Multiple sequence alignment - TraesCS5D01G464300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G464300 chr5D 100.000 2966 0 0 1 2966 507573709 507570744 0.000000e+00 5478.0
1 TraesCS5D01G464300 chr5D 90.020 1012 93 2 943 1954 507618055 507617052 0.000000e+00 1303.0
2 TraesCS5D01G464300 chr5D 78.692 1422 222 46 569 1947 507769067 507767684 0.000000e+00 872.0
3 TraesCS5D01G464300 chr5D 83.708 534 45 14 452 946 507618825 507618295 1.610000e-127 466.0
4 TraesCS5D01G464300 chr5D 97.333 150 3 1 2765 2914 113405567 113405419 1.360000e-63 254.0
5 TraesCS5D01G464300 chr5D 97.917 144 2 1 2765 2908 315916899 315917041 6.350000e-62 248.0
6 TraesCS5D01G464300 chr5D 96.552 58 1 1 2291 2348 24817621 24817677 8.750000e-16 95.3
7 TraesCS5D01G464300 chr5A 92.121 1028 73 2 943 1970 635291561 635290542 0.000000e+00 1443.0
8 TraesCS5D01G464300 chr5A 78.561 1418 238 36 569 1947 635381417 635380027 0.000000e+00 874.0
9 TraesCS5D01G464300 chr5A 77.754 953 155 30 569 1485 635337738 635336807 1.570000e-147 532.0
10 TraesCS5D01G464300 chr5A 84.510 510 36 10 470 939 635292633 635292127 5.790000e-127 464.0
11 TraesCS5D01G464300 chr5A 86.761 423 31 10 470 870 635294939 635294520 5.830000e-122 448.0
12 TraesCS5D01G464300 chr5A 86.041 437 34 11 470 884 635299551 635299120 7.540000e-121 444.0
13 TraesCS5D01G464300 chr5A 85.812 437 34 14 470 884 635301856 635301426 3.510000e-119 438.0
14 TraesCS5D01G464300 chr5A 85.126 437 38 11 470 884 635297244 635296813 3.530000e-114 422.0
15 TraesCS5D01G464300 chr5A 87.698 252 31 0 1696 1947 635336681 635336430 8.040000e-76 294.0
16 TraesCS5D01G464300 chr5A 85.116 215 21 8 1962 2173 635289300 635289094 3.000000e-50 209.0
17 TraesCS5D01G464300 chr6D 95.804 572 9 6 2348 2908 81585060 81584493 0.000000e+00 909.0
18 TraesCS5D01G464300 chr6D 98.297 411 7 0 2348 2758 364851805 364851395 0.000000e+00 721.0
19 TraesCS5D01G464300 chr6D 98.297 411 5 1 2348 2758 433715825 433716233 0.000000e+00 719.0
20 TraesCS5D01G464300 chr6D 96.528 144 5 0 2169 2312 364851941 364851798 3.820000e-59 239.0
21 TraesCS5D01G464300 chr6D 97.163 141 3 1 2172 2312 81585192 81585053 1.370000e-58 237.0
22 TraesCS5D01G464300 chr6D 97.761 134 3 0 2170 2303 433715690 433715823 6.390000e-57 231.0
23 TraesCS5D01G464300 chr5B 78.788 1419 235 43 569 1947 638304549 638303157 0.000000e+00 893.0
24 TraesCS5D01G464300 chr5B 100.000 30 0 0 2918 2947 241965407 241965436 4.130000e-04 56.5
25 TraesCS5D01G464300 chr7D 91.150 565 9 9 2348 2912 26557452 26557975 0.000000e+00 728.0
26 TraesCS5D01G464300 chr7D 98.282 291 4 1 2468 2758 220290796 220291085 2.640000e-140 508.0
27 TraesCS5D01G464300 chr7D 97.973 148 2 1 2765 2912 220291424 220291570 3.790000e-64 255.0
28 TraesCS5D01G464300 chr7D 97.297 148 3 1 2765 2912 63480821 63480967 1.770000e-62 250.0
29 TraesCS5D01G464300 chr7D 96.644 149 4 1 2765 2913 619381093 619381240 2.280000e-61 246.0
30 TraesCS5D01G464300 chr7D 98.519 135 2 0 2172 2306 220290600 220290734 3.820000e-59 239.0
31 TraesCS5D01G464300 chr7D 100.000 127 0 0 2348 2474 220290733 220290859 4.940000e-58 235.0
32 TraesCS5D01G464300 chr7D 97.778 135 3 0 2172 2306 26557319 26557453 1.780000e-57 233.0
33 TraesCS5D01G464300 chr1D 97.585 414 7 1 2348 2758 225561688 225561275 0.000000e+00 706.0
34 TraesCS5D01G464300 chr1D 78.761 565 101 12 1352 1914 416228165 416227618 7.820000e-96 361.0
35 TraesCS5D01G464300 chr1D 97.917 144 2 1 2765 2908 225558277 225558135 6.350000e-62 248.0
36 TraesCS5D01G464300 chr1D 96.454 141 5 0 2172 2312 225561821 225561681 1.780000e-57 233.0
37 TraesCS5D01G464300 chr1D 98.039 51 0 1 2299 2348 459906287 459906237 1.460000e-13 87.9
38 TraesCS5D01G464300 chr4D 98.966 387 4 0 2348 2734 349984612 349984998 0.000000e+00 693.0
39 TraesCS5D01G464300 chr4D 95.541 157 5 2 2753 2908 349984986 349985141 1.770000e-62 250.0
40 TraesCS5D01G464300 chr4D 98.507 134 2 0 2173 2306 349984480 349984613 1.370000e-58 237.0
41 TraesCS5D01G464300 chr4D 98.039 51 0 1 2299 2348 123267171 123267121 1.460000e-13 87.9
42 TraesCS5D01G464300 chr3D 96.915 389 12 0 2348 2736 289030555 289030167 0.000000e+00 652.0
43 TraesCS5D01G464300 chr3D 96.815 157 3 2 2753 2908 289030181 289030026 8.150000e-66 261.0
44 TraesCS5D01G464300 chr3D 97.163 141 4 0 2172 2312 289030688 289030548 3.820000e-59 239.0
45 TraesCS5D01G464300 chr3B 91.915 470 24 9 2453 2911 239251265 239250799 0.000000e+00 645.0
46 TraesCS5D01G464300 chr2B 96.564 291 9 1 2468 2758 75698618 75698329 5.750000e-132 481.0
47 TraesCS5D01G464300 chr2B 99.225 129 1 0 2346 2474 568822702 568822830 1.780000e-57 233.0
48 TraesCS5D01G464300 chr1B 78.559 583 100 18 1352 1929 562564043 562563481 7.820000e-96 361.0
49 TraesCS5D01G464300 chr1B 77.757 544 102 13 1352 1893 562545015 562544489 1.720000e-82 316.0
50 TraesCS5D01G464300 chrUn 77.949 585 109 11 1349 1929 82309722 82310290 6.080000e-92 348.0
51 TraesCS5D01G464300 chrUn 78.007 582 108 11 1352 1929 286812644 286812079 6.080000e-92 348.0
52 TraesCS5D01G464300 chrUn 98.039 51 0 1 2299 2348 209402683 209402733 1.460000e-13 87.9
53 TraesCS5D01G464300 chrUn 98.039 51 0 1 2299 2348 267895625 267895575 1.460000e-13 87.9
54 TraesCS5D01G464300 chrUn 98.039 51 0 1 2299 2348 346040086 346040136 1.460000e-13 87.9
55 TraesCS5D01G464300 chrUn 98.039 51 0 1 2299 2348 427610056 427610106 1.460000e-13 87.9
56 TraesCS5D01G464300 chr7B 97.778 135 3 0 2172 2306 641640852 641640986 1.780000e-57 233.0
57 TraesCS5D01G464300 chr7B 100.000 29 0 0 2919 2947 32126488 32126516 1.000000e-03 54.7
58 TraesCS5D01G464300 chr1A 98.039 51 0 1 2299 2348 94595583 94595533 1.460000e-13 87.9
59 TraesCS5D01G464300 chr1A 98.039 51 0 1 2299 2348 94711448 94711498 1.460000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G464300 chr5D 507570744 507573709 2965 True 5478.000000 5478 100.000000 1 2966 1 chr5D.!!$R2 2965
1 TraesCS5D01G464300 chr5D 507617052 507618825 1773 True 884.500000 1303 86.864000 452 1954 2 chr5D.!!$R4 1502
2 TraesCS5D01G464300 chr5D 507767684 507769067 1383 True 872.000000 872 78.692000 569 1947 1 chr5D.!!$R3 1378
3 TraesCS5D01G464300 chr5A 635380027 635381417 1390 True 874.000000 874 78.561000 569 1947 1 chr5A.!!$R1 1378
4 TraesCS5D01G464300 chr5A 635289094 635301856 12762 True 552.571429 1443 86.498143 470 2173 7 chr5A.!!$R2 1703
5 TraesCS5D01G464300 chr5A 635336430 635337738 1308 True 413.000000 532 82.726000 569 1947 2 chr5A.!!$R3 1378
6 TraesCS5D01G464300 chr6D 81584493 81585192 699 True 573.000000 909 96.483500 2172 2908 2 chr6D.!!$R1 736
7 TraesCS5D01G464300 chr6D 364851395 364851941 546 True 480.000000 721 97.412500 2169 2758 2 chr6D.!!$R2 589
8 TraesCS5D01G464300 chr6D 433715690 433716233 543 False 475.000000 719 98.029000 2170 2758 2 chr6D.!!$F1 588
9 TraesCS5D01G464300 chr5B 638303157 638304549 1392 True 893.000000 893 78.788000 569 1947 1 chr5B.!!$R1 1378
10 TraesCS5D01G464300 chr7D 26557319 26557975 656 False 480.500000 728 94.464000 2172 2912 2 chr7D.!!$F3 740
11 TraesCS5D01G464300 chr7D 220290600 220291570 970 False 309.250000 508 98.693500 2172 2912 4 chr7D.!!$F4 740
12 TraesCS5D01G464300 chr1D 225558135 225561821 3686 True 395.666667 706 97.318667 2172 2908 3 chr1D.!!$R3 736
13 TraesCS5D01G464300 chr1D 416227618 416228165 547 True 361.000000 361 78.761000 1352 1914 1 chr1D.!!$R1 562
14 TraesCS5D01G464300 chr4D 349984480 349985141 661 False 393.333333 693 97.671333 2173 2908 3 chr4D.!!$F1 735
15 TraesCS5D01G464300 chr3D 289030026 289030688 662 True 384.000000 652 96.964333 2172 2908 3 chr3D.!!$R1 736
16 TraesCS5D01G464300 chr1B 562563481 562564043 562 True 361.000000 361 78.559000 1352 1929 1 chr1B.!!$R2 577
17 TraesCS5D01G464300 chr1B 562544489 562545015 526 True 316.000000 316 77.757000 1352 1893 1 chr1B.!!$R1 541
18 TraesCS5D01G464300 chrUn 82309722 82310290 568 False 348.000000 348 77.949000 1349 1929 1 chrUn.!!$F1 580
19 TraesCS5D01G464300 chrUn 286812079 286812644 565 True 348.000000 348 78.007000 1352 1929 1 chrUn.!!$R2 577

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
247 248 0.036765 AACGAAGCATCTAACGGCCA 60.037 50.0 2.24 0.00 0.00 5.36 F
275 276 0.100682 ACGATTCGGTCAGTCCATCG 59.899 55.0 11.29 5.29 43.37 3.84 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1365 11207 0.546747 AGATGACGGACTTTGGGGGA 60.547 55.0 0.0 0.0 0.00 4.81 R
