Multiple sequence alignment - TraesCS5D01G463800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G463800 chr5D 100.000 3466 0 0 1 3466 507423098 507419633 0.000000e+00 6401
1 TraesCS5D01G463800 chr5D 82.152 2045 228 73 1472 3466 507197220 507195263 0.000000e+00 1628
2 TraesCS5D01G463800 chr5D 76.839 1645 249 77 1057 2653 506949988 506948428 0.000000e+00 806
3 TraesCS5D01G463800 chr5D 92.430 502 32 4 910 1406 507139641 507139141 0.000000e+00 712
4 TraesCS5D01G463800 chr5D 79.633 982 147 30 1474 2427 507138797 507137841 0.000000e+00 656
5 TraesCS5D01G463800 chr5D 84.880 582 68 14 222 788 507142035 507141459 1.400000e-158 569
6 TraesCS5D01G463800 chr5D 86.176 340 47 0 1057 1396 507266581 507266242 5.470000e-98 368
7 TraesCS5D01G463800 chr5D 76.716 743 112 42 1605 2302 507166204 507165478 1.180000e-94 357
8 TraesCS5D01G463800 chr5D 77.441 594 79 27 2097 2657 506941358 506940787 1.560000e-78 303
9 TraesCS5D01G463800 chr5D 82.061 262 38 5 3211 3466 507136092 507135834 7.530000e-52 215
10 TraesCS5D01G463800 chr5D 82.700 237 21 9 3248 3466 507171477 507171243 3.530000e-45 193
11 TraesCS5D01G463800 chr5D 80.214 187 20 13 3294 3465 507240487 507240303 1.310000e-24 124
12 TraesCS5D01G463800 chr5B 90.729 1413 84 15 931 2325 637447470 637446087 0.000000e+00 1840
13 TraesCS5D01G463800 chr5B 93.473 1149 49 9 2321 3466 637444094 637442969 0.000000e+00 1683
14 TraesCS5D01G463800 chr5A 87.846 1193 109 10 1472 2652 634498822 634497654 0.000000e+00 1367
15 TraesCS5D01G463800 chr5A 91.286 723 37 9 2688 3407 634497651 634496952 0.000000e+00 963
16 TraesCS5D01G463800 chr5A 90.612 490 41 5 931 1419 634499384 634498899 0.000000e+00 645
17 TraesCS5D01G463800 chr5A 82.427 239 20 12 3248 3466 634490776 634490540 4.570000e-44 189
18 TraesCS5D01G463800 chr5A 92.647 68 5 0 3399 3466 634495995 634495928 7.920000e-17 99
19 TraesCS5D01G463800 chr4D 93.088 217 14 1 1 216 318293232 318293016 2.010000e-82 316
20 TraesCS5D01G463800 chr4D 90.610 213 19 1 1 213 126771690 126771479 7.320000e-72 281
21 TraesCS5D01G463800 chr4D 90.141 213 21 0 1 213 412680479 412680691 9.470000e-71 278
22 TraesCS5D01G463800 chr7D 91.509 212 18 0 1 212 411300166 411299955 3.380000e-75 292
23 TraesCS5D01G463800 chr2B 91.469 211 18 0 1 211 258624588 258624378 1.220000e-74 291
24 TraesCS5D01G463800 chr4B 90.741 216 19 1 2 216 395611455 395611240 1.570000e-73 287
25 TraesCS5D01G463800 chr7B 90.278 216 21 0 1 216 342208048 342207833 2.040000e-72 283
26 TraesCS5D01G463800 chr2A 90.278 216 20 1 1 216 53777787 53777573 7.320000e-72 281
27 TraesCS5D01G463800 chr1D 89.286 224 22 2 1 223 390753211 390753433 2.630000e-71 279


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G463800 chr5D 507419633 507423098 3465 True 6401.0 6401 100.00000 1 3466 1 chr5D.!!$R8 3465
1 TraesCS5D01G463800 chr5D 507195263 507197220 1957 True 1628.0 1628 82.15200 1472 3466 1 chr5D.!!$R5 1994
2 TraesCS5D01G463800 chr5D 506948428 506949988 1560 True 806.0 806 76.83900 1057 2653 1 chr5D.!!$R2 1596
3 TraesCS5D01G463800 chr5D 507135834 507142035 6201 True 538.0 712 84.75100 222 3466 4 chr5D.!!$R9 3244
4 TraesCS5D01G463800 chr5D 507165478 507166204 726 True 357.0 357 76.71600 1605 2302 1 chr5D.!!$R3 697
5 TraesCS5D01G463800 chr5D 506940787 506941358 571 True 303.0 303 77.44100 2097 2657 1 chr5D.!!$R1 560
6 TraesCS5D01G463800 chr5B 637442969 637447470 4501 True 1761.5 1840 92.10100 931 3466 2 chr5B.!!$R1 2535
7 TraesCS5D01G463800 chr5A 634495928 634499384 3456 True 768.5 1367 90.59775 931 3466 4 chr5A.!!$R2 2535

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
143 144 0.036765 TCCGATCAACCCCGTTCAAG 60.037 55.0 0.0 0.0 0.0 3.02 F
203 204 0.109272 TCGAGAACATCTGCCGTGAC 60.109 55.0 0.0 0.0 0.0 3.67 F
1756 3851 0.323725 GGCAGATCTCCCCAAAAGCA 60.324 55.0 0.0 0.0 0.0 3.91 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1847 3945 0.040958 GTTGCCGTGTTCAGCTTCAG 60.041 55.0 0.00 0.00 0.00 3.02 R
1849 3947 0.317020 GTGTTGCCGTGTTCAGCTTC 60.317 55.0 0.00 0.00 0.00 3.86 R
3134 8263 1.185315 CCTACCCATGGGCACAAAAG 58.815 55.0 31.73 16.98 39.32 2.27 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 3.954999 GAGTACTAGCTTAGCCAAGTCG 58.045 50.000 12.21 0.00 34.00 4.18
22 23 2.099427 AGTACTAGCTTAGCCAAGTCGC 59.901 50.000 12.21 7.93 34.00 5.19
23 24 0.895530 ACTAGCTTAGCCAAGTCGCA 59.104 50.000 0.00 0.00 34.00 5.10
24 25 1.281899 CTAGCTTAGCCAAGTCGCAC 58.718 55.000 0.00 0.00 34.00 5.34
