.00 5.01
2517 3352 4.411256 TCTTTACTCAGGTTTGACCGTT 57.589 40.909 0.00 0.00 44.90 4.44
2718 3804 0.823769 TCGGTAGGATCGCATCTGCT 60.824 55.000 0.09 0.00 39.32 4.24
2732 3820 5.121768 TCGCATCTGCTAAAACTACCTTTTC 59.878 40.000 0.09 0.00 39.32 2.29
2738 3826 4.214758 TGCTAAAACTACCTTTTCGCCTTC 59.785 41.667 0.00 0.00 38.96 3.46
2808 3901 4.371624 ACCATCACAGACCAATTCTCAA 57.628 40.909 0.00 0.00 28.96 3.02
2913 4012 4.283722 ACTGTCTTGGAGTTACACTAAGGG 59.716 45.833 6.14 1.33 0.00 3.95
2979 4078 5.516339 GGAAGGTATGCAACAAATTTGATCG 59.484 40.000 24.64 12.47 0.00 3.69
3026 4127 5.533903 ACAACTGTGAGAATTCAGATGCTTT 59.466 36.000 8.44 0.00 37.77 3.51
3097 4202 1.063792 TGACCAACATGGCAGCCATAT 60.064 47.619 27.22 14.10 43.15 1.78
3098 4203 1.338973 GACCAACATGGCAGCCATATG 59.661 52.381 27.22 25.14 43.15 1.78
3518 4647 2.485302 GCAAATTTGTCCAGGTTTGGCT 60.485 45.455 19.03 0.00 44.63 4.75
3578 4831 7.286316 AGTCAATTCATCCTTGTCACTTCTTTT 59.714 33.333 0.00 0.00 0.00 2.27
3674 4934 9.780186 AGTACCTGAATATTTATGTTAGAAGCC 57.220 33.333 0.00 0.00 0.00 4.35
3706 4968 1.201965 GCGCTTACTCATGTGCTTCAC 60.202 52.381 0.00 0.00 36.83 3.18
3854 5120 6.152492 GCTACTACTTACACTGTTACTCCCTT 59.848 42.308 0.00 0.00 0.00 3.95
4015 5281 1.867363 ACGGAGGGAGTAGAAAGCAT 58.133 50.000 0.00 0.00 0.00 3.79
4016 5282 2.188817 ACGGAGGGAGTAGAAAGCATT 58.811 47.619 0.00 0.00 0.00 3.56
4048 5315 3.695830 TTACAAGCTCGTTGAAGGGAT 57.304 42.857 0.00 0.00 38.60 3.85
4267 5534 4.745478 TCCACTGGGTTTGTCATACTTGAC 60.745 45.833 0.00 0.00 43.01 3.18
4282 5549 9.882743 GTCATACTTGACGAACAGGGAAATCCT 62.883 44.444 0.00 0.00 44.05 3.24
4323 5590 7.860373 TCGTTGAATTTTCTAAGTTTGGTGATG 59.140 33.333 0.00 0.00 0.00 3.07
4332 5599 0.385473 GTTTGGTGATGGTGTTCGCG 60.385 55.000 0.00 0.00 0.00 5.87
4433 5701 2.892425 GCCACCGATCGGCTTCTG 60.892 66.667 33.62 22.93 46.56 3.02
4607 5875 5.016173 TGGCCATTTATCTAAACTGCTTGT 58.984 37.500 0.00 0.00 0.00 3.16
4655 5939 3.619483 TGTTCACGGTAGTCAACTTGTTG 59.381 43.478 7.13 7.13 0.00 3.33
4751 7544 7.390162 TGTGATTTGACATGTTATTGTGCTCTA 59.610 33.333 0.00 0.00 0.00 2.43
4783 7576 9.102757 AGTTGCAATGATAAGTGTACTATGAAG 57.897 33.333 0.59 0.00 0.00 3.02
4795 7588 9.561069 AAGTGTACTATGAAGAAACAAGATGTT 57.439 29.630 0.00 0.00 43.41 2.71
4802 7595 9.282247 CTATGAAGAAACAAGATGTTATTGTGC 57.718 33.333 0.00 0.00 40.14 4.57
4803 7596 7.275888 TGAAGAAACAAGATGTTATTGTGCT 57.724 32.000 0.00 0.00 40.14 4.40
4804 7597 7.362662 TGAAGAAACAAGATGTTATTGTGCTC 58.637 34.615 0.00 0.00 40.14 4.26
4805 7598 7.229306 TGAAGAAACAAGATGTTATTGTGCTCT 59.771 33.333 0.00 0.00 40.14 4.09
4806 7599 6.906659 AGAAACAAGATGTTATTGTGCTCTG 58.093 36.000 0.00 0.00 40.14 3.35
4807 7600 6.712095 AGAAACAAGATGTTATTGTGCTCTGA 59.288 34.615 0.00 0.00 40.14 3.27
4808 7601 5.869753 ACAAGATGTTATTGTGCTCTGAC 57.130 39.130 0.00 0.00 39.36 3.51
4809 7602 5.308014 ACAAGATGTTATTGTGCTCTGACA 58.692 37.500 0.00 0.00 39.36 3.58
4810 7603 5.764686 ACAAGATGTTATTGTGCTCTGACAA 59.235 36.000 0.00 0.00 39.36 3.18
4811 7604 6.262944 ACAAGATGTTATTGTGCTCTGACAAA 59.737 34.615 0.00 0.00 39.36 2.83
4812 7605 6.882610 AGATGTTATTGTGCTCTGACAAAA 57.117 33.333 0.00 0.00 39.25 2.44
4813 7606 6.906659 AGATGTTATTGTGCTCTGACAAAAG 58.093 36.000 0.00 0.00 39.25 2.27
4814 7607 6.488006 AGATGTTATTGTGCTCTGACAAAAGT 59.512 34.615 0.00 0.00 39.25 2.66
4815 7608 6.449635 TGTTATTGTGCTCTGACAAAAGTT 57.550 33.333 0.00 0.00 39.25 2.66
4816 7609 6.264832 TGTTATTGTGCTCTGACAAAAGTTG 58.735 36.000 0.00 0.00 39.25 3.16
4817 7610 2.849880 TGTGCTCTGACAAAAGTTGC 57.150 45.000 0.00 0.00 0.00 4.17
4818 7611 2.090760 TGTGCTCTGACAAAAGTTGCA 58.909 42.857 0.00 0.00 0.00 4.08
4819 7612 2.491298 TGTGCTCTGACAAAAGTTGCAA 59.509 40.909 0.00 0.00 32.73 4.08
4820 7613 3.130869 TGTGCTCTGACAAAAGTTGCAAT 59.869 39.130 0.59 0.00 32.73 3.56
4821 7614 3.488310 GTGCTCTGACAAAAGTTGCAATG 59.512 43.478 0.59 0.00 32.73 2.82
4822 7615 3.380954 TGCTCTGACAAAAGTTGCAATGA 59.619 39.130 0.59 0.00 0.00 2.57
4823 7616 4.038282 TGCTCTGACAAAAGTTGCAATGAT 59.962 37.500 0.59 0.00 0.00 2.45
4824 7617 5.241285 TGCTCTGACAAAAGTTGCAATGATA 59.759 36.000 0.59 0.00 0.00 2.15
4825 7618 6.151691 GCTCTGACAAAAGTTGCAATGATAA 58.848 36.000 0.59 0.00 0.00 1.75
4826 7619 6.307318 GCTCTGACAAAAGTTGCAATGATAAG 59.693 38.462 0.59 0.00 0.00 1.73
4827 7620 7.275888 TCTGACAAAAGTTGCAATGATAAGT 57.724 32.000 0.59 0.00 0.00 2.24
4828 7621 7.140705 TCTGACAAAAGTTGCAATGATAAGTG 58.859 34.615 0.59 0.00 0.00 3.16
4829 7622 6.804677 TGACAAAAGTTGCAATGATAAGTGT 58.195 32.000 0.59 1.10 0.00 3.55
4830 7623 7.935520 TGACAAAAGTTGCAATGATAAGTGTA 58.064 30.769 0.59 0.00 0.00 2.90
4831 7624 7.860373 TGACAAAAGTTGCAATGATAAGTGTAC 59.140 33.333 0.59 0.00 0.00 2.90
4832 7625 7.940850 ACAAAAGTTGCAATGATAAGTGTACT 58.059 30.769 0.59 0.00 0.00 2.73
4833 7626 9.062524 ACAAAAGTTGCAATGATAAGTGTACTA 57.937 29.630 0.59 0.00 0.00 1.82
4836 7629 9.448438 AAAGTTGCAATGATAAGTGTACTATGA 57.552 29.630 0.59 0.00 0.00 2.15
4837 7630 9.448438 AAGTTGCAATGATAAGTGTACTATGAA 57.552 29.630 0.59 0.00 0.00 2.57
4838 7631 9.102757 AGTTGCAATGATAAGTGTACTATGAAG 57.897 33.333 0.59 0.00 0.00 3.02
4839 7632 9.098355 GTTGCAATGATAAGTGTACTATGAAGA 57.902 33.333 0.59 0.00 0.00 2.87
4840 7633 9.665719 TTGCAATGATAAGTGTACTATGAAGAA 57.334 29.630 0.00 0.00 0.00 2.52
4891 7699 6.072673 CCTTTTCTGAACCAACCACATACTAC 60.073 42.308 0.00 0.00 0.00 2.73
5083 7897 5.630121 TGAAGCTCCTCCTTTCAATGTTTA 58.370 37.500 0.00 0.00 0.00 2.01
5109 7931 7.170320 ACAATCTCTTGTTTGCATTTCATGAAC 59.830 33.333 7.89 0.00 43.05 3.18
5110 7932 5.531634 TCTCTTGTTTGCATTTCATGAACC 58.468 37.500 7.89 0.32 0.00 3.62
5111 7933 4.630111 TCTTGTTTGCATTTCATGAACCC 58.370 39.130 7.89 0.00 0.00 4.11
5137 7959 1.068055 GTCAATGTTGCTCTTGCCTGG 60.068 52.381 0.00 0.00 38.71 4.45
5388 8212 6.429078 TCTTTTCTGATGTTCAGTTCAGATGG 59.571 38.462 3.69 0.00 45.66 3.51
5418 8250 6.298361 TGGACACATGTATAATGAGGGAATG 58.702 40.000 0.00 0.00 0.00 2.67
5423 8255 4.993705 TGTATAATGAGGGAATGGGGAC 57.006 45.455 0.00 0.00 0.00 4.46
5570 8402 4.112634 AGCTATAAGAGACCTGAGGGAG 57.887 50.000 2.38 0.00 36.25 4.30
5580 8444 1.431243 ACCTGAGGGAGTGACTCTTCT 59.569 52.381 12.92 10.27 35.98 2.85
5591 8455 6.398918 GGAGTGACTCTTCTTAATGCAAGTA 58.601 40.000 12.92 0.00 35.58 2.24
5592 8456 6.311690 GGAGTGACTCTTCTTAATGCAAGTAC 59.688 42.308 12.92 0.00 35.58 2.73
5593 8457 6.998802 AGTGACTCTTCTTAATGCAAGTACT 58.001 36.000 0.00 0.00 35.58 2.73
5594 8458 7.093992 AGTGACTCTTCTTAATGCAAGTACTC 58.906 38.462 0.00 0.00 35.58 2.59
5595 8459 7.039363 AGTGACTCTTCTTAATGCAAGTACTCT 60.039 37.037 0.00 0.00 35.58 3.24
5670 8537 3.826157 GTGTTCATTCAGTTCATTGGGGA 59.174 43.478 0.00 0.00 0.00 4.81
5675 8542 3.524095 TTCAGTTCATTGGGGATGTGT 57.476 42.857 0.00 0.00 37.06 3.72
5722 8589 7.791029 TGTATTGTATGTCCTCAGCTCATTTA 58.209 34.615 0.00 0.00 0.00 1.40
5791 8664 7.601856 TGAGGGTTTTTATGTCATCACATTTC 58.398 34.615 0.00 0.00 40.66 2.17
5861 8737 6.051717 AGTTGCATCATGTAGTGTCCTTATC 58.948 40.000 0.00 0.00 0.00 1.75
5863 8739 5.604565 TGCATCATGTAGTGTCCTTATCAG 58.395 41.667 0.00 0.00 0.00 2.90
5864 8740 5.363580 TGCATCATGTAGTGTCCTTATCAGA 59.636 40.000 0.00 0.00 0.00 3.27
5865 8741 5.694006 GCATCATGTAGTGTCCTTATCAGAC 59.306 44.000 0.00 0.00 34.72 3.51
5866 8742 6.462207 GCATCATGTAGTGTCCTTATCAGACT 60.462 42.308 0.00 0.00 35.21 3.24
5867 8743 7.255625 GCATCATGTAGTGTCCTTATCAGACTA 60.256 40.741 0.00 0.00 35.21 2.59
5868 8744 8.801299 CATCATGTAGTGTCCTTATCAGACTAT 58.199 37.037 0.00 0.00 35.21 2.12
5994 8887 7.497249 TCCAATTTGTGTTGGGAAAAACAATAG 59.503 33.333 5.89 0.00 46.89 1.73
6035 8928 5.333645 CGCTTCAATACAACTCTATGGCATC 60.334 44.000 1.65 0.00 0.00 3.91
6061 8954 0.040058 TGACCTCTGCATGCCCAAAT 59.960 50.000 16.68 0.00 0.00 2.32
6062 8955 1.188863 GACCTCTGCATGCCCAAATT 58.811 50.000 16.68 0.00 0.00 1.82
6063 8956 1.551883 GACCTCTGCATGCCCAAATTT 59.448 47.619 16.68 0.00 0.00 1.82
6064 8957 1.980036 ACCTCTGCATGCCCAAATTTT 59.020 42.857 16.68 0.00 0.00 1.82
6089 8982 8.429493 TTTATCATTGTGACTTGAGCTATCTG 57.571 34.615 0.00 0.00 0.00 2.90
6093 8990 7.785033 TCATTGTGACTTGAGCTATCTGAATA 58.215 34.615 0.00 0.00 0.00 1.75
6149 9209 4.946157 AGGTGCTCATATTTTGGTCAAGAG 59.054 41.667 0.00 0.00 0.00 2.85
6156 9216 5.872617 TCATATTTTGGTCAAGAGTACACCG 59.127 40.000 0.00 0.00 32.27 4.94
6158 9218 3.547054 TTTGGTCAAGAGTACACCGTT 57.453 42.857 0.00 0.00 32.27 4.44
6161 9221 4.445452 TGGTCAAGAGTACACCGTTATC 57.555 45.455 0.00 0.00 32.27 1.75
6163 9223 4.281435 TGGTCAAGAGTACACCGTTATCAA 59.719 41.667 0.00 0.00 32.27 2.57
6188 9248 5.505286 CAGCAGAACAAAATCCATATCGAC 58.495 41.667 0.00 0.00 0.00 4.20
6206 9266 1.732259 GACGACTTTATGCACACCCTG 59.268 52.381 0.00 0.00 0.00 4.45
6215 9331 2.772739 GCACACCCTGCATAGACAG 58.227 57.895 0.00 0.00 46.29 3.51
6232 9348 2.808543 GACAGCTAGTTTGACTTGTGGG 59.191 50.000 3.79 0.00 0.00 4.61
6240 9356 0.108585 TTGACTTGTGGGGAGCTCAC 59.891 55.000 17.19 12.85 35.82 3.51
6276 9392 4.516323 GCAAGATGGGCCAAAATTTACAT 58.484 39.130 11.89 0.00 0.00 2.29
6358 9475 4.457496 CAGACCGCGTGCATCCCT 62.457 66.667 4.92 0.00 0.00 4.20
6359 9476 3.706373 AGACCGCGTGCATCCCTT 61.706 61.111 4.92 0.00 0.00 3.95
6375 9492 4.053469 TCCCTTTTTGTGTGCTAAAAGC 57.947 40.909 0.00 0.00 42.15 3.51
6392 9509 2.470983 AGCTGAAGGAGTCAAGCTTC 57.529 50.000 0.00 2.78 37.41 3.86
6405 9522 1.172812 AAGCTTCCAAGTCAACCGCC 61.173 55.000 0.00 0.00 0.00 6.13
6406 9523 1.896660 GCTTCCAAGTCAACCGCCA 60.897 57.895 0.00 0.00 0.00 5.69
6407 9524 1.949257 CTTCCAAGTCAACCGCCAC 59.051 57.895 0.00 0.00 0.00 5.01
6408 9525 0.817634 CTTCCAAGTCAACCGCCACA 60.818 55.000 0.00 0.00 0.00 4.17
6409 9526 0.179004 TTCCAAGTCAACCGCCACAT 60.179 50.000 0.00 0.00 0.00 3.21
6410 9527 0.605319 TCCAAGTCAACCGCCACATC 60.605 55.000 0.00 0.00 0.00 3.06
6411 9528 0.888736 CCAAGTCAACCGCCACATCA 60.889 55.000 0.00 0.00 0.00 3.07
6412 9529 0.950836 CAAGTCAACCGCCACATCAA 59.049 50.000 0.00 0.00 0.00 2.57
6413 9530 1.541147 CAAGTCAACCGCCACATCAAT 59.459 47.619 0.00 0.00 0.00 2.57
6414 9531 1.167851 AGTCAACCGCCACATCAATG 58.832 50.000 0.00 0.00 0.00 2.82
6415 9532 1.164411 GTCAACCGCCACATCAATGA 58.836 50.000 0.00 0.00 0.00 2.57
6416 9533 1.131126 GTCAACCGCCACATCAATGAG 59.869 52.381 0.00 0.00 0.00 2.90
6417 9534 1.003003 TCAACCGCCACATCAATGAGA 59.997 47.619 0.00 0.00 0.00 3.27
6418 9535 2.019249 CAACCGCCACATCAATGAGAT 58.981 47.619 0.00 0.00 37.48 2.75
6419 9536 1.959042 ACCGCCACATCAATGAGATC 58.041 50.000 0.00 0.00 33.72 2.75
6420 9537 1.210234 ACCGCCACATCAATGAGATCA 59.790 47.619 0.00 0.00 33.72 2.92
6421 9538 1.600957 CCGCCACATCAATGAGATCAC 59.399 52.381 0.00 0.00 33.72 3.06
6422 9539 1.600957 CGCCACATCAATGAGATCACC 59.399 52.381 0.00 0.00 33.72 4.02
6423 9540 2.646930 GCCACATCAATGAGATCACCA 58.353 47.619 0.00 0.00 33.72 4.17
6424 9541 2.357009 GCCACATCAATGAGATCACCAC 59.643 50.000 0.00 0.00 33.72 4.16
6425 9542 2.947652 CCACATCAATGAGATCACCACC 59.052 50.000 0.00 0.00 33.72 4.61
6426 9543 2.947652 CACATCAATGAGATCACCACCC 59.052 50.000 0.00 0.00 33.72 4.61
6427 9544 2.577563 ACATCAATGAGATCACCACCCA 59.422 45.455 0.00 0.00 33.72 4.51
6428 9545 3.203710 ACATCAATGAGATCACCACCCAT 59.796 43.478 0.00 0.00 33.72 4.00
6429 9546 4.413189 ACATCAATGAGATCACCACCCATA 59.587 41.667 0.00 0.00 33.72 2.74
6430 9547 5.074102 ACATCAATGAGATCACCACCCATAT 59.926 40.000 0.00 0.00 33.72 1.78
6431 9548 5.651612 TCAATGAGATCACCACCCATATT 57.348 39.130 0.00 0.00 0.00 1.28
6432 9549 5.624159 TCAATGAGATCACCACCCATATTC 58.376 41.667 0.00 0.00 0.00 1.75
6433 9550 4.647564 ATGAGATCACCACCCATATTCC 57.352 45.455 0.00 0.00 0.00 3.01
6434 9551 3.668821 TGAGATCACCACCCATATTCCT 58.331 45.455 0.00 0.00 0.00 3.36
6435 9552 4.047166 TGAGATCACCACCCATATTCCTT 58.953 43.478 0.00 0.00 0.00 3.36
6436 9553 5.223655 TGAGATCACCACCCATATTCCTTA 58.776 41.667 0.00 0.00 0.00 2.69
6437 9554 5.669904 TGAGATCACCACCCATATTCCTTAA 59.330 40.000 0.00 0.00 0.00 1.85
6438 9555 6.332635 TGAGATCACCACCCATATTCCTTAAT 59.667 38.462 0.00 0.00 0.00 1.40
6439 9556 7.147141 TGAGATCACCACCCATATTCCTTAATT 60.147 37.037 0.00 0.00 0.00 1.40
6440 9557 7.234355 AGATCACCACCCATATTCCTTAATTC 58.766 38.462 0.00 0.00 0.00 2.17
6441 9558 5.701224 TCACCACCCATATTCCTTAATTCC 58.299 41.667 0.00 0.00 0.00 3.01
6442 9559 4.832823 CACCACCCATATTCCTTAATTCCC 59.167 45.833 0.00 0.00 0.00 3.97
6443 9560 4.737092 ACCACCCATATTCCTTAATTCCCT 59.263 41.667 0.00 0.00 0.00 4.20
6444 9561 5.079643 CCACCCATATTCCTTAATTCCCTG 58.920 45.833 0.00 0.00 0.00 4.45
6445 9562 5.079643 CACCCATATTCCTTAATTCCCTGG 58.920 45.833 0.00 0.00 0.00 4.45
6446 9563 4.988221 ACCCATATTCCTTAATTCCCTGGA 59.012 41.667 0.00 0.00 0.00 3.86
6447 9564 5.162980 ACCCATATTCCTTAATTCCCTGGAC 60.163 44.000 0.00 0.00 0.00 4.02
6448 9565 5.162991 CCCATATTCCTTAATTCCCTGGACA 60.163 44.000 0.00 0.00 0.00 4.02
6449 9566 6.006449 CCATATTCCTTAATTCCCTGGACAG 58.994 44.000 0.00 0.00 0.00 3.51
6463 9580 2.204463 TGGACAGGCCATAAGAATCCA 58.796 47.619 5.01 3.94 43.33 3.41
6464 9581 2.580322 TGGACAGGCCATAAGAATCCAA 59.420 45.455 5.01 0.00 43.33 3.53
6465 9582 2.952310 GGACAGGCCATAAGAATCCAAC 59.048 50.000 5.01 0.00 36.34 3.77
6466 9583 3.372025 GGACAGGCCATAAGAATCCAACT 60.372 47.826 5.01 0.00 36.34 3.16
6467 9584 3.624777 ACAGGCCATAAGAATCCAACTG 58.375 45.455 5.01 0.00 0.00 3.16
6468 9585 3.266772 ACAGGCCATAAGAATCCAACTGA 59.733 43.478 5.01 0.00 0.00 3.41
6469 9586 3.629398 CAGGCCATAAGAATCCAACTGAC 59.371 47.826 5.01 0.00 0.00 3.51
6470 9587 3.266772 AGGCCATAAGAATCCAACTGACA 59.733 43.478 5.01 0.00 0.00 3.58
6471 9588 4.079558 AGGCCATAAGAATCCAACTGACAT 60.080 41.667 5.01 0.00 0.00 3.06
6472 9589 5.132648 AGGCCATAAGAATCCAACTGACATA 59.867 40.000 5.01 0.00 0.00 2.29
6473 9590 6.006449 GGCCATAAGAATCCAACTGACATAT 58.994 40.000 0.00 0.00 0.00 1.78
6474 9591 6.491403 GGCCATAAGAATCCAACTGACATATT 59.509 38.462 0.00 0.00 0.00 1.28
6475 9592 7.665559 GGCCATAAGAATCCAACTGACATATTA 59.334 37.037 0.00 0.00 0.00 0.98
6476 9593 8.725148 GCCATAAGAATCCAACTGACATATTAG 58.275 37.037 0.00 0.00 0.00 1.73
6506 9623 9.823098 CATATTATGCTGTCTAATCTTCTTTGC 57.177 33.333 0.00 0.00 0.00 3.68
6507 9624 7.870509 ATTATGCTGTCTAATCTTCTTTGCA 57.129 32.000 0.00 0.00 0.00 4.08
6508 9625 5.557891 ATGCTGTCTAATCTTCTTTGCAC 57.442 39.130 0.00 0.00 0.00 4.57
6509 9626 3.433274 TGCTGTCTAATCTTCTTTGCACG 59.567 43.478 0.00 0.00 0.00 5.34
6510 9627 3.433615 GCTGTCTAATCTTCTTTGCACGT 59.566 43.478 0.00 0.00 0.00 4.49
6511 9628 4.625742 GCTGTCTAATCTTCTTTGCACGTA 59.374 41.667 0.00 0.00 0.00 3.57
6512 9629 5.120208 GCTGTCTAATCTTCTTTGCACGTAA 59.880 40.000 0.00 0.00 0.00 3.18
6513 9630 6.183360 GCTGTCTAATCTTCTTTGCACGTAAT 60.183 38.462 0.00 0.00 0.00 1.89
6514 9631 7.624344 GCTGTCTAATCTTCTTTGCACGTAATT 60.624 37.037 0.00 0.00 0.00 1.40
6515 9632 8.094798 TGTCTAATCTTCTTTGCACGTAATTT 57.905 30.769 0.00 0.00 0.00 1.82
6516 9633 9.210329 TGTCTAATCTTCTTTGCACGTAATTTA 57.790 29.630 0.00 0.00 0.00 1.40
6517 9634 9.690434 GTCTAATCTTCTTTGCACGTAATTTAG 57.310 33.333 0.00 0.00 0.00 1.85
6518 9635 9.647797 TCTAATCTTCTTTGCACGTAATTTAGA 57.352 29.630 0.00 0.00 0.00 2.10
6523 9640 9.959749 TCTTCTTTGCACGTAATTTAGAATTTT 57.040 25.926 0.00 0.00 0.00 1.82
6549 9666 6.746745 TGATTTCCGTTAAAATGGTACTCC 57.253 37.500 1.01 0.00 36.44 3.85
6550 9667 6.478129 TGATTTCCGTTAAAATGGTACTCCT 58.522 36.000 1.01 0.00 36.44 3.69
6551 9668 6.596497 TGATTTCCGTTAAAATGGTACTCCTC 59.404 38.462 1.01 0.00 36.44 3.71
6552 9669 4.476628 TCCGTTAAAATGGTACTCCTCC 57.523 45.455 1.01 0.00 36.44 4.30
6553 9670 3.119029 TCCGTTAAAATGGTACTCCTCCG 60.119 47.826 1.01 0.00 36.44 4.63
6554 9671 3.368739 CCGTTAAAATGGTACTCCTCCGT 60.369 47.826 0.00 0.00 34.23 4.69
6555 9672 4.248058 CGTTAAAATGGTACTCCTCCGTT 58.752 43.478 0.00 0.00 35.94 4.44
6556 9673 4.328169 CGTTAAAATGGTACTCCTCCGTTC 59.672 45.833 0.00 0.00 33.64 3.95
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
172 176 2.970324 GGCGCACGTGTTCCTTCA 60.970 61.111 18.38 0.00 0.00 3.02
174 178 4.250305 AGGGCGCACGTGTTCCTT 62.250 61.111 18.38 11.84 0.00 3.36
196 200 1.260538 ACCGCCTGATTCTGCTCTCA 61.261 55.000 0.00 0.00 0.00 3.27
216 221 3.321648 AGTCTGGCCATGGCACGA 61.322 61.111 36.56 27.48 44.11 4.35
277 282 0.658829 CGGATCTGCTCGTCATCGTC 60.659 60.000 0.00 0.00 38.33 4.20
278 283 1.356979 CGGATCTGCTCGTCATCGT 59.643 57.895 0.00 0.00 38.33 3.73
281 286 2.081425 GAGCCGGATCTGCTCGTCAT 62.081 60.000 13.71 0.00 45.05 3.06
333 338 3.068881 CCCTTGCCGTCCTTCTCA 58.931 61.111 0.00 0.00 0.00 3.27
376 381 2.195727 TGGCTATGGTGGAGTTCATCA 58.804 47.619 0.00 0.00 41.30 3.07
420 425 6.832520 TCACACTACATTAAACATGCCATT 57.167 33.333 0.00 0.00 0.00 3.16
421 426 6.183360 CCATCACACTACATTAAACATGCCAT 60.183 38.462 0.00 0.00 0.00 4.40
433 439 1.210478 GGCCACTCCATCACACTACAT 59.790 52.381 0.00 0.00 34.01 2.29
448 454 3.785189 ATACGCATCGTCCGGCCAC 62.785 63.158 2.24 0.00 41.54 5.01
450 456 3.036084 CATACGCATCGTCCGGCC 61.036 66.667 0.00 0.00 41.54 6.13
465 471 2.243056 TGCAACAACGTCGATGCAT 58.757 47.368 7.40 0.00 43.32 3.96
467 473 0.165727 TCATGCAACAACGTCGATGC 59.834 50.000 4.06 1.23 39.22 3.91
474 480 3.913763 CCATACAAACTCATGCAACAACG 59.086 43.478 0.00 0.00 0.00 4.10
477 483 5.981088 AATCCATACAAACTCATGCAACA 57.019 34.783 0.00 0.00 0.00 3.33
495 501 7.721399 ACACCTCAATTACCATATCTCAAATCC 59.279 37.037 0.00 0.00 0.00 3.01
549 555 1.498865 CGTAGGCATTGATCGGGCAC 61.499 60.000 7.87 0.00 0.00 5.01
550 556 1.227527 CGTAGGCATTGATCGGGCA 60.228 57.895 7.87 0.00 0.00 5.36
551 557 0.032952 TACGTAGGCATTGATCGGGC 59.967 55.000 0.00 0.00 0.00 6.13
552 558 1.779569 GTACGTAGGCATTGATCGGG 58.220 55.000 0.00 0.00 0.00 5.14
553 559 1.268896 ACGTACGTAGGCATTGATCGG 60.269 52.381 21.41 0.00 0.00 4.18
554 560 1.779157 CACGTACGTAGGCATTGATCG 59.221 52.381 22.34 5.15 0.00 3.69
555 561 1.521423 GCACGTACGTAGGCATTGATC 59.479 52.381 22.34 0.00 0.00 2.92
556 562 1.567504 GCACGTACGTAGGCATTGAT 58.432 50.000 22.34 0.00 0.00 2.57
557 563 0.458889 GGCACGTACGTAGGCATTGA 60.459 55.000 25.94 0.00 0.00 2.57
558 564 0.459585 AGGCACGTACGTAGGCATTG 60.460 55.000 30.44 17.22 0.00 2.82
559 565 0.459585 CAGGCACGTACGTAGGCATT 60.460 55.000 30.44 18.17 0.00 3.56
560 566 1.141019 CAGGCACGTACGTAGGCAT 59.859 57.895 30.44 22.90 0.00 4.40
561 567 2.569657 CAGGCACGTACGTAGGCA 59.430 61.111 30.44 0.00 0.00 4.75
562 568 2.202703 CCAGGCACGTACGTAGGC 60.203 66.667 22.34 24.42 0.00 3.93
563 569 2.493030 CCCAGGCACGTACGTAGG 59.507 66.667 22.34 18.86 0.00 3.18
564 570 2.202703 GCCCAGGCACGTACGTAG 60.203 66.667 22.34 16.04 41.49 3.51
565 571 4.118995 CGCCCAGGCACGTACGTA 62.119 66.667 22.34 0.00 42.06 3.57
569 575 4.323477 AAAGCGCCCAGGCACGTA 62.323 61.111 2.29 0.00 42.06 3.57
572 578 4.043200 GTGAAAGCGCCCAGGCAC 62.043 66.667 2.29 1.91 42.06 5.01
573 579 4.577677 TGTGAAAGCGCCCAGGCA 62.578 61.111 2.29 0.00 42.06 4.75
574 580 3.741476 CTGTGAAAGCGCCCAGGC 61.741 66.667 2.29 0.00 37.85 4.85
575 581 3.058160 CCTGTGAAAGCGCCCAGG 61.058 66.667 2.29 8.53 38.63 4.45
576 582 3.741476 GCCTGTGAAAGCGCCCAG 61.741 66.667 2.29 2.57 0.00 4.45
582 588 0.040067 CCTCAAACGCCTGTGAAAGC 60.040 55.000 0.00 0.00 0.00 3.51
583 589 0.593128 CCCTCAAACGCCTGTGAAAG 59.407 55.000 0.00 0.00 0.00 2.62
584 590 0.181587 TCCCTCAAACGCCTGTGAAA 59.818 50.000 0.00 0.00 0.00 2.69
585 591 0.534203 GTCCCTCAAACGCCTGTGAA 60.534 55.000 0.00 0.00 0.00 3.18
586 592 1.070786 GTCCCTCAAACGCCTGTGA 59.929 57.895 0.00 0.00 0.00 3.58
587 593 1.966451 GGTCCCTCAAACGCCTGTG 60.966 63.158 0.00 0.00 0.00 3.66
588 594 2.430367 GGTCCCTCAAACGCCTGT 59.570 61.111 0.00 0.00 0.00 4.00
589 595 2.725203 TTCGGTCCCTCAAACGCCTG 62.725 60.000 0.00 0.00 0.00 4.85
590 596 1.838073 ATTCGGTCCCTCAAACGCCT 61.838 55.000 0.00 0.00 0.00 5.52
591 597 0.958876 AATTCGGTCCCTCAAACGCC 60.959 55.000 0.00 0.00 0.00 5.68
592 598 0.879090 AAATTCGGTCCCTCAAACGC 59.121 50.000 0.00 0.00 0.00 4.84
593 599 1.401018 GCAAATTCGGTCCCTCAAACG 60.401 52.381 0.00 0.00 0.00 3.60
594 600 1.611491 TGCAAATTCGGTCCCTCAAAC 59.389 47.619 0.00 0.00 0.00 2.93
595 601 1.988293 TGCAAATTCGGTCCCTCAAA 58.012 45.000 0.00 0.00 0.00 2.69
596 602 1.885887 CTTGCAAATTCGGTCCCTCAA 59.114 47.619 0.00 0.00 0.00 3.02
597 603 1.202879 ACTTGCAAATTCGGTCCCTCA 60.203 47.619 0.00 0.00 0.00 3.86
598 604 1.468914 GACTTGCAAATTCGGTCCCTC 59.531 52.381 0.00 0.00 0.00 4.30
599 605 1.534729 GACTTGCAAATTCGGTCCCT 58.465 50.000 0.00 0.00 0.00 4.20
600 606 0.526211 GGACTTGCAAATTCGGTCCC 59.474 55.000 19.26 6.18 40.14 4.46
601 607 0.526211 GGGACTTGCAAATTCGGTCC 59.474 55.000 20.97 20.97 43.86 4.46
602 608 1.534729 AGGGACTTGCAAATTCGGTC 58.465 50.000 0.00 3.81 27.25 4.79
603 609 2.871096 TAGGGACTTGCAAATTCGGT 57.129 45.000 0.00 0.00 41.75 4.69
604 610 6.149474 CCTTATATAGGGACTTGCAAATTCGG 59.851 42.308 4.90 0.00 40.67 4.30
605 611 6.934645 TCCTTATATAGGGACTTGCAAATTCG 59.065 38.462 9.47 0.00 44.86 3.34
606 612 8.870075 ATCCTTATATAGGGACTTGCAAATTC 57.130 34.615 15.37 0.00 44.86 2.17
607 613 9.740710 GTATCCTTATATAGGGACTTGCAAATT 57.259 33.333 15.37 0.14 44.86 1.82
608 614 8.890472 TGTATCCTTATATAGGGACTTGCAAAT 58.110 33.333 15.37 0.00 44.86 2.32
609 615 8.270137 TGTATCCTTATATAGGGACTTGCAAA 57.730 34.615 15.37 0.00 44.86 3.68
610 616 7.865530 TGTATCCTTATATAGGGACTTGCAA 57.134 36.000 15.37 0.00 44.86 4.08
611 617 9.729550 ATATGTATCCTTATATAGGGACTTGCA 57.270 33.333 15.37 10.87 44.86 4.08
641 647 1.915093 CGCGAAACCGGATTCTACG 59.085 57.895 20.65 19.03 0.00 3.51
1529 2137 5.698545 GCCCAGTCATAAGCTAGTATCAAAG 59.301 44.000 0.00 0.00 0.00 2.77
1546 2206 2.489938 TGTAAATCCACAGCCCAGTC 57.510 50.000 0.00 0.00 0.00 3.51
1583 2247 6.151144 TGTGTATACACCGATCATCCTATCAG 59.849 42.308 28.67 0.00 45.88 2.90
1605 2322 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
1607 2324 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
1608 2325 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
1609 2326 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
1610 2327 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
1611 2328 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
1612 2329 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
1613 2330 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
1614 2331 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
1616 2333 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
1617 2334 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
1618 2335 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
1619 2336 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
1620 2337 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
1621 2338 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
1622 2339 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
1624 2341 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
1625 2342 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
1627 2344 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
1629 2346 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
1631 2348 1.155889 AGTGTGTGTGTGTGTGTGTG 58.844 50.000 0.00 0.00 0.00 3.82
1634 2351 3.259064 GAAGTAGTGTGTGTGTGTGTGT 58.741 45.455 0.00 0.00 0.00 3.72
1635 2352 2.281498 CGAAGTAGTGTGTGTGTGTGTG 59.719 50.000 0.00 0.00 0.00 3.82
1636 2353 2.094390 ACGAAGTAGTGTGTGTGTGTGT 60.094 45.455 0.00 0.00 41.94 3.72
1637 2354 2.281498 CACGAAGTAGTGTGTGTGTGTG 59.719 50.000 0.00 0.00 41.61 3.82
1638 2355 2.164827 TCACGAAGTAGTGTGTGTGTGT 59.835 45.455 0.00 0.00 41.61 3.72
1639 2356 2.534349 GTCACGAAGTAGTGTGTGTGTG 59.466 50.000 0.00 0.00 41.61 3.82
1648 2429 6.101332 TGTTTGTAAAGTGTCACGAAGTAGT 58.899 36.000 0.00 0.00 41.61 2.73
1649 2430 6.578020 TGTTTGTAAAGTGTCACGAAGTAG 57.422 37.500 0.00 0.00 41.61 2.57
2142 2950 6.459066 AGGACATACGATTGACTGGATAATG 58.541 40.000 0.00 0.00 0.00 1.90
2153 2961 3.557595 GCTCCTTCAAGGACATACGATTG 59.442 47.826 0.34 0.00 40.06 2.67
2338 3173 2.124278 GCAATCCGGTCCCCCTTC 60.124 66.667 0.00 0.00 0.00 3.46
2413 3248 3.883830 ATTGACACAACAACAAAGCCA 57.116 38.095 0.00 0.00 32.50 4.75
2467 3302 0.388907 CTTTTGCAACCCTCATGCGG 60.389 55.000 0.00 0.00 46.76 5.69
2670 3747 9.595823 GTAACTAATTGCTTCCTGTTATAGTCA 57.404 33.333 0.00 0.00 0.00 3.41
2671 3748 9.819267 AGTAACTAATTGCTTCCTGTTATAGTC 57.181 33.333 0.00 0.00 0.00 2.59
2685 3762 6.074463 CGATCCTACCGAAAGTAACTAATTGC 60.074 42.308 0.00 0.00 0.00 3.56
2700 3785 4.251760 GCAGATGCGATCCTACCG 57.748 61.111 0.00 0.00 0.00 4.02
2718 3804 6.887626 AATGAAGGCGAAAAGGTAGTTTTA 57.112 33.333 0.00 0.00 38.54 1.52
2913 4012 5.296151 TCTTTCCAGGACATATCACCATC 57.704 43.478 0.00 0.00 0.00 3.51
2979 4078 5.582665 GTCTATTTCTGTCTGACATGGGAAC 59.417 44.000 11.45 1.26 0.00 3.62
3097 4202 2.229792 GACCTGCAAATCCAAGACACA 58.770 47.619 0.00 0.00 0.00 3.72
3098 4203 2.030805 GTGACCTGCAAATCCAAGACAC 60.031 50.000 0.00 0.00 0.00 3.67
3674 4934 7.374228 CACATGAGTAAGCGCAGTTTATATTTG 59.626 37.037 11.47 0.00 35.30 2.32
3706 4968 4.753233 TGCAATTTATTTTGATGGACCCG 58.247 39.130 0.00 0.00 0.00 5.28
3881 5147 8.520351 CATCCATATGTAGTCCGTAGTGAATTA 58.480 37.037 1.24 0.00 0.00 1.40
3929 5195 6.515272 ACGGAGCAAAATGAGTGAATTTAT 57.485 33.333 0.00 0.00 0.00 1.40
3974 5240 9.075678 TCCGTTCCTAAATATAAGTCCTCTTAG 57.924 37.037 0.00 0.00 39.17 2.18
3978 5244 6.295180 CCCTCCGTTCCTAAATATAAGTCCTC 60.295 46.154 0.00 0.00 0.00 3.71
4015 5281 5.298276 ACGAGCTTGTAATGGACTTGAAAAA 59.702 36.000 4.25 0.00 0.00 1.94
4016 5282 4.819630 ACGAGCTTGTAATGGACTTGAAAA 59.180 37.500 4.25 0.00 0.00 2.29
4323 5590 1.373590 ATGGTTATGCCGCGAACACC 61.374 55.000 8.23 6.83 41.21 4.16
4433 5701 5.841957 AAACCTTATCATGGTCAGCATTC 57.158 39.130 0.00 0.00 36.69 2.67
4655 5939 7.486232 GGAGAGCATACTGATTTTTAAAAGCAC 59.514 37.037 4.15 0.00 0.00 4.40
4751 7544 9.231297 AGTACACTTATCATTGCAACTTATGTT 57.769 29.630 0.00 0.00 36.75 2.71
4783 7576 6.798959 GTCAGAGCACAATAACATCTTGTTTC 59.201 38.462 0.00 0.00 41.45 2.78
4789 7582 6.488006 ACTTTTGTCAGAGCACAATAACATCT 59.512 34.615 0.00 0.00 36.16 2.90
4790 7583 6.672147 ACTTTTGTCAGAGCACAATAACATC 58.328 36.000 0.00 0.00 36.16 3.06
4791 7584 6.639632 ACTTTTGTCAGAGCACAATAACAT 57.360 33.333 0.00 0.00 36.16 2.71
4792 7585 6.264832 CAACTTTTGTCAGAGCACAATAACA 58.735 36.000 0.00 0.00 36.16 2.41
4793 7586 5.173854 GCAACTTTTGTCAGAGCACAATAAC 59.826 40.000 0.00 0.00 36.16 1.89
4794 7587 5.163571 TGCAACTTTTGTCAGAGCACAATAA 60.164 36.000 0.00 0.00 36.16 1.40
4795 7588 4.337836 TGCAACTTTTGTCAGAGCACAATA 59.662 37.500 0.00 0.00 36.16 1.90
4796 7589 3.130869 TGCAACTTTTGTCAGAGCACAAT 59.869 39.130 0.00 0.00 36.16 2.71
4797 7590 2.491298 TGCAACTTTTGTCAGAGCACAA 59.509 40.909 0.00 0.00 34.36 3.33
4798 7591 2.090760 TGCAACTTTTGTCAGAGCACA 58.909 42.857 0.00 0.00 0.00 4.57
4799 7592 2.849880 TGCAACTTTTGTCAGAGCAC 57.150 45.000 0.00 0.00 0.00 4.40
4800 7593 3.380954 TCATTGCAACTTTTGTCAGAGCA 59.619 39.130 0.00 0.00 0.00 4.26
4801 7594 3.968649 TCATTGCAACTTTTGTCAGAGC 58.031 40.909 0.00 0.00 0.00 4.09
4802 7595 7.325338 CACTTATCATTGCAACTTTTGTCAGAG 59.675 37.037 0.00 0.00 0.00 3.35
4803 7596 7.140705 CACTTATCATTGCAACTTTTGTCAGA 58.859 34.615 0.00 0.00 0.00 3.27
4804 7597 6.919662 ACACTTATCATTGCAACTTTTGTCAG 59.080 34.615 0.00 0.00 0.00 3.51
4805 7598 6.804677 ACACTTATCATTGCAACTTTTGTCA 58.195 32.000 0.00 0.00 0.00 3.58
4806 7599 8.076178 AGTACACTTATCATTGCAACTTTTGTC 58.924 33.333 0.00 0.00 0.00 3.18
4807 7600 7.940850 AGTACACTTATCATTGCAACTTTTGT 58.059 30.769 0.00 1.78 0.00 2.83
4810 7603 9.448438 TCATAGTACACTTATCATTGCAACTTT 57.552 29.630 0.00 0.00 0.00 2.66
4811 7604 9.448438 TTCATAGTACACTTATCATTGCAACTT 57.552 29.630 0.00 0.00 0.00 2.66
4812 7605 9.102757 CTTCATAGTACACTTATCATTGCAACT 57.897 33.333 0.00 0.00 0.00 3.16
4813 7606 9.098355 TCTTCATAGTACACTTATCATTGCAAC 57.902 33.333 0.00 0.00 0.00 4.17
4814 7607 9.665719 TTCTTCATAGTACACTTATCATTGCAA 57.334 29.630 0.00 0.00 0.00 4.08
4815 7608 9.665719 TTTCTTCATAGTACACTTATCATTGCA 57.334 29.630 0.00 0.00 0.00 4.08
4816 7609 9.922305 GTTTCTTCATAGTACACTTATCATTGC 57.078 33.333 0.00 0.00 0.00 3.56
4824 7617 9.391006 TGTTTCTTGTTTCTTCATAGTACACTT 57.609 29.630 0.00 0.00 0.00 3.16
4825 7618 8.958119 TGTTTCTTGTTTCTTCATAGTACACT 57.042 30.769 0.00 0.00 0.00 3.55
4826 7619 9.813080 GATGTTTCTTGTTTCTTCATAGTACAC 57.187 33.333 0.00 0.00 0.00 2.90
4827 7620 9.778741 AGATGTTTCTTGTTTCTTCATAGTACA 57.221 29.630 0.00 0.00 0.00 2.90
4829 7622 9.996554 TCAGATGTTTCTTGTTTCTTCATAGTA 57.003 29.630 0.00 0.00 0.00 1.82
4830 7623 8.908786 TCAGATGTTTCTTGTTTCTTCATAGT 57.091 30.769 0.00 0.00 0.00 2.12
4831 7624 8.997323 ACTCAGATGTTTCTTGTTTCTTCATAG 58.003 33.333 0.00 0.00 0.00 2.23
4832 7625 8.908786 ACTCAGATGTTTCTTGTTTCTTCATA 57.091 30.769 0.00 0.00 0.00 2.15
4833 7626 7.500227 TGACTCAGATGTTTCTTGTTTCTTCAT 59.500 33.333 0.00 0.00 0.00 2.57
4834 7627 6.823182 TGACTCAGATGTTTCTTGTTTCTTCA 59.177 34.615 0.00 0.00 0.00 3.02
4835 7628 7.251704 TGACTCAGATGTTTCTTGTTTCTTC 57.748 36.000 0.00 0.00 0.00 2.87
4836 7629 7.630242 TTGACTCAGATGTTTCTTGTTTCTT 57.370 32.000 0.00 0.00 0.00 2.52
4837 7630 7.284034 ACATTGACTCAGATGTTTCTTGTTTCT 59.716 33.333 0.00 0.00 32.85 2.52
4838 7631 7.420800 ACATTGACTCAGATGTTTCTTGTTTC 58.579 34.615 0.00 0.00 32.85 2.78
4839 7632 7.338800 ACATTGACTCAGATGTTTCTTGTTT 57.661 32.000 0.00 0.00 32.85 2.83
4840 7633 6.949352 ACATTGACTCAGATGTTTCTTGTT 57.051 33.333 0.00 0.00 32.85 2.83
4846 7639 4.990526 AGGGAACATTGACTCAGATGTTT 58.009 39.130 15.08 4.11 44.17 2.83
5083 7897 6.751157 TCATGAAATGCAAACAAGAGATTGT 58.249 32.000 0.00 0.00 46.21 2.71
5109 7931 1.270550 GAGCAACATTGACTTGGTGGG 59.729 52.381 0.00 0.00 34.79 4.61
5110 7932 2.233271 AGAGCAACATTGACTTGGTGG 58.767 47.619 0.00 0.00 34.79 4.61
5111 7933 3.635331 CAAGAGCAACATTGACTTGGTG 58.365 45.455 16.83 0.00 38.80 4.17
5137 7959 3.735237 TCTCCACTGAACTTGTCTGTC 57.265 47.619 0.00 0.00 36.35 3.51
5240 8062 0.737219 CTGCCAAGATAGCCAGTTGC 59.263 55.000 0.00 0.00 41.71 4.17
5263 8085 4.088638 CGTATGTTGCGGATCTATCTTTCG 59.911 45.833 0.00 0.00 0.00 3.46
5388 8212 6.648310 CCTCATTATACATGTGTCCATCTGAC 59.352 42.308 9.11 0.00 44.72 3.51
5418 8250 1.607148 CAAGACGAACAAAAGGTCCCC 59.393 52.381 0.00 0.00 0.00 4.81
5423 8255 2.943033 ACCTGTCAAGACGAACAAAAGG 59.057 45.455 0.00 0.00 0.00 3.11
5425 8257 3.601435 TCACCTGTCAAGACGAACAAAA 58.399 40.909 0.00 0.00 0.00 2.44
5570 8402 7.093992 AGAGTACTTGCATTAAGAAGAGTCAC 58.906 38.462 0.00 0.00 39.76 3.67
5591 8455 6.213600 ACACACCCAGAGTTCAATAATAGAGT 59.786 38.462 0.00 0.00 0.00 3.24
5592 8456 6.644347 ACACACCCAGAGTTCAATAATAGAG 58.356 40.000 0.00 0.00 0.00 2.43
5593 8457 6.620877 ACACACCCAGAGTTCAATAATAGA 57.379 37.500 0.00 0.00 0.00 1.98
5594 8458 7.327975 TGTACACACCCAGAGTTCAATAATAG 58.672 38.462 0.00 0.00 0.00 1.73
5595 8459 7.247456 TGTACACACCCAGAGTTCAATAATA 57.753 36.000 0.00 0.00 0.00 0.98
5722 8589 4.270008 AGCAACCATCGCCTTATTACTTT 58.730 39.130 0.00 0.00 0.00 2.66
5791 8664 9.080915 GGTACAAAGAGAAAACGTACTATTAGG 57.919 37.037 0.00 0.00 34.29 2.69
6035 8928 1.938577 GCATGCAGAGGTCATACTGTG 59.061 52.381 14.21 0.00 36.62 3.66
6062 8955 9.453572 AGATAGCTCAAGTCACAATGATAAAAA 57.546 29.630 0.00 0.00 0.00 1.94
6063 8956 8.886719 CAGATAGCTCAAGTCACAATGATAAAA 58.113 33.333 0.00 0.00 0.00 1.52
6064 8957 8.260114 TCAGATAGCTCAAGTCACAATGATAAA 58.740 33.333 0.00 0.00 0.00 1.40
6093 8990 7.985752 CAGACATATACCATGCATGACTGATAT 59.014 37.037 28.31 18.66 41.71 1.63
6096 8993 5.305128 TCAGACATATACCATGCATGACTGA 59.695 40.000 28.31 18.21 43.84 3.41
6127 9187 4.702131 ACTCTTGACCAAAATATGAGCACC 59.298 41.667 0.00 0.00 0.00 5.01
6128 9188 5.886960 ACTCTTGACCAAAATATGAGCAC 57.113 39.130 0.00 0.00 0.00 4.40
6134 9194 5.801380 ACGGTGTACTCTTGACCAAAATAT 58.199 37.500 0.00 0.00 0.00 1.28
6149 9209 2.343101 TGCTGCTTGATAACGGTGTAC 58.657 47.619 0.00 0.00 0.00 2.90
6156 9216 5.574443 GGATTTTGTTCTGCTGCTTGATAAC 59.426 40.000 0.00 0.00 0.00 1.89
6158 9218 4.766373 TGGATTTTGTTCTGCTGCTTGATA 59.234 37.500 0.00 0.00 0.00 2.15
6161 9221 3.374220 TGGATTTTGTTCTGCTGCTTG 57.626 42.857 0.00 0.00 0.00 4.01
6163 9223 4.036027 CGATATGGATTTTGTTCTGCTGCT 59.964 41.667 0.00 0.00 0.00 4.24
6206 9266 4.932200 ACAAGTCAAACTAGCTGTCTATGC 59.068 41.667 0.00 0.00 0.00 3.14
6207 9267 5.349817 CCACAAGTCAAACTAGCTGTCTATG 59.650 44.000 0.00 0.00 0.00 2.23
6208 9268 5.482908 CCACAAGTCAAACTAGCTGTCTAT 58.517 41.667 0.00 0.00 0.00 1.98
6209 9269 4.262463 CCCACAAGTCAAACTAGCTGTCTA 60.262 45.833 0.00 0.00 0.00 2.59
6215 9331 2.427506 CTCCCCACAAGTCAAACTAGC 58.572 52.381 0.00 0.00 0.00 3.42
6232 9348 4.613929 CTCTGCCAAGTGAGCTCC 57.386 61.111 12.15 2.40 0.00 4.70
6240 9356 2.974489 CTTGCCGTGCTCTGCCAAG 61.974 63.158 0.00 1.13 0.00 3.61
6283 9399 2.483491 GAGCTTGACTCCTTCAGCTTTG 59.517 50.000 0.00 0.00 38.24 2.77
6346 9463 1.003262 CACAAAAAGGGATGCACGCG 61.003 55.000 3.53 3.53 36.53 6.01
6356 9473 4.681744 TCAGCTTTTAGCACACAAAAAGG 58.318 39.130 8.99 0.00 45.56 3.11
6357 9474 5.232838 CCTTCAGCTTTTAGCACACAAAAAG 59.767 40.000 1.09 3.74 45.56 2.27
6358 9475 5.105554 TCCTTCAGCTTTTAGCACACAAAAA 60.106 36.000 1.09 0.00 45.56 1.94
6359 9476 4.400884 TCCTTCAGCTTTTAGCACACAAAA 59.599 37.500 1.09 0.00 45.56 2.44
6375 9492 2.847327 TGGAAGCTTGACTCCTTCAG 57.153 50.000 2.10 0.00 39.30 3.02
6392 9509 0.888736 TGATGTGGCGGTTGACTTGG 60.889 55.000 0.00 0.00 0.00 3.61
6405 9522 2.947652 GGGTGGTGATCTCATTGATGTG 59.052 50.000 0.00 0.00 35.14 3.21
6406 9523 2.577563 TGGGTGGTGATCTCATTGATGT 59.422 45.455 0.00 0.00 35.14 3.06
6407 9524 3.286329 TGGGTGGTGATCTCATTGATG 57.714 47.619 0.00 0.00 35.14 3.07
6408 9525 5.855338 ATATGGGTGGTGATCTCATTGAT 57.145 39.130 0.00 0.00 38.27 2.57
6409 9526 5.456619 GGAATATGGGTGGTGATCTCATTGA 60.457 44.000 0.00 0.00 0.00 2.57
6410 9527 4.763793 GGAATATGGGTGGTGATCTCATTG 59.236 45.833 0.00 0.00 0.00 2.82
6411 9528 4.666907 AGGAATATGGGTGGTGATCTCATT 59.333 41.667 0.00 0.00 0.00 2.57
6412 9529 4.246143 AGGAATATGGGTGGTGATCTCAT 58.754 43.478 0.00 0.00 0.00 2.90
6413 9530 3.668821 AGGAATATGGGTGGTGATCTCA 58.331 45.455 0.00 0.00 0.00 3.27
6414 9531 4.713792 AAGGAATATGGGTGGTGATCTC 57.286 45.455 0.00 0.00 0.00 2.75
6415 9532 6.786843 ATTAAGGAATATGGGTGGTGATCT 57.213 37.500 0.00 0.00 0.00 2.75
6416 9533 6.434340 GGAATTAAGGAATATGGGTGGTGATC 59.566 42.308 0.00 0.00 0.00 2.92
6417 9534 6.314917 GGAATTAAGGAATATGGGTGGTGAT 58.685 40.000 0.00 0.00 0.00 3.06
6418 9535 5.399727 GGGAATTAAGGAATATGGGTGGTGA 60.400 44.000 0.00 0.00 0.00 4.02
6419 9536 4.832823 GGGAATTAAGGAATATGGGTGGTG 59.167 45.833 0.00 0.00 0.00 4.17
6420 9537 4.737092 AGGGAATTAAGGAATATGGGTGGT 59.263 41.667 0.00 0.00 0.00 4.16
6421 9538 5.079643 CAGGGAATTAAGGAATATGGGTGG 58.920 45.833 0.00 0.00 0.00 4.61
6422 9539 5.079643 CCAGGGAATTAAGGAATATGGGTG 58.920 45.833 0.00 0.00 0.00 4.61
6423 9540 4.988221 TCCAGGGAATTAAGGAATATGGGT 59.012 41.667 0.00 0.00 0.00 4.51
6424 9541 5.162991 TGTCCAGGGAATTAAGGAATATGGG 60.163 44.000 0.00 0.00 0.00 4.00
6425 9542 5.952387 TGTCCAGGGAATTAAGGAATATGG 58.048 41.667 0.00 0.00 0.00 2.74
6426 9543 6.006449 CCTGTCCAGGGAATTAAGGAATATG 58.994 44.000 5.37 0.00 44.87 1.78
6427 9544 6.206180 CCTGTCCAGGGAATTAAGGAATAT 57.794 41.667 5.37 0.00 44.87 1.28
6428 9545 5.646692 CCTGTCCAGGGAATTAAGGAATA 57.353 43.478 5.37 0.00 44.87 1.75
6429 9546 4.526438 CCTGTCCAGGGAATTAAGGAAT 57.474 45.455 5.37 0.00 44.87 3.01
6444 9561 2.952310 GTTGGATTCTTATGGCCTGTCC 59.048 50.000 3.32 1.59 0.00 4.02
6445 9562 3.629398 CAGTTGGATTCTTATGGCCTGTC 59.371 47.826 3.32 0.00 0.00 3.51
6446 9563 3.266772 TCAGTTGGATTCTTATGGCCTGT 59.733 43.478 3.32 0.00 0.00 4.00
6447 9564 3.629398 GTCAGTTGGATTCTTATGGCCTG 59.371 47.826 3.32 0.00 0.00 4.85
6448 9565 3.266772 TGTCAGTTGGATTCTTATGGCCT 59.733 43.478 3.32 0.00 0.00 5.19
6449 9566 3.620488 TGTCAGTTGGATTCTTATGGCC 58.380 45.455 0.00 0.00 0.00 5.36
6450 9567 7.516198 AATATGTCAGTTGGATTCTTATGGC 57.484 36.000 0.00 0.00 0.00 4.40
6480 9597 9.823098 GCAAAGAAGATTAGACAGCATAATATG 57.177 33.333 0.00 0.00 0.00 1.78
6481 9598 9.565090 TGCAAAGAAGATTAGACAGCATAATAT 57.435 29.630 0.00 0.00 0.00 1.28
6482 9599 8.830580 GTGCAAAGAAGATTAGACAGCATAATA 58.169 33.333 0.00 0.00 0.00 0.98
6483 9600 7.466455 CGTGCAAAGAAGATTAGACAGCATAAT 60.466 37.037 0.00 0.00 0.00 1.28
6484 9601 6.183360 CGTGCAAAGAAGATTAGACAGCATAA 60.183 38.462 0.00 0.00 0.00 1.90
6485 9602 5.291858 CGTGCAAAGAAGATTAGACAGCATA 59.708 40.000 0.00 0.00 0.00 3.14
6486 9603 4.093998 CGTGCAAAGAAGATTAGACAGCAT 59.906 41.667 0.00 0.00 0.00 3.79
6487 9604 3.433274 CGTGCAAAGAAGATTAGACAGCA 59.567 43.478 0.00 0.00 0.00 4.41
6488 9605 3.433615 ACGTGCAAAGAAGATTAGACAGC 59.566 43.478 0.00 0.00 0.00 4.40
6489 9606 6.706055 TTACGTGCAAAGAAGATTAGACAG 57.294 37.500 0.00 0.00 0.00 3.51
6490 9607 7.667043 AATTACGTGCAAAGAAGATTAGACA 57.333 32.000 0.00 0.00 0.00 3.41
6491 9608 9.690434 CTAAATTACGTGCAAAGAAGATTAGAC 57.310 33.333 0.00 0.00 0.00 2.59
6492 9609 9.647797 TCTAAATTACGTGCAAAGAAGATTAGA 57.352 29.630 0.00 0.09 0.00 2.10
6497 9614 9.959749 AAAATTCTAAATTACGTGCAAAGAAGA 57.040 25.926 0.00 0.00 0.00 2.87
6523 9640 8.895737 GGAGTACCATTTTAACGGAAATCAATA 58.104 33.333 0.00 0.00 35.97 1.90
6524 9641 7.614192 AGGAGTACCATTTTAACGGAAATCAAT 59.386 33.333 0.00 0.00 38.94 2.57
6525 9642 6.943718 AGGAGTACCATTTTAACGGAAATCAA 59.056 34.615 0.00 0.00 38.94 2.57
6526 9643 6.478129 AGGAGTACCATTTTAACGGAAATCA 58.522 36.000 0.00 0.00 38.94 2.57
6527 9644 6.037940 GGAGGAGTACCATTTTAACGGAAATC 59.962 42.308 0.00 0.00 38.94 2.17
6528 9645 5.884232 GGAGGAGTACCATTTTAACGGAAAT 59.116 40.000 0.00 0.00 38.94 2.17
6529 9646 5.247862 GGAGGAGTACCATTTTAACGGAAA 58.752 41.667 0.00 0.00 38.94 3.13
6530 9647 4.621274 CGGAGGAGTACCATTTTAACGGAA 60.621 45.833 0.00 0.00 38.94 4.30
6531 9648 3.119029 CGGAGGAGTACCATTTTAACGGA 60.119 47.826 0.00 0.00 38.94 4.69
6532 9649 3.192466 CGGAGGAGTACCATTTTAACGG 58.808 50.000 0.00 0.00 38.94 4.44
6533 9650 3.853475 ACGGAGGAGTACCATTTTAACG 58.147 45.455 0.00 0.00 38.94 3.18
6534 9651 5.791367 GAACGGAGGAGTACCATTTTAAC 57.209 43.478 0.00 0.00 38.94 2.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.