1965 11810 1.165270 ATGCACCGAGCCACTTAAAC 58.835 50.0 0.0 0.0 44.83 2.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 1.187087 TGAAAAAGTTGCAACGGGGT 58.813 45.000 23.21 10.89 0.00 4.95
20 21 1.135333 TGAAAAAGTTGCAACGGGGTC 59.865 47.619 23.21 18.52 0.00 4.46
21 22 1.135333 GAAAAAGTTGCAACGGGGTCA 59.865 47.619 23.21 0.00 0.00 4.02
22 23 1.187087 AAAAGTTGCAACGGGGTCAA 58.813 45.000 23.21 0.00 0.00 3.18
23 24 0.458260 AAAGTTGCAACGGGGTCAAC 59.542 50.000 23.21 0.00 40.08 3.18
24 25 1.720694 AAGTTGCAACGGGGTCAACG 61.721 55.000 23.21 0.00 43.35 4.10
25 26 2.902846 TTGCAACGGGGTCAACGG 60.903 61.111 0.00 0.00 35.23 4.44
26 27 3.402095 TTGCAACGGGGTCAACGGA 62.402 57.895 0.00 0.00 35.23 4.69
27 28 3.351416 GCAACGGGGTCAACGGAC 61.351 66.667 0.00 0.00 43.55 4.79
28 29 2.424302 CAACGGGGTCAACGGACT 59.576 61.111 0.00 0.00 43.77 3.85
29 30 1.227734 CAACGGGGTCAACGGACTT 60.228 57.895 0.00 0.00 43.77 3.01
30 31 0.816421 CAACGGGGTCAACGGACTTT 60.816 55.000 0.00 0.00 43.77 2.66
31 32 0.107066 AACGGGGTCAACGGACTTTT 60.107 50.000 0.00 0.00 43.77 2.27
32 33 0.816421 ACGGGGTCAACGGACTTTTG 60.816 55.000 0.00 0.00 43.77 2.44
33 34 0.816421 CGGGGTCAACGGACTTTTGT 60.816 55.000 0.00 0.00 43.77 2.83
34 35 1.395635 GGGGTCAACGGACTTTTGTT 58.604 50.000 0.00 0.00 43.77 2.83
35 36 2.574450 GGGGTCAACGGACTTTTGTTA 58.426 47.619 0.00 0.00 43.77 2.41
36 37 3.151554 GGGGTCAACGGACTTTTGTTAT 58.848 45.455 0.00 0.00 43.77 1.89
37 38 3.570975 GGGGTCAACGGACTTTTGTTATT 59.429 43.478 0.00 0.00 43.77 1.40
38 39 4.038282 GGGGTCAACGGACTTTTGTTATTT 59.962 41.667 0.00 0.00 43.77 1.40
39 40 5.452216 GGGGTCAACGGACTTTTGTTATTTT 60.452 40.000 0.00 0.00 43.77 1.82
40 41 5.460748 GGGTCAACGGACTTTTGTTATTTTG 59.539 40.000 0.00 0.00 43.77 2.44
41 42 5.051307 GGTCAACGGACTTTTGTTATTTTGC 60.051 40.000 0.00 0.00 43.77 3.68
42 43 4.735822 TCAACGGACTTTTGTTATTTTGCG 59.264 37.500 0.00 0.00 0.00 4.85
43 44 4.555348 ACGGACTTTTGTTATTTTGCGA 57.445 36.364 0.00 0.00 0.00 5.10
44 45 5.116069 ACGGACTTTTGTTATTTTGCGAT 57.884 34.783 0.00 0.00 0.00 4.58
45 46 5.525199 ACGGACTTTTGTTATTTTGCGATT 58.475 33.333 0.00 0.00 0.00 3.34
46 47 5.980715 ACGGACTTTTGTTATTTTGCGATTT 59.019 32.000 0.00 0.00 0.00 2.17
47 48 6.477360 ACGGACTTTTGTTATTTTGCGATTTT 59.523 30.769 0.00 0.00 0.00 1.82
48 49 6.785164 CGGACTTTTGTTATTTTGCGATTTTG 59.215 34.615 0.00 0.00 0.00 2.44
49 50 7.306283 CGGACTTTTGTTATTTTGCGATTTTGA 60.306 33.333 0.00 0.00 0.00 2.69
50 51 7.792048 GGACTTTTGTTATTTTGCGATTTTGAC 59.208 33.333 0.00 0.00 0.00 3.18
51 52 7.334009 ACTTTTGTTATTTTGCGATTTTGACG 58.666 30.769 0.00 0.00 0.00 4.35
52 53 5.814314 TTGTTATTTTGCGATTTTGACGG 57.186 34.783 0.00 0.00 0.00 4.79
53 54 3.670991 TGTTATTTTGCGATTTTGACGGC 59.329 39.130 0.00 0.00 0.00 5.68
54 55 1.335935 ATTTTGCGATTTTGACGGCG 58.664 45.000 4.80 4.80 0.00 6.46
55 56 0.308068 TTTTGCGATTTTGACGGCGA 59.692 45.000 16.62 0.00 0.00 5.54
56 57 0.384974 TTTGCGATTTTGACGGCGAC 60.385 50.000 16.62 8.59 0.00 5.19
69 70 4.135493 GCGACGAGCTTTGACGGC 62.135 66.667 0.00 1.55 44.04 5.68
71 72 2.430244 GACGAGCTTTGACGGCGA 60.430 61.111 16.62 0.00 34.52 5.54
72 73 2.430921 ACGAGCTTTGACGGCGAG 60.431 61.111 16.62 0.20 34.52 5.03
73 74 3.843240 CGAGCTTTGACGGCGAGC 61.843 66.667 16.62 12.68 36.68 5.03
74 75 3.843240 GAGCTTTGACGGCGAGCG 61.843 66.667 16.62 0.00 41.19 5.03
75 76 4.664677 AGCTTTGACGGCGAGCGT 62.665 61.111 16.62 0.00 41.19 5.07
76 77 4.135493 GCTTTGACGGCGAGCGTC 62.135 66.667 16.62 7.00 36.95 5.19
77 78 2.733218 CTTTGACGGCGAGCGTCA 60.733 61.111 16.62 11.86 43.45 4.35
78 79 2.720758 CTTTGACGGCGAGCGTCAG 61.721 63.158 16.62 3.54 45.31 3.51
79 80 4.717629 TTGACGGCGAGCGTCAGG 62.718 66.667 16.62 0.00 45.31 3.86
92 93 4.392166 TCAGGGGCGAGGGCAGTA 62.392 66.667 0.00 0.00 42.47 2.74
93 94 3.399181 CAGGGGCGAGGGCAGTAA 61.399 66.667 0.00 0.00 42.47 2.24
94 95 3.083997 AGGGGCGAGGGCAGTAAG 61.084 66.667 0.00 0.00 42.47 2.34
95 96 4.176752 GGGGCGAGGGCAGTAAGG 62.177 72.222 0.00 0.00 42.47 2.69
96 97 4.176752 GGGCGAGGGCAGTAAGGG 62.177 72.222 0.00 0.00 42.47 3.95
97 98 4.858680 GGCGAGGGCAGTAAGGGC 62.859 72.222 0.00 0.00 42.47 5.19
99 100 4.530857 CGAGGGCAGTAAGGGCGG 62.531 72.222 0.00 0.00 0.00 6.13
100 101 4.858680 GAGGGCAGTAAGGGCGGC 62.859 72.222 0.00 0.00 0.00 6.53
125 126 4.373116 GCCGCTTGACACGAGGGA 62.373 66.667 3.93 0.00 0.00 4.20
126 127 2.125912 CCGCTTGACACGAGGGAG 60.126 66.667 0.00 0.00 0.00 4.30
127 128 2.651361 CGCTTGACACGAGGGAGT 59.349 61.111 0.00 0.00 0.00 3.85
128 129 1.734477 CGCTTGACACGAGGGAGTG 60.734 63.158 0.00 0.00 46.83 3.51
129 130 1.374758 GCTTGACACGAGGGAGTGG 60.375 63.158 0.00 0.00 45.80 4.00
130 131 1.816863 GCTTGACACGAGGGAGTGGA 61.817 60.000 0.00 0.00 45.80 4.02
131 132 0.679505 CTTGACACGAGGGAGTGGAA 59.320 55.000 0.00 0.00 45.80 3.53
132 133 0.679505 TTGACACGAGGGAGTGGAAG 59.320 55.000 0.00 0.00 45.80 3.46
133 134 1.185618 TGACACGAGGGAGTGGAAGG 61.186 60.000 0.00 0.00 45.80 3.46
134 135 2.266055 CACGAGGGAGTGGAAGGC 59.734 66.667 0.00 0.00 38.40 4.35
135 136 3.382832 ACGAGGGAGTGGAAGGCG 61.383 66.667 0.00 0.00 0.00 5.52
136 137 4.821589 CGAGGGAGTGGAAGGCGC 62.822 72.222 0.00 0.00 0.00 6.53
137 138 4.821589 GAGGGAGTGGAAGGCGCG 62.822 72.222 0.00 0.00 0.00 6.86
155 156 4.742201 CAGCGTGACACGGGGGAG 62.742 72.222 27.86 0.78 42.82 4.30
156 157 4.988716 AGCGTGACACGGGGGAGA 62.989 66.667 27.86 0.00 42.82 3.71
157 158 4.436998 GCGTGACACGGGGGAGAG 62.437 72.222 27.86 0.00 42.82 3.20
158 159 2.675423 CGTGACACGGGGGAGAGA 60.675 66.667 20.26 0.00 38.08 3.10
159 160 2.273179 CGTGACACGGGGGAGAGAA 61.273 63.158 20.26 0.00 38.08 2.87
160 161 1.592223 GTGACACGGGGGAGAGAAG 59.408 63.158 0.00 0.00 0.00 2.85
161 162 1.609501 TGACACGGGGGAGAGAAGG 60.610 63.158 0.00 0.00 0.00 3.46
162 163 2.284699 ACACGGGGGAGAGAAGGG 60.285 66.667 0.00 0.00 0.00 3.95
163 164 3.787001 CACGGGGGAGAGAAGGGC 61.787 72.222 0.00 0.00 0.00 5.19
184 185 4.790962 CGCCATGGCCTGTGCTCT 62.791 66.667 30.79 0.00 37.98 4.09
185 186 2.362120 GCCATGGCCTGTGCTCTT 60.362 61.111 27.24 0.00 37.74 2.85
186 187 2.707849 GCCATGGCCTGTGCTCTTG 61.708 63.158 27.24 0.00 37.74 3.02
187 188 1.303888 CCATGGCCTGTGCTCTTGT 60.304 57.895 3.32 0.00 37.74 3.16
188 189 1.592400 CCATGGCCTGTGCTCTTGTG 61.592 60.000 3.32 0.00 37.74 3.33
189 190 0.892358 CATGGCCTGTGCTCTTGTGT 60.892 55.000 3.32 0.00 37.74 3.72
190 191 0.607489 ATGGCCTGTGCTCTTGTGTC 60.607 55.000 3.32 0.00 37.74 3.67
191 192 1.072159 GGCCTGTGCTCTTGTGTCT 59.928 57.895 0.00 0.00 37.74 3.41
192 193 0.536006 GGCCTGTGCTCTTGTGTCTT 60.536 55.000 0.00 0.00 37.74 3.01
193 194 0.871057 GCCTGTGCTCTTGTGTCTTC 59.129 55.000 0.00 0.00 33.53 2.87
194 195 1.811558 GCCTGTGCTCTTGTGTCTTCA 60.812 52.381 0.00 0.00 33.53 3.02
195 196 2.141517 CCTGTGCTCTTGTGTCTTCAG 58.858 52.381 0.00 0.00 0.00 3.02
196 197 2.224137 CCTGTGCTCTTGTGTCTTCAGA 60.224 50.000 0.00 0.00 0.00 3.27
197 198 3.556633 CCTGTGCTCTTGTGTCTTCAGAT 60.557 47.826 0.00 0.00 0.00 2.90
198 199 3.396560 TGTGCTCTTGTGTCTTCAGATG 58.603 45.455 0.00 0.00 0.00 2.90
199 200 2.159234 GTGCTCTTGTGTCTTCAGATGC 59.841 50.000 0.00 0.00 0.00 3.91
200 201 1.392853 GCTCTTGTGTCTTCAGATGCG 59.607 52.381 0.00 0.00 0.00 4.73
201 202 2.928301 GCTCTTGTGTCTTCAGATGCGA 60.928 50.000 0.00 0.00 0.00 5.10
202 203 3.320626 CTCTTGTGTCTTCAGATGCGAA 58.679 45.455 0.00 0.00 0.00 4.70
203 204 3.320626 TCTTGTGTCTTCAGATGCGAAG 58.679 45.455 0.00 0.00 43.17 3.79
209 210 3.516981 TCTTCAGATGCGAAGAGAAGG 57.483 47.619 0.00 0.00 45.00 3.46
210 211 2.167281 TCTTCAGATGCGAAGAGAAGGG 59.833 50.000 0.00 0.00 45.00 3.95
211 212 0.826715 TCAGATGCGAAGAGAAGGGG 59.173 55.000 0.00 0.00 0.00 4.79
212 213 0.539051 CAGATGCGAAGAGAAGGGGT 59.461 55.000 0.00 0.00 0.00 4.95
213 214 0.539051 AGATGCGAAGAGAAGGGGTG 59.461 55.000 0.00 0.00 0.00 4.61
214 215 0.537188 GATGCGAAGAGAAGGGGTGA 59.463 55.000 0.00 0.00 0.00 4.02
215 216 1.139853 GATGCGAAGAGAAGGGGTGAT 59.860 52.381 0.00 0.00 0.00 3.06
216 217 1.860641 TGCGAAGAGAAGGGGTGATA 58.139 50.000 0.00 0.00 0.00 2.15
217 218 2.184533 TGCGAAGAGAAGGGGTGATAA 58.815 47.619 0.00 0.00 0.00 1.75
218 219 2.168521 TGCGAAGAGAAGGGGTGATAAG 59.831 50.000 0.00 0.00 0.00 1.73
219 220 2.431057 GCGAAGAGAAGGGGTGATAAGA 59.569 50.000 0.00 0.00 0.00 2.10
220 221 3.738590 GCGAAGAGAAGGGGTGATAAGAC 60.739 52.174 0.00 0.00 0.00 3.01
221 222 3.489398 CGAAGAGAAGGGGTGATAAGACG 60.489 52.174 0.00 0.00 0.00 4.18
222 223 3.383698 AGAGAAGGGGTGATAAGACGA 57.616 47.619 0.00 0.00 0.00 4.20
223 224 3.917300 AGAGAAGGGGTGATAAGACGAT 58.083 45.455 0.00 0.00 0.00 3.73
224 225 3.639094 AGAGAAGGGGTGATAAGACGATG 59.361 47.826 0.00 0.00 0.00 3.84
225 226 2.700897 AGAAGGGGTGATAAGACGATGG 59.299 50.000 0.00 0.00 0.00 3.51
226 227 2.471815 AGGGGTGATAAGACGATGGA 57.528 50.000 0.00 0.00 0.00 3.41
227 228 2.320781 AGGGGTGATAAGACGATGGAG 58.679 52.381 0.00 0.00 0.00 3.86
228 229 2.091278 AGGGGTGATAAGACGATGGAGA 60.091 50.000 0.00 0.00 0.00 3.71
229 230 2.698797 GGGGTGATAAGACGATGGAGAA 59.301 50.000 0.00 0.00 0.00 2.87
230 231 3.492829 GGGGTGATAAGACGATGGAGAAC 60.493 52.174 0.00 0.00 0.00 3.01
231 232 3.372954 GGTGATAAGACGATGGAGAACG 58.627 50.000 0.00 0.00 0.00 3.95
232 233 3.066342 GGTGATAAGACGATGGAGAACGA 59.934 47.826 0.00 0.00 0.00 3.85
233 234 4.439700 GGTGATAAGACGATGGAGAACGAA 60.440 45.833 0.00 0.00 0.00 3.85
234 235 4.735822 GTGATAAGACGATGGAGAACGAAG 59.264 45.833 0.00 0.00 0.00 3.79
235 236 1.997669 AAGACGATGGAGAACGAAGC 58.002 50.000 0.00 0.00 0.00 3.86
236 237 0.888619 AGACGATGGAGAACGAAGCA 59.111 50.000 0.00 0.00 0.00 3.91
237 238 1.478510 AGACGATGGAGAACGAAGCAT 59.521 47.619 0.00 0.00 0.00 3.79
238 239 1.855360 GACGATGGAGAACGAAGCATC 59.145 52.381 0.00 0.00 0.00 3.91
239 240 1.478510 ACGATGGAGAACGAAGCATCT 59.521 47.619 0.00 0.00 0.00 2.90
240 241 2.688446 ACGATGGAGAACGAAGCATCTA 59.312 45.455 0.00 0.00 0.00 1.98
241 242 3.130516 ACGATGGAGAACGAAGCATCTAA 59.869 43.478 0.00 0.00 0.00 2.10
242 243 3.487574 CGATGGAGAACGAAGCATCTAAC 59.512 47.826 0.00 0.00 0.00 2.34
243 244 2.876091 TGGAGAACGAAGCATCTAACG 58.124 47.619 0.00 0.00 0.00 3.18
244 245 2.194271 GGAGAACGAAGCATCTAACGG 58.806 52.381 0.00 0.00 0.00 4.44
245 246 1.588861 GAGAACGAAGCATCTAACGGC 59.411 52.381 0.00 0.00 0.00 5.68
246 247 0.651031 GAACGAAGCATCTAACGGCC 59.349 55.000 0.00 0.00 0.00 6.13
247 248 0.036765 AACGAAGCATCTAACGGCCA 60.037 50.000 2.24 0.00 0.00 5.36
248 249 0.739813 ACGAAGCATCTAACGGCCAC 60.740 55.000 2.24 0.00 0.00 5.01
250 251 2.036764 GAAGCATCTAACGGCCACGC 62.037 60.000 2.24 0.00 46.04 5.34
251 252 3.925238 GCATCTAACGGCCACGCG 61.925 66.667 3.53 3.53 46.04 6.01
252 253 3.925238 CATCTAACGGCCACGCGC 61.925 66.667 5.73 0.00 46.04 6.86
268 269 2.497092 CGCGTGACGATTCGGTCAG 61.497 63.158 10.10 7.17 46.81 3.51
269 270 1.443872 GCGTGACGATTCGGTCAGT 60.444 57.895 10.10 0.00 46.81 3.41
270 271 1.403972 GCGTGACGATTCGGTCAGTC 61.404 60.000 10.10 0.00 46.81 3.51
271 272 0.797249 CGTGACGATTCGGTCAGTCC 60.797 60.000 11.29 0.73 46.81 3.85
272 273 0.242825 GTGACGATTCGGTCAGTCCA 59.757 55.000 11.29 0.00 46.81 4.02
273 274 1.135083 GTGACGATTCGGTCAGTCCAT 60.135 52.381 11.29 0.00 46.81 3.41
274 275 1.134367 TGACGATTCGGTCAGTCCATC 59.866 52.381 11.29 0.00 41.76 3.51
275 276 0.100682 ACGATTCGGTCAGTCCATCG 59.899 55.000 11.29 5.29 43.37 3.84
276 277 0.595053 CGATTCGGTCAGTCCATCGG 60.595 60.000 0.00 0.00 38.00 4.18
277 278 0.876342 GATTCGGTCAGTCCATCGGC 60.876 60.000 0.00 0.00 35.57 5.54
278 279 1.613317 ATTCGGTCAGTCCATCGGCA 61.613 55.000 0.00 0.00 35.57 5.69
279 280 2.501223 TTCGGTCAGTCCATCGGCAC 62.501 60.000 0.00 0.00 35.57 5.01
280 281 2.125106 GGTCAGTCCATCGGCACC 60.125 66.667 0.00 0.00 35.97 5.01
281 282 2.660064 GGTCAGTCCATCGGCACCT 61.660 63.158 0.00 0.00 35.97 4.00
282 283 1.327690 GGTCAGTCCATCGGCACCTA 61.328 60.000 0.00 0.00 35.97 3.08
283 284 0.753262 GTCAGTCCATCGGCACCTAT 59.247 55.000 0.00 0.00 0.00 2.57
284 285 1.040646 TCAGTCCATCGGCACCTATC 58.959 55.000 0.00 0.00 0.00 2.08
285 286 0.752658 CAGTCCATCGGCACCTATCA 59.247 55.000 0.00 0.00 0.00 2.15
286 287 0.753262 AGTCCATCGGCACCTATCAC 59.247 55.000 0.00 0.00 0.00 3.06
287 288 0.753262 GTCCATCGGCACCTATCACT 59.247 55.000 0.00 0.00 0.00 3.41
288 289 0.752658 TCCATCGGCACCTATCACTG 59.247 55.000 0.00 0.00 0.00 3.66
289 290 0.250038 CCATCGGCACCTATCACTGG 60.250 60.000 0.00 0.00 0.00 4.00
290 291 0.465705 CATCGGCACCTATCACTGGT 59.534 55.000 0.00 0.00 38.53 4.00
291 292 0.753262 ATCGGCACCTATCACTGGTC 59.247 55.000 0.00 0.00 35.28 4.02
292 293 0.613572 TCGGCACCTATCACTGGTCA 60.614 55.000 0.00 0.00 35.28 4.02
293 294 0.249120 CGGCACCTATCACTGGTCAA 59.751 55.000 0.00 0.00 35.28 3.18
294 295 1.134401 CGGCACCTATCACTGGTCAAT 60.134 52.381 0.00 0.00 35.28 2.57
295 296 2.680805 CGGCACCTATCACTGGTCAATT 60.681 50.000 0.00 0.00 35.28 2.32
296 297 3.356290 GGCACCTATCACTGGTCAATTT 58.644 45.455 0.00 0.00 35.28 1.82
297 298 3.378427 GGCACCTATCACTGGTCAATTTC 59.622 47.826 0.00 0.00 35.28 2.17
298 299 4.009675 GCACCTATCACTGGTCAATTTCA 58.990 43.478 0.00 0.00 35.28 2.69
299 300 4.458989 GCACCTATCACTGGTCAATTTCAA 59.541 41.667 0.00 0.00 35.28 2.69
300 301 5.048083 GCACCTATCACTGGTCAATTTCAAA 60.048 40.000 0.00 0.00 35.28 2.69
301 302 6.350445 GCACCTATCACTGGTCAATTTCAAAT 60.350 38.462 0.00 0.00 35.28 2.32
302 303 7.031372 CACCTATCACTGGTCAATTTCAAATG 58.969 38.462 0.00 0.00 35.28 2.32
303 304 6.153340 ACCTATCACTGGTCAATTTCAAATGG 59.847 38.462 0.00 0.00 31.03 3.16
304 305 6.153340 CCTATCACTGGTCAATTTCAAATGGT 59.847 38.462 0.00 0.00 0.00 3.55
305 306 5.867903 TCACTGGTCAATTTCAAATGGTT 57.132 34.783 0.00 0.00 0.00 3.67
306 307 5.599732 TCACTGGTCAATTTCAAATGGTTG 58.400 37.500 0.00 0.00 35.95 3.77
307 308 5.128499 TCACTGGTCAATTTCAAATGGTTGT 59.872 36.000 0.00 0.00 36.07 3.32
308 309 5.816777 CACTGGTCAATTTCAAATGGTTGTT 59.183 36.000 0.00 0.00 36.07 2.83
309 310 6.983307 CACTGGTCAATTTCAAATGGTTGTTA 59.017 34.615 0.00 0.00 36.07 2.41
310 311 7.169645 CACTGGTCAATTTCAAATGGTTGTTAG 59.830 37.037 0.00 0.00 36.07 2.34
311 312 7.118496 TGGTCAATTTCAAATGGTTGTTAGT 57.882 32.000 0.00 0.00 36.07 2.24
312 313 6.983307 TGGTCAATTTCAAATGGTTGTTAGTG 59.017 34.615 0.00 0.00 36.07 2.74
313 314 6.423604 GGTCAATTTCAAATGGTTGTTAGTGG 59.576 38.462 0.00 0.00 36.07 4.00
314 315 6.983890 GTCAATTTCAAATGGTTGTTAGTGGT 59.016 34.615 0.00 0.00 36.07 4.16
315 316 8.138712 GTCAATTTCAAATGGTTGTTAGTGGTA 58.861 33.333 0.00 0.00 36.07 3.25
316 317 8.356657 TCAATTTCAAATGGTTGTTAGTGGTAG 58.643 33.333 0.00 0.00 36.07 3.18
317 318 7.833285 ATTTCAAATGGTTGTTAGTGGTAGT 57.167 32.000 0.00 0.00 36.07 2.73
318 319 8.927675 ATTTCAAATGGTTGTTAGTGGTAGTA 57.072 30.769 0.00 0.00 36.07 1.82
319 320 7.972832 TTCAAATGGTTGTTAGTGGTAGTAG 57.027 36.000 0.00 0.00 36.07 2.57
320 321 7.305813 TCAAATGGTTGTTAGTGGTAGTAGA 57.694 36.000 0.00 0.00 36.07 2.59
321 322 7.913789 TCAAATGGTTGTTAGTGGTAGTAGAT 58.086 34.615 0.00 0.00 36.07 1.98
322 323 8.038944 TCAAATGGTTGTTAGTGGTAGTAGATC 58.961 37.037 0.00 0.00 36.07 2.75
323 324 7.490657 AATGGTTGTTAGTGGTAGTAGATCA 57.509 36.000 0.00 0.00 0.00 2.92
324 325 6.276832 TGGTTGTTAGTGGTAGTAGATCAC 57.723 41.667 0.00 0.00 0.00 3.06
325 326 5.776208 TGGTTGTTAGTGGTAGTAGATCACA 59.224 40.000 0.00 0.00 34.17 3.58
326 327 6.098017 GGTTGTTAGTGGTAGTAGATCACAC 58.902 44.000 0.00 0.00 34.17 3.82
327 328 5.556355 TGTTAGTGGTAGTAGATCACACG 57.444 43.478 0.00 0.00 37.16 4.49
328 329 5.247862 TGTTAGTGGTAGTAGATCACACGA 58.752 41.667 0.00 0.00 37.16 4.35
329 330 5.884232 TGTTAGTGGTAGTAGATCACACGAT 59.116 40.000 0.00 0.00 37.16 3.73
330 331 4.902443 AGTGGTAGTAGATCACACGATG 57.098 45.455 0.00 0.00 37.16 3.84
331 332 3.066900 AGTGGTAGTAGATCACACGATGC 59.933 47.826 0.00 0.00 37.16 3.91
332 333 3.066900 GTGGTAGTAGATCACACGATGCT 59.933 47.826 0.00 0.00 29.66 3.79
333 334 3.699538 TGGTAGTAGATCACACGATGCTT 59.300 43.478 0.00 0.00 29.66 3.91
334 335 4.885325 TGGTAGTAGATCACACGATGCTTA 59.115 41.667 0.00 0.00 29.66 3.09
335 336 5.213675 GGTAGTAGATCACACGATGCTTAC 58.786 45.833 0.00 0.00 29.66 2.34
336 337 4.983671 AGTAGATCACACGATGCTTACA 57.016 40.909 0.00 0.00 29.66 2.41
337 338 4.926244 AGTAGATCACACGATGCTTACAG 58.074 43.478 0.00 0.00 29.66 2.74
338 339 2.544685 AGATCACACGATGCTTACAGC 58.455 47.619 0.00 0.00 42.82 4.40
339 340 1.594862 GATCACACGATGCTTACAGCC 59.405 52.381 0.00 0.00 41.51 4.85
340 341 0.320050 TCACACGATGCTTACAGCCA 59.680 50.000 0.00 0.00 41.51 4.75
341 342 1.066215 TCACACGATGCTTACAGCCAT 60.066 47.619 0.00 0.00 41.51 4.40
342 343 2.167487 TCACACGATGCTTACAGCCATA 59.833 45.455 0.00 0.00 41.51 2.74
343 344 2.285220 CACACGATGCTTACAGCCATAC 59.715 50.000 0.00 0.00 41.51 2.39
344 345 1.867233 CACGATGCTTACAGCCATACC 59.133 52.381 0.00 0.00 41.51 2.73
345 346 1.139989 CGATGCTTACAGCCATACCG 58.860 55.000 0.00 0.00 41.51 4.02
346 347 1.269569 CGATGCTTACAGCCATACCGA 60.270 52.381 0.00 0.00 41.51 4.69
347 348 2.610479 CGATGCTTACAGCCATACCGAT 60.610 50.000 0.00 0.00 41.51 4.18
348 349 2.526304 TGCTTACAGCCATACCGATC 57.474 50.000 0.00 0.00 41.51 3.69
349 350 2.039418 TGCTTACAGCCATACCGATCT 58.961 47.619 0.00 0.00 41.51 2.75
350 351 2.035961 TGCTTACAGCCATACCGATCTC 59.964 50.000 0.00 0.00 41.51 2.75
351 352 2.035961 GCTTACAGCCATACCGATCTCA 59.964 50.000 0.00 0.00 34.48 3.27
352 353 3.492656 GCTTACAGCCATACCGATCTCAA 60.493 47.826 0.00 0.00 34.48 3.02
353 354 4.693283 CTTACAGCCATACCGATCTCAAA 58.307 43.478 0.00 0.00 0.00 2.69
354 355 3.627395 ACAGCCATACCGATCTCAAAA 57.373 42.857 0.00 0.00 0.00 2.44
355 356 3.270877 ACAGCCATACCGATCTCAAAAC 58.729 45.455 0.00 0.00 0.00 2.43
356 357 3.055094 ACAGCCATACCGATCTCAAAACT 60.055 43.478 0.00 0.00 0.00 2.66
357 358 3.941483 CAGCCATACCGATCTCAAAACTT 59.059 43.478 0.00 0.00 0.00 2.66
358 359 5.116180 CAGCCATACCGATCTCAAAACTTA 58.884 41.667 0.00 0.00 0.00 2.24
359 360 5.584649 CAGCCATACCGATCTCAAAACTTAA 59.415 40.000 0.00 0.00 0.00 1.85
360 361 6.093495 CAGCCATACCGATCTCAAAACTTAAA 59.907 38.462 0.00 0.00 0.00 1.52
361 362 6.093633 AGCCATACCGATCTCAAAACTTAAAC 59.906 38.462 0.00 0.00 0.00 2.01
362 363 6.093633 GCCATACCGATCTCAAAACTTAAACT 59.906 38.462 0.00 0.00 0.00 2.66
363 364 7.279313 GCCATACCGATCTCAAAACTTAAACTA 59.721 37.037 0.00 0.00 0.00 2.24
364 365 9.326413 CCATACCGATCTCAAAACTTAAACTAT 57.674 33.333 0.00 0.00 0.00 2.12
367 368 8.480643 ACCGATCTCAAAACTTAAACTATCAG 57.519 34.615 0.00 0.00 0.00 2.90
368 369 7.064728 ACCGATCTCAAAACTTAAACTATCAGC 59.935 37.037 0.00 0.00 0.00 4.26
369 370 7.402640 CGATCTCAAAACTTAAACTATCAGCC 58.597 38.462 0.00 0.00 0.00 4.85
370 371 7.064609 CGATCTCAAAACTTAAACTATCAGCCA 59.935 37.037 0.00 0.00 0.00 4.75
371 372 7.435068 TCTCAAAACTTAAACTATCAGCCAC 57.565 36.000 0.00 0.00 0.00 5.01
372 373 6.147164 TCTCAAAACTTAAACTATCAGCCACG 59.853 38.462 0.00 0.00 0.00 4.94
373 374 5.992829 TCAAAACTTAAACTATCAGCCACGA 59.007 36.000 0.00 0.00 0.00 4.35
374 375 6.147164 TCAAAACTTAAACTATCAGCCACGAG 59.853 38.462 0.00 0.00 0.00 4.18
375 376 5.401531 AACTTAAACTATCAGCCACGAGA 57.598 39.130 0.00 0.00 0.00 4.04
376 377 5.401531 ACTTAAACTATCAGCCACGAGAA 57.598 39.130 0.00 0.00 0.00 2.87
377 378 5.411781 ACTTAAACTATCAGCCACGAGAAG 58.588 41.667 0.00 0.00 0.00 2.85
378 379 2.301577 AACTATCAGCCACGAGAAGC 57.698 50.000 0.00 0.00 0.00 3.86
380 381 1.211818 CTATCAGCCACGAGAAGCGC 61.212 60.000 0.00 0.00 46.04 5.92
381 382 2.629050 TATCAGCCACGAGAAGCGCC 62.629 60.000 2.29 0.00 46.04 6.53
383 384 4.749310 AGCCACGAGAAGCGCCAG 62.749 66.667 2.29 0.00 46.04 4.85
401 402 3.369381 GCTCGTGCTCCATACATGT 57.631 52.632 2.69 2.69 36.03 3.21
402 403 1.212616 GCTCGTGCTCCATACATGTC 58.787 55.000 0.00 0.00 36.03 3.06
403 404 1.481240 CTCGTGCTCCATACATGTCG 58.519 55.000 0.00 0.00 0.00 4.35
404 405 0.527600 TCGTGCTCCATACATGTCGC 60.528 55.000 0.00 0.00 0.00 5.19
405 406 0.805711 CGTGCTCCATACATGTCGCA 60.806 55.000 0.00 2.01 0.00 5.10
406 407 0.652592 GTGCTCCATACATGTCGCAC 59.347 55.000 0.00 11.03 41.39 5.34
407 408 0.805711 TGCTCCATACATGTCGCACG 60.806 55.000 0.00 0.00 0.00 5.34
408 409 1.927210 CTCCATACATGTCGCACGC 59.073 57.895 0.00 0.00 0.00 5.34
409 410 1.490693 CTCCATACATGTCGCACGCC 61.491 60.000 0.00 0.00 0.00 5.68
410 411 2.620459 CATACATGTCGCACGCCG 59.380 61.111 0.00 0.00 38.61 6.46
411 412 3.261951 ATACATGTCGCACGCCGC 61.262 61.111 0.00 0.00 36.73 6.53
412 413 3.998911 ATACATGTCGCACGCCGCA 62.999 57.895 0.00 0.00 42.60 5.69
468 469 2.501261 TCCTATCTACATCCACGGTCG 58.499 52.381 0.00 0.00 0.00 4.79
484 485 2.175621 TCGCCATTCTCATGCTGCG 61.176 57.895 0.00 0.00 40.47 5.18
509 520 1.676014 CGGACTCCACCACCTTGATTC 60.676 57.143 0.00 0.00 0.00 2.52
511 522 2.616510 GGACTCCACCACCTTGATTCAG 60.617 54.545 0.00 0.00 0.00 3.02
517 528 1.963515 ACCACCTTGATTCAGTTTGCC 59.036 47.619 0.00 0.00 0.00 4.52
543 554 2.192979 GGCCTCCATTGCCGATCA 59.807 61.111 0.00 0.00 39.48 2.92
549 560 0.462581 TCCATTGCCGATCAGCTCAC 60.463 55.000 2.00 0.00 0.00 3.51
550 561 0.745486 CCATTGCCGATCAGCTCACA 60.745 55.000 2.00 0.00 0.00 3.58
555 571 0.460811 GCCGATCAGCTCACATCACA 60.461 55.000 0.00 0.00 0.00 3.58
956 10789 1.599518 CACAAGGTACCCTGCGCAA 60.600 57.895 13.05 0.00 32.13 4.85
962 10795 1.202770 AGGTACCCTGCGCAATATTCC 60.203 52.381 13.05 11.80 29.57 3.01
973 10806 2.733552 CGCAATATTCCAGATCGTCCTG 59.266 50.000 0.00 0.00 0.00 3.86
979 10812 2.818132 CAGATCGTCCTGGGCTCC 59.182 66.667 0.00 0.00 0.00 4.70
980 10813 1.760086 CAGATCGTCCTGGGCTCCT 60.760 63.158 0.00 0.00 0.00 3.69
981 10814 1.760086 AGATCGTCCTGGGCTCCTG 60.760 63.158 0.00 0.00 0.00 3.86
1011 10844 2.188469 GCCTTTATGGGACCGCGA 59.812 61.111 8.23 0.00 36.00 5.87
1055 10888 2.404215 CACGACGTTGGAAGACTTCAT 58.596 47.619 16.85 0.00 0.00 2.57
1056 10889 2.800544 CACGACGTTGGAAGACTTCATT 59.199 45.455 16.85 0.00 0.00 2.57
1253 11089 4.154347 GGTGCTCGCCCTCCTCAG 62.154 72.222 0.00 0.00 0.00 3.35
1262 11098 0.978146 GCCCTCCTCAGCAACCTCTA 60.978 60.000 0.00 0.00 0.00 2.43
1279 11115 1.757118 TCTACCAGAAGCCTTCCATCG 59.243 52.381 0.00 0.00 0.00 3.84
1321 11160 2.202690 CGGACATCGGCGTTGCTA 60.203 61.111 17.21 0.00 34.75 3.49
1324 11163 1.702491 GGACATCGGCGTTGCTAACC 61.702 60.000 17.21 11.71 0.00 2.85
1356 11198 0.583438 CGGATATGTTTCGCTGGCTG 59.417 55.000 0.00 0.00 0.00 4.85
1365 11207 4.457496 CGCTGGCTGGACGACCAT 62.457 66.667 7.16 0.00 45.87 3.55
1714 11559 1.215647 GTGATGCTCCCGTTCGTCT 59.784 57.895 0.00 0.00 0.00 4.18
1716 11561 1.135199 GTGATGCTCCCGTTCGTCTTA 60.135 52.381 0.00 0.00 0.00 2.10
1884 11729 1.370900 CAACGCCAAGAAGCTGCAC 60.371 57.895 1.02 0.00 0.00 4.57
1915 11760 1.449353 GATCAGGAGCGGCAGGAAT 59.551 57.895 1.45 0.00 0.00 3.01
1948 11793 1.070758 ACGTTGTCAAGCACCTGAGAT 59.929 47.619 0.00 0.00 0.00 2.75
1961 11806 4.437930 GCACCTGAGATGTTACAAAGATGC 60.438 45.833 0.00 0.00 0.00 3.91
1965 11810 6.765036 ACCTGAGATGTTACAAAGATGCATAG 59.235 38.462 0.00 0.00 0.00 2.23
1978 13074 4.122776 AGATGCATAGTTTAAGTGGCTCG 58.877 43.478 0.00 0.00 0.00 5.03
1991 13087 2.260869 GGCTCGGTGCATTGTGTGT 61.261 57.895 4.30 0.00 45.15 3.72
2009 13105 8.994429 TTGTGTGTTGTGAAATTAATTGAACT 57.006 26.923 0.39 0.00 0.00 3.01
2022 13118 9.581099 AAATTAATTGAACTCGTTTTCTTGTGT 57.419 25.926 0.39 0.00 0.00 3.72
2086 13182 6.899393 TTGTCTTCAATGTCCAGCTTAAAT 57.101 33.333 0.00 0.00 0.00 1.40
2087 13183 6.899393 TGTCTTCAATGTCCAGCTTAAATT 57.101 33.333 0.00 0.00 0.00 1.82
2088 13184 7.288810 TGTCTTCAATGTCCAGCTTAAATTT 57.711 32.000 0.00 0.00 0.00 1.82
2089 13185 7.725251 TGTCTTCAATGTCCAGCTTAAATTTT 58.275 30.769 0.00 0.00 0.00 1.82
2120 13218 8.344831 TCAAGAAAATACACATTGAGTTCACAG 58.655 33.333 0.00 0.00 0.00 3.66
2129 13227 7.995289 ACACATTGAGTTCACAGTCATAAAAA 58.005 30.769 0.00 0.00 32.07 1.94
2315 13414 7.800155 AAAAAGACTCTCAGGAAGAAAAGAG 57.200 36.000 0.00 0.00 40.84 2.85
2316 13415 6.739331 AAAGACTCTCAGGAAGAAAAGAGA 57.261 37.500 5.31 0.00 38.85 3.10
2322 13421 6.588719 TCTCAGGAAGAAAAGAGAGAGAAG 57.411 41.667 0.00 0.00 32.57 2.85
2323 13422 6.074648 TCTCAGGAAGAAAAGAGAGAGAAGT 58.925 40.000 0.00 0.00 32.57 3.01
2324 13423 6.015519 TCTCAGGAAGAAAAGAGAGAGAAGTG 60.016 42.308 0.00 0.00 32.57 3.16
2325 13424 5.011533 TCAGGAAGAAAAGAGAGAGAAGTGG 59.988 44.000 0.00 0.00 0.00 4.00
2326 13425 5.011533 CAGGAAGAAAAGAGAGAGAAGTGGA 59.988 44.000 0.00 0.00 0.00 4.02
2327 13426 5.245977 AGGAAGAAAAGAGAGAGAAGTGGAG 59.754 44.000 0.00 0.00 0.00 3.86
2328 13427 5.011635 GGAAGAAAAGAGAGAGAAGTGGAGT 59.988 44.000 0.00 0.00 0.00 3.85
2329 13428 6.209788 GGAAGAAAAGAGAGAGAAGTGGAGTA 59.790 42.308 0.00 0.00 0.00 2.59
2330 13429 7.256012 GGAAGAAAAGAGAGAGAAGTGGAGTAA 60.256 40.741 0.00 0.00 0.00 2.24
2331 13430 7.604657 AGAAAAGAGAGAGAAGTGGAGTAAA 57.395 36.000 0.00 0.00 0.00 2.01
2332 13431 8.024145 AGAAAAGAGAGAGAAGTGGAGTAAAA 57.976 34.615 0.00 0.00 0.00 1.52
2333 13432 8.655901 AGAAAAGAGAGAGAAGTGGAGTAAAAT 58.344 33.333 0.00 0.00 0.00 1.82
2334 13433 8.614469 AAAAGAGAGAGAAGTGGAGTAAAATG 57.386 34.615 0.00 0.00 0.00 2.32
2335 13434 6.293004 AGAGAGAGAAGTGGAGTAAAATGG 57.707 41.667 0.00 0.00 0.00 3.16
2336 13435 6.019748 AGAGAGAGAAGTGGAGTAAAATGGA 58.980 40.000 0.00 0.00 0.00 3.41
2337 13436 6.671779 AGAGAGAGAAGTGGAGTAAAATGGAT 59.328 38.462 0.00 0.00 0.00 3.41
2338 13437 7.181845 AGAGAGAGAAGTGGAGTAAAATGGATT 59.818 37.037 0.00 0.00 0.00 3.01
2339 13438 7.334858 AGAGAGAAGTGGAGTAAAATGGATTC 58.665 38.462 0.00 0.00 0.00 2.52
2340 13439 7.020827 AGAGAAGTGGAGTAAAATGGATTCA 57.979 36.000 0.00 0.00 0.00 2.57
2341 13440 7.461749 AGAGAAGTGGAGTAAAATGGATTCAA 58.538 34.615 0.00 0.00 0.00 2.69
2342 13441 7.944554 AGAGAAGTGGAGTAAAATGGATTCAAA 59.055 33.333 0.00 0.00 0.00 2.69
2343 13442 8.655935 AGAAGTGGAGTAAAATGGATTCAAAT 57.344 30.769 0.00 0.00 0.00 2.32
2344 13443 8.526147 AGAAGTGGAGTAAAATGGATTCAAATG 58.474 33.333 0.00 0.00 0.00 2.32
2345 13444 6.633856 AGTGGAGTAAAATGGATTCAAATGC 58.366 36.000 0.00 0.00 0.00 3.56
2346 13445 5.812127 GTGGAGTAAAATGGATTCAAATGCC 59.188 40.000 0.00 0.00 0.00 4.40
2347 13446 5.043248 GGAGTAAAATGGATTCAAATGCCG 58.957 41.667 0.00 0.00 0.00 5.69
2348 13447 5.009854 AGTAAAATGGATTCAAATGCCGG 57.990 39.130 0.00 0.00 0.00 6.13
2349 13448 2.985957 AAATGGATTCAAATGCCGGG 57.014 45.000 2.18 0.00 0.00 5.73
2350 13449 2.157640 AATGGATTCAAATGCCGGGA 57.842 45.000 2.18 0.00 0.00 5.14
2351 13450 1.696063 ATGGATTCAAATGCCGGGAG 58.304 50.000 2.18 0.00 0.00 4.30
2689 13849 2.263077 GATCTCAACAGCAACGTCGAT 58.737 47.619 0.00 0.00 0.00 3.59
2758 13918 2.370445 CGGTCATGGCCTTCCTCCT 61.370 63.158 15.80 0.00 0.00 3.69
2759 13919 1.529309 GGTCATGGCCTTCCTCCTC 59.471 63.158 9.76 0.00 0.00 3.71
2761 13921 1.692762 GGTCATGGCCTTCCTCCTCTA 60.693 57.143 9.76 0.00 0.00 2.43
2762 13922 1.414550 GTCATGGCCTTCCTCCTCTAC 59.585 57.143 3.32 0.00 0.00 2.59
2763 13923 0.761802 CATGGCCTTCCTCCTCTACC 59.238 60.000 3.32 0.00 0.00 3.18
2912 17063 8.937207 TTAATTAAACAAACAGGGCCTAAGTA 57.063 30.769 5.28 0.00 0.00 2.24
2913 17064 6.829229 ATTAAACAAACAGGGCCTAAGTAC 57.171 37.500 5.28 0.00 0.00 2.73
2914 17065 4.448720 AAACAAACAGGGCCTAAGTACT 57.551 40.909 5.28 0.00 0.00 2.73
2915 17066 4.448720 AACAAACAGGGCCTAAGTACTT 57.551 40.909 13.68 13.68 0.00 2.24
2916 17067 4.017177 ACAAACAGGGCCTAAGTACTTC 57.983 45.455 12.39 0.00 0.00 3.01
2917 17068 3.393278 ACAAACAGGGCCTAAGTACTTCA 59.607 43.478 12.39 0.00 0.00 3.02
2918 17069 4.141344 ACAAACAGGGCCTAAGTACTTCAA 60.141 41.667 12.39 0.00 0.00 2.69
2919 17070 4.717279 AACAGGGCCTAAGTACTTCAAA 57.283 40.909 12.39 0.00 0.00 2.69
2920 17071 4.717279 ACAGGGCCTAAGTACTTCAAAA 57.283 40.909 12.39 0.00 0.00 2.44
2921 17072 5.056553 ACAGGGCCTAAGTACTTCAAAAA 57.943 39.130 12.39 0.00 0.00 1.94
2952 17103 8.298140 AGATACATTTAAGACGTATCAGCTACC 58.702 37.037 16.77 0.00 42.52 3.18
2953 17104 5.279384 ACATTTAAGACGTATCAGCTACCG 58.721 41.667 0.00 0.00 0.00 4.02
2954 17105 3.976793 TTAAGACGTATCAGCTACCGG 57.023 47.619 0.00 0.00 0.00 5.28
2955 17106 1.760192 AAGACGTATCAGCTACCGGT 58.240 50.000 13.98 13.98 0.00 5.28
2956 17107 1.760192 AGACGTATCAGCTACCGGTT 58.240 50.000 15.04 0.00 0.00 4.44
2957 17108 1.404391 AGACGTATCAGCTACCGGTTG 59.596 52.381 15.04 13.30 0.00 3.77
2958 17109 0.458669 ACGTATCAGCTACCGGTTGG 59.541 55.000 15.04 7.76 42.84 3.77
2959 17110 0.742505 CGTATCAGCTACCGGTTGGA 59.257 55.000 15.04 4.74 39.21 3.53
2960 17111 1.269102 CGTATCAGCTACCGGTTGGAG 60.269 57.143 15.04 5.19 39.21 3.86
2961 17112 1.068741 GTATCAGCTACCGGTTGGAGG 59.931 57.143 15.04 0.00 39.21 4.30
2962 17113 1.338136 ATCAGCTACCGGTTGGAGGG 61.338 60.000 15.04 0.00 39.21 4.30
2963 17114 1.987855 CAGCTACCGGTTGGAGGGA 60.988 63.158 15.04 0.00 39.21 4.20
2964 17115 1.988406 AGCTACCGGTTGGAGGGAC 60.988 63.158 15.04 0.00 39.21 4.46
2965 17116 3.027675 GCTACCGGTTGGAGGGACC 62.028 68.421 15.04 0.00 39.21 4.46
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.135333 GACCCCGTTGCAACTTTTTCA 59.865 47.619 26.09 0.00 0.00 2.69
1 2 1.135333 TGACCCCGTTGCAACTTTTTC 59.865 47.619 26.09 16.91 0.00 2.29
2 3 1.187087 TGACCCCGTTGCAACTTTTT 58.813 45.000 26.09 8.98 0.00 1.94
3 4 1.134936 GTTGACCCCGTTGCAACTTTT 60.135 47.619 26.09 8.62 38.96 2.27
4 5 0.458260 GTTGACCCCGTTGCAACTTT 59.542 50.000 26.09 8.27 38.96 2.66
5 6 1.720694 CGTTGACCCCGTTGCAACTT 61.721 55.000 26.09 8.62 39.66 2.66
6 7 2.184167 CGTTGACCCCGTTGCAACT 61.184 57.895 26.09 8.43 39.66 3.16
7 8 2.330041 CGTTGACCCCGTTGCAAC 59.670 61.111 19.89 19.89 38.73 4.17
8 9 2.902846 CCGTTGACCCCGTTGCAA 60.903 61.111 0.00 0.00 0.00 4.08
9 10 3.862991 TCCGTTGACCCCGTTGCA 61.863 61.111 0.00 0.00 0.00 4.08
10 11 3.351416 GTCCGTTGACCCCGTTGC 61.351 66.667 0.00 0.00 35.34 4.17
11 12 0.816421 AAAGTCCGTTGACCCCGTTG 60.816 55.000 0.00 0.00 42.81 4.10
12 13 0.107066 AAAAGTCCGTTGACCCCGTT 60.107 50.000 0.00 0.00 42.81 4.44
13 14 0.816421 CAAAAGTCCGTTGACCCCGT 60.816 55.000 0.00 0.00 42.81 5.28
14 15 0.816421 ACAAAAGTCCGTTGACCCCG 60.816 55.000 0.00 0.00 42.81 5.73
15 16 1.395635 AACAAAAGTCCGTTGACCCC 58.604 50.000 0.00 0.00 42.81 4.95
16 17 4.841443 AATAACAAAAGTCCGTTGACCC 57.159 40.909 0.00 0.00 42.81 4.46
17 18 5.051307 GCAAAATAACAAAAGTCCGTTGACC 60.051 40.000 0.00 0.00 42.81 4.02
18 19 5.331235 CGCAAAATAACAAAAGTCCGTTGAC 60.331 40.000 0.00 0.00 42.09 3.18
19 20 4.735822 CGCAAAATAACAAAAGTCCGTTGA 59.264 37.500 0.00 0.00 0.00 3.18
20 21 4.735822 TCGCAAAATAACAAAAGTCCGTTG 59.264 37.500 0.00 0.00 0.00 4.10
21 22 4.922719 TCGCAAAATAACAAAAGTCCGTT 58.077 34.783 0.00 0.00 0.00 4.44
22 23 4.555348 TCGCAAAATAACAAAAGTCCGT 57.445 36.364 0.00 0.00 0.00 4.69
23 24 6.446659 AAATCGCAAAATAACAAAAGTCCG 57.553 33.333 0.00 0.00 0.00 4.79
24 25 7.792048 GTCAAAATCGCAAAATAACAAAAGTCC 59.208 33.333 0.00 0.00 0.00 3.85
25 26 7.522555 CGTCAAAATCGCAAAATAACAAAAGTC 59.477 33.333 0.00 0.00 0.00 3.01
26 27 7.334009 CGTCAAAATCGCAAAATAACAAAAGT 58.666 30.769 0.00 0.00 0.00 2.66
27 28 6.785164 CCGTCAAAATCGCAAAATAACAAAAG 59.215 34.615 0.00 0.00 0.00 2.27
28 29 6.641062 CCGTCAAAATCGCAAAATAACAAAA 58.359 32.000 0.00 0.00 0.00 2.44
29 30 5.332656 GCCGTCAAAATCGCAAAATAACAAA 60.333 36.000 0.00 0.00 0.00 2.83
30 31 4.149046 GCCGTCAAAATCGCAAAATAACAA 59.851 37.500 0.00 0.00 0.00 2.83
31 32 3.670991 GCCGTCAAAATCGCAAAATAACA 59.329 39.130 0.00 0.00 0.00 2.41
32 33 3.241208 CGCCGTCAAAATCGCAAAATAAC 60.241 43.478 0.00 0.00 0.00 1.89
33 34 2.911723 CGCCGTCAAAATCGCAAAATAA 59.088 40.909 0.00 0.00 0.00 1.40
34 35 2.159824 TCGCCGTCAAAATCGCAAAATA 59.840 40.909 0.00 0.00 0.00 1.40
35 36 1.068885 TCGCCGTCAAAATCGCAAAAT 60.069 42.857 0.00 0.00 0.00 1.82
36 37 0.308068 TCGCCGTCAAAATCGCAAAA 59.692 45.000 0.00 0.00 0.00 2.44
37 38 0.384974 GTCGCCGTCAAAATCGCAAA 60.385 50.000 0.00 0.00 0.00 3.68
38 39 1.205568 GTCGCCGTCAAAATCGCAA 59.794 52.632 0.00 0.00 0.00 4.85
39 40 2.857448 GTCGCCGTCAAAATCGCA 59.143 55.556 0.00 0.00 0.00 5.10
40 41 2.275812 CGTCGCCGTCAAAATCGC 60.276 61.111 0.00 0.00 0.00 4.58
41 42 1.340465 CTCGTCGCCGTCAAAATCG 59.660 57.895 0.00 0.00 35.01 3.34
42 43 1.058903 GCTCGTCGCCGTCAAAATC 59.941 57.895 0.00 0.00 35.01 2.17
43 44 0.949105 AAGCTCGTCGCCGTCAAAAT 60.949 50.000 0.00 0.00 40.39 1.82
44 45 1.155424 AAAGCTCGTCGCCGTCAAAA 61.155 50.000 0.00 0.00 40.39 2.44
45 46 1.593209 AAAGCTCGTCGCCGTCAAA 60.593 52.632 0.00 0.00 40.39 2.69
46 47 2.028484 AAAGCTCGTCGCCGTCAA 59.972 55.556 0.00 0.00 40.39 3.18
47 48 2.733218 CAAAGCTCGTCGCCGTCA 60.733 61.111 0.00 0.00 40.39 4.35
48 49 2.430244 TCAAAGCTCGTCGCCGTC 60.430 61.111 0.00 0.00 40.39 4.79
49 50 2.733593 GTCAAAGCTCGTCGCCGT 60.734 61.111 0.00 0.00 40.39 5.68
50 51 3.827784 CGTCAAAGCTCGTCGCCG 61.828 66.667 0.00 0.00 40.39 6.46
51 52 3.479269 CCGTCAAAGCTCGTCGCC 61.479 66.667 0.00 0.00 40.39 5.54
52 53 4.135493 GCCGTCAAAGCTCGTCGC 62.135 66.667 0.00 0.00 39.57 5.19
53 54 3.827784 CGCCGTCAAAGCTCGTCG 61.828 66.667 0.00 0.00 0.00 5.12
54 55 2.430244 TCGCCGTCAAAGCTCGTC 60.430 61.111 0.00 0.00 0.00 4.20
55 56 2.430921 CTCGCCGTCAAAGCTCGT 60.431 61.111 0.00 0.00 0.00 4.18
56 57 3.843240 GCTCGCCGTCAAAGCTCG 61.843 66.667 0.00 0.00 33.23 5.03
57 58 3.843240 CGCTCGCCGTCAAAGCTC 61.843 66.667 0.00 0.00 33.83 4.09
75 76 3.916438 TTACTGCCCTCGCCCCTGA 62.916 63.158 0.00 0.00 0.00 3.86
76 77 3.391665 CTTACTGCCCTCGCCCCTG 62.392 68.421 0.00 0.00 0.00 4.45
77 78 3.083997 CTTACTGCCCTCGCCCCT 61.084 66.667 0.00 0.00 0.00 4.79
78 79 4.176752 CCTTACTGCCCTCGCCCC 62.177 72.222 0.00 0.00 0.00 5.80
79 80 4.176752 CCCTTACTGCCCTCGCCC 62.177 72.222 0.00 0.00 0.00 6.13
80 81 4.858680 GCCCTTACTGCCCTCGCC 62.859 72.222 0.00 0.00 0.00 5.54
82 83 4.530857 CCGCCCTTACTGCCCTCG 62.531 72.222 0.00 0.00 0.00 4.63
83 84 4.858680 GCCGCCCTTACTGCCCTC 62.859 72.222 0.00 0.00 0.00 4.30
108 109 4.373116 TCCCTCGTGTCAAGCGGC 62.373 66.667 0.00 0.00 0.00 6.53
109 110 2.125912 CTCCCTCGTGTCAAGCGG 60.126 66.667 0.00 0.00 0.00 5.52
110 111 1.734477 CACTCCCTCGTGTCAAGCG 60.734 63.158 0.00 0.00 0.00 4.68
111 112 1.374758 CCACTCCCTCGTGTCAAGC 60.375 63.158 0.00 0.00 33.07 4.01
112 113 0.679505 TTCCACTCCCTCGTGTCAAG 59.320 55.000 0.00 0.00 33.07 3.02
113 114 0.679505 CTTCCACTCCCTCGTGTCAA 59.320 55.000 0.00 0.00 33.07 3.18
114 115 1.185618 CCTTCCACTCCCTCGTGTCA 61.186 60.000 0.00 0.00 33.07 3.58
115 116 1.592223 CCTTCCACTCCCTCGTGTC 59.408 63.158 0.00 0.00 33.07 3.67
116 117 2.584391 GCCTTCCACTCCCTCGTGT 61.584 63.158 0.00 0.00 33.07 4.49
117 118 2.266055 GCCTTCCACTCCCTCGTG 59.734 66.667 0.00 0.00 34.71 4.35
118 119 3.382832 CGCCTTCCACTCCCTCGT 61.383 66.667 0.00 0.00 0.00 4.18
119 120 4.821589 GCGCCTTCCACTCCCTCG 62.822 72.222 0.00 0.00 0.00 4.63
120 121 4.821589 CGCGCCTTCCACTCCCTC 62.822 72.222 0.00 0.00 0.00 4.30
138 139 4.742201 CTCCCCCGTGTCACGCTG 62.742 72.222 20.01 12.33 40.91 5.18
139 140 4.988716 TCTCCCCCGTGTCACGCT 62.989 66.667 20.01 0.00 40.91 5.07
140 141 4.436998 CTCTCCCCCGTGTCACGC 62.437 72.222 20.01 0.00 40.91 5.34
141 142 2.214181 CTTCTCTCCCCCGTGTCACG 62.214 65.000 18.54 18.54 42.11 4.35
142 143 1.592223 CTTCTCTCCCCCGTGTCAC 59.408 63.158 0.00 0.00 0.00 3.67
143 144 1.609501 CCTTCTCTCCCCCGTGTCA 60.610 63.158 0.00 0.00 0.00 3.58
144 145 2.359967 CCCTTCTCTCCCCCGTGTC 61.360 68.421 0.00 0.00 0.00 3.67
145 146 2.284699 CCCTTCTCTCCCCCGTGT 60.285 66.667 0.00 0.00 0.00 4.49
146 147 3.787001 GCCCTTCTCTCCCCCGTG 61.787 72.222 0.00 0.00 0.00 4.94
167 168 4.790962 AGAGCACAGGCCATGGCG 62.791 66.667 29.90 19.63 42.56 5.69
168 169 2.362120 AAGAGCACAGGCCATGGC 60.362 61.111 29.47 29.47 42.56 4.40
169 170 1.303888 ACAAGAGCACAGGCCATGG 60.304 57.895 7.63 7.63 42.56 3.66
170 171 0.892358 ACACAAGAGCACAGGCCATG 60.892 55.000 5.01 3.61 42.56 3.66
171 172 0.607489 GACACAAGAGCACAGGCCAT 60.607 55.000 5.01 0.00 42.56 4.40
172 173 1.227943 GACACAAGAGCACAGGCCA 60.228 57.895 5.01 0.00 42.56 5.36
173 174 0.536006 AAGACACAAGAGCACAGGCC 60.536 55.000 0.00 0.00 42.56 5.19
174 175 0.871057 GAAGACACAAGAGCACAGGC 59.129 55.000 0.00 0.00 41.61 4.85
175 176 2.141517 CTGAAGACACAAGAGCACAGG 58.858 52.381 0.00 0.00 0.00 4.00
176 177 3.103447 TCTGAAGACACAAGAGCACAG 57.897 47.619 0.00 0.00 0.00 3.66
177 178 3.396560 CATCTGAAGACACAAGAGCACA 58.603 45.455 0.00 0.00 0.00 4.57
178 179 2.159234 GCATCTGAAGACACAAGAGCAC 59.841 50.000 0.00 0.00 0.00 4.40
179 180 2.420642 GCATCTGAAGACACAAGAGCA 58.579 47.619 0.00 0.00 0.00 4.26
180 181 1.392853 CGCATCTGAAGACACAAGAGC 59.607 52.381 0.00 0.00 0.00 4.09
181 182 2.951726 TCGCATCTGAAGACACAAGAG 58.048 47.619 0.00 0.00 0.00 2.85
182 183 3.320626 CTTCGCATCTGAAGACACAAGA 58.679 45.455 0.00 0.00 46.64 3.02
183 184 3.719083 CTTCGCATCTGAAGACACAAG 57.281 47.619 0.00 0.00 46.64 3.16
190 191 2.548875 CCCTTCTCTTCGCATCTGAAG 58.451 52.381 0.00 0.00 45.37 3.02
191 192 1.208052 CCCCTTCTCTTCGCATCTGAA 59.792 52.381 0.00 0.00 0.00 3.02
192 193 0.826715 CCCCTTCTCTTCGCATCTGA 59.173 55.000 0.00 0.00 0.00 3.27
193 194 0.539051 ACCCCTTCTCTTCGCATCTG 59.461 55.000 0.00 0.00 0.00 2.90
194 195 0.539051 CACCCCTTCTCTTCGCATCT 59.461 55.000 0.00 0.00 0.00 2.90
195 196 0.537188 TCACCCCTTCTCTTCGCATC 59.463 55.000 0.00 0.00 0.00 3.91
196 197 1.207791 ATCACCCCTTCTCTTCGCAT 58.792 50.000 0.00 0.00 0.00 4.73
197 198 1.860641 TATCACCCCTTCTCTTCGCA 58.139 50.000 0.00 0.00 0.00 5.10
198 199 2.431057 TCTTATCACCCCTTCTCTTCGC 59.569 50.000 0.00 0.00 0.00 4.70
199 200 3.489398 CGTCTTATCACCCCTTCTCTTCG 60.489 52.174 0.00 0.00 0.00 3.79
200 201 3.700038 TCGTCTTATCACCCCTTCTCTTC 59.300 47.826 0.00 0.00 0.00 2.87
201 202 3.709587 TCGTCTTATCACCCCTTCTCTT 58.290 45.455 0.00 0.00 0.00 2.85
202 203 3.383698 TCGTCTTATCACCCCTTCTCT 57.616 47.619 0.00 0.00 0.00 3.10
203 204 3.243907 CCATCGTCTTATCACCCCTTCTC 60.244 52.174 0.00 0.00 0.00 2.87
204 205 2.700897 CCATCGTCTTATCACCCCTTCT 59.299 50.000 0.00 0.00 0.00 2.85
205 206 2.698797 TCCATCGTCTTATCACCCCTTC 59.301 50.000 0.00 0.00 0.00 3.46
206 207 2.700897 CTCCATCGTCTTATCACCCCTT 59.299 50.000 0.00 0.00 0.00 3.95
207 208 2.091278 TCTCCATCGTCTTATCACCCCT 60.091 50.000 0.00 0.00 0.00 4.79
208 209 2.317040 TCTCCATCGTCTTATCACCCC 58.683 52.381 0.00 0.00 0.00 4.95
209 210 3.718815 GTTCTCCATCGTCTTATCACCC 58.281 50.000 0.00 0.00 0.00 4.61
210 211 3.066342 TCGTTCTCCATCGTCTTATCACC 59.934 47.826 0.00 0.00 0.00 4.02
211 212 4.288670 TCGTTCTCCATCGTCTTATCAC 57.711 45.455 0.00 0.00 0.00 3.06
212 213 4.733815 GCTTCGTTCTCCATCGTCTTATCA 60.734 45.833 0.00 0.00 0.00 2.15
213 214 3.731717 GCTTCGTTCTCCATCGTCTTATC 59.268 47.826 0.00 0.00 0.00 1.75
214 215 3.130516 TGCTTCGTTCTCCATCGTCTTAT 59.869 43.478 0.00 0.00 0.00 1.73
215 216 2.490509 TGCTTCGTTCTCCATCGTCTTA 59.509 45.455 0.00 0.00 0.00 2.10
216 217 1.272490 TGCTTCGTTCTCCATCGTCTT 59.728 47.619 0.00 0.00 0.00 3.01
217 218 0.888619 TGCTTCGTTCTCCATCGTCT 59.111 50.000 0.00 0.00 0.00 4.18
218 219 1.855360 GATGCTTCGTTCTCCATCGTC 59.145 52.381 0.00 0.00 0.00 4.20
219 220 1.478510 AGATGCTTCGTTCTCCATCGT 59.521 47.619 0.00 0.00 39.16 3.73
220 221 2.215907 AGATGCTTCGTTCTCCATCG 57.784 50.000 0.00 0.00 39.16 3.84
221 222 3.487574 CGTTAGATGCTTCGTTCTCCATC 59.512 47.826 0.00 0.00 35.49 3.51
222 223 3.448686 CGTTAGATGCTTCGTTCTCCAT 58.551 45.455 0.00 0.00 0.00 3.41
223 224 2.416836 CCGTTAGATGCTTCGTTCTCCA 60.417 50.000 0.00 0.00 0.00 3.86
224 225 2.194271 CCGTTAGATGCTTCGTTCTCC 58.806 52.381 0.00 0.00 0.00 3.71
225 226 1.588861 GCCGTTAGATGCTTCGTTCTC 59.411 52.381 0.00 0.00 0.00 2.87
226 227 1.641577 GCCGTTAGATGCTTCGTTCT 58.358 50.000 0.00 0.00 0.00 3.01
227 228 0.651031 GGCCGTTAGATGCTTCGTTC 59.349 55.000 0.00 0.00 0.00 3.95
228 229 0.036765 TGGCCGTTAGATGCTTCGTT 60.037 50.000 0.00 0.00 0.00 3.85
229 230 0.739813 GTGGCCGTTAGATGCTTCGT 60.740 55.000 0.00 0.00 0.00 3.85
230 231 1.752501 CGTGGCCGTTAGATGCTTCG 61.753 60.000 0.00 0.00 0.00 3.79
231 232 2.006772 CGTGGCCGTTAGATGCTTC 58.993 57.895 0.00 0.00 0.00 3.86
232 233 2.106683 GCGTGGCCGTTAGATGCTT 61.107 57.895 0.00 0.00 36.15 3.91
233 234 2.511600 GCGTGGCCGTTAGATGCT 60.512 61.111 0.00 0.00 36.15 3.79
234 235 3.925238 CGCGTGGCCGTTAGATGC 61.925 66.667 0.00 0.00 36.15 3.91
235 236 3.925238 GCGCGTGGCCGTTAGATG 61.925 66.667 8.43 0.00 36.15 2.90
249 250 3.898640 GACCGAATCGTCACGCGC 61.899 66.667 5.73 0.00 41.07 6.86
250 251 2.497092 CTGACCGAATCGTCACGCG 61.497 63.158 3.53 3.53 37.85 6.01
251 252 1.403972 GACTGACCGAATCGTCACGC 61.404 60.000 0.82 0.00 37.85 5.34
252 253 0.797249 GGACTGACCGAATCGTCACG 60.797 60.000 0.82 0.00 37.85 4.35
253 254 0.242825 TGGACTGACCGAATCGTCAC 59.757 55.000 0.82 0.00 42.61 3.67
254 255 1.134367 GATGGACTGACCGAATCGTCA 59.866 52.381 0.82 4.96 42.61 4.35
255 256 1.841450 GATGGACTGACCGAATCGTC 58.159 55.000 0.82 0.17 42.61 4.20
256 257 0.100682 CGATGGACTGACCGAATCGT 59.899 55.000 0.82 0.00 38.74 3.73
257 258 0.595053 CCGATGGACTGACCGAATCG 60.595 60.000 10.39 10.39 41.32 3.34
258 259 0.876342 GCCGATGGACTGACCGAATC 60.876 60.000 0.00 0.00 42.61 2.52
259 260 1.144057 GCCGATGGACTGACCGAAT 59.856 57.895 0.00 0.00 42.61 3.34
260 261 2.279810 TGCCGATGGACTGACCGAA 61.280 57.895 0.00 0.00 42.61 4.30
261 262 2.678580 TGCCGATGGACTGACCGA 60.679 61.111 0.00 0.00 42.61 4.69
262 263 2.509336 GTGCCGATGGACTGACCG 60.509 66.667 0.00 0.00 42.61 4.79
263 264 1.327690 TAGGTGCCGATGGACTGACC 61.328 60.000 0.00 0.00 39.54 4.02
264 265 0.753262 ATAGGTGCCGATGGACTGAC 59.247 55.000 0.00 0.00 0.00 3.51
265 266 1.040646 GATAGGTGCCGATGGACTGA 58.959 55.000 0.00 0.00 0.00 3.41
266 267 0.752658 TGATAGGTGCCGATGGACTG 59.247 55.000 0.00 0.00 0.00 3.51
267 268 0.753262 GTGATAGGTGCCGATGGACT 59.247 55.000 0.00 0.00 0.00 3.85
268 269 0.753262 AGTGATAGGTGCCGATGGAC 59.247 55.000 0.00 0.00 0.00 4.02
269 270 0.752658 CAGTGATAGGTGCCGATGGA 59.247 55.000 0.00 0.00 0.00 3.41
270 271 0.250038 CCAGTGATAGGTGCCGATGG 60.250 60.000 0.00 0.00 0.00 3.51
271 272 0.465705 ACCAGTGATAGGTGCCGATG 59.534 55.000 0.00 0.00 38.13 3.84
272 273 0.753262 GACCAGTGATAGGTGCCGAT 59.247 55.000 0.00 0.00 40.09 4.18
273 274 0.613572 TGACCAGTGATAGGTGCCGA 60.614 55.000 0.00 0.00 40.09 5.54
274 275 0.249120 TTGACCAGTGATAGGTGCCG 59.751 55.000 0.00 0.00 40.09 5.69
275 276 2.717639 ATTGACCAGTGATAGGTGCC 57.282 50.000 0.00 0.00 40.09 5.01
276 277 4.009675 TGAAATTGACCAGTGATAGGTGC 58.990 43.478 0.00 0.00 40.09 5.01
277 278 6.573664 TTTGAAATTGACCAGTGATAGGTG 57.426 37.500 0.00 0.00 40.09 4.00
278 279 6.153340 CCATTTGAAATTGACCAGTGATAGGT 59.847 38.462 0.00 0.00 43.46 3.08
279 280 6.153340 ACCATTTGAAATTGACCAGTGATAGG 59.847 38.462 0.00 0.00 0.00 2.57
280 281 7.161773 ACCATTTGAAATTGACCAGTGATAG 57.838 36.000 0.00 0.00 0.00 2.08
281 282 7.015098 ACAACCATTTGAAATTGACCAGTGATA 59.985 33.333 0.00 0.00 36.48 2.15
282 283 6.183360 ACAACCATTTGAAATTGACCAGTGAT 60.183 34.615 0.00 0.00 36.48 3.06
283 284 5.128499 ACAACCATTTGAAATTGACCAGTGA 59.872 36.000 0.00 0.00 36.48 3.41
284 285 5.358922 ACAACCATTTGAAATTGACCAGTG 58.641 37.500 0.00 0.00 36.48 3.66
285 286 5.612725 ACAACCATTTGAAATTGACCAGT 57.387 34.783 0.00 0.00 36.48 4.00
286 287 7.169645 CACTAACAACCATTTGAAATTGACCAG 59.830 37.037 0.00 0.00 36.48 4.00
287 288 6.983307 CACTAACAACCATTTGAAATTGACCA 59.017 34.615 0.00 0.00 36.48 4.02
288 289 6.423604 CCACTAACAACCATTTGAAATTGACC 59.576 38.462 0.00 0.00 36.48 4.02
289 290 6.983890 ACCACTAACAACCATTTGAAATTGAC 59.016 34.615 0.00 0.00 36.48 3.18
290 291 7.118496 ACCACTAACAACCATTTGAAATTGA 57.882 32.000 0.00 0.00 36.48 2.57
291 292 8.141268 ACTACCACTAACAACCATTTGAAATTG 58.859 33.333 0.00 0.00 36.48 2.32
292 293 8.245195 ACTACCACTAACAACCATTTGAAATT 57.755 30.769 0.00 0.00 36.48 1.82
293 294 7.833285 ACTACCACTAACAACCATTTGAAAT 57.167 32.000 0.00 0.00 36.48 2.17
294 295 8.212312 TCTACTACCACTAACAACCATTTGAAA 58.788 33.333 0.00 0.00 36.48 2.69
295 296 7.737869 TCTACTACCACTAACAACCATTTGAA 58.262 34.615 0.00 0.00 36.48 2.69
296 297 7.305813 TCTACTACCACTAACAACCATTTGA 57.694 36.000 0.00 0.00 36.48 2.69
297 298 7.822334 TGATCTACTACCACTAACAACCATTTG 59.178 37.037 0.00 0.00 38.83 2.32
298 299 7.822822 GTGATCTACTACCACTAACAACCATTT 59.177 37.037 0.00 0.00 0.00 2.32
299 300 7.038587 TGTGATCTACTACCACTAACAACCATT 60.039 37.037 0.00 0.00 0.00 3.16
300 301 6.439375 TGTGATCTACTACCACTAACAACCAT 59.561 38.462 0.00 0.00 0.00 3.55
301 302 5.776208 TGTGATCTACTACCACTAACAACCA 59.224 40.000 0.00 0.00 0.00 3.67
302 303 6.098017 GTGTGATCTACTACCACTAACAACC 58.902 44.000 0.00 0.00 0.00 3.77
303 304 5.798934 CGTGTGATCTACTACCACTAACAAC 59.201 44.000 0.00 0.00 0.00 3.32
304 305 5.706833 TCGTGTGATCTACTACCACTAACAA 59.293 40.000 0.00 0.00 0.00 2.83
305 306 5.247862 TCGTGTGATCTACTACCACTAACA 58.752 41.667 0.00 0.00 0.00 2.41
306 307 5.808042 TCGTGTGATCTACTACCACTAAC 57.192 43.478 0.00 0.00 0.00 2.34
307 308 5.220989 GCATCGTGTGATCTACTACCACTAA 60.221 44.000 0.00 0.00 30.49 2.24
308 309 4.275196 GCATCGTGTGATCTACTACCACTA 59.725 45.833 0.00 0.00 30.49 2.74
309 310 3.066900 GCATCGTGTGATCTACTACCACT 59.933 47.826 0.00 0.00 30.49 4.00
310 311 3.066900 AGCATCGTGTGATCTACTACCAC 59.933 47.826 0.00 0.00 30.49 4.16
311 312 3.288092 AGCATCGTGTGATCTACTACCA 58.712 45.455 0.00 0.00 30.49 3.25
312 313 3.992260 AGCATCGTGTGATCTACTACC 57.008 47.619 0.00 0.00 30.49 3.18
313 314 5.817988 TGTAAGCATCGTGTGATCTACTAC 58.182 41.667 0.00 0.00 30.49 2.73
314 315 6.061231 CTGTAAGCATCGTGTGATCTACTA 57.939 41.667 0.00 0.00 30.49 1.82
315 316 4.926244 CTGTAAGCATCGTGTGATCTACT 58.074 43.478 0.00 0.00 30.49 2.57
331 332 4.322080 TTGAGATCGGTATGGCTGTAAG 57.678 45.455 0.00 0.00 0.00 2.34
332 333 4.746535 TTTGAGATCGGTATGGCTGTAA 57.253 40.909 0.00 0.00 0.00 2.41
333 334 4.161565 AGTTTTGAGATCGGTATGGCTGTA 59.838 41.667 0.00 0.00 0.00 2.74
334 335 3.055094 AGTTTTGAGATCGGTATGGCTGT 60.055 43.478 0.00 0.00 0.00 4.40
335 336 3.535561 AGTTTTGAGATCGGTATGGCTG 58.464 45.455 0.00 0.00 0.00 4.85
336 337 3.914426 AGTTTTGAGATCGGTATGGCT 57.086 42.857 0.00 0.00 0.00 4.75
337 338 6.093633 AGTTTAAGTTTTGAGATCGGTATGGC 59.906 38.462 0.00 0.00 0.00 4.40
338 339 7.611213 AGTTTAAGTTTTGAGATCGGTATGG 57.389 36.000 0.00 0.00 0.00 2.74
341 342 9.582431 CTGATAGTTTAAGTTTTGAGATCGGTA 57.418 33.333 0.00 0.00 0.00 4.02
342 343 7.064728 GCTGATAGTTTAAGTTTTGAGATCGGT 59.935 37.037 0.00 0.00 0.00 4.69
343 344 7.402640 GCTGATAGTTTAAGTTTTGAGATCGG 58.597 38.462 0.00 0.00 0.00 4.18
344 345 7.064609 TGGCTGATAGTTTAAGTTTTGAGATCG 59.935 37.037 0.00 0.00 0.00 3.69
345 346 8.178313 GTGGCTGATAGTTTAAGTTTTGAGATC 58.822 37.037 0.00 0.00 0.00 2.75
346 347 7.148407 CGTGGCTGATAGTTTAAGTTTTGAGAT 60.148 37.037 0.00 0.00 0.00 2.75
347 348 6.147164 CGTGGCTGATAGTTTAAGTTTTGAGA 59.853 38.462 0.00 0.00 0.00 3.27
348 349 6.147164 TCGTGGCTGATAGTTTAAGTTTTGAG 59.853 38.462 0.00 0.00 0.00 3.02
349 350 5.992829 TCGTGGCTGATAGTTTAAGTTTTGA 59.007 36.000 0.00 0.00 0.00 2.69
350 351 6.147164 TCTCGTGGCTGATAGTTTAAGTTTTG 59.853 38.462 0.00 0.00 0.00 2.44
351 352 6.228258 TCTCGTGGCTGATAGTTTAAGTTTT 58.772 36.000 0.00 0.00 0.00 2.43
352 353 5.790593 TCTCGTGGCTGATAGTTTAAGTTT 58.209 37.500 0.00 0.00 0.00 2.66
353 354 5.401531 TCTCGTGGCTGATAGTTTAAGTT 57.598 39.130 0.00 0.00 0.00 2.66
354 355 5.401531 TTCTCGTGGCTGATAGTTTAAGT 57.598 39.130 0.00 0.00 0.00 2.24
355 356 4.268884 GCTTCTCGTGGCTGATAGTTTAAG 59.731 45.833 0.00 0.00 0.00 1.85
356 357 4.181578 GCTTCTCGTGGCTGATAGTTTAA 58.818 43.478 0.00 0.00 0.00 1.52
357 358 3.733988 CGCTTCTCGTGGCTGATAGTTTA 60.734 47.826 0.00 0.00 0.00 2.01
358 359 2.622436 GCTTCTCGTGGCTGATAGTTT 58.378 47.619 0.00 0.00 0.00 2.66
359 360 1.469940 CGCTTCTCGTGGCTGATAGTT 60.470 52.381 0.00 0.00 0.00 2.24
360 361 0.101399 CGCTTCTCGTGGCTGATAGT 59.899 55.000 0.00 0.00 0.00 2.12
361 362 1.211818 GCGCTTCTCGTGGCTGATAG 61.212 60.000 0.00 0.00 41.07 2.08
362 363 1.226974 GCGCTTCTCGTGGCTGATA 60.227 57.895 0.00 0.00 41.07 2.15
363 364 2.510238 GCGCTTCTCGTGGCTGAT 60.510 61.111 0.00 0.00 41.07 2.90
364 365 4.742201 GGCGCTTCTCGTGGCTGA 62.742 66.667 7.64 0.00 44.54 4.26
368 369 4.749310 AGCTGGCGCTTCTCGTGG 62.749 66.667 7.64 0.00 46.47 4.94
383 384 1.212616 GACATGTATGGAGCACGAGC 58.787 55.000 0.00 0.00 42.56 5.03
384 385 1.481240 CGACATGTATGGAGCACGAG 58.519 55.000 0.00 0.00 0.00 4.18
385 386 0.527600 GCGACATGTATGGAGCACGA 60.528 55.000 0.00 0.00 35.43 4.35
386 387 0.805711 TGCGACATGTATGGAGCACG 60.806 55.000 0.00 0.00 38.62 5.34
387 388 3.064079 TGCGACATGTATGGAGCAC 57.936 52.632 0.00 0.00 38.62 4.40
388 389 0.805711 CGTGCGACATGTATGGAGCA 60.806 55.000 0.00 3.30 40.23 4.26
389 390 1.927210 CGTGCGACATGTATGGAGC 59.073 57.895 0.00 0.44 35.74 4.70
390 391 1.490693 GGCGTGCGACATGTATGGAG 61.491 60.000 0.00 0.00 0.00 3.86
391 392 1.520564 GGCGTGCGACATGTATGGA 60.521 57.895 0.00 0.00 0.00 3.41
392 393 2.870341 CGGCGTGCGACATGTATGG 61.870 63.158 0.00 0.00 0.00 2.74
393 394 2.620459 CGGCGTGCGACATGTATG 59.380 61.111 0.00 0.00 0.00 2.39
394 395 3.261951 GCGGCGTGCGACATGTAT 61.262 61.111 9.37 0.00 0.00 2.29
440 441 9.931698 ACCGTGGATGTAGATAGGATTATTATA 57.068 33.333 0.00 0.00 0.00 0.98
441 442 8.840200 ACCGTGGATGTAGATAGGATTATTAT 57.160 34.615 0.00 0.00 0.00 1.28
442 443 7.066645 CGACCGTGGATGTAGATAGGATTATTA 59.933 40.741 0.00 0.00 0.00 0.98
443 444 6.127703 CGACCGTGGATGTAGATAGGATTATT 60.128 42.308 0.00 0.00 0.00 1.40
444 445 5.357314 CGACCGTGGATGTAGATAGGATTAT 59.643 44.000 0.00 0.00 0.00 1.28
445 446 4.698780 CGACCGTGGATGTAGATAGGATTA 59.301 45.833 0.00 0.00 0.00 1.75
446 447 3.506455 CGACCGTGGATGTAGATAGGATT 59.494 47.826 0.00 0.00 0.00 3.01
447 448 3.082548 CGACCGTGGATGTAGATAGGAT 58.917 50.000 0.00 0.00 0.00 3.24
448 449 2.501261 CGACCGTGGATGTAGATAGGA 58.499 52.381 0.00 0.00 0.00 2.94
449 450 1.068472 GCGACCGTGGATGTAGATAGG 60.068 57.143 0.00 0.00 0.00 2.57
450 451 1.068472 GGCGACCGTGGATGTAGATAG 60.068 57.143 0.00 0.00 0.00 2.08
456 457 1.449601 GAATGGCGACCGTGGATGT 60.450 57.895 0.00 0.00 0.00 3.06
460 461 1.153369 ATGAGAATGGCGACCGTGG 60.153 57.895 0.00 0.00 0.00 4.94
461 462 2.009108 CATGAGAATGGCGACCGTG 58.991 57.895 0.00 0.00 0.00 4.94
465 466 1.354506 GCAGCATGAGAATGGCGAC 59.645 57.895 0.00 0.00 39.69 5.19
484 485 4.699522 GTGGTGGAGTCCGGTGGC 62.700 72.222 4.30 0.00 0.00 5.01
490 501 1.351017 TGAATCAAGGTGGTGGAGTCC 59.649 52.381 0.73 0.73 0.00 3.85
493 504 2.867109 ACTGAATCAAGGTGGTGGAG 57.133 50.000 0.00 0.00 0.00 3.86
517 528 1.098050 CAATGGAGGCCGGAGAAAAG 58.902 55.000 5.05 0.00 0.00 2.27
543 554 1.841919 TCCATGGATGTGATGTGAGCT 59.158 47.619 11.44 0.00 0.00 4.09
549 560 2.228059 GCTTCCTCCATGGATGTGATG 58.772 52.381 16.63 14.49 45.68 3.07
550 561 1.144503 GGCTTCCTCCATGGATGTGAT 59.855 52.381 16.63 0.00 45.68 3.06
555 571 3.125376 GCCGGCTTCCTCCATGGAT 62.125 63.158 22.15 0.00 45.68 3.41
576 594 2.607750 ATCACCACCTCCAGCCGT 60.608 61.111 0.00 0.00 0.00 5.68
578 596 0.678048 GAACATCACCACCTCCAGCC 60.678 60.000 0.00 0.00 0.00 4.85
924 10195 2.523184 CTTGTGCTCGTCGGCGACTA 62.523 60.000 33.90 24.41 42.81 2.59
925 10196 3.898627 CTTGTGCTCGTCGGCGACT 62.899 63.158 33.90 0.00 42.81 4.18
926 10197 3.470567 CTTGTGCTCGTCGGCGAC 61.471 66.667 29.06 29.06 42.81 5.19
962 10795 1.760086 AGGAGCCCAGGACGATCTG 60.760 63.158 0.00 0.00 34.70 2.90
988 10821 2.119029 GTCCCATAAAGGCGGCCAC 61.119 63.158 23.09 3.76 35.39 5.01
1047 10880 1.577328 CGGGCGCAACAATGAAGTCT 61.577 55.000 10.83 0.00 0.00 3.24
1201 11037 2.187946 GCAGCTGCGGTAGATGGT 59.812 61.111 25.23 0.00 43.00 3.55
1237 11073 4.828925 GCTGAGGAGGGCGAGCAC 62.829 72.222 0.00 0.00 0.00 4.40
1253 11089 0.615850 AGGCTTCTGGTAGAGGTTGC 59.384 55.000 0.00 0.00 0.00 4.17
1255 11091 1.909986 GGAAGGCTTCTGGTAGAGGTT 59.090 52.381 25.25 0.00 0.00 3.50
1262 11098 1.078143 GCGATGGAAGGCTTCTGGT 60.078 57.895 25.25 12.36 0.00 4.00
1345 11187 2.357034 GTCGTCCAGCCAGCGAAA 60.357 61.111 0.00 0.00 36.37 3.46
1356 11198 1.077716 CTTTGGGGGATGGTCGTCC 60.078 63.158 0.67 0.67 37.56 4.79
1365 11207 0.546747 AGATGACGGACTTTGGGGGA 60.547 55.000 0.00 0.00 0.00 4.81
1520 11362 3.986006 GCACTCCGTGGTCGTCCA 61.986 66.667 0.00 0.00 42.05 4.02
1573 11418 1.610673 ACCCAGTCTCGACCATGCT 60.611 57.895 0.00 0.00 0.00 3.79
1714 11559 2.882876 GACGAGCGGCTGGTCTAA 59.117 61.111 30.19 0.00 40.48 2.10
1915 11760 3.388059 CAACGTCGTCGATGTACCA 57.612 52.632 19.90 0.00 40.62 3.25
1948 11793 8.511321 CCACTTAAACTATGCATCTTTGTAACA 58.489 33.333 0.19 0.00 0.00 2.41
1961 11806 2.351726 GCACCGAGCCACTTAAACTATG 59.648 50.000 0.00 0.00 37.23 2.23
1965 11810 1.165270 ATGCACCGAGCCACTTAAAC 58.835 50.000 0.00 0.00 44.83 2.01
1970 11815 1.968017 CACAATGCACCGAGCCACT 60.968 57.895 0.00 0.00 44.83 4.00
1972 11817 2.112928 ACACAATGCACCGAGCCA 59.887 55.556 0.00 0.00 44.83 4.75
1978 13074 2.575694 TTCACAACACACAATGCACC 57.424 45.000 0.00 0.00 0.00 5.01
1991 13087 9.796120 AGAAAACGAGTTCAATTAATTTCACAA 57.204 25.926 0.00 0.00 0.00 3.33
2009 13105 3.376859 ACTGATGCAACACAAGAAAACGA 59.623 39.130 0.00 0.00 0.00 3.85
2063 13159 6.899393 ATTTAAGCTGGACATTGAAGACAA 57.101 33.333 0.00 0.00 40.42 3.18
2092 13188 9.683069 GTGAACTCAATGTGTATTTTCTTGATT 57.317 29.630 0.00 0.00 0.00 2.57
2167 13265 6.007703 CCCTTGAAACAAACACCCTCTTATA 58.992 40.000 0.00 0.00 0.00 0.98
2232 13331 5.098663 AGTCCCTCCTGTTTGGTTTAGATA 58.901 41.667 0.00 0.00 37.07 1.98
2306 13405 7.604657 TTACTCCACTTCTCTCTCTTTTCTT 57.395 36.000 0.00 0.00 0.00 2.52
2312 13411 6.019748 TCCATTTTACTCCACTTCTCTCTCT 58.980 40.000 0.00 0.00 0.00 3.10
2313 13412 6.287589 TCCATTTTACTCCACTTCTCTCTC 57.712 41.667 0.00 0.00 0.00 3.20
2314 13413 6.882768 ATCCATTTTACTCCACTTCTCTCT 57.117 37.500 0.00 0.00 0.00 3.10
2315 13414 7.106239 TGAATCCATTTTACTCCACTTCTCTC 58.894 38.462 0.00 0.00 0.00 3.20
2316 13415 7.020827 TGAATCCATTTTACTCCACTTCTCT 57.979 36.000 0.00 0.00 0.00 3.10
2317 13416 7.687941 TTGAATCCATTTTACTCCACTTCTC 57.312 36.000 0.00 0.00 0.00 2.87
2318 13417 8.526147 CATTTGAATCCATTTTACTCCACTTCT 58.474 33.333 0.00 0.00 0.00 2.85
2319 13418 7.276438 GCATTTGAATCCATTTTACTCCACTTC 59.724 37.037 0.00 0.00 0.00 3.01
2320 13419 7.099120 GCATTTGAATCCATTTTACTCCACTT 58.901 34.615 0.00 0.00 0.00 3.16
2321 13420 6.351286 GGCATTTGAATCCATTTTACTCCACT 60.351 38.462 0.00 0.00 0.00 4.00
2322 13421 5.812127 GGCATTTGAATCCATTTTACTCCAC 59.188 40.000 0.00 0.00 0.00 4.02
2323 13422 5.394005 CGGCATTTGAATCCATTTTACTCCA 60.394 40.000 0.00 0.00 0.00 3.86
2324 13423 5.043248 CGGCATTTGAATCCATTTTACTCC 58.957 41.667 0.00 0.00 0.00 3.85
2325 13424 5.043248 CCGGCATTTGAATCCATTTTACTC 58.957 41.667 0.00 0.00 0.00 2.59
2326 13425 4.141959 CCCGGCATTTGAATCCATTTTACT 60.142 41.667 0.00 0.00 0.00 2.24
2327 13426 4.119136 CCCGGCATTTGAATCCATTTTAC 58.881 43.478 0.00 0.00 0.00 2.01
2328 13427 4.026744 TCCCGGCATTTGAATCCATTTTA 58.973 39.130 0.00 0.00 0.00 1.52
2329 13428 2.836981 TCCCGGCATTTGAATCCATTTT 59.163 40.909 0.00 0.00 0.00 1.82
2330 13429 2.431782 CTCCCGGCATTTGAATCCATTT 59.568 45.455 0.00 0.00 0.00 2.32
2331 13430 2.034124 CTCCCGGCATTTGAATCCATT 58.966 47.619 0.00 0.00 0.00 3.16
2332 13431 1.696063 CTCCCGGCATTTGAATCCAT 58.304 50.000 0.00 0.00 0.00 3.41
2333 13432 0.395586 CCTCCCGGCATTTGAATCCA 60.396 55.000 0.00 0.00 0.00 3.41
2334 13433 0.106719 TCCTCCCGGCATTTGAATCC 60.107 55.000 0.00 0.00 0.00 3.01
2335 13434 1.405463 GTTCCTCCCGGCATTTGAATC 59.595 52.381 0.00 0.00 0.00 2.52
2336 13435 1.005924 AGTTCCTCCCGGCATTTGAAT 59.994 47.619 0.00 0.00 0.00 2.57
2337 13436 0.404040 AGTTCCTCCCGGCATTTGAA 59.596 50.000 0.00 0.00 0.00 2.69
2338 13437 0.404040 AAGTTCCTCCCGGCATTTGA 59.596 50.000 0.00 0.00 0.00 2.69
2339 13438 2.122783 TAAGTTCCTCCCGGCATTTG 57.877 50.000 0.00 0.00 0.00 2.32
2340 13439 3.023832 CAATAAGTTCCTCCCGGCATTT 58.976 45.455 0.00 0.00 0.00 2.32
2341 13440 2.654863 CAATAAGTTCCTCCCGGCATT 58.345 47.619 0.00 0.00 0.00 3.56
2342 13441 1.133792 CCAATAAGTTCCTCCCGGCAT 60.134 52.381 0.00 0.00 0.00 4.40
2343 13442 0.254747 CCAATAAGTTCCTCCCGGCA 59.745 55.000 0.00 0.00 0.00 5.69
2344 13443 0.465642 CCCAATAAGTTCCTCCCGGC 60.466 60.000 0.00 0.00 0.00 6.13
2345 13444 1.134189 GTCCCAATAAGTTCCTCCCGG 60.134 57.143 0.00 0.00 0.00 5.73
2346 13445 1.838077 AGTCCCAATAAGTTCCTCCCG 59.162 52.381 0.00 0.00 0.00 5.14
2347 13446 5.622180 GATAAGTCCCAATAAGTTCCTCCC 58.378 45.833 0.00 0.00 0.00 4.30
2348 13447 5.070047 TCGATAAGTCCCAATAAGTTCCTCC 59.930 44.000 0.00 0.00 0.00 4.30
2349 13448 6.158023 TCGATAAGTCCCAATAAGTTCCTC 57.842 41.667 0.00 0.00 0.00 3.71
2350 13449 6.555360 AGATCGATAAGTCCCAATAAGTTCCT 59.445 38.462 0.00 0.00 0.00 3.36
2351 13450 6.647067 CAGATCGATAAGTCCCAATAAGTTCC 59.353 42.308 0.00 0.00 0.00 3.62
2352 13451 6.647067 CCAGATCGATAAGTCCCAATAAGTTC 59.353 42.308 0.00 0.00 0.00 3.01
2353 13452 6.326583 TCCAGATCGATAAGTCCCAATAAGTT 59.673 38.462 0.00 0.00 0.00 2.66
2354 13453 5.839063 TCCAGATCGATAAGTCCCAATAAGT 59.161 40.000 0.00 0.00 0.00 2.24
2761 13921 7.335171 GGGACTTATAAGTTGATAAAACACGGT 59.665 37.037 18.96 0.00 39.88 4.83
2762 13922 7.551617 AGGGACTTATAAGTTGATAAAACACGG 59.448 37.037 18.96 0.00 39.88 4.94
2763 13923 8.388103 CAGGGACTTATAAGTTGATAAAACACG 58.612 37.037 18.96 0.00 39.88 4.49
2890 17041 6.549242 AGTACTTAGGCCCTGTTTGTTTAAT 58.451 36.000 0.00 0.00 0.00 1.40
2928 17079 7.082602 CGGTAGCTGATACGTCTTAAATGTAT 58.917 38.462 0.00 3.60 41.77 2.29
2929 17080 6.432936 CGGTAGCTGATACGTCTTAAATGTA 58.567 40.000 0.00 0.00 34.99 2.29
2930 17081 5.279384 CGGTAGCTGATACGTCTTAAATGT 58.721 41.667 0.00 0.00 34.99 2.71
2931 17082 4.680110 CCGGTAGCTGATACGTCTTAAATG 59.320 45.833 0.00 0.00 34.99 2.32
2932 17083 4.340381 ACCGGTAGCTGATACGTCTTAAAT 59.660 41.667 4.49 0.00 34.99 1.40
2933 17084 3.696051 ACCGGTAGCTGATACGTCTTAAA 59.304 43.478 4.49 0.00 34.99 1.52
2934 17085 3.282021 ACCGGTAGCTGATACGTCTTAA 58.718 45.455 4.49 0.00 34.99 1.85
2935 17086 2.923121 ACCGGTAGCTGATACGTCTTA 58.077 47.619 4.49 0.00 34.99 2.10
2936 17087 1.760192 ACCGGTAGCTGATACGTCTT 58.240 50.000 4.49 0.00 34.99 3.01
2937 17088 1.404391 CAACCGGTAGCTGATACGTCT 59.596 52.381 8.00 0.00 34.99 4.18
2938 17089 1.535437 CCAACCGGTAGCTGATACGTC 60.535 57.143 8.00 0.00 34.99 4.34
2939 17090 0.458669 CCAACCGGTAGCTGATACGT 59.541 55.000 8.00 0.00 34.99 3.57
2940 17091 0.742505 TCCAACCGGTAGCTGATACG 59.257 55.000 8.00 0.00 34.99 3.06
2941 17092 1.068741 CCTCCAACCGGTAGCTGATAC 59.931 57.143 8.00 0.00 0.00 2.24
2942 17093 1.410004 CCTCCAACCGGTAGCTGATA 58.590 55.000 8.00 0.00 0.00 2.15
2943 17094 1.338136 CCCTCCAACCGGTAGCTGAT 61.338 60.000 8.00 0.00 0.00 2.90
2944 17095 1.987855 CCCTCCAACCGGTAGCTGA 60.988 63.158 8.00 0.83 0.00 4.26
2945 17096 1.987855 TCCCTCCAACCGGTAGCTG 60.988 63.158 8.00 1.67 0.00 4.24
2946 17097 1.988406 GTCCCTCCAACCGGTAGCT 60.988 63.158 8.00 0.00 0.00 3.32
2947 17098 2.582978 GTCCCTCCAACCGGTAGC 59.417 66.667 8.00 0.00 0.00 3.58
2948 17099 3.306379 GGTCCCTCCAACCGGTAG 58.694 66.667 8.00 0.43 35.97 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.