25 26 0.108329 TAGCTTAGCCAAGTCGCACC 60.108 55.000 0.00 0.00 34.00 5.01
26 27 2.399356 GCTTAGCCAAGTCGCACCC 61.399 63.158 0.00 0.00 34.00 4.61
27 28 1.745489 CTTAGCCAAGTCGCACCCC 60.745 63.158 0.00 0.00 0.00 4.95
28 29 2.185310 CTTAGCCAAGTCGCACCCCT 62.185 60.000 0.00 0.00 0.00 4.79
29 30 0.905809 TTAGCCAAGTCGCACCCCTA 60.906 55.000 0.00 0.00 0.00 3.53
30 31 0.689745 TAGCCAAGTCGCACCCCTAT 60.690 55.000 0.00 0.00 0.00 2.57
31 32 0.689745 AGCCAAGTCGCACCCCTATA 60.690 55.000 0.00 0.00 0.00 1.31
32 33 0.179468 GCCAAGTCGCACCCCTATAA 59.821 55.000 0.00 0.00 0.00 0.98
33 34 1.202770 GCCAAGTCGCACCCCTATAAT 60.203 52.381 0.00 0.00 0.00 1.28
34 35 2.767505 CCAAGTCGCACCCCTATAATC 58.232 52.381 0.00 0.00 0.00 1.75
35 36 2.104111 CCAAGTCGCACCCCTATAATCA 59.896 50.000 0.00 0.00 0.00 2.57
36 37 3.433031 CCAAGTCGCACCCCTATAATCAA 60.433 47.826 0.00 0.00 0.00 2.57
37 38 3.753294 AGTCGCACCCCTATAATCAAG 57.247 47.619 0.00 0.00 0.00 3.02
38 39 3.305720 AGTCGCACCCCTATAATCAAGA 58.694 45.455 0.00 0.00 0.00 3.02
39 40 3.904339 AGTCGCACCCCTATAATCAAGAT 59.096 43.478 0.00 0.00 0.00 2.40
40 41 4.021016 AGTCGCACCCCTATAATCAAGATC 60.021 45.833 0.00 0.00 0.00 2.75
41 42 3.260884 TCGCACCCCTATAATCAAGATCC 59.739 47.826 0.00 0.00 0.00 3.36
42 43 3.619979 CGCACCCCTATAATCAAGATCCC 60.620 52.174 0.00 0.00 0.00 3.85
43 44 3.330701 GCACCCCTATAATCAAGATCCCA 59.669 47.826 0.00 0.00 0.00 4.37
44 45 4.202567 GCACCCCTATAATCAAGATCCCAA 60.203 45.833 0.00 0.00 0.00 4.12
45 46 5.692781 GCACCCCTATAATCAAGATCCCAAA 60.693 44.000 0.00 0.00 0.00 3.28
46 47 5.770162 CACCCCTATAATCAAGATCCCAAAC 59.230 44.000 0.00 0.00 0.00 2.93
47 48 5.435041 ACCCCTATAATCAAGATCCCAAACA 59.565 40.000 0.00 0.00 0.00 2.83
48 49 6.068498 ACCCCTATAATCAAGATCCCAAACAA 60.068 38.462 0.00 0.00 0.00 2.83
49 50 7.012607 CCCCTATAATCAAGATCCCAAACAAT 58.987 38.462 0.00 0.00 0.00 2.71
50 51 8.170061 CCCCTATAATCAAGATCCCAAACAATA 58.830 37.037 0.00 0.00 0.00 1.90
51 52 9.586732 CCCTATAATCAAGATCCCAAACAATAA 57.413 33.333 0.00 0.00 0.00 1.40
55 56 7.976414 AATCAAGATCCCAAACAATAATCCA 57.024 32.000 0.00 0.00 0.00 3.41
56 57 8.557304 AATCAAGATCCCAAACAATAATCCAT 57.443 30.769 0.00 0.00 0.00 3.41
57 58 7.587037 TCAAGATCCCAAACAATAATCCATC 57.413 36.000 0.00 0.00 0.00 3.51
58 59 7.124721 TCAAGATCCCAAACAATAATCCATCA 58.875 34.615 0.00 0.00 0.00 3.07
59 60 7.618907 TCAAGATCCCAAACAATAATCCATCAA 59.381 33.333 0.00 0.00 0.00 2.57
60 61 7.592885 AGATCCCAAACAATAATCCATCAAG 57.407 36.000 0.00 0.00 0.00 3.02
61 62 5.596836 TCCCAAACAATAATCCATCAAGC 57.403 39.130 0.00 0.00 0.00 4.01
62 63 5.022122 TCCCAAACAATAATCCATCAAGCA 58.978 37.500 0.00 0.00 0.00 3.91
63 64 5.127519 TCCCAAACAATAATCCATCAAGCAG 59.872 40.000 0.00 0.00 0.00 4.24
64 65 5.353938 CCAAACAATAATCCATCAAGCAGG 58.646 41.667 0.00 0.00 0.00 4.85
65 66 5.127519 CCAAACAATAATCCATCAAGCAGGA 59.872 40.000 0.00 0.00 38.50 3.86
66 67 6.351202 CCAAACAATAATCCATCAAGCAGGAA 60.351 38.462 0.00 0.00 37.48 3.36
67 68 6.855763 AACAATAATCCATCAAGCAGGAAA 57.144 33.333 0.00 0.00 37.48 3.13
68 69 7.427989 AACAATAATCCATCAAGCAGGAAAT 57.572 32.000 0.00 0.00 37.48 2.17
69 70 8.537728 AACAATAATCCATCAAGCAGGAAATA 57.462 30.769 0.00 0.00 37.48 1.40
70 71 8.174733 ACAATAATCCATCAAGCAGGAAATAG 57.825 34.615 0.00 0.00 37.48 1.73
71 72 7.232127 ACAATAATCCATCAAGCAGGAAATAGG 59.768 37.037 0.00 0.00 37.48 2.57
72 73 2.936202 TCCATCAAGCAGGAAATAGGC 58.064 47.619 0.00 0.00 0.00 3.93
73 74 2.511218 TCCATCAAGCAGGAAATAGGCT 59.489 45.455 0.00 0.00 40.14 4.58
74 75 3.716353 TCCATCAAGCAGGAAATAGGCTA 59.284 43.478 0.00 0.00 36.76 3.93
75 76 4.352001 TCCATCAAGCAGGAAATAGGCTAT 59.648 41.667 0.00 0.00 36.76 2.97
76 77 5.075493 CCATCAAGCAGGAAATAGGCTATT 58.925 41.667 13.96 13.96 36.76 1.73
77 78 6.044287 TCCATCAAGCAGGAAATAGGCTATTA 59.956 38.462 19.53 1.88 36.76 0.98
78 79 6.150140 CCATCAAGCAGGAAATAGGCTATTAC 59.850 42.308 19.53 15.10 36.76 1.89
79 80 5.621193 TCAAGCAGGAAATAGGCTATTACC 58.379 41.667 19.53 13.89 36.76 2.85
80 81 5.369699 TCAAGCAGGAAATAGGCTATTACCT 59.630 40.000 19.53 4.94 44.31 3.08
81 82 5.491323 AGCAGGAAATAGGCTATTACCTC 57.509 43.478 19.53 13.31 41.50 3.85
82 83 4.287326 AGCAGGAAATAGGCTATTACCTCC 59.713 45.833 21.28 21.28 41.50 4.30
83 84 4.041691 GCAGGAAATAGGCTATTACCTCCA 59.958 45.833 26.72 0.00 41.50 3.86
84 85 5.552178 CAGGAAATAGGCTATTACCTCCAC 58.448 45.833 26.72 12.30 41.50 4.02
85 86 4.597940 AGGAAATAGGCTATTACCTCCACC 59.402 45.833 26.72 17.78 41.50 4.61
86 87 4.562963 GGAAATAGGCTATTACCTCCACCG 60.563 50.000 22.86 0.00 41.50 4.94
87 88 1.335145 TAGGCTATTACCTCCACCGC 58.665 55.000 0.00 0.00 41.50 5.68
88 89 1.300697 GGCTATTACCTCCACCGCG 60.301 63.158 0.00 0.00 0.00 6.46
89 90 1.737816 GCTATTACCTCCACCGCGA 59.262 57.895 8.23 0.00 0.00 5.87
90 91 0.318784 GCTATTACCTCCACCGCGAG 60.319 60.000 8.23 0.00 0.00 5.03
106 107 4.342086 AGGGGCCGAACCTGGGTA 62.342 66.667 0.00 0.00 36.85 3.69
107 108 3.332385 GGGGCCGAACCTGGGTAA 61.332 66.667 0.00 0.00 39.10 2.85
108 109 2.758434 GGGCCGAACCTGGGTAAA 59.242 61.111 0.00 0.00 39.10 2.01
109 110 1.676635 GGGCCGAACCTGGGTAAAC 60.677 63.158 0.00 0.00 39.10 2.01
110 111 1.377612 GGCCGAACCTGGGTAAACT 59.622 57.895 0.00 0.00 34.51 2.66
111 112 0.675837 GGCCGAACCTGGGTAAACTC 60.676 60.000 0.00 0.00 34.51 3.01
112 113 1.017701 GCCGAACCTGGGTAAACTCG 61.018 60.000 0.00 5.03 0.00 4.18
113 114 0.319405 CCGAACCTGGGTAAACTCGT 59.681 55.000 0.00 0.00 0.00 4.18
114 115 1.425412 CGAACCTGGGTAAACTCGTG 58.575 55.000 0.00 0.00 0.00 4.35
115 116 1.269936 CGAACCTGGGTAAACTCGTGT 60.270 52.381 0.00 0.00 0.00 4.49
116 117 2.410939 GAACCTGGGTAAACTCGTGTC 58.589 52.381 0.00 0.00 0.00 3.67
117 118 1.713297 ACCTGGGTAAACTCGTGTCT 58.287 50.000 0.00 0.00 0.00 3.41
118 119 1.617357 ACCTGGGTAAACTCGTGTCTC 59.383 52.381 0.00 0.00 0.00 3.36
119 120 1.893801 CCTGGGTAAACTCGTGTCTCT 59.106 52.381 0.00 0.00 0.00 3.10
120 121 2.094649 CCTGGGTAAACTCGTGTCTCTC 60.095 54.545 0.00 0.00 0.00 3.20
121 122 1.538512 TGGGTAAACTCGTGTCTCTCG 59.461 52.381 0.00 0.00 0.00 4.04
122 123 1.808945 GGGTAAACTCGTGTCTCTCGA 59.191 52.381 0.00 0.00 35.96 4.04
123 124 2.422832 GGGTAAACTCGTGTCTCTCGAT 59.577 50.000 0.00 0.00 36.73 3.59
124 125 3.119566 GGGTAAACTCGTGTCTCTCGATT 60.120 47.826 0.00 0.00 36.73 3.34
125 126 4.097012 GGTAAACTCGTGTCTCTCGATTC 58.903 47.826 0.00 0.00 36.73 2.52
126 127 2.923605 AACTCGTGTCTCTCGATTCC 57.076 50.000 0.00 0.00 36.73 3.01
127 128 0.727970 ACTCGTGTCTCTCGATTCCG 59.272 55.000 0.00 0.00 36.73 4.30
128 129 1.007580 CTCGTGTCTCTCGATTCCGA 58.992 55.000 0.00 0.00 43.35 4.55
129 130 1.600013 CTCGTGTCTCTCGATTCCGAT 59.400 52.381 0.00 0.00 44.62 4.18
130 131 1.598132 TCGTGTCTCTCGATTCCGATC 59.402 52.381 0.00 0.00 44.62 3.69
131 132 1.330829 CGTGTCTCTCGATTCCGATCA 59.669 52.381 0.00 0.00 44.62 2.92
132 133 2.223272 CGTGTCTCTCGATTCCGATCAA 60.223 50.000 0.00 0.00 44.62 2.57
133 134 3.109619 GTGTCTCTCGATTCCGATCAAC 58.890 50.000 0.00 0.00 44.62 3.18
134 135 2.099263 TGTCTCTCGATTCCGATCAACC 59.901 50.000 0.00 0.00 44.62 3.77
135 136 1.681793 TCTCTCGATTCCGATCAACCC 59.318 52.381 0.00 0.00 44.62 4.11
136 137 0.750850 TCTCGATTCCGATCAACCCC 59.249 55.000 0.00 0.00 44.62 4.95
137 138 0.597637 CTCGATTCCGATCAACCCCG 60.598 60.000 0.00 0.00 44.62 5.73
138 139 1.143183 CGATTCCGATCAACCCCGT 59.857 57.895 0.00 0.00 38.22 5.28
139 140 0.461339 CGATTCCGATCAACCCCGTT 60.461 55.000 0.00 0.00 38.22 4.44
140 141 1.296727 GATTCCGATCAACCCCGTTC 58.703 55.000 0.00 0.00 32.33 3.95
141 142 0.616371 ATTCCGATCAACCCCGTTCA 59.384 50.000 0.00 0.00 0.00 3.18
142 143 0.397187 TTCCGATCAACCCCGTTCAA 59.603 50.000 0.00 0.00 0.00 2.69
143 144 0.036765 TCCGATCAACCCCGTTCAAG 60.037 55.000 0.00 0.00 0.00 3.02
144 145 1.644786 CCGATCAACCCCGTTCAAGC 61.645 60.000 0.00 0.00 0.00 4.01
145 146 0.673644 CGATCAACCCCGTTCAAGCT 60.674 55.000 0.00 0.00 0.00 3.74
146 147 1.404986 CGATCAACCCCGTTCAAGCTA 60.405 52.381 0.00 0.00 0.00 3.32
147 148 2.007608 GATCAACCCCGTTCAAGCTAC 58.992 52.381 0.00 0.00 0.00 3.58
148 149 1.053424 TCAACCCCGTTCAAGCTACT 58.947 50.000 0.00 0.00 0.00 2.57
149 150 2.250031 TCAACCCCGTTCAAGCTACTA 58.750 47.619 0.00 0.00 0.00 1.82
150 151 2.028748 TCAACCCCGTTCAAGCTACTAC 60.029 50.000 0.00 0.00 0.00 2.73
151 152 0.900421 ACCCCGTTCAAGCTACTACC 59.100 55.000 0.00 0.00 0.00 3.18
152 153 1.192428 CCCCGTTCAAGCTACTACCT 58.808 55.000 0.00 0.00 0.00 3.08
153 154 2.291800 ACCCCGTTCAAGCTACTACCTA 60.292 50.000 0.00 0.00 0.00 3.08
154 155 2.361438 CCCCGTTCAAGCTACTACCTAG 59.639 54.545 0.00 0.00 0.00 3.02
162 163 2.339728 GCTACTACCTAGCTGCGATG 57.660 55.000 0.00 0.00 44.24 3.84
163 164 1.068194 GCTACTACCTAGCTGCGATGG 60.068 57.143 0.00 6.98 44.24 3.51
164 165 0.959553 TACTACCTAGCTGCGATGGC 59.040 55.000 0.00 0.00 40.52 4.40
165 166 1.005630 CTACCTAGCTGCGATGGCC 60.006 63.158 0.00 0.00 38.85 5.36
166 167 1.457643 TACCTAGCTGCGATGGCCT 60.458 57.895 3.32 0.00 38.85 5.19
167 168 1.464376 TACCTAGCTGCGATGGCCTC 61.464 60.000 3.32 0.00 38.85 4.70
168 169 2.800541 CCTAGCTGCGATGGCCTCA 61.801 63.158 3.32 0.00 38.85 3.86
169 170 1.593750 CTAGCTGCGATGGCCTCAC 60.594 63.158 3.32 0.00 38.85 3.51
170 171 3.430565 TAGCTGCGATGGCCTCACG 62.431 63.158 3.32 8.39 38.85 4.35
172 173 2.887568 CTGCGATGGCCTCACGTC 60.888 66.667 3.32 4.58 38.85 4.34
173 174 3.362399 CTGCGATGGCCTCACGTCT 62.362 63.158 3.32 0.00 38.85 4.18
174 175 2.004808 CTGCGATGGCCTCACGTCTA 62.005 60.000 3.32 0.00 38.85 2.59
175 176 1.141019 GCGATGGCCTCACGTCTAA 59.859 57.895 3.32 0.00 0.00 2.10
176 177 0.872021 GCGATGGCCTCACGTCTAAG 60.872 60.000 3.32 0.00 0.00 2.18
177 178 0.456221 CGATGGCCTCACGTCTAAGT 59.544 55.000 3.32 0.00 0.00 2.24
178 179 1.534175 CGATGGCCTCACGTCTAAGTC 60.534 57.143 3.32 0.00 0.00 3.01
179 180 0.824759 ATGGCCTCACGTCTAAGTCC 59.175 55.000 3.32 0.00 0.00 3.85
180 181 0.251653 TGGCCTCACGTCTAAGTCCT 60.252 55.000 3.32 0.00 0.00 3.85
181 182 0.896226 GGCCTCACGTCTAAGTCCTT 59.104 55.000 0.00 0.00 0.00 3.36
182 183 1.275573 GGCCTCACGTCTAAGTCCTTT 59.724 52.381 0.00 0.00 0.00 3.11
183 184 2.289506 GGCCTCACGTCTAAGTCCTTTT 60.290 50.000 0.00 0.00 0.00 2.27
184 185 3.400255 GCCTCACGTCTAAGTCCTTTTT 58.600 45.455 0.00 0.00 0.00 1.94
185 186 3.432592 GCCTCACGTCTAAGTCCTTTTTC 59.567 47.826 0.00 0.00 0.00 2.29
186 187 3.673809 CCTCACGTCTAAGTCCTTTTTCG 59.326 47.826 0.00 0.00 0.00 3.46
187 188 4.543692 CTCACGTCTAAGTCCTTTTTCGA 58.456 43.478 0.00 0.00 0.00 3.71
188 189 4.543692 TCACGTCTAAGTCCTTTTTCGAG 58.456 43.478 0.00 0.00 0.00 4.04
189 190 4.276678 TCACGTCTAAGTCCTTTTTCGAGA 59.723 41.667 0.00 0.00 0.00 4.04
190 191 4.980434 CACGTCTAAGTCCTTTTTCGAGAA 59.020 41.667 0.00 0.00 0.00 2.87
191 192 4.981054 ACGTCTAAGTCCTTTTTCGAGAAC 59.019 41.667 0.00 0.00 0.00 3.01
192 193 4.980434 CGTCTAAGTCCTTTTTCGAGAACA 59.020 41.667 0.00 0.00 0.00 3.18
193 194 5.634020 CGTCTAAGTCCTTTTTCGAGAACAT 59.366 40.000 0.00 0.00 0.00 2.71
194 195 6.183359 CGTCTAAGTCCTTTTTCGAGAACATC 60.183 42.308 0.00 0.00 0.00 3.06
195 196 6.869388 GTCTAAGTCCTTTTTCGAGAACATCT 59.131 38.462 0.00 0.00 0.00 2.90
196 197 5.931441 AAGTCCTTTTTCGAGAACATCTG 57.069 39.130 0.00 0.00 0.00 2.90
197 198 3.748568 AGTCCTTTTTCGAGAACATCTGC 59.251 43.478 0.00 0.00 0.00 4.26
198 199 3.074412 TCCTTTTTCGAGAACATCTGCC 58.926 45.455 0.00 0.00 0.00 4.85
199 200 2.159653 CCTTTTTCGAGAACATCTGCCG 60.160 50.000 0.00 0.00 0.00 5.69
200 201 2.163818 TTTTCGAGAACATCTGCCGT 57.836 45.000 0.00 0.00 0.00 5.68
201 202 1.428448 TTTCGAGAACATCTGCCGTG 58.572 50.000 0.00 0.00 0.00 4.94
202 203 0.601057 TTCGAGAACATCTGCCGTGA 59.399 50.000 0.00 0.00 0.00 4.35
203 204 0.109272 TCGAGAACATCTGCCGTGAC 60.109 55.000 0.00 0.00 0.00 3.67
204 205 0.388520 CGAGAACATCTGCCGTGACA 60.389 55.000 0.00 0.00 0.00 3.58
205 206 1.795768 GAGAACATCTGCCGTGACAA 58.204 50.000 0.00 0.00 0.00 3.18
206 207 2.143122 GAGAACATCTGCCGTGACAAA 58.857 47.619 0.00 0.00 0.00 2.83
207 208 2.548057 GAGAACATCTGCCGTGACAAAA 59.452 45.455 0.00 0.00 0.00 2.44
208 209 2.290641 AGAACATCTGCCGTGACAAAAC 59.709 45.455 0.00 0.00 0.00 2.43
209 210 0.951558 ACATCTGCCGTGACAAAACC 59.048 50.000 0.00 0.00 0.00 3.27
210 211 0.950836 CATCTGCCGTGACAAAACCA 59.049 50.000 0.00 0.00 0.00 3.67
211 212 0.951558 ATCTGCCGTGACAAAACCAC 59.048 50.000 0.00 0.00 0.00 4.16
217 218 2.952273 GTGACAAAACCACGGCAAC 58.048 52.632 0.00 0.00 0.00 4.17
218 219 0.454196 GTGACAAAACCACGGCAACT 59.546 50.000 0.00 0.00 0.00 3.16
219 220 0.453793 TGACAAAACCACGGCAACTG 59.546 50.000 0.00 0.00 0.00 3.16
220 221 0.454196 GACAAAACCACGGCAACTGT 59.546 50.000 0.00 0.00 0.00 3.55
259 260 2.478547 TATGTTGCAATGCAGATGCG 57.521 45.000 18.91 0.00 46.76 4.73
283 284 4.455606 AGCTATGTGTTAAGATGAAGGGC 58.544 43.478 0.00 0.00 0.00 5.19
285 286 4.687219 GCTATGTGTTAAGATGAAGGGCCT 60.687 45.833 0.00 0.00 0.00 5.19
319 320 4.770010 CCCCTAGCTTTGAACCAATTTGTA 59.230 41.667 0.00 0.00 0.00 2.41
404 408 2.028420 TGATTGGATCACCTTGAGCG 57.972 50.000 0.00 0.00 32.73 5.03
414 418 2.300152 TCACCTTGAGCGAGTCTGATTT 59.700 45.455 0.00 0.00 0.00 2.17
415 419 3.070018 CACCTTGAGCGAGTCTGATTTT 58.930 45.455 0.00 0.00 0.00 1.82
416 420 4.021456 TCACCTTGAGCGAGTCTGATTTTA 60.021 41.667 0.00 0.00 0.00 1.52
423 427 7.525688 TGAGCGAGTCTGATTTTACAATAAG 57.474 36.000 0.00 0.00 0.00 1.73
426 430 8.324163 AGCGAGTCTGATTTTACAATAAGTTT 57.676 30.769 0.00 0.00 0.00 2.66
427 431 8.784043 AGCGAGTCTGATTTTACAATAAGTTTT 58.216 29.630 0.00 0.00 0.00 2.43
435 439 9.255304 TGATTTTACAATAAGTTTTCAGCAACC 57.745 29.630 0.00 0.00 0.00 3.77
443 447 9.346725 CAATAAGTTTTCAGCAACCTAGATTTC 57.653 33.333 0.00 0.00 0.00 2.17
453 457 4.798574 CAACCTAGATTTCCAACACAAGC 58.201 43.478 0.00 0.00 0.00 4.01
455 459 4.729868 ACCTAGATTTCCAACACAAGCTT 58.270 39.130 0.00 0.00 0.00 3.74
456 460 4.520492 ACCTAGATTTCCAACACAAGCTTG 59.480 41.667 24.84 24.84 0.00 4.01
474 478 3.181506 GCTTGAGCCCTCTTTGAATAACG 60.182 47.826 0.00 0.00 34.31 3.18
478 482 4.020039 TGAGCCCTCTTTGAATAACGGTAA 60.020 41.667 0.00 0.00 0.00 2.85
481 485 4.840271 CCCTCTTTGAATAACGGTAACCT 58.160 43.478 0.00 0.00 0.00 3.50
484 488 5.935789 CCTCTTTGAATAACGGTAACCTTCA 59.064 40.000 0.00 0.00 0.00 3.02
490 494 8.657074 TTGAATAACGGTAACCTTCATCATAG 57.343 34.615 0.00 0.00 0.00 2.23
494 498 2.143925 GGTAACCTTCATCATAGCCGC 58.856 52.381 0.00 0.00 0.00 6.53
505 509 2.805845 TCATAGCCGCGTTTAGAAGAC 58.194 47.619 4.92 0.00 0.00 3.01
522 526 2.357517 CGAGTGTGTGGGGCTGAC 60.358 66.667 0.00 0.00 0.00 3.51
523 527 2.828868 GAGTGTGTGGGGCTGACA 59.171 61.111 0.00 0.00 0.00 3.58
539 543 1.434622 GACATCCATGCCACAGCTCG 61.435 60.000 0.00 0.00 40.80 5.03
540 544 2.515523 ATCCATGCCACAGCTCGC 60.516 61.111 0.00 0.00 40.80 5.03
553 557 3.133014 CTCGCCCATGATCGTCCT 58.867 61.111 0.00 0.00 0.00 3.85
555 559 1.738346 CTCGCCCATGATCGTCCTGA 61.738 60.000 0.00 0.00 0.00 3.86
561 565 2.555199 CCATGATCGTCCTGAAGAACC 58.445 52.381 0.00 0.00 0.00 3.62
566 570 2.342648 GTCCTGAAGAACCGGCGT 59.657 61.111 6.01 0.00 0.00 5.68
574 578 1.782028 AAGAACCGGCGTTGAAGCAC 61.782 55.000 6.01 0.00 39.27 4.40
579 583 2.034879 CGGCGTTGAAGCACCTGAT 61.035 57.895 0.00 0.00 39.27 2.90
586 590 3.285484 GTTGAAGCACCTGATCCATCAT 58.715 45.455 0.00 0.00 36.02 2.45
605 609 6.040054 CCATCATGGAAGTAAGCATGATCAAA 59.960 38.462 0.00 0.00 40.96 2.69
606 610 7.255836 CCATCATGGAAGTAAGCATGATCAAAT 60.256 37.037 0.00 0.00 40.96 2.32
608 612 7.709947 TCATGGAAGTAAGCATGATCAAATTC 58.290 34.615 0.00 0.00 0.00 2.17
609 613 6.122850 TGGAAGTAAGCATGATCAAATTCG 57.877 37.500 0.00 0.00 0.00 3.34
611 615 6.543465 TGGAAGTAAGCATGATCAAATTCGAT 59.457 34.615 0.00 0.00 0.00 3.59
612 616 7.067372 TGGAAGTAAGCATGATCAAATTCGATT 59.933 33.333 0.00 0.00 0.00 3.34
613 617 7.377928 GGAAGTAAGCATGATCAAATTCGATTG 59.622 37.037 0.00 0.00 0.00 2.67
614 618 6.204359 AGTAAGCATGATCAAATTCGATTGC 58.796 36.000 0.00 2.13 31.90 3.56
655 669 5.465532 TGCTTCAGGTGCAATGATTTTTA 57.534 34.783 3.86 0.00 37.51 1.52
660 674 3.367630 CAGGTGCAATGATTTTTAACGCC 59.632 43.478 0.00 0.00 0.00 5.68
661 675 2.344142 GGTGCAATGATTTTTAACGCCG 59.656 45.455 0.00 0.00 0.00 6.46
665 679 3.241646 GCAATGATTTTTAACGCCGCTTC 60.242 43.478 0.00 0.00 0.00 3.86
691 707 2.787994 AGTTTGCAGTGAGGGATTGAG 58.212 47.619 0.00 0.00 0.00 3.02
701 717 2.225091 TGAGGGATTGAGTGGCAAATGT 60.225 45.455 0.00 0.00 40.48 2.71
709 725 2.032799 TGAGTGGCAAATGTCGTGTTTC 59.967 45.455 0.00 0.00 0.00 2.78
715 731 3.490078 GGCAAATGTCGTGTTTCTTGGAA 60.490 43.478 0.00 0.00 0.00 3.53
719 735 2.980568 TGTCGTGTTTCTTGGAAGTGT 58.019 42.857 0.00 0.00 0.00 3.55
730 746 3.882888 TCTTGGAAGTGTCATGGTTTCAC 59.117 43.478 0.00 0.00 0.00 3.18
739 755 3.631686 TGTCATGGTTTCACCTTTCACAG 59.368 43.478 0.00 0.00 39.58 3.66
756 772 2.412421 CAGTTTCTCTGCTTTGCCAC 57.588 50.000 0.00 0.00 37.36 5.01
767 783 1.608542 GCTTTGCCACCAAATGCATCA 60.609 47.619 0.00 0.00 39.98 3.07
768 784 2.937873 GCTTTGCCACCAAATGCATCAT 60.938 45.455 0.00 0.00 39.98 2.45
804 2489 7.016153 TGTCTGTATTTACCCTTTGAGTGAT 57.984 36.000 0.00 0.00 0.00 3.06
826 2511 7.117812 GTGATACAACTAGCACACATACTTTGT 59.882 37.037 0.00 0.00 38.85 2.83
853 2583 8.825745 GCCATTGTGTCAAATTCTTTTCTTTTA 58.174 29.630 0.00 0.00 0.00 1.52
857 2587 7.254852 TGTGTCAAATTCTTTTCTTTTAGCGT 58.745 30.769 0.00 0.00 0.00 5.07
858 2588 7.219917 TGTGTCAAATTCTTTTCTTTTAGCGTG 59.780 33.333 0.00 0.00 0.00 5.34
859 2589 6.695278 TGTCAAATTCTTTTCTTTTAGCGTGG 59.305 34.615 0.00 0.00 0.00 4.94
860 2590 6.915843 GTCAAATTCTTTTCTTTTAGCGTGGA 59.084 34.615 0.00 0.00 0.00 4.02
861 2591 7.434013 GTCAAATTCTTTTCTTTTAGCGTGGAA 59.566 33.333 0.00 0.00 0.00 3.53
862 2592 7.976734 TCAAATTCTTTTCTTTTAGCGTGGAAA 59.023 29.630 0.00 0.00 0.00 3.13
863 2593 8.764287 CAAATTCTTTTCTTTTAGCGTGGAAAT 58.236 29.630 0.00 0.00 0.00 2.17
864 2594 9.974980 AAATTCTTTTCTTTTAGCGTGGAAATA 57.025 25.926 0.00 0.00 0.00 1.40
865 2595 8.965986 ATTCTTTTCTTTTAGCGTGGAAATAC 57.034 30.769 0.00 0.00 0.00 1.89
866 2596 6.905578 TCTTTTCTTTTAGCGTGGAAATACC 58.094 36.000 0.00 0.00 39.54 2.73
867 2597 5.632244 TTTCTTTTAGCGTGGAAATACCC 57.368 39.130 0.00 0.00 38.00 3.69
868 2598 3.264104 TCTTTTAGCGTGGAAATACCCG 58.736 45.455 0.00 0.00 38.00 5.28
869 2599 2.766345 TTTAGCGTGGAAATACCCGT 57.234 45.000 0.00 0.00 38.00 5.28
870 2600 2.012937 TTAGCGTGGAAATACCCGTG 57.987 50.000 0.00 0.00 38.00 4.94
871 2601 0.460635 TAGCGTGGAAATACCCGTGC 60.461 55.000 0.00 0.00 38.00 5.34
872 2602 1.743995 GCGTGGAAATACCCGTGCT 60.744 57.895 0.00 0.00 38.00 4.40
873 2603 1.303091 GCGTGGAAATACCCGTGCTT 61.303 55.000 0.00 0.00 38.00 3.91
874 2604 1.161843 CGTGGAAATACCCGTGCTTT 58.838 50.000 0.00 0.00 38.00 3.51
875 2605 2.348660 CGTGGAAATACCCGTGCTTTA 58.651 47.619 0.00 0.00 38.00 1.85
876 2606 2.940410 CGTGGAAATACCCGTGCTTTAT 59.060 45.455 0.00 0.00 38.00 1.40
877 2607 3.375922 CGTGGAAATACCCGTGCTTTATT 59.624 43.478 0.00 0.00 38.00 1.40
878 2608 4.142556 CGTGGAAATACCCGTGCTTTATTT 60.143 41.667 0.00 0.00 38.00 1.40
879 2609 5.620429 CGTGGAAATACCCGTGCTTTATTTT 60.620 40.000 0.00 0.00 38.00 1.82
880 2610 6.160684 GTGGAAATACCCGTGCTTTATTTTT 58.839 36.000 0.00 0.00 38.00 1.94
903 2633 1.545582 AGAAATGGAAATGCCCGTGTG 59.454 47.619 0.00 0.00 34.97 3.82
1028 2771 0.474273 TCCTAACCCTTTCCCGTGGT 60.474 55.000 0.00 0.00 0.00 4.16
1038 2781 3.314331 CCCGTGGTCTCCTGCTGT 61.314 66.667 0.00 0.00 0.00 4.40
1040 2783 1.541310 CCCGTGGTCTCCTGCTGTAA 61.541 60.000 0.00 0.00 0.00 2.41
1114 2861 1.280457 AGAAGAAATCCGCTCCCACT 58.720 50.000 0.00 0.00 0.00 4.00
1312 3059 2.117156 CGACATCTACGACCCCGGT 61.117 63.158 0.00 0.00 40.78 5.28
1731 3826 2.048222 CTTCTCGCCGGACAGCAA 60.048 61.111 5.05 0.00 0.00 3.91
1756 3851 0.323725 GGCAGATCTCCCCAAAAGCA 60.324 55.000 0.00 0.00 0.00 3.91
1757 3852 0.813821 GCAGATCTCCCCAAAAGCAC 59.186 55.000 0.00 0.00 0.00 4.40
1766 3861 3.659092 CAAAAGCACCGCGCCTGA 61.659 61.111 0.00 0.00 44.04 3.86
1829 3924 1.974957 TCTACTGGGCAACTGTAAGCA 59.025 47.619 7.34 0.00 37.60 3.91
1846 3944 3.976793 AGCAAAGCCGATATTCATGTG 57.023 42.857 0.00 0.00 0.00 3.21
1847 3945 2.033801 AGCAAAGCCGATATTCATGTGC 59.966 45.455 0.00 0.00 0.00 4.57
1848 3946 2.033801 GCAAAGCCGATATTCATGTGCT 59.966 45.455 0.00 0.00 0.00 4.40
1849 3947 3.624900 CAAAGCCGATATTCATGTGCTG 58.375 45.455 0.00 0.00 0.00 4.41
1850 3948 2.916702 AGCCGATATTCATGTGCTGA 57.083 45.000 0.00 0.00 0.00 4.26
1983 4096 2.681706 CGCATCTGAACTCACTCTTGT 58.318 47.619 0.00 0.00 0.00 3.16
1995 4108 1.400142 CACTCTTGTTGTTTGCGTCCA 59.600 47.619 0.00 0.00 0.00 4.02
2030 4149 4.410492 GATGGTGTCGATAAATGGATGC 57.590 45.455 0.00 0.00 0.00 3.91
2031 4150 2.571212 TGGTGTCGATAAATGGATGCC 58.429 47.619 0.00 0.00 0.00 4.40
2032 4151 1.531149 GGTGTCGATAAATGGATGCCG 59.469 52.381 0.00 0.00 0.00 5.69
2033 4152 2.479837 GTGTCGATAAATGGATGCCGA 58.520 47.619 0.00 0.00 0.00 5.54
2034 4153 2.869801 GTGTCGATAAATGGATGCCGAA 59.130 45.455 0.00 0.00 0.00 4.30
2035 4154 2.869801 TGTCGATAAATGGATGCCGAAC 59.130 45.455 0.00 0.00 0.00 3.95
2036 4155 2.869801 GTCGATAAATGGATGCCGAACA 59.130 45.455 0.00 0.00 0.00 3.18
2099 4233 4.906618 ACAGTTTGTAGATCGTTTCCCAT 58.093 39.130 0.00 0.00 0.00 4.00
2101 4235 4.695455 CAGTTTGTAGATCGTTTCCCATGT 59.305 41.667 0.00 0.00 0.00 3.21
2141 4287 1.815613 TCGGTGGCATTGTGTATTTGG 59.184 47.619 0.00 0.00 0.00 3.28
2304 4463 3.252974 AGGCAATAAGGTGAACTCTCG 57.747 47.619 0.00 0.00 0.00 4.04
2311 4470 1.516603 GGTGAACTCTCGCGGCTAC 60.517 63.158 6.13 0.00 32.47 3.58
2398 7312 6.374333 TGCAGATATCACCTTTTCTGTTAACC 59.626 38.462 5.32 0.00 38.26 2.85
2686 7766 6.680148 ATATATATATATGCCACGGCCACA 57.320 37.500 13.42 0.00 41.09 4.17
2696 7776 1.528076 ACGGCCACACATTCTGCAA 60.528 52.632 2.24 0.00 0.00 4.08
2725 7808 8.316497 TGCATTTATTTATTTCCCTGGATTCA 57.684 30.769 0.00 0.00 0.00 2.57
2744 7827 3.405831 TCATTTTCCTCTGTGTCTGCTG 58.594 45.455 0.00 0.00 0.00 4.41
2886 7970 2.273179 TGGAGTTAGCACGTCGCCT 61.273 57.895 6.39 0.00 44.04 5.52
3006 8090 3.923864 TTGAGCGTGCCCGTGTCT 61.924 61.111 0.00 0.00 36.15 3.41
3077 8195 0.535780 CTTTCCTCAGCACAGGCACA 60.536 55.000 0.00 0.00 44.61 4.57
3134 8263 2.159000 CCGTGGTCAGGGTTTAGATACC 60.159 54.545 1.84 0.00 37.47 2.73
3159 8289 4.008453 CCCATGGGTAGGGCATCT 57.992 61.111 23.93 0.00 39.96 2.90
3407 9661 5.064707 GTCATGTGCTATCCGTTGTGTTAAT 59.935 40.000 0.00 0.00 0.00 1.40
3442 9698 9.988350 GTTATTTACTTATGTGTGATTGTCAGG 57.012 33.333 0.00 0.00 0.00 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.792794 GCGACTTGGCTAAGCTAGTACTC 60.793 52.174 10.10 0.00 37.43 2.59
1 2 2.099427 GCGACTTGGCTAAGCTAGTACT 59.901 50.000 10.10 0.00 37.43 2.73
2 3 2.159282 TGCGACTTGGCTAAGCTAGTAC 60.159 50.000 10.10 0.00 37.43 2.73
3 4 2.097036 TGCGACTTGGCTAAGCTAGTA 58.903 47.619 10.10 0.00 37.43 1.82
4 5 0.895530 TGCGACTTGGCTAAGCTAGT 59.104 50.000 10.10 0.00 37.43 2.57
5 6 1.281899 GTGCGACTTGGCTAAGCTAG 58.718 55.000 10.10 2.72 37.43 3.42
6 7 0.108329 GGTGCGACTTGGCTAAGCTA 60.108 55.000 10.10 0.00 37.43 3.32
7 8 1.376037 GGTGCGACTTGGCTAAGCT 60.376 57.895 10.10 0.00 37.43 3.74
8 9 2.399356 GGGTGCGACTTGGCTAAGC 61.399 63.158 10.10 2.10 37.43 3.09
9 10 1.745489 GGGGTGCGACTTGGCTAAG 60.745 63.158 8.47 8.47 39.86 2.18
10 11 0.905809 TAGGGGTGCGACTTGGCTAA 60.906 55.000 0.00 0.00 0.00 3.09
11 12 0.689745 ATAGGGGTGCGACTTGGCTA 60.690 55.000 0.00 0.00 0.00 3.93
12 13 0.689745 TATAGGGGTGCGACTTGGCT 60.690 55.000 0.00 0.00 0.00 4.75
13 14 0.179468 TTATAGGGGTGCGACTTGGC 59.821 55.000 0.00 0.00 0.00 4.52
14 15 2.104111 TGATTATAGGGGTGCGACTTGG 59.896 50.000 0.00 0.00 0.00 3.61
15 16 3.469008 TGATTATAGGGGTGCGACTTG 57.531 47.619 0.00 0.00 0.00 3.16
16 17 3.709653 TCTTGATTATAGGGGTGCGACTT 59.290 43.478 0.00 0.00 0.00 3.01
17 18 3.305720 TCTTGATTATAGGGGTGCGACT 58.694 45.455 0.00 0.00 0.00 4.18
18 19 3.746045 TCTTGATTATAGGGGTGCGAC 57.254 47.619 0.00 0.00 0.00 5.19
19 20 3.260884 GGATCTTGATTATAGGGGTGCGA 59.739 47.826 0.00 0.00 0.00 5.10
20 21 3.600388 GGATCTTGATTATAGGGGTGCG 58.400 50.000 0.00 0.00 0.00 5.34
21 22 3.330701 TGGGATCTTGATTATAGGGGTGC 59.669 47.826 0.00 0.00 0.00 5.01
22 23 5.582950 TTGGGATCTTGATTATAGGGGTG 57.417 43.478 0.00 0.00 0.00 4.61
23 24 5.435041 TGTTTGGGATCTTGATTATAGGGGT 59.565 40.000 0.00 0.00 0.00 4.95
24 25 5.952387 TGTTTGGGATCTTGATTATAGGGG 58.048 41.667 0.00 0.00 0.00 4.79
25 26 9.586732 TTATTGTTTGGGATCTTGATTATAGGG 57.413 33.333 0.00 0.00 0.00 3.53
29 30 9.659135 TGGATTATTGTTTGGGATCTTGATTAT 57.341 29.630 0.00 0.00 0.00 1.28
30 31 9.659135 ATGGATTATTGTTTGGGATCTTGATTA 57.341 29.630 0.00 0.00 0.00 1.75
31 32 7.976414 TGGATTATTGTTTGGGATCTTGATT 57.024 32.000 0.00 0.00 0.00 2.57
32 33 7.785985 TGATGGATTATTGTTTGGGATCTTGAT 59.214 33.333 0.00 0.00 0.00 2.57
33 34 7.124721 TGATGGATTATTGTTTGGGATCTTGA 58.875 34.615 0.00 0.00 0.00 3.02
34 35 7.350744 TGATGGATTATTGTTTGGGATCTTG 57.649 36.000 0.00 0.00 0.00 3.02
35 36 7.418254 GCTTGATGGATTATTGTTTGGGATCTT 60.418 37.037 0.00 0.00 0.00 2.40
36 37 6.041296 GCTTGATGGATTATTGTTTGGGATCT 59.959 38.462 0.00 0.00 0.00 2.75
37 38 6.183360 TGCTTGATGGATTATTGTTTGGGATC 60.183 38.462 0.00 0.00 0.00 3.36
38 39 5.662208 TGCTTGATGGATTATTGTTTGGGAT 59.338 36.000 0.00 0.00 0.00 3.85
39 40 5.022122 TGCTTGATGGATTATTGTTTGGGA 58.978 37.500 0.00 0.00 0.00 4.37
40 41 5.341872 TGCTTGATGGATTATTGTTTGGG 57.658 39.130 0.00 0.00 0.00 4.12
41 42 5.127519 TCCTGCTTGATGGATTATTGTTTGG 59.872 40.000 0.00 0.00 0.00 3.28
42 43 6.211587 TCCTGCTTGATGGATTATTGTTTG 57.788 37.500 0.00 0.00 0.00 2.93
43 44 6.855763 TTCCTGCTTGATGGATTATTGTTT 57.144 33.333 0.00 0.00 31.76 2.83
44 45 6.855763 TTTCCTGCTTGATGGATTATTGTT 57.144 33.333 0.00 0.00 31.76 2.83
45 46 7.232127 CCTATTTCCTGCTTGATGGATTATTGT 59.768 37.037 0.00 0.00 31.76 2.71
46 47 7.600065 CCTATTTCCTGCTTGATGGATTATTG 58.400 38.462 0.00 0.00 31.76 1.90
47 48 6.210185 GCCTATTTCCTGCTTGATGGATTATT 59.790 38.462 0.00 0.00 31.76 1.40
48 49 5.713861 GCCTATTTCCTGCTTGATGGATTAT 59.286 40.000 0.00 0.00 31.76 1.28
49 50 5.072741 GCCTATTTCCTGCTTGATGGATTA 58.927 41.667 0.00 0.00 31.76 1.75
50 51 3.893813 GCCTATTTCCTGCTTGATGGATT 59.106 43.478 0.00 0.00 31.76 3.01
51 52 3.139770 AGCCTATTTCCTGCTTGATGGAT 59.860 43.478 0.00 0.00 31.76 3.41
52 53 2.511218 AGCCTATTTCCTGCTTGATGGA 59.489 45.455 0.00 0.00 29.17 3.41
53 54 2.941480 AGCCTATTTCCTGCTTGATGG 58.059 47.619 0.00 0.00 29.17 3.51
54 55 6.150140 GGTAATAGCCTATTTCCTGCTTGATG 59.850 42.308 11.67 0.00 36.57 3.07
55 56 6.044871 AGGTAATAGCCTATTTCCTGCTTGAT 59.955 38.462 18.64 0.00 42.23 2.57
56 57 5.369699 AGGTAATAGCCTATTTCCTGCTTGA 59.630 40.000 18.64 0.00 42.23 3.02
57 58 5.625150 AGGTAATAGCCTATTTCCTGCTTG 58.375 41.667 18.64 0.00 42.23 4.01
58 59 5.221945 GGAGGTAATAGCCTATTTCCTGCTT 60.222 44.000 24.76 6.79 44.72 3.91
59 60 4.287326 GGAGGTAATAGCCTATTTCCTGCT 59.713 45.833 24.76 7.08 44.72 4.24
60 61 4.041691 TGGAGGTAATAGCCTATTTCCTGC 59.958 45.833 25.08 25.08 46.70 4.85
61 62 5.513267 GGTGGAGGTAATAGCCTATTTCCTG 60.513 48.000 22.83 0.00 43.36 3.86
62 63 4.597940 GGTGGAGGTAATAGCCTATTTCCT 59.402 45.833 19.21 19.21 45.18 3.36
63 64 4.562963 CGGTGGAGGTAATAGCCTATTTCC 60.563 50.000 11.13 11.13 39.34 3.13
64 65 4.566987 CGGTGGAGGTAATAGCCTATTTC 58.433 47.826 1.63 0.00 39.34 2.17
65 66 3.244457 GCGGTGGAGGTAATAGCCTATTT 60.244 47.826 1.63 0.00 39.34 1.40
66 67 2.302157 GCGGTGGAGGTAATAGCCTATT 59.698 50.000 2.01 2.01 39.34 1.73
67 68 1.900486 GCGGTGGAGGTAATAGCCTAT 59.100 52.381 0.00 0.00 39.34 2.57
68 69 1.335145 GCGGTGGAGGTAATAGCCTA 58.665 55.000 0.00 0.00 39.34 3.93
69 70 1.745320 CGCGGTGGAGGTAATAGCCT 61.745 60.000 0.00 0.00 42.53 4.58
70 71 1.300697 CGCGGTGGAGGTAATAGCC 60.301 63.158 0.00 0.00 0.00 3.93
71 72 0.318784 CTCGCGGTGGAGGTAATAGC 60.319 60.000 6.13 0.00 0.00 2.97
72 73 0.314302 CCTCGCGGTGGAGGTAATAG 59.686 60.000 6.13 0.00 46.97 1.73
73 74 2.422303 CCTCGCGGTGGAGGTAATA 58.578 57.895 6.13 0.00 46.97 0.98
74 75 3.217231 CCTCGCGGTGGAGGTAAT 58.783 61.111 6.13 0.00 46.97 1.89
89 90 3.876255 TTACCCAGGTTCGGCCCCT 62.876 63.158 0.00 0.00 38.26 4.79
90 91 2.909549 TTTACCCAGGTTCGGCCCC 61.910 63.158 0.00 0.00 38.26 5.80
91 92 1.676635 GTTTACCCAGGTTCGGCCC 60.677 63.158 0.00 0.00 38.26 5.80
92 93 0.675837 GAGTTTACCCAGGTTCGGCC 60.676 60.000 0.00 0.00 37.58 6.13
93 94 1.017701 CGAGTTTACCCAGGTTCGGC 61.018 60.000 0.00 0.00 0.00 5.54
94 95 0.319405 ACGAGTTTACCCAGGTTCGG 59.681 55.000 12.00 0.00 31.40 4.30
95 96 1.269936 ACACGAGTTTACCCAGGTTCG 60.270 52.381 7.02 7.02 32.82 3.95
96 97 2.036862 AGACACGAGTTTACCCAGGTTC 59.963 50.000 0.00 0.00 0.00 3.62
97 98 2.036862 GAGACACGAGTTTACCCAGGTT 59.963 50.000 0.00 0.00 0.00 3.50
98 99 1.617357 GAGACACGAGTTTACCCAGGT 59.383 52.381 0.00 0.00 0.00 4.00
99 100 1.893801 AGAGACACGAGTTTACCCAGG 59.106 52.381 0.00 0.00 0.00 4.45
100 101 2.414293 CGAGAGACACGAGTTTACCCAG 60.414 54.545 0.00 0.00 0.00 4.45
101 102 1.538512 CGAGAGACACGAGTTTACCCA 59.461 52.381 0.00 0.00 0.00 4.51
102 103 1.808945 TCGAGAGACACGAGTTTACCC 59.191 52.381 0.00 0.00 34.85 3.69
103 104 3.761311 ATCGAGAGACACGAGTTTACC 57.239 47.619 0.00 0.00 46.97 2.85
104 105 4.097012 GGAATCGAGAGACACGAGTTTAC 58.903 47.826 0.00 0.00 46.97 2.01
105 106 3.181513 CGGAATCGAGAGACACGAGTTTA 60.182 47.826 0.00 0.00 46.97 2.01
106 107 2.414293 CGGAATCGAGAGACACGAGTTT 60.414 50.000 0.00 0.00 46.97 2.66
107 108 1.130749 CGGAATCGAGAGACACGAGTT 59.869 52.381 0.00 0.00 46.97 3.01
108 109 0.727970 CGGAATCGAGAGACACGAGT 59.272 55.000 0.00 0.00 46.97 4.18
109 110 1.007580 TCGGAATCGAGAGACACGAG 58.992 55.000 0.00 0.00 46.97 4.18
110 111 3.148340 TCGGAATCGAGAGACACGA 57.852 52.632 0.00 0.00 46.97 4.35
120 121 0.461339 AACGGGGTTGATCGGAATCG 60.461 55.000 0.00 0.00 34.39 3.34
121 122 1.296727 GAACGGGGTTGATCGGAATC 58.703 55.000 0.00 0.00 0.00 2.52
122 123 0.616371 TGAACGGGGTTGATCGGAAT 59.384 50.000 0.00 0.00 0.00 3.01
123 124 0.397187 TTGAACGGGGTTGATCGGAA 59.603 50.000 0.00 0.00 0.00 4.30
124 125 0.036765 CTTGAACGGGGTTGATCGGA 60.037 55.000 0.00 0.00 0.00 4.55
125 126 1.644786 GCTTGAACGGGGTTGATCGG 61.645 60.000 0.00 0.00 0.00 4.18
126 127 0.673644 AGCTTGAACGGGGTTGATCG 60.674 55.000 0.00 0.00 0.00 3.69
127 128 2.007608 GTAGCTTGAACGGGGTTGATC 58.992 52.381 0.00 0.00 0.00 2.92
128 129 1.628846 AGTAGCTTGAACGGGGTTGAT 59.371 47.619 0.00 0.00 0.00 2.57
129 130 1.053424 AGTAGCTTGAACGGGGTTGA 58.947 50.000 0.00 0.00 0.00 3.18
130 131 2.344025 GTAGTAGCTTGAACGGGGTTG 58.656 52.381 0.00 0.00 0.00 3.77
131 132 1.277273 GGTAGTAGCTTGAACGGGGTT 59.723 52.381 0.00 0.00 0.00 4.11
132 133 0.900421 GGTAGTAGCTTGAACGGGGT 59.100 55.000 0.00 0.00 0.00 4.95
133 134 1.192428 AGGTAGTAGCTTGAACGGGG 58.808 55.000 0.00 0.00 0.00 5.73
134 135 3.712091 CTAGGTAGTAGCTTGAACGGG 57.288 52.381 7.27 0.00 0.00 5.28
144 145 1.068194 GCCATCGCAGCTAGGTAGTAG 60.068 57.143 0.00 0.00 34.03 2.57
145 146 0.959553 GCCATCGCAGCTAGGTAGTA 59.040 55.000 0.00 0.00 34.03 1.82
146 147 1.742768 GCCATCGCAGCTAGGTAGT 59.257 57.895 0.00 0.00 34.03 2.73
147 148 1.005630 GGCCATCGCAGCTAGGTAG 60.006 63.158 0.00 0.00 36.38 3.18
148 149 1.457643 AGGCCATCGCAGCTAGGTA 60.458 57.895 5.01 0.00 36.38 3.08
149 150 2.765807 AGGCCATCGCAGCTAGGT 60.766 61.111 5.01 0.00 36.38 3.08
150 151 2.030262 GAGGCCATCGCAGCTAGG 59.970 66.667 5.01 0.00 36.38 3.02
151 152 1.593750 GTGAGGCCATCGCAGCTAG 60.594 63.158 5.01 0.00 38.38 3.42
152 153 2.501128 GTGAGGCCATCGCAGCTA 59.499 61.111 5.01 0.00 38.38 3.32
153 154 4.827087 CGTGAGGCCATCGCAGCT 62.827 66.667 5.01 0.00 38.41 4.24
155 156 2.004808 TAGACGTGAGGCCATCGCAG 62.005 60.000 5.01 5.90 43.69 5.18
156 157 1.600511 TTAGACGTGAGGCCATCGCA 61.601 55.000 5.01 0.00 43.69 5.10
157 158 0.872021 CTTAGACGTGAGGCCATCGC 60.872 60.000 5.01 5.57 43.69 4.58
158 159 0.456221 ACTTAGACGTGAGGCCATCG 59.544 55.000 5.01 9.22 43.69 3.84
159 160 1.202428 GGACTTAGACