Multiple sequence alignment - TraesCS5D01G465000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G465000 chr5D 100.000 7222 0 0 1 7222 507880463 507887684 0.000000e+00 13337.0
1 TraesCS5D01G465000 chr5D 87.082 1347 79 38 967 2259 30066818 30065513 0.000000e+00 1435.0
2 TraesCS5D01G465000 chr5D 87.514 873 46 23 957 1810 419085289 419084461 0.000000e+00 950.0
3 TraesCS5D01G465000 chr5D 83.940 467 32 13 1 427 507873110 507873573 2.430000e-109 407.0
4 TraesCS5D01G465000 chr5D 96.809 94 3 0 1848 1941 419084459 419084366 2.700000e-34 158.0
5 TraesCS5D01G465000 chr5B 94.380 4840 171 36 1848 6671 639154113 639149359 0.000000e+00 7337.0
6 TraesCS5D01G465000 chr5B 84.996 1313 95 52 540 1810 639155367 639154115 0.000000e+00 1240.0
7 TraesCS5D01G465000 chr5B 85.031 481 44 13 6741 7214 639149361 639148902 1.420000e-126 464.0
8 TraesCS5D01G465000 chr5B 89.908 218 18 3 25 238 639155773 639155556 1.980000e-70 278.0
9 TraesCS5D01G465000 chr5B 85.185 54 7 1 6907 6960 472530891 472530839 4.000000e-03 54.7
10 TraesCS5D01G465000 chr5A 94.691 2072 59 16 2977 5040 635498777 635500805 0.000000e+00 3169.0
11 TraesCS5D01G465000 chr5A 91.359 1921 108 26 5100 6983 635501092 635502991 0.000000e+00 2575.0
12 TraesCS5D01G465000 chr5A 85.919 2159 162 71 775 2825 635496232 635498356 0.000000e+00 2172.0
13 TraesCS5D01G465000 chr5A 81.748 389 28 15 307 682 635495821 635496179 1.190000e-72 285.0
14 TraesCS5D01G465000 chr5A 97.887 142 3 0 2819 2960 635498549 635498690 5.600000e-61 246.0
15 TraesCS5D01G465000 chr5A 94.340 159 6 2 7018 7175 635502993 635503149 2.600000e-59 241.0
16 TraesCS5D01G465000 chr5A 86.404 228 20 2 2443 2670 693358862 693358646 9.360000e-59 239.0
17 TraesCS5D01G465000 chr3B 86.156 874 55 25 957 1810 767724900 767725727 0.000000e+00 883.0
18 TraesCS5D01G465000 chr3B 85.812 874 58 25 957 1810 767738007 767738834 0.000000e+00 867.0
19 TraesCS5D01G465000 chr6B 88.442 199 13 2 2465 2663 667901884 667902072 1.570000e-56 231.0
20 TraesCS5D01G465000 chr6B 87.500 200 15 2 2467 2666 558909195 558909006 9.430000e-54 222.0
21 TraesCS5D01G465000 chr1B 87.624 202 15 2 2465 2666 22645819 22645628 7.290000e-55 226.0
22 TraesCS5D01G465000 chr1A 85.366 164 14 2 2465 2628 479639699 479639852 2.090000e-35 161.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G465000 chr5D 507880463 507887684 7221 False 13337.00 13337 100.000000 1 7222 1 chr5D.!!$F2 7221
1 TraesCS5D01G465000 chr5D 30065513 30066818 1305 True 1435.00 1435 87.082000 967 2259 1 chr5D.!!$R1 1292
2 TraesCS5D01G465000 chr5D 419084366 419085289 923 True 554.00 950 92.161500 957 1941 2 chr5D.!!$R2 984
3 TraesCS5D01G465000 chr5B 639148902 639155773 6871 True 2329.75 7337 88.578750 25 7214 4 chr5B.!!$R2 7189
4 TraesCS5D01G465000 chr5A 635495821 635503149 7328 False 1448.00 3169 90.990667 307 7175 6 chr5A.!!$F1 6868
5 TraesCS5D01G465000 chr3B 767724900 767725727 827 False 883.00 883 86.156000 957 1810 1 chr3B.!!$F1 853
6 TraesCS5D01G465000 chr3B 767738007 767738834 827 False 867.00 867 85.812000 957 1810 1 chr3B.!!$F2 853

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
80 81 0.040067 GCAAAACCTCTGAAGCCACG 60.040 55.000 0.00 0.0 0.00 4.94 F
399 404 0.109781 CCAATTCCAAGCAACGACCG 60.110 55.000 0.00 0.0 0.00 4.79 F
445 456 0.179084 ATCTCCGTGGCGTACATTGG 60.179 55.000 0.00 0.0 0.00 3.16 F
631 679 0.475828 AGTTACTTCCAGTGGGCCCT 60.476 55.000 25.70 0.0 0.00 5.19 F
1357 1490 0.737219 CGGTCAGTACCCTTACTCCG 59.263 60.000 0.00 0.0 43.54 4.63 F
1399 1537 0.937231 ATTCGTTTTGCCGCGTTTGG 60.937 50.000 4.92 0.0 0.00 3.28 F
1401 1539 1.009900 CGTTTTGCCGCGTTTGGTA 60.010 52.632 4.92 0.0 0.00 3.25 F
1402 1540 1.263482 CGTTTTGCCGCGTTTGGTAC 61.263 55.000 4.92 0.0 0.00 3.34 F
1452 1590 1.800805 CGGTCAAGTTCATCACTGCT 58.199 50.000 0.00 0.0 35.12 4.24 F
1811 2001 2.550830 TTCCTGTTCCTCAGCTTCAC 57.449 50.000 0.00 0.0 42.38 3.18 F
3543 4054 1.405105 TGCAAAACTCTGGTGCTTGAC 59.595 47.619 0.00 0.0 39.09 3.18 F
4096 4611 0.179004 TTGGTGTTGGTAGGTGCCAG 60.179 55.000 0.00 0.0 40.01 4.85 F
6125 6891 0.746659 AAACCCTGCAAGTTCACTGC 59.253 50.000 2.48 0.0 0.00 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1432 1570 0.166814 GCAGTGATGAACTTGACCGC 59.833 55.000 0.00 0.0 36.83 5.68 R
1491 1648 1.402984 GGTGTCGTCCTCTGCACTTAG 60.403 57.143 0.00 0.0 32.90 2.18 R
1698 1888 2.360475 GCTCCACCTGAAGGCCAC 60.360 66.667 5.01 0.0 39.32 5.01 R
2331 2557 3.125316 TGGCAAAACGTGTCTAGTGTAC 58.875 45.455 0.00 0.0 30.97 2.90 R
2497 2725 6.560253 ACTTACTTGCACTTAATGGACAAG 57.440 37.500 0.00 0.0 42.63 3.16 R
3252 3758 8.843885 ATTGAACTAAACCTACCTGTAGAAAC 57.156 34.615 5.89 0.0 35.21 2.78 R
3487 3997 9.582431 CAATATGATTCATATGCAATTCCCTTC 57.418 33.333 17.74 0.0 37.17 3.46 R
3518 4029 4.935352 AGCACCAGAGTTTTGCATTAAA 57.065 36.364 0.00 0.0 38.81 1.52 R
3530 4041 6.801539 TTTAATTACTGTCAAGCACCAGAG 57.198 37.500 0.00 0.0 32.93 3.35 R
3773 4287 2.093341 GGCATGGATCAAAGCATTGGTT 60.093 45.455 1.24 0.0 37.15 3.67 R
5080 5605 0.179094 ACAACCGCGAGTCACTTTGA 60.179 50.000 8.23 0.0 0.00 2.69 R
6161 6927 0.788995 GAAGCGCGATCATGATCTGG 59.211 55.000 28.48 21.3 35.72 3.86 R
7032 7851 0.892063 ACGTTTTGGTTGCTGTTGGT 59.108 45.000 0.00 0.0 0.00 3.67 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.712122 TTTGTCCTGGTTCAAAGTTGTC 57.288 40.909 12.78 0.00 0.00 3.18
22 23 2.285083 TGTCCTGGTTCAAAGTTGTCG 58.715 47.619 0.00 0.00 0.00 4.35
23 24 2.093394 TGTCCTGGTTCAAAGTTGTCGA 60.093 45.455 0.00 0.00 0.00 4.20
60 61 3.057734 GTCCGAATCACACGTTTTCTCT 58.942 45.455 0.00 0.00 0.00 3.10
64 65 3.303066 CGAATCACACGTTTTCTCTGCAA 60.303 43.478 0.00 0.00 0.00 4.08
75 76 5.277047 GTTTTCTCTGCAAAACCTCTGAAG 58.723 41.667 1.04 0.00 39.43 3.02
80 81 0.040067 GCAAAACCTCTGAAGCCACG 60.040 55.000 0.00 0.00 0.00 4.94
81 82 1.308998 CAAAACCTCTGAAGCCACGT 58.691 50.000 0.00 0.00 0.00 4.49
87 88 2.154462 CCTCTGAAGCCACGTGAATTT 58.846 47.619 19.30 8.00 0.00 1.82
95 96 3.674997 AGCCACGTGAATTTACACAGAT 58.325 40.909 19.30 0.00 40.34 2.90
98 99 4.094887 GCCACGTGAATTTACACAGATGAT 59.905 41.667 19.30 0.00 40.34 2.45
99 100 5.391950 GCCACGTGAATTTACACAGATGATT 60.392 40.000 19.30 0.00 40.34 2.57
101 102 5.953777 CACGTGAATTTACACAGATGATTCG 59.046 40.000 10.90 0.00 40.34 3.34
103 104 5.266242 GTGAATTTACACAGATGATTCGGC 58.734 41.667 0.00 0.00 40.11 5.54
163 164 0.248990 AAACGTCACGCCGTACTCAA 60.249 50.000 0.00 0.00 40.85 3.02
189 193 4.551388 GAAGATTATCCTAGCACCGACTG 58.449 47.826 0.00 0.00 0.00 3.51
238 243 5.588958 AAGAAAAGATTATCCTGGCAAGC 57.411 39.130 0.00 0.00 0.00 4.01
239 244 4.864726 AGAAAAGATTATCCTGGCAAGCT 58.135 39.130 0.00 0.00 0.00 3.74
240 245 6.006275 AGAAAAGATTATCCTGGCAAGCTA 57.994 37.500 0.00 0.00 0.00 3.32
242 247 7.065504 AGAAAAGATTATCCTGGCAAGCTAAT 58.934 34.615 0.00 0.00 0.00 1.73
243 248 7.562821 AGAAAAGATTATCCTGGCAAGCTAATT 59.437 33.333 0.00 0.00 0.00 1.40
244 249 8.766994 AAAAGATTATCCTGGCAAGCTAATTA 57.233 30.769 0.00 0.00 0.00 1.40
245 250 8.766994 AAAGATTATCCTGGCAAGCTAATTAA 57.233 30.769 0.00 0.00 0.00 1.40
246 251 7.992754 AGATTATCCTGGCAAGCTAATTAAG 57.007 36.000 0.00 0.00 0.00 1.85
247 252 6.944862 AGATTATCCTGGCAAGCTAATTAAGG 59.055 38.462 0.00 0.00 0.00 2.69
249 254 1.334869 CCTGGCAAGCTAATTAAGGCG 59.665 52.381 0.00 0.00 0.00 5.52
250 255 2.288666 CTGGCAAGCTAATTAAGGCGA 58.711 47.619 0.00 0.00 0.00 5.54
251 256 2.682856 CTGGCAAGCTAATTAAGGCGAA 59.317 45.455 0.00 0.00 0.00 4.70
252 257 2.682856 TGGCAAGCTAATTAAGGCGAAG 59.317 45.455 0.00 0.00 0.00 3.79
273 278 7.189512 CGAAGCAAAGATTTTGTTATAGGAGG 58.810 38.462 3.77 0.00 0.00 4.30
275 280 7.631717 AGCAAAGATTTTGTTATAGGAGGTC 57.368 36.000 3.77 0.00 0.00 3.85
276 281 7.175104 AGCAAAGATTTTGTTATAGGAGGTCA 58.825 34.615 3.77 0.00 0.00 4.02
277 282 7.669722 AGCAAAGATTTTGTTATAGGAGGTCAA 59.330 33.333 3.77 0.00 0.00 3.18
278 283 8.303876 GCAAAGATTTTGTTATAGGAGGTCAAA 58.696 33.333 3.77 0.00 0.00 2.69
279 284 9.626045 CAAAGATTTTGTTATAGGAGGTCAAAC 57.374 33.333 0.00 0.00 0.00 2.93
282 287 6.548441 TTTTGTTATAGGAGGTCAAACACG 57.452 37.500 0.00 0.00 30.28 4.49
283 288 3.592059 TGTTATAGGAGGTCAAACACGC 58.408 45.455 0.00 0.00 0.00 5.34
285 290 0.892755 ATAGGAGGTCAAACACGCGA 59.107 50.000 15.93 0.00 0.00 5.87
288 293 1.155424 GGAGGTCAAACACGCGAACA 61.155 55.000 15.93 0.00 0.00 3.18
290 295 0.586319 AGGTCAAACACGCGAACATG 59.414 50.000 15.93 2.09 0.00 3.21
292 297 0.996727 GTCAAACACGCGAACATGGC 60.997 55.000 15.93 4.13 0.00 4.40
300 305 3.418913 CGAACATGGCGACCGCAA 61.419 61.111 16.47 5.19 44.11 4.85
301 306 2.480555 GAACATGGCGACCGCAAG 59.519 61.111 16.47 7.47 44.11 4.01
328 333 0.577269 GAATCAAGGCGAATCGACGG 59.423 55.000 6.91 1.13 41.28 4.79
354 359 4.203076 CCATCCGTCCGTCCGTCC 62.203 72.222 0.00 0.00 0.00 4.79
364 369 3.308705 GTCCGTCCCCTGGTCGTT 61.309 66.667 0.00 0.00 32.82 3.85
365 370 3.307906 TCCGTCCCCTGGTCGTTG 61.308 66.667 0.00 0.00 32.82 4.10
367 372 4.003788 CGTCCCCTGGTCGTTGCT 62.004 66.667 0.00 0.00 30.36 3.91
368 373 2.430367 GTCCCCTGGTCGTTGCTT 59.570 61.111 0.00 0.00 0.00 3.91
399 404 0.109781 CCAATTCCAAGCAACGACCG 60.110 55.000 0.00 0.00 0.00 4.79
441 452 1.942657 GTAGTATCTCCGTGGCGTACA 59.057 52.381 0.00 0.00 0.00 2.90
444 455 2.124903 GTATCTCCGTGGCGTACATTG 58.875 52.381 0.00 0.00 0.00 2.82
445 456 0.179084 ATCTCCGTGGCGTACATTGG 60.179 55.000 0.00 0.00 0.00 3.16
450 461 1.680105 CGTGGCGTACATTGGTCGAC 61.680 60.000 7.13 7.13 0.00 4.20
492 510 3.741476 GACCCGTCGGCGTACACT 61.741 66.667 9.28 0.00 36.15 3.55
522 540 1.373497 GGATACGATCAGCGGGCTG 60.373 63.158 14.36 14.36 46.49 4.85
553 600 2.167861 GCGATCGCTCCAAGTGGAC 61.168 63.158 31.94 0.00 39.78 4.02
564 612 1.144057 AAGTGGACGCATCCCGATC 59.856 57.895 0.00 0.00 45.59 3.69
565 613 2.629050 AAGTGGACGCATCCCGATCG 62.629 60.000 8.51 8.51 45.59 3.69
566 614 2.831284 TGGACGCATCCCGATCGA 60.831 61.111 18.66 0.00 45.59 3.59
567 615 2.049985 GGACGCATCCCGATCGAG 60.050 66.667 18.66 2.49 39.39 4.04
568 616 2.731348 GACGCATCCCGATCGAGC 60.731 66.667 18.66 13.54 41.02 5.03
588 636 2.737180 CCGATCCATCCAGGTCCG 59.263 66.667 0.00 0.00 39.02 4.79
604 652 3.833645 CGGCCAGCGCTACCAGTA 61.834 66.667 23.95 0.00 34.44 2.74
628 676 2.832733 AGTAGAGTTACTTCCAGTGGGC 59.167 50.000 9.92 0.00 36.75 5.36
631 679 0.475828 AGTTACTTCCAGTGGGCCCT 60.476 55.000 25.70 0.00 0.00 5.19
756 812 1.300931 GTGCGAGCAAGTCACCTCA 60.301 57.895 0.00 0.00 0.00 3.86
768 824 2.923035 ACCTCACCTCACCACCGG 60.923 66.667 0.00 0.00 0.00 5.28
816 887 2.234168 GAGGGATAAATAGAGGACCGGC 59.766 54.545 0.00 0.00 0.00 6.13
876 961 2.749044 CACTCAGCGCCTTGGCAT 60.749 61.111 2.29 0.00 34.64 4.40
889 974 3.845259 GGCATCACCGCGTCCCTA 61.845 66.667 4.92 0.00 0.00 3.53
895 980 3.130160 ACCGCGTCCCTACTCGTC 61.130 66.667 4.92 0.00 31.96 4.20
896 981 2.823147 CCGCGTCCCTACTCGTCT 60.823 66.667 4.92 0.00 31.96 4.18
951 1046 3.760035 GCGGTGAGCGAAGGAGGA 61.760 66.667 8.74 0.00 35.41 3.71
952 1047 2.492090 CGGTGAGCGAAGGAGGAG 59.508 66.667 0.00 0.00 0.00 3.69
953 1048 2.896443 GGTGAGCGAAGGAGGAGG 59.104 66.667 0.00 0.00 0.00 4.30
960 1055 1.000486 CGAAGGAGGAGGGAGTGGA 60.000 63.158 0.00 0.00 0.00 4.02
1083 1183 3.543536 GATCAGGCGCCAGATCCCC 62.544 68.421 38.29 22.53 34.29 4.81
1287 1414 1.467734 GCTGATGTTGCTCTGGTTCTG 59.532 52.381 0.00 0.00 0.00 3.02
1345 1472 2.520020 TGGACACCGTCGGTCAGT 60.520 61.111 15.67 10.85 37.00 3.41
1357 1490 0.737219 CGGTCAGTACCCTTACTCCG 59.263 60.000 0.00 0.00 43.54 4.63
1369 1507 2.507110 TTACTCCGGCTGCTCACTGC 62.507 60.000 0.00 0.00 43.25 4.40
1399 1537 0.937231 ATTCGTTTTGCCGCGTTTGG 60.937 50.000 4.92 0.00 0.00 3.28
1401 1539 1.009900 CGTTTTGCCGCGTTTGGTA 60.010 52.632 4.92 0.00 0.00 3.25
1402 1540 1.263482 CGTTTTGCCGCGTTTGGTAC 61.263 55.000 4.92 0.00 0.00 3.34
1420 1558 6.385649 TGGTACAAATTCTGAGTTGTTTCC 57.614 37.500 12.26 13.97 40.86 3.13
1421 1559 5.300792 TGGTACAAATTCTGAGTTGTTTCCC 59.699 40.000 12.26 10.78 40.86 3.97
1422 1560 4.937201 ACAAATTCTGAGTTGTTTCCCC 57.063 40.909 3.71 0.00 40.86 4.81
1423 1561 4.546674 ACAAATTCTGAGTTGTTTCCCCT 58.453 39.130 3.71 0.00 40.86 4.79
1424 1562 4.962362 ACAAATTCTGAGTTGTTTCCCCTT 59.038 37.500 3.71 0.00 40.86 3.95
1425 1563 5.425217 ACAAATTCTGAGTTGTTTCCCCTTT 59.575 36.000 3.71 0.00 40.86 3.11
1426 1564 6.070251 ACAAATTCTGAGTTGTTTCCCCTTTT 60.070 34.615 3.71 0.00 40.86 2.27
1427 1565 6.560003 AATTCTGAGTTGTTTCCCCTTTTT 57.440 33.333 0.00 0.00 0.00 1.94
1447 1585 1.960417 TGTTGCGGTCAAGTTCATCA 58.040 45.000 0.00 0.00 31.93 3.07
1452 1590 1.800805 CGGTCAAGTTCATCACTGCT 58.199 50.000 0.00 0.00 35.12 4.24
1462 1600 5.594926 AGTTCATCACTGCTTTCCTTTTTG 58.405 37.500 0.00 0.00 32.83 2.44
1475 1628 6.406065 GCTTTCCTTTTTGGTACCACTGTTTA 60.406 38.462 16.04 0.00 37.07 2.01
1483 1636 3.707611 TGGTACCACTGTTTACTCACTGT 59.292 43.478 11.60 0.00 0.00 3.55
1491 1648 6.366332 CCACTGTTTACTCACTGTGATTAGTC 59.634 42.308 11.45 7.59 45.01 2.59
1495 1652 9.347934 CTGTTTACTCACTGTGATTAGTCTAAG 57.652 37.037 11.45 0.00 0.00 2.18
1678 1868 5.824429 TCAATTGTGCTCTTCTTCTTGTTG 58.176 37.500 5.13 0.00 0.00 3.33
1698 1888 8.716646 TTGTTGATCTAACCATGTATGTACTG 57.283 34.615 0.00 0.00 38.55 2.74
1811 2001 2.550830 TTCCTGTTCCTCAGCTTCAC 57.449 50.000 0.00 0.00 42.38 3.18
1832 2022 3.373439 ACAGCGCTTCTCATCATTTTCTC 59.627 43.478 7.50 0.00 0.00 2.87
2030 2244 5.614308 AGTGAAATTGTCATGTCAGTCAGA 58.386 37.500 0.00 0.00 38.90 3.27
2087 2304 8.928270 AATGCTCATAGTTACACTTACAGTAC 57.072 34.615 0.00 0.00 0.00 2.73
2114 2339 7.931275 ACCAGACAAAGAAAGAGATTACAAAC 58.069 34.615 0.00 0.00 0.00 2.93
2141 2366 8.687292 ACTGAATAGTCGGATGTACTTGTATA 57.313 34.615 5.91 0.00 33.93 1.47
2211 2437 6.018343 GCTTATGCCAACTTTTGCTTGTTTTA 60.018 34.615 0.00 0.00 0.00 1.52
2245 2471 5.018539 TCTTCCAGGTGGTATAAATGACG 57.981 43.478 0.00 0.00 36.34 4.35
2246 2472 4.468510 TCTTCCAGGTGGTATAAATGACGT 59.531 41.667 0.00 0.00 36.34 4.34
2711 2939 6.716628 TCAAGTTCATCAGTGCTTTCCTTTAT 59.283 34.615 0.00 0.00 0.00 1.40
2726 2954 7.328493 GCTTTCCTTTATGTAATGTTTGGTCAC 59.672 37.037 0.00 0.00 0.00 3.67
2727 2955 8.472007 TTTCCTTTATGTAATGTTTGGTCACT 57.528 30.769 0.00 0.00 0.00 3.41
3011 3517 4.829064 TTTTCTTTGGGTGTTGAGATCG 57.171 40.909 0.00 0.00 0.00 3.69
3047 3553 6.524586 GTGATACATGTTTAACTTGCTTCTGC 59.475 38.462 2.30 0.00 40.20 4.26
3252 3758 7.966246 TCATCTTTCAAATTCAATGGGTTTG 57.034 32.000 5.37 5.37 36.61 2.93
3487 3997 4.220693 TGAGGTACATCAACCCATCAAG 57.779 45.455 7.95 0.00 40.71 3.02
3536 4047 9.777297 ATTGTAAATTTAATGCAAAACTCTGGT 57.223 25.926 0.00 0.00 0.00 4.00
3537 4048 8.586570 TGTAAATTTAATGCAAAACTCTGGTG 57.413 30.769 0.00 0.00 0.00 4.17
3538 4049 6.544038 AAATTTAATGCAAAACTCTGGTGC 57.456 33.333 0.00 0.00 38.78 5.01
3539 4050 4.935352 TTTAATGCAAAACTCTGGTGCT 57.065 36.364 0.00 0.00 39.09 4.40
3540 4051 4.935352 TTAATGCAAAACTCTGGTGCTT 57.065 36.364 0.00 0.00 39.09 3.91
3541 4052 2.806608 ATGCAAAACTCTGGTGCTTG 57.193 45.000 0.00 0.00 39.09 4.01
3542 4053 1.761449 TGCAAAACTCTGGTGCTTGA 58.239 45.000 0.00 0.00 39.09 3.02
3543 4054 1.405105 TGCAAAACTCTGGTGCTTGAC 59.595 47.619 0.00 0.00 39.09 3.18
3544 4055 1.405105 GCAAAACTCTGGTGCTTGACA 59.595 47.619 0.00 0.00 35.36 3.58
3545 4056 2.542411 GCAAAACTCTGGTGCTTGACAG 60.542 50.000 0.00 0.00 35.36 3.51
3773 4287 4.576053 GTGCAGTGCTTGAATGATATGGTA 59.424 41.667 17.60 0.00 0.00 3.25
4022 4537 7.011295 GCTCATAGCTCAGAATAGATTTATGGC 59.989 40.741 0.00 0.00 38.45 4.40
4096 4611 0.179004 TTGGTGTTGGTAGGTGCCAG 60.179 55.000 0.00 0.00 40.01 4.85
4114 4629 3.760684 GCCAGGGATTAAAGATAGGCATG 59.239 47.826 0.00 0.00 40.50 4.06
4115 4630 3.760684 CCAGGGATTAAAGATAGGCATGC 59.239 47.826 9.90 9.90 0.00 4.06
4116 4631 4.401022 CAGGGATTAAAGATAGGCATGCA 58.599 43.478 21.36 0.00 0.00 3.96
4117 4632 5.014858 CAGGGATTAAAGATAGGCATGCAT 58.985 41.667 21.36 16.31 0.00 3.96
4372 4895 8.970691 AAACACTAGCTATTTTGCAATGTTAG 57.029 30.769 0.00 3.33 35.24 2.34
4506 5029 2.704065 CCCTAGTTATACAGTGGTGGGG 59.296 54.545 0.00 0.00 0.00 4.96
4509 5032 2.627933 AGTTATACAGTGGTGGGGTGT 58.372 47.619 0.00 0.00 0.00 4.16
4584 5108 8.407064 TCGTGAAACAACTTTATTTACCACATT 58.593 29.630 0.00 0.00 35.74 2.71
4747 5272 5.186797 CCTGCAATTTACCAGAAAATACCCA 59.813 40.000 0.00 0.00 0.00 4.51
4767 5292 4.503910 CCATTCGATCACCTCTTTACACA 58.496 43.478 0.00 0.00 0.00 3.72
4829 5354 9.376075 ACTCTACTTCTTCATATCACATTTGTG 57.624 33.333 4.29 4.29 46.91 3.33
4830 5355 9.376075 CTCTACTTCTTCATATCACATTTGTGT 57.624 33.333 10.30 1.71 45.76 3.72
4919 5444 5.412640 TGGCATCAGAAAATACAATTGCTG 58.587 37.500 5.05 3.81 0.00 4.41
4942 5467 9.256477 GCTGCCTTTTAGTTTAATTTGTAGTTT 57.744 29.630 0.00 0.00 0.00 2.66
5051 5576 4.596585 GGTGTGGGTGGGTGGGTG 62.597 72.222 0.00 0.00 0.00 4.61
5072 5597 2.807676 GGGGGTGATCAACAAAGATGT 58.192 47.619 13.90 0.00 43.14 3.06
5073 5598 2.493278 GGGGGTGATCAACAAAGATGTG 59.507 50.000 13.90 0.00 40.46 3.21
5074 5599 3.420893 GGGGTGATCAACAAAGATGTGA 58.579 45.455 13.90 0.00 40.46 3.58
5075 5600 3.826157 GGGGTGATCAACAAAGATGTGAA 59.174 43.478 13.90 0.00 40.46 3.18
5076 5601 4.321230 GGGGTGATCAACAAAGATGTGAAC 60.321 45.833 13.90 0.00 40.46 3.18
5077 5602 4.321230 GGGTGATCAACAAAGATGTGAACC 60.321 45.833 13.90 0.00 40.46 3.62
5078 5603 4.520492 GGTGATCAACAAAGATGTGAACCT 59.480 41.667 5.69 0.00 40.46 3.50
5079 5604 5.010012 GGTGATCAACAAAGATGTGAACCTT 59.990 40.000 5.69 0.00 40.46 3.50
5080 5605 6.461509 GGTGATCAACAAAGATGTGAACCTTT 60.462 38.462 5.69 0.00 40.46 3.11
5120 5872 1.734465 GCGTTCTTCTTGGACAGATGG 59.266 52.381 0.00 0.00 0.00 3.51
5213 5973 2.098614 TGTTGTGCTCTTTCTGCCAAA 58.901 42.857 0.00 0.00 0.00 3.28
5252 6012 4.776795 AACCAACGGCTACCTTTATTTG 57.223 40.909 0.00 0.00 0.00 2.32
5255 6015 3.128068 CCAACGGCTACCTTTATTTGGTC 59.872 47.826 0.00 0.00 38.88 4.02
5299 6059 7.402811 TTCAGTCACGTGTAACTTTCTATTG 57.597 36.000 16.51 0.00 31.75 1.90
5340 6102 6.282568 ACCTAACATGTACTCCCTATCTCT 57.717 41.667 0.00 0.00 0.00 3.10
5341 6103 6.308566 ACCTAACATGTACTCCCTATCTCTC 58.691 44.000 0.00 0.00 0.00 3.20
5438 6200 3.438297 TTGCTAGAGTCGAAGGTATGC 57.562 47.619 0.00 0.00 0.00 3.14
5459 6221 3.432749 GCTCTGGAGTATGGATGCAAAGA 60.433 47.826 0.00 0.00 0.00 2.52
5742 6504 4.385825 TCTGATAGTTTTGCTCCAAACGT 58.614 39.130 0.00 0.00 32.79 3.99
5811 6573 3.624777 AGTGATGGCCTTTGATGGTTAG 58.375 45.455 3.32 0.00 0.00 2.34
5955 6717 3.207669 CATCCGGCCTGCTGAAGC 61.208 66.667 0.00 0.00 42.50 3.86
6121 6887 2.575532 CTGAGAAACCCTGCAAGTTCA 58.424 47.619 2.48 0.00 0.00 3.18
6125 6891 0.746659 AAACCCTGCAAGTTCACTGC 59.253 50.000 2.48 0.00 0.00 4.40
6139 6905 7.272084 GCAAGTTCACTGCTGTATAATTTTCTG 59.728 37.037 0.00 0.00 0.00 3.02
6145 6911 5.945784 ACTGCTGTATAATTTTCTGAAGCCA 59.054 36.000 0.00 0.00 0.00 4.75
6161 6927 3.567478 AGCCACTTTATCTGTCATCCC 57.433 47.619 0.00 0.00 0.00 3.85
6175 6941 1.277273 TCATCCCCAGATCATGATCGC 59.723 52.381 26.09 8.06 42.48 4.58
6182 6948 2.133553 CAGATCATGATCGCGCTTCTT 58.866 47.619 26.09 6.98 42.48 2.52
6183 6949 2.155347 CAGATCATGATCGCGCTTCTTC 59.845 50.000 26.09 3.98 42.48 2.87
6225 6991 3.774766 TGTACTGTATGGCAAGTGATCCT 59.225 43.478 0.00 0.00 0.00 3.24
6249 7015 4.806247 GTCAAGATGGTCCTCTTATGTTCG 59.194 45.833 4.00 0.00 33.73 3.95
6311 7077 3.589988 CTGTTTCCAGTAACAGCTCGAT 58.410 45.455 4.52 0.00 45.85 3.59
6334 7100 7.480229 CGATGATATTTCGTTTGCACTTAACAA 59.520 33.333 1.03 0.00 32.08 2.83
6455 7221 2.624364 CTGGTGCCATGCATGCTAATTA 59.376 45.455 21.69 0.00 41.91 1.40
6464 7231 6.293027 GCCATGCATGCTAATTATTTTGTTCC 60.293 38.462 21.69 0.00 0.00 3.62
6467 7234 9.531942 CATGCATGCTAATTATTTTGTTCCTTA 57.468 29.630 20.33 0.00 0.00 2.69
6479 7246 6.687081 TTTTGTTCCTTATTTGTGTCGTCT 57.313 33.333 0.00 0.00 0.00 4.18
6481 7248 4.951254 TGTTCCTTATTTGTGTCGTCTCA 58.049 39.130 0.00 0.00 0.00 3.27
6491 7258 5.839262 TTGTGTCGTCTCATATGTTGTTC 57.161 39.130 1.90 0.00 0.00 3.18
6544 7313 5.364157 AGACTTCCTTAGTGACATGTATCCC 59.636 44.000 0.00 0.00 37.17 3.85
6562 7331 1.212490 CATGAATTTGGCGTGGCGT 59.788 52.632 0.00 0.00 0.00 5.68
6605 7377 9.796062 GCTACATTTTGTTTATTTGTGAATGTG 57.204 29.630 8.57 2.05 37.00 3.21
6627 7399 2.751806 TGTGATGCATATCGTTTTGCCA 59.248 40.909 0.00 0.00 38.08 4.92
6644 7416 1.582968 CATGCCACCTGTGCAACTC 59.417 57.895 0.00 0.00 42.92 3.01
6651 7423 3.792401 CCACCTGTGCAACTCGATTATA 58.208 45.455 0.00 0.00 38.04 0.98
6682 7454 1.973812 GGCTTGTGGTTGGGCTCTC 60.974 63.158 0.00 0.00 0.00 3.20
6683 7455 1.073897 GCTTGTGGTTGGGCTCTCT 59.926 57.895 0.00 0.00 0.00 3.10
6710 7487 0.451783 CAATACAAGCAGCGGGGAAC 59.548 55.000 0.00 0.00 0.00 3.62
6711 7488 0.037590 AATACAAGCAGCGGGGAACA 59.962 50.000 0.00 0.00 0.00 3.18
6712 7489 0.676782 ATACAAGCAGCGGGGAACAC 60.677 55.000 0.00 0.00 0.00 3.32
6713 7490 2.741486 TACAAGCAGCGGGGAACACC 62.741 60.000 0.00 0.00 39.11 4.16
6714 7491 3.884774 AAGCAGCGGGGAACACCA 61.885 61.111 0.00 0.00 42.91 4.17
6715 7492 3.850098 AAGCAGCGGGGAACACCAG 62.850 63.158 0.00 0.00 42.91 4.00
6716 7493 4.643387 GCAGCGGGGAACACCAGT 62.643 66.667 0.00 0.00 42.91 4.00
6717 7494 3.065306 CAGCGGGGAACACCAGTA 58.935 61.111 0.00 0.00 42.91 2.74
6718 7495 1.079127 CAGCGGGGAACACCAGTAG 60.079 63.158 0.00 0.00 42.91 2.57
6719 7496 1.229082 AGCGGGGAACACCAGTAGA 60.229 57.895 0.00 0.00 42.91 2.59
6720 7497 0.834687 AGCGGGGAACACCAGTAGAA 60.835 55.000 0.00 0.00 42.91 2.10
6721 7498 0.252197 GCGGGGAACACCAGTAGAAT 59.748 55.000 0.00 0.00 42.91 2.40
6722 7499 2.012051 GCGGGGAACACCAGTAGAATG 61.012 57.143 0.00 0.00 42.91 2.67
6723 7500 1.278127 CGGGGAACACCAGTAGAATGT 59.722 52.381 0.00 0.00 42.91 2.71
6735 7512 5.178797 CCAGTAGAATGTCAGGAAAACGAT 58.821 41.667 0.00 0.00 0.00 3.73
6740 7517 8.478877 AGTAGAATGTCAGGAAAACGATCTTAT 58.521 33.333 0.00 0.00 0.00 1.73
6742 7519 7.106239 AGAATGTCAGGAAAACGATCTTATGT 58.894 34.615 0.00 0.00 0.00 2.29
6756 7533 7.612677 ACGATCTTATGTCAAACTCCTTACTT 58.387 34.615 0.00 0.00 0.00 2.24
6788 7569 7.383102 ACTTTGCATATAAGTTTGGTCTCAG 57.617 36.000 0.00 0.00 32.06 3.35
6799 7580 2.526304 TGGTCTCAGGTCAAACTTCG 57.474 50.000 0.00 0.00 0.00 3.79
6988 7782 8.296713 TGTACTTTATGAATTTTGACTCAAGGC 58.703 33.333 0.00 0.00 0.00 4.35
6990 7784 7.725251 ACTTTATGAATTTTGACTCAAGGCAA 58.275 30.769 0.00 0.00 0.00 4.52
6991 7785 8.203485 ACTTTATGAATTTTGACTCAAGGCAAA 58.797 29.630 6.94 6.94 32.63 3.68
6992 7786 9.211485 CTTTATGAATTTTGACTCAAGGCAAAT 57.789 29.630 11.65 0.00 34.36 2.32
6998 7792 9.428097 GAATTTTGACTCAAGGCAAATCTTAAT 57.572 29.630 11.65 0.00 34.36 1.40
7000 7794 6.899393 TTGACTCAAGGCAAATCTTAATGT 57.101 33.333 0.00 0.00 0.00 2.71
7001 7795 6.258230 TGACTCAAGGCAAATCTTAATGTG 57.742 37.500 0.00 0.00 0.00 3.21
7004 7798 5.416952 ACTCAAGGCAAATCTTAATGTGGAG 59.583 40.000 0.00 0.00 0.00 3.86
7005 7799 5.324409 TCAAGGCAAATCTTAATGTGGAGT 58.676 37.500 0.00 0.00 0.00 3.85
7007 7801 6.945435 TCAAGGCAAATCTTAATGTGGAGTAA 59.055 34.615 0.00 0.00 0.00 2.24
7035 7854 3.830744 CGGAGGGAATACATACAACCA 57.169 47.619 0.00 0.00 0.00 3.67
7036 7855 4.145365 CGGAGGGAATACATACAACCAA 57.855 45.455 0.00 0.00 0.00 3.67
7037 7856 3.875134 CGGAGGGAATACATACAACCAAC 59.125 47.826 0.00 0.00 0.00 3.77
7038 7857 4.624364 CGGAGGGAATACATACAACCAACA 60.624 45.833 0.00 0.00 0.00 3.33
7039 7858 4.881850 GGAGGGAATACATACAACCAACAG 59.118 45.833 0.00 0.00 0.00 3.16
7040 7859 4.270008 AGGGAATACATACAACCAACAGC 58.730 43.478 0.00 0.00 0.00 4.40
7041 7860 4.013728 GGGAATACATACAACCAACAGCA 58.986 43.478 0.00 0.00 0.00 4.41
7042 7861 4.461081 GGGAATACATACAACCAACAGCAA 59.539 41.667 0.00 0.00 0.00 3.91
7043 7862 5.399013 GGAATACATACAACCAACAGCAAC 58.601 41.667 0.00 0.00 0.00 4.17
7044 7863 5.385509 AATACATACAACCAACAGCAACC 57.614 39.130 0.00 0.00 0.00 3.77
7045 7864 2.660572 ACATACAACCAACAGCAACCA 58.339 42.857 0.00 0.00 0.00 3.67
7046 7865 3.027412 ACATACAACCAACAGCAACCAA 58.973 40.909 0.00 0.00 0.00 3.67
7047 7866 3.449018 ACATACAACCAACAGCAACCAAA 59.551 39.130 0.00 0.00 0.00 3.28
7048 7867 4.081420 ACATACAACCAACAGCAACCAAAA 60.081 37.500 0.00 0.00 0.00 2.44
7049 7868 2.694213 ACAACCAACAGCAACCAAAAC 58.306 42.857 0.00 0.00 0.00 2.43
7050 7869 1.658095 CAACCAACAGCAACCAAAACG 59.342 47.619 0.00 0.00 0.00 3.60
7051 7870 0.892063 ACCAACAGCAACCAAAACGT 59.108 45.000 0.00 0.00 0.00 3.99
7052 7871 2.093106 ACCAACAGCAACCAAAACGTA 58.907 42.857 0.00 0.00 0.00 3.57
7053 7872 2.098443 ACCAACAGCAACCAAAACGTAG 59.902 45.455 0.00 0.00 0.00 3.51
7054 7873 2.542824 CCAACAGCAACCAAAACGTAGG 60.543 50.000 0.00 0.00 0.00 3.18
7055 7874 2.047002 ACAGCAACCAAAACGTAGGT 57.953 45.000 1.76 1.76 40.61 3.08
7056 7875 3.196939 ACAGCAACCAAAACGTAGGTA 57.803 42.857 7.57 0.00 37.07 3.08
7057 7876 3.135994 ACAGCAACCAAAACGTAGGTAG 58.864 45.455 7.57 2.62 37.07 3.18
7058 7877 3.181463 ACAGCAACCAAAACGTAGGTAGA 60.181 43.478 7.57 0.00 37.07 2.59
7059 7878 3.810941 CAGCAACCAAAACGTAGGTAGAA 59.189 43.478 7.57 0.00 37.07 2.10
7060 7879 4.273969 CAGCAACCAAAACGTAGGTAGAAA 59.726 41.667 7.57 0.00 37.07 2.52
7061 7880 4.514066 AGCAACCAAAACGTAGGTAGAAAG 59.486 41.667 7.57 0.00 37.07 2.62
7062 7881 4.779987 CAACCAAAACGTAGGTAGAAAGC 58.220 43.478 7.57 0.00 37.07 3.51
7063 7882 4.075963 ACCAAAACGTAGGTAGAAAGCA 57.924 40.909 5.55 0.00 36.07 3.91
7064 7883 3.811497 ACCAAAACGTAGGTAGAAAGCAC 59.189 43.478 5.55 0.00 36.07 4.40
7065 7884 3.810941 CCAAAACGTAGGTAGAAAGCACA 59.189 43.478 0.00 0.00 0.00 4.57
7156 7976 2.614057 CAGTGGCGATTACAAGGGAATC 59.386 50.000 0.00 0.00 0.00 2.52
7177 7997 4.498241 TCACAGAATGGATCGAAGAACAG 58.502 43.478 0.00 0.00 40.78 3.16
7188 8008 4.468502 ATCGAAGAACAGGCAACTTAGCG 61.469 47.826 0.00 0.00 45.54 4.26
7202 8022 0.548197 TTAGCGGGGGAAGGAGGAAA 60.548 55.000 0.00 0.00 0.00 3.13
7214 8034 4.884744 GGAAGGAGGAAAATAGGAGAAAGC 59.115 45.833 0.00 0.00 0.00 3.51
7215 8035 4.511786 AGGAGGAAAATAGGAGAAAGCC 57.488 45.455 0.00 0.00 0.00 4.35
7216 8036 3.852578 AGGAGGAAAATAGGAGAAAGCCA 59.147 43.478 0.00 0.00 0.00 4.75
7217 8037 4.080072 AGGAGGAAAATAGGAGAAAGCCAG 60.080 45.833 0.00 0.00 0.00 4.85
7218 8038 4.324641 GGAGGAAAATAGGAGAAAGCCAGT 60.325 45.833 0.00 0.00 0.00 4.00
7219 8039 5.104485 GGAGGAAAATAGGAGAAAGCCAGTA 60.104 44.000 0.00 0.00 0.00 2.74
7220 8040 6.388619 AGGAAAATAGGAGAAAGCCAGTAA 57.611 37.500 0.00 0.00 0.00 2.24
7221 8041 6.790319 AGGAAAATAGGAGAAAGCCAGTAAA 58.210 36.000 0.00 0.00 0.00 2.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.127895 CGACAACTTTGAACCAGGACAAA 59.872 43.478 13.09 13.09 35.26 2.83
1 2 2.680841 CGACAACTTTGAACCAGGACAA 59.319 45.455 0.00 0.00 0.00 3.18
2 3 2.093394 TCGACAACTTTGAACCAGGACA 60.093 45.455 0.00 0.00 0.00 4.02
3 4 2.557317 TCGACAACTTTGAACCAGGAC 58.443 47.619 0.00 0.00 0.00 3.85
4 5 2.992124 TCGACAACTTTGAACCAGGA 57.008 45.000 0.00 0.00 0.00 3.86
5 6 4.036262 TGATTTCGACAACTTTGAACCAGG 59.964 41.667 0.00 0.00 0.00 4.45
6 7 4.970003 GTGATTTCGACAACTTTGAACCAG 59.030 41.667 0.00 0.00 0.00 4.00
7 8 4.638421 AGTGATTTCGACAACTTTGAACCA 59.362 37.500 0.00 0.00 0.00 3.67
8 9 5.169836 AGTGATTTCGACAACTTTGAACC 57.830 39.130 0.00 0.00 0.00 3.62
9 10 6.020678 CCAAAGTGATTTCGACAACTTTGAAC 60.021 38.462 26.84 2.11 43.68 3.18
10 11 6.033341 CCAAAGTGATTTCGACAACTTTGAA 58.967 36.000 26.84 4.26 43.68 2.69
11 12 5.577835 CCAAAGTGATTTCGACAACTTTGA 58.422 37.500 26.84 0.00 43.68 2.69
12 13 4.207019 GCCAAAGTGATTTCGACAACTTTG 59.793 41.667 22.38 22.38 41.86 2.77
13 14 4.359706 GCCAAAGTGATTTCGACAACTTT 58.640 39.130 7.69 7.69 0.00 2.66
14 15 3.243401 GGCCAAAGTGATTTCGACAACTT 60.243 43.478 0.00 0.00 0.00 2.66
15 16 2.293399 GGCCAAAGTGATTTCGACAACT 59.707 45.455 0.00 0.00 0.00 3.16
16 17 2.607038 GGGCCAAAGTGATTTCGACAAC 60.607 50.000 4.39 0.00 0.00 3.32
17 18 1.611491 GGGCCAAAGTGATTTCGACAA 59.389 47.619 4.39 0.00 0.00 3.18
18 19 1.202879 AGGGCCAAAGTGATTTCGACA 60.203 47.619 6.18 0.00 0.00 4.35
19 20 1.200020 CAGGGCCAAAGTGATTTCGAC 59.800 52.381 6.18 0.00 0.00 4.20
20 21 1.202879 ACAGGGCCAAAGTGATTTCGA 60.203 47.619 6.18 0.00 0.00 3.71
21 22 1.200020 GACAGGGCCAAAGTGATTTCG 59.800 52.381 6.18 0.00 0.00 3.46
22 23 1.546029 GGACAGGGCCAAAGTGATTTC 59.454 52.381 6.18 0.00 0.00 2.17
23 24 1.632589 GGACAGGGCCAAAGTGATTT 58.367 50.000 6.18 0.00 0.00 2.17
60 61 1.032014 GTGGCTTCAGAGGTTTTGCA 58.968 50.000 0.00 0.00 0.00 4.08
64 65 0.468226 TCACGTGGCTTCAGAGGTTT 59.532 50.000 17.00 0.00 0.00 3.27
75 76 3.435327 TCATCTGTGTAAATTCACGTGGC 59.565 43.478 17.00 0.35 40.74 5.01
80 81 5.065218 AGCCGAATCATCTGTGTAAATTCAC 59.935 40.000 0.00 0.00 38.63 3.18
81 82 5.185454 AGCCGAATCATCTGTGTAAATTCA 58.815 37.500 0.00 0.00 0.00 2.57
87 88 2.419990 CCCAAGCCGAATCATCTGTGTA 60.420 50.000 0.00 0.00 0.00 2.90
95 96 1.202879 AGAAACACCCAAGCCGAATCA 60.203 47.619 0.00 0.00 0.00 2.57
98 99 0.472471 AGAGAAACACCCAAGCCGAA 59.528 50.000 0.00 0.00 0.00 4.30
99 100 0.472471 AAGAGAAACACCCAAGCCGA 59.528 50.000 0.00 0.00 0.00 5.54
101 102 0.961753 CCAAGAGAAACACCCAAGCC 59.038 55.000 0.00 0.00 0.00 4.35
103 104 2.230660 GACCCAAGAGAAACACCCAAG 58.769 52.381 0.00 0.00 0.00 3.61
143 144 0.661187 TGAGTACGGCGTGACGTTTC 60.661 55.000 24.86 10.96 46.25 2.78
148 149 2.434134 CGCTTGAGTACGGCGTGAC 61.434 63.158 24.86 16.17 43.28 3.67
149 150 2.126618 CGCTTGAGTACGGCGTGA 60.127 61.111 24.86 3.76 43.28 4.35
163 164 2.300437 GGTGCTAGGATAATCTTCCGCT 59.700 50.000 0.00 0.00 40.94 5.52
215 220 6.426587 AGCTTGCCAGGATAATCTTTTCTTA 58.573 36.000 0.00 0.00 0.00 2.10
218 223 6.699575 TTAGCTTGCCAGGATAATCTTTTC 57.300 37.500 0.00 0.00 0.00 2.29
220 225 8.766994 TTAATTAGCTTGCCAGGATAATCTTT 57.233 30.769 0.00 0.00 0.00 2.52
238 243 7.542130 ACAAAATCTTTGCTTCGCCTTAATTAG 59.458 33.333 0.00 0.00 0.00 1.73
239 244 7.375053 ACAAAATCTTTGCTTCGCCTTAATTA 58.625 30.769 0.00 0.00 0.00 1.40
240 245 6.223120 ACAAAATCTTTGCTTCGCCTTAATT 58.777 32.000 0.00 0.00 0.00 1.40
242 247 5.195001 ACAAAATCTTTGCTTCGCCTTAA 57.805 34.783 0.00 0.00 0.00 1.85
243 248 4.846779 ACAAAATCTTTGCTTCGCCTTA 57.153 36.364 0.00 0.00 0.00 2.69
244 249 3.733443 ACAAAATCTTTGCTTCGCCTT 57.267 38.095 0.00 0.00 0.00 4.35
245 250 3.733443 AACAAAATCTTTGCTTCGCCT 57.267 38.095 0.00 0.00 0.00 5.52
246 251 5.743872 CCTATAACAAAATCTTTGCTTCGCC 59.256 40.000 0.00 0.00 0.00 5.54
247 252 6.551736 TCCTATAACAAAATCTTTGCTTCGC 58.448 36.000 0.00 0.00 0.00 4.70
249 254 8.056407 ACCTCCTATAACAAAATCTTTGCTTC 57.944 34.615 0.00 0.00 0.00 3.86
250 255 7.669722 TGACCTCCTATAACAAAATCTTTGCTT 59.330 33.333 0.00 0.00 0.00 3.91
251 256 7.175104 TGACCTCCTATAACAAAATCTTTGCT 58.825 34.615 0.00 0.00 0.00 3.91
252 257 7.391148 TGACCTCCTATAACAAAATCTTTGC 57.609 36.000 0.00 0.00 0.00 3.68
255 260 8.793592 GTGTTTGACCTCCTATAACAAAATCTT 58.206 33.333 0.00 0.00 33.40 2.40
256 261 7.119262 CGTGTTTGACCTCCTATAACAAAATCT 59.881 37.037 0.00 0.00 33.40 2.40
257 262 7.241376 CGTGTTTGACCTCCTATAACAAAATC 58.759 38.462 0.00 0.00 33.40 2.17
258 263 6.349033 GCGTGTTTGACCTCCTATAACAAAAT 60.349 38.462 0.00 0.00 33.40 1.82
260 265 4.453136 GCGTGTTTGACCTCCTATAACAAA 59.547 41.667 0.00 0.00 31.29 2.83
262 267 3.592059 GCGTGTTTGACCTCCTATAACA 58.408 45.455 0.00 0.00 0.00 2.41
263 268 2.601763 CGCGTGTTTGACCTCCTATAAC 59.398 50.000 0.00 0.00 0.00 1.89
265 270 2.093890 TCGCGTGTTTGACCTCCTATA 58.906 47.619 5.77 0.00 0.00 1.31
266 271 0.892755 TCGCGTGTTTGACCTCCTAT 59.107 50.000 5.77 0.00 0.00 2.57
267 272 0.675083 TTCGCGTGTTTGACCTCCTA 59.325 50.000 5.77 0.00 0.00 2.94
268 273 0.878961 GTTCGCGTGTTTGACCTCCT 60.879 55.000 5.77 0.00 0.00 3.69
270 275 0.865769 ATGTTCGCGTGTTTGACCTC 59.134 50.000 5.77 0.00 0.00 3.85
271 276 0.586319 CATGTTCGCGTGTTTGACCT 59.414 50.000 5.77 0.00 0.00 3.85
272 277 0.385473 CCATGTTCGCGTGTTTGACC 60.385 55.000 5.77 0.00 32.36 4.02
273 278 0.996727 GCCATGTTCGCGTGTTTGAC 60.997 55.000 5.77 0.00 32.36 3.18
275 280 2.074353 CGCCATGTTCGCGTGTTTG 61.074 57.895 5.77 0.19 44.55 2.93
276 281 2.251075 CGCCATGTTCGCGTGTTT 59.749 55.556 5.77 0.00 44.55 2.83
283 288 3.367051 CTTGCGGTCGCCATGTTCG 62.367 63.158 12.94 0.00 41.09 3.95
285 290 3.055719 CCTTGCGGTCGCCATGTT 61.056 61.111 12.94 0.00 41.09 2.71
292 297 4.778143 CCTTCCCCCTTGCGGTCG 62.778 72.222 0.00 0.00 0.00 4.79
293 298 2.211468 ATTCCTTCCCCCTTGCGGTC 62.211 60.000 0.00 0.00 0.00 4.79
294 299 2.211468 GATTCCTTCCCCCTTGCGGT 62.211 60.000 0.00 0.00 0.00 5.68
295 300 1.453928 GATTCCTTCCCCCTTGCGG 60.454 63.158 0.00 0.00 0.00 5.69
296 301 0.323360 TTGATTCCTTCCCCCTTGCG 60.323 55.000 0.00 0.00 0.00 4.85
297 302 1.478631 CTTGATTCCTTCCCCCTTGC 58.521 55.000 0.00 0.00 0.00 4.01
298 303 1.961919 GCCTTGATTCCTTCCCCCTTG 60.962 57.143 0.00 0.00 0.00 3.61
299 304 0.336392 GCCTTGATTCCTTCCCCCTT 59.664 55.000 0.00 0.00 0.00 3.95
300 305 1.926426 CGCCTTGATTCCTTCCCCCT 61.926 60.000 0.00 0.00 0.00 4.79
301 306 1.453928 CGCCTTGATTCCTTCCCCC 60.454 63.158 0.00 0.00 0.00 5.40
302 307 0.034477 TTCGCCTTGATTCCTTCCCC 60.034 55.000 0.00 0.00 0.00 4.81
303 308 1.950216 GATTCGCCTTGATTCCTTCCC 59.050 52.381 0.00 0.00 0.00 3.97
304 309 1.599542 CGATTCGCCTTGATTCCTTCC 59.400 52.381 0.00 0.00 0.00 3.46
308 313 0.577269 CGTCGATTCGCCTTGATTCC 59.423 55.000 0.00 0.00 0.00 3.01
328 333 3.272334 GACGGATGGATGCACGGC 61.272 66.667 2.49 0.00 0.00 5.68
354 359 1.376037 GAGGAAGCAACGACCAGGG 60.376 63.158 0.00 0.00 0.00 4.45
356 361 0.671781 CTGGAGGAAGCAACGACCAG 60.672 60.000 0.00 0.00 38.77 4.00
357 362 1.371183 CTGGAGGAAGCAACGACCA 59.629 57.895 0.00 0.00 0.00 4.02
363 368 2.347490 GACGGCTGGAGGAAGCAA 59.653 61.111 0.00 0.00 45.43 3.91
364 369 3.706373 GGACGGCTGGAGGAAGCA 61.706 66.667 0.00 0.00 45.43 3.91
365 370 2.543067 ATTGGACGGCTGGAGGAAGC 62.543 60.000 0.00 0.00 42.75 3.86
366 371 0.035056 AATTGGACGGCTGGAGGAAG 60.035 55.000 0.00 0.00 0.00 3.46
367 372 0.035439 GAATTGGACGGCTGGAGGAA 60.035 55.000 0.00 0.00 0.00 3.36
368 373 1.602237 GAATTGGACGGCTGGAGGA 59.398 57.895 0.00 0.00 0.00 3.71
399 404 2.041153 CCAACCTGCCAACCAGTTC 58.959 57.895 0.00 0.00 40.06 3.01
406 411 1.074775 CTACCTGCCAACCTGCCAA 59.925 57.895 0.00 0.00 0.00 4.52
409 414 1.486726 AGATACTACCTGCCAACCTGC 59.513 52.381 0.00 0.00 0.00 4.85
410 415 2.103263 GGAGATACTACCTGCCAACCTG 59.897 54.545 0.00 0.00 0.00 4.00
422 427 2.330440 TGTACGCCACGGAGATACTA 57.670 50.000 0.00 0.00 0.00 1.82
467 478 2.338015 GCCGACGGGTCTGTCTACA 61.338 63.158 17.22 0.00 36.71 2.74
469 480 2.520465 TACGCCGACGGGTCTGTCTA 62.520 60.000 17.22 0.00 46.04 2.59
492 510 2.767445 CGTATCCGGTCAGCGTCCA 61.767 63.158 0.00 0.00 0.00 4.02
522 540 4.487412 ATCGCGTCGGGTTCGTCC 62.487 66.667 5.77 0.00 37.69 4.79
553 600 2.429907 GAGCTCGATCGGGATGCG 60.430 66.667 21.68 0.27 0.00 4.73
564 612 2.152297 CTGGATGGATCGGGAGCTCG 62.152 65.000 7.83 0.00 0.00 5.03
565 613 1.670590 CTGGATGGATCGGGAGCTC 59.329 63.158 4.71 4.71 0.00 4.09
566 614 1.840650 CCTGGATGGATCGGGAGCT 60.841 63.158 0.00 0.00 38.35 4.09
567 615 2.105806 GACCTGGATGGATCGGGAGC 62.106 65.000 0.00 0.00 39.71 4.70
568 616 1.476007 GGACCTGGATGGATCGGGAG 61.476 65.000 0.00 0.00 39.71 4.30
588 636 1.389609 TACTACTGGTAGCGCTGGCC 61.390 60.000 22.90 21.95 41.24 5.36
618 666 2.449518 TGACAGGGCCCACTGGAA 60.450 61.111 27.56 4.06 42.75 3.53
733 789 4.077188 GACTTGCTCGCACACGGC 62.077 66.667 0.00 0.00 40.63 5.68
756 812 4.608774 TCCGTCCGGTGGTGAGGT 62.609 66.667 13.89 0.00 36.47 3.85
876 961 3.129502 CGAGTAGGGACGCGGTGA 61.130 66.667 12.47 0.00 44.13 4.02
889 974 2.675772 GGGTGGGACGAGACGAGT 60.676 66.667 0.00 0.00 0.00 4.18
917 1012 3.461773 CAGCCGGACGGATCCTGT 61.462 66.667 15.99 9.57 43.73 4.00
936 1031 2.726351 CCCTCCTCCTTCGCTCACC 61.726 68.421 0.00 0.00 0.00 4.02
938 1033 1.380515 CTCCCTCCTCCTTCGCTCA 60.381 63.158 0.00 0.00 0.00 4.26
939 1034 1.380650 ACTCCCTCCTCCTTCGCTC 60.381 63.158 0.00 0.00 0.00 5.03
940 1035 1.684049 CACTCCCTCCTCCTTCGCT 60.684 63.158 0.00 0.00 0.00 4.93
941 1036 2.726351 CCACTCCCTCCTCCTTCGC 61.726 68.421 0.00 0.00 0.00 4.70
942 1037 1.000486 TCCACTCCCTCCTCCTTCG 60.000 63.158 0.00 0.00 0.00 3.79
944 1039 1.022903 ATCTCCACTCCCTCCTCCTT 58.977 55.000 0.00 0.00 0.00 3.36
945 1040 1.022903 AATCTCCACTCCCTCCTCCT 58.977 55.000 0.00 0.00 0.00 3.69
947 1042 2.472029 TCAAATCTCCACTCCCTCCTC 58.528 52.381 0.00 0.00 0.00 3.71
948 1043 2.649742 TCAAATCTCCACTCCCTCCT 57.350 50.000 0.00 0.00 0.00 3.69
951 1046 4.934797 TCAAATCAAATCTCCACTCCCT 57.065 40.909 0.00 0.00 0.00 4.20
952 1047 6.071165 ACAAATCAAATCAAATCTCCACTCCC 60.071 38.462 0.00 0.00 0.00 4.30
953 1048 6.810182 CACAAATCAAATCAAATCTCCACTCC 59.190 38.462 0.00 0.00 0.00 3.85
960 1055 7.063780 GCCGAAATCACAAATCAAATCAAATCT 59.936 33.333 0.00 0.00 0.00 2.40
1193 1293 3.930134 AAGGGGAAGGGGGAAGGGG 62.930 68.421 0.00 0.00 0.00 4.79
1195 1295 2.317378 GGAAGGGGAAGGGGGAAGG 61.317 68.421 0.00 0.00 0.00 3.46
1196 1296 2.317378 GGGAAGGGGAAGGGGGAAG 61.317 68.421 0.00 0.00 0.00 3.46
1345 1472 1.001248 AGCAGCCGGAGTAAGGGTA 59.999 57.895 5.05 0.00 37.77 3.69
1357 1490 2.063541 AACAAACGCAGTGAGCAGCC 62.064 55.000 0.00 0.00 45.00 4.85
1369 1507 4.259889 GGCAAAACGAATTCAAACAAACG 58.740 39.130 6.22 0.00 0.00 3.60
1399 1537 5.535030 AGGGGAAACAACTCAGAATTTGTAC 59.465 40.000 0.00 0.00 34.82 2.90
1401 1539 4.546674 AGGGGAAACAACTCAGAATTTGT 58.453 39.130 0.00 0.00 37.55 2.83
1402 1540 5.535753 AAGGGGAAACAACTCAGAATTTG 57.464 39.130 0.00 0.00 0.00 2.32
1424 1562 3.577649 TGAACTTGACCGCAACAAAAA 57.422 38.095 0.00 0.00 0.00 1.94
1425 1563 3.129462 TGATGAACTTGACCGCAACAAAA 59.871 39.130 0.00 0.00 0.00 2.44
1426 1564 2.685388 TGATGAACTTGACCGCAACAAA 59.315 40.909 0.00 0.00 0.00 2.83
1427 1565 2.032799 GTGATGAACTTGACCGCAACAA 59.967 45.455 0.00 0.00 0.00 2.83
1428 1566 1.601903 GTGATGAACTTGACCGCAACA 59.398 47.619 0.00 0.00 0.00 3.33
1429 1567 1.873591 AGTGATGAACTTGACCGCAAC 59.126 47.619 0.00 0.00 34.57 4.17
1430 1568 1.872952 CAGTGATGAACTTGACCGCAA 59.127 47.619 0.00 0.00 36.83 4.85
1431 1569 1.511850 CAGTGATGAACTTGACCGCA 58.488 50.000 0.00 0.00 36.83 5.69
1432 1570 0.166814 GCAGTGATGAACTTGACCGC 59.833 55.000 0.00 0.00 36.83 5.68
1433 1571 1.800805 AGCAGTGATGAACTTGACCG 58.199 50.000 0.00 0.00 36.83 4.79
1447 1585 3.383505 GTGGTACCAAAAAGGAAAGCAGT 59.616 43.478 18.31 0.00 41.22 4.40
1452 1590 6.664384 AGTAAACAGTGGTACCAAAAAGGAAA 59.336 34.615 18.31 0.00 41.22 3.13
1462 1600 4.056050 CACAGTGAGTAAACAGTGGTACC 58.944 47.826 4.43 4.43 43.14 3.34
1475 1628 5.243954 TGCACTTAGACTAATCACAGTGAGT 59.756 40.000 9.64 9.23 38.54 3.41
1483 1636 4.096532 CGTCCTCTGCACTTAGACTAATCA 59.903 45.833 0.00 0.00 0.00 2.57
1491 1648 1.402984 GGTGTCGTCCTCTGCACTTAG 60.403 57.143 0.00 0.00 32.90 2.18
1495 1652 2.430921 CGGTGTCGTCCTCTGCAC 60.431 66.667 0.00 0.00 0.00 4.57
1678 1868 5.696724 GCCACAGTACATACATGGTTAGATC 59.303 44.000 11.79 0.00 37.17 2.75
1698 1888 2.360475 GCTCCACCTGAAGGCCAC 60.360 66.667 5.01 0.00 39.32 5.01
1811 2001 3.622163 AGAGAAAATGATGAGAAGCGCTG 59.378 43.478 12.58 0.00 0.00 5.18
2087 2304 7.496529 TGTAATCTCTTTCTTTGTCTGGTTG 57.503 36.000 0.00 0.00 0.00 3.77
2114 2339 6.100004 ACAAGTACATCCGACTATTCAGTTG 58.900 40.000 0.00 0.00 34.21 3.16
2178 2403 3.550437 AGTTGGCATAAGCTCTAGTGG 57.450 47.619 0.00 0.00 41.70 4.00
2211 2437 5.222130 ACCACCTGGAAGAAATACTCAACAT 60.222 40.000 0.00 0.00 38.94 2.71
2245 2471 7.715249 TGCAGATAATAAAACATGAGAGGGTAC 59.285 37.037 0.00 0.00 0.00 3.34
2246 2472 7.801104 TGCAGATAATAAAACATGAGAGGGTA 58.199 34.615 0.00 0.00 0.00 3.69
2294 2520 7.599621 TCTCAAAATACATGGCTTCACAAATTG 59.400 33.333 0.00 0.00 0.00 2.32
2331 2557 3.125316 TGGCAAAACGTGTCTAGTGTAC 58.875 45.455 0.00 0.00 30.97 2.90
2497 2725 6.560253 ACTTACTTGCACTTAATGGACAAG 57.440 37.500 0.00 0.00 42.63 3.16
2711 2939 8.862325 ATTTGATAGAGTGACCAAACATTACA 57.138 30.769 0.00 0.00 32.26 2.41
3252 3758 8.843885 ATTGAACTAAACCTACCTGTAGAAAC 57.156 34.615 5.89 0.00 35.21 2.78
3487 3997 9.582431 CAATATGATTCATATGCAATTCCCTTC 57.418 33.333 17.74 0.00 37.17 3.46
3518 4029 4.935352 AGCACCAGAGTTTTGCATTAAA 57.065 36.364 0.00 0.00 38.81 1.52
3530 4041 6.801539 TTTAATTACTGTCAAGCACCAGAG 57.198 37.500 0.00 0.00 32.93 3.35
3531 4042 7.759489 ATTTTAATTACTGTCAAGCACCAGA 57.241 32.000 0.00 0.00 32.93 3.86
3773 4287 2.093341 GGCATGGATCAAAGCATTGGTT 60.093 45.455 1.24 0.00 37.15 3.67
3988 4503 3.515630 TCTGAGCTATGAGCAAGTTTCG 58.484 45.455 0.64 0.00 45.56 3.46
4022 4537 8.837788 TCAATTATCATAAGTCATGGCTAGTG 57.162 34.615 0.00 2.61 35.16 2.74
4061 4576 4.199310 ACACCAATTACATCCAGGAATCG 58.801 43.478 0.00 0.00 0.00 3.34
4063 4578 4.711355 CCAACACCAATTACATCCAGGAAT 59.289 41.667 0.00 0.00 0.00 3.01
4096 4611 5.358160 GGTATGCATGCCTATCTTTAATCCC 59.642 44.000 24.99 0.15 0.00 3.85
4114 4629 5.636837 ACGTCAATTACAAACATGGTATGC 58.363 37.500 0.00 0.00 0.00 3.14
4117 4632 9.433153 TGTAATACGTCAATTACAAACATGGTA 57.567 29.630 17.50 0.00 45.02 3.25
4146 4668 7.701539 AACTTATCATTACTGATTGCCACAA 57.298 32.000 0.39 0.00 42.23 3.33
4372 4895 5.124457 AGCCATGACACACAATGAAAGATAC 59.876 40.000 0.00 0.00 0.00 2.24
4506 5029 7.713764 AAAAAGGCAAGTCAAATCATAACAC 57.286 32.000 0.00 0.00 0.00 3.32
4545 5069 6.369065 AGTTGTTTCACGAATAGATGGAAGAC 59.631 38.462 0.00 0.00 0.00 3.01
4557 5081 7.759465 TGTGGTAAATAAAGTTGTTTCACGAA 58.241 30.769 0.00 0.00 0.00 3.85
4747 5272 6.173339 ACATTGTGTAAAGAGGTGATCGAAT 58.827 36.000 0.00 0.00 0.00 3.34
4829 5354 8.500753 TTCCTAATCATACAACAACCATACAC 57.499 34.615 0.00 0.00 0.00 2.90
4830 5355 9.337396 GATTCCTAATCATACAACAACCATACA 57.663 33.333 0.00 0.00 37.83 2.29
4919 5444 9.256477 AGCAAACTACAAATTAAACTAAAAGGC 57.744 29.630 0.00 0.00 0.00 4.35
5034 5559 4.596585 CACCCACCCACCCACACC 62.597 72.222 0.00 0.00 0.00 4.16
5066 5591 5.888161 AGTCACTTTGAAAGGTTCACATCTT 59.112 36.000 10.02 0.00 39.87 2.40
5067 5592 5.440610 AGTCACTTTGAAAGGTTCACATCT 58.559 37.500 10.02 0.00 39.87 2.90
5068 5593 5.559035 CGAGTCACTTTGAAAGGTTCACATC 60.559 44.000 10.02 0.00 39.87 3.06
5069 5594 4.273480 CGAGTCACTTTGAAAGGTTCACAT 59.727 41.667 10.02 0.00 39.87 3.21
5070 5595 3.621268 CGAGTCACTTTGAAAGGTTCACA 59.379 43.478 10.02 0.00 39.87 3.58
5071 5596 3.546218 GCGAGTCACTTTGAAAGGTTCAC 60.546 47.826 10.02 0.45 39.87 3.18
5072 5597 2.612212 GCGAGTCACTTTGAAAGGTTCA 59.388 45.455 10.02 0.00 38.04 3.18
5073 5598 2.348591 CGCGAGTCACTTTGAAAGGTTC 60.349 50.000 10.02 0.86 0.00 3.62
5074 5599 1.597663 CGCGAGTCACTTTGAAAGGTT 59.402 47.619 10.02 0.00 0.00 3.50
5075 5600 1.217882 CGCGAGTCACTTTGAAAGGT 58.782 50.000 10.02 0.00 0.00 3.50
5076 5601 0.512952 CCGCGAGTCACTTTGAAAGG 59.487 55.000 8.23 0.00 0.00 3.11
5077 5602 1.217882 ACCGCGAGTCACTTTGAAAG 58.782 50.000 8.23 2.89 0.00 2.62
5078 5603 1.329292 CAACCGCGAGTCACTTTGAAA 59.671 47.619 8.23 0.00 0.00 2.69
5079 5604 0.934496 CAACCGCGAGTCACTTTGAA 59.066 50.000 8.23 0.00 0.00 2.69
5080 5605 0.179094 ACAACCGCGAGTCACTTTGA 60.179 50.000 8.23 0.00 0.00 2.69
5120 5872 7.660208 TGAGGTTCTTCTACTCAAATGTTAACC 59.340 37.037 2.48 0.00 38.22 2.85
5186 5946 4.864247 GCAGAAAGAGCACAACAAGAAAAA 59.136 37.500 0.00 0.00 0.00 1.94
5213 5973 9.902196 CCGTTGGTTAAAAGAATAATAACAGTT 57.098 29.630 0.00 0.00 32.47 3.16
5283 6043 6.401153 GGTCAGAAGCAATAGAAAGTTACACG 60.401 42.308 0.00 0.00 0.00 4.49
5299 6059 1.669115 TTGCGCTCAGGTCAGAAGC 60.669 57.895 9.73 0.00 0.00 3.86
5340 6102 4.007644 CCGTGCAGTGAGCCCTGA 62.008 66.667 0.00 0.00 44.83 3.86
5341 6103 1.960040 TATCCGTGCAGTGAGCCCTG 61.960 60.000 0.00 0.00 44.83 4.45
5405 6167 4.992688 ACTCTAGCAATGAAGAGAACTCG 58.007 43.478 16.56 0.00 41.51 4.18
5438 6200 4.412796 TCTTTGCATCCATACTCCAGAG 57.587 45.455 0.00 0.00 0.00 3.35
5459 6221 8.079211 TGTATGCTAGACTAGACTCCATTTTT 57.921 34.615 13.91 0.00 0.00 1.94
5811 6573 2.992543 CACAGCTAGAGAACAACTGAGC 59.007 50.000 0.00 0.00 35.57 4.26
5955 6717 5.698832 TCTAAATCATGCAACAAACCTTCG 58.301 37.500 0.00 0.00 0.00 3.79
6109 6875 0.820891 ACAGCAGTGAACTTGCAGGG 60.821 55.000 0.00 0.00 0.00 4.45
6121 6887 5.945784 TGGCTTCAGAAAATTATACAGCAGT 59.054 36.000 0.00 0.00 0.00 4.40
6139 6905 3.879892 GGGATGACAGATAAAGTGGCTTC 59.120 47.826 0.00 0.00 0.00 3.86
6152 6918 3.616802 CGATCATGATCTGGGGATGACAG 60.617 52.174 28.48 8.82 35.72 3.51
6161 6927 0.788995 GAAGCGCGATCATGATCTGG 59.211 55.000 28.48 21.30 35.72 3.86
6175 6941 2.029838 AATAGCCACCAGAAGAAGCG 57.970 50.000 0.00 0.00 0.00 4.68
6182 6948 3.136443 CACCCAAGATAATAGCCACCAGA 59.864 47.826 0.00 0.00 0.00 3.86
6183 6949 3.117888 ACACCCAAGATAATAGCCACCAG 60.118 47.826 0.00 0.00 0.00 4.00
6225 6991 5.624509 CGAACATAAGAGGACCATCTTGACA 60.625 44.000 13.43 0.00 39.81 3.58
6311 7077 7.061673 GCATTGTTAAGTGCAAACGAAATATCA 59.938 33.333 0.00 0.00 40.94 2.15
6334 7100 0.322816 ACGCAGTTCCCAATCAGCAT 60.323 50.000 0.00 0.00 37.78 3.79
6455 7221 7.012894 TGAGACGACACAAATAAGGAACAAAAT 59.987 33.333 0.00 0.00 0.00 1.82
6464 7231 7.963981 ACAACATATGAGACGACACAAATAAG 58.036 34.615 10.38 0.00 0.00 1.73
6467 7234 6.128282 GGAACAACATATGAGACGACACAAAT 60.128 38.462 10.38 0.00 0.00 2.32
6471 7238 4.242475 TGGAACAACATATGAGACGACAC 58.758 43.478 10.38 0.00 31.92 3.67
6479 7246 7.701539 AATTACAAGCTGGAACAACATATGA 57.298 32.000 10.38 0.00 38.70 2.15
6481 7248 7.895759 ACAAATTACAAGCTGGAACAACATAT 58.104 30.769 0.00 0.00 38.70 1.78
6491 7258 7.756722 CCTAGATTCAAACAAATTACAAGCTGG 59.243 37.037 0.00 0.00 0.00 4.85
6544 7313 0.798009 GACGCCACGCCAAATTCATG 60.798 55.000 0.00 0.00 0.00 3.07
6562 7331 4.650734 TGTAGCATCATTGACAACCAAGA 58.349 39.130 0.00 0.00 38.31 3.02
6605 7377 3.108144 GGCAAAACGATATGCATCACAC 58.892 45.455 0.19 0.00 44.32 3.82
6627 7399 1.968017 CGAGTTGCACAGGTGGCAT 60.968 57.895 1.10 0.00 41.58 4.40
6644 7416 6.377327 AGCCTGTTGGACAATTTATAATCG 57.623 37.500 0.00 0.00 34.57 3.34
6651 7423 2.102925 CCACAAGCCTGTTGGACAATTT 59.897 45.455 0.00 0.00 31.64 1.82
6691 7463 0.451783 GTTCCCCGCTGCTTGTATTG 59.548 55.000 0.00 0.00 0.00 1.90
6692 7464 0.037590 TGTTCCCCGCTGCTTGTATT 59.962 50.000 0.00 0.00 0.00 1.89
6693 7465 0.676782 GTGTTCCCCGCTGCTTGTAT 60.677 55.000 0.00 0.00 0.00 2.29
6694 7466 1.302192 GTGTTCCCCGCTGCTTGTA 60.302 57.895 0.00 0.00 0.00 2.41
6696 7468 3.365265 GGTGTTCCCCGCTGCTTG 61.365 66.667 0.00 0.00 0.00 4.01
6698 7470 4.335647 CTGGTGTTCCCCGCTGCT 62.336 66.667 0.00 0.00 0.00 4.24
6710 7487 4.152402 CGTTTTCCTGACATTCTACTGGTG 59.848 45.833 0.00 0.00 0.00 4.17
6711 7488 4.039973 TCGTTTTCCTGACATTCTACTGGT 59.960 41.667 0.00 0.00 0.00 4.00
6712 7489 4.566004 TCGTTTTCCTGACATTCTACTGG 58.434 43.478 0.00 0.00 0.00 4.00
6713 7490 6.102663 AGATCGTTTTCCTGACATTCTACTG 58.897 40.000 0.00 0.00 0.00 2.74
6714 7491 6.287589 AGATCGTTTTCCTGACATTCTACT 57.712 37.500 0.00 0.00 0.00 2.57
6715 7492 6.969828 AAGATCGTTTTCCTGACATTCTAC 57.030 37.500 0.00 0.00 0.00 2.59
6716 7493 8.258007 ACATAAGATCGTTTTCCTGACATTCTA 58.742 33.333 0.00 0.00 0.00 2.10
6717 7494 7.106239 ACATAAGATCGTTTTCCTGACATTCT 58.894 34.615 0.00 0.00 0.00 2.40
6718 7495 7.064609 TGACATAAGATCGTTTTCCTGACATTC 59.935 37.037 0.00 0.00 0.00 2.67
6719 7496 6.878923 TGACATAAGATCGTTTTCCTGACATT 59.121 34.615 0.00 0.00 0.00 2.71
6720 7497 6.406370 TGACATAAGATCGTTTTCCTGACAT 58.594 36.000 0.00 0.00 0.00 3.06
6721 7498 5.789521 TGACATAAGATCGTTTTCCTGACA 58.210 37.500 0.00 0.00 0.00 3.58
6722 7499 6.721571 TTGACATAAGATCGTTTTCCTGAC 57.278 37.500 0.00 0.00 0.00 3.51
6723 7500 6.934645 AGTTTGACATAAGATCGTTTTCCTGA 59.065 34.615 0.00 0.00 0.00 3.86
6788 7569 7.172019 TGGAGTAAAAAGATACGAAGTTTGACC 59.828 37.037 0.00 0.00 37.78 4.02
6978 7772 5.183713 CCACATTAAGATTTGCCTTGAGTCA 59.816 40.000 0.00 0.00 0.00 3.41
6984 7778 7.775053 TTTACTCCACATTAAGATTTGCCTT 57.225 32.000 0.00 0.00 0.00 4.35
7013 7832 2.224450 GGTTGTATGTATTCCCTCCGGG 60.224 54.545 0.00 0.00 46.11 5.73
7014 7833 2.436542 TGGTTGTATGTATTCCCTCCGG 59.563 50.000 0.00 0.00 0.00 5.14
7023 7842 4.402829 TGGTTGCTGTTGGTTGTATGTAT 58.597 39.130 0.00 0.00 0.00 2.29
7032 7851 0.892063 ACGTTTTGGTTGCTGTTGGT 59.108 45.000 0.00 0.00 0.00 3.67
7033 7852 2.542824 CCTACGTTTTGGTTGCTGTTGG 60.543 50.000 0.00 0.00 0.00 3.77
7034 7853 2.098443 ACCTACGTTTTGGTTGCTGTTG 59.902 45.455 0.00 0.00 31.62 3.33
7035 7854 2.371306 ACCTACGTTTTGGTTGCTGTT 58.629 42.857 0.00 0.00 31.62 3.16
7036 7855 2.047002 ACCTACGTTTTGGTTGCTGT 57.953 45.000 0.00 0.00 31.62 4.40
7037 7856 3.395639 TCTACCTACGTTTTGGTTGCTG 58.604 45.455 11.75 3.27 37.74 4.41
7038 7857 3.756933 TCTACCTACGTTTTGGTTGCT 57.243 42.857 11.75 0.00 37.74 3.91
7039 7858 4.779987 CTTTCTACCTACGTTTTGGTTGC 58.220 43.478 11.75 0.00 37.74 4.17
7040 7859 4.273969 TGCTTTCTACCTACGTTTTGGTTG 59.726 41.667 11.75 10.31 37.74 3.77
7041 7860 4.274214 GTGCTTTCTACCTACGTTTTGGTT 59.726 41.667 11.75 0.00 37.74 3.67
7042 7861 3.811497 GTGCTTTCTACCTACGTTTTGGT 59.189 43.478 11.34 11.34 40.12 3.67
7043 7862 3.810941 TGTGCTTTCTACCTACGTTTTGG 59.189 43.478 0.00 0.00 0.00 3.28
7044 7863 4.510340 AGTGTGCTTTCTACCTACGTTTTG 59.490 41.667 0.00 0.00 0.00 2.44
7045 7864 4.700700 AGTGTGCTTTCTACCTACGTTTT 58.299 39.130 0.00 0.00 0.00 2.43
7046 7865 4.038883 AGAGTGTGCTTTCTACCTACGTTT 59.961 41.667 0.00 0.00 0.00 3.60
7047 7866 3.573110 AGAGTGTGCTTTCTACCTACGTT 59.427 43.478 0.00 0.00 0.00 3.99
7048 7867 3.057456 CAGAGTGTGCTTTCTACCTACGT 60.057 47.826 0.00 0.00 0.00 3.57
7049 7868 3.190744 TCAGAGTGTGCTTTCTACCTACG 59.809 47.826 0.00 0.00 0.00 3.51
7050 7869 4.785511 TCAGAGTGTGCTTTCTACCTAC 57.214 45.455 0.00 0.00 0.00 3.18
7051 7870 4.833380 AGTTCAGAGTGTGCTTTCTACCTA 59.167 41.667 0.00 0.00 0.00 3.08
7052 7871 3.643792 AGTTCAGAGTGTGCTTTCTACCT 59.356 43.478 0.00 0.00 0.00 3.08
7053 7872 3.996480 AGTTCAGAGTGTGCTTTCTACC 58.004 45.455 0.00 0.00 0.00 3.18
7054 7873 4.811557 ACAAGTTCAGAGTGTGCTTTCTAC 59.188 41.667 0.00 0.00 0.00 2.59
7055 7874 5.023533 ACAAGTTCAGAGTGTGCTTTCTA 57.976 39.130 0.00 0.00 0.00 2.10
7056 7875 3.878778 ACAAGTTCAGAGTGTGCTTTCT 58.121 40.909 0.00 0.00 0.00 2.52
7057 7876 5.523916 TCTTACAAGTTCAGAGTGTGCTTTC 59.476 40.000 0.00 0.00 0.00 2.62
7058 7877 5.428253 TCTTACAAGTTCAGAGTGTGCTTT 58.572 37.500 0.00 0.00 0.00 3.51
7059 7878 5.023533 TCTTACAAGTTCAGAGTGTGCTT 57.976 39.130 0.00 0.00 0.00 3.91
7060 7879 4.342378 TCTCTTACAAGTTCAGAGTGTGCT 59.658 41.667 8.24 0.00 36.27 4.40
7061 7880 4.621991 TCTCTTACAAGTTCAGAGTGTGC 58.378 43.478 8.24 0.00 36.27 4.57
7062 7881 5.221342 ACCTCTCTTACAAGTTCAGAGTGTG 60.221 44.000 8.24 0.00 36.27 3.82
7063 7882 4.896482 ACCTCTCTTACAAGTTCAGAGTGT 59.104 41.667 8.24 0.00 36.27 3.55
7064 7883 5.010112 TCACCTCTCTTACAAGTTCAGAGTG 59.990 44.000 8.24 6.60 36.27 3.51
7065 7884 5.141182 TCACCTCTCTTACAAGTTCAGAGT 58.859 41.667 8.24 0.00 36.27 3.24
7156 7976 3.620374 CCTGTTCTTCGATCCATTCTGTG 59.380 47.826 0.00 0.00 0.00 3.66
7177 7997 1.749258 CTTCCCCCGCTAAGTTGCC 60.749 63.158 0.00 0.00 0.00 4.52
7188 8008 2.443632 CTCCTATTTTCCTCCTTCCCCC 59.556 54.545 0.00 0.00 0.00 5.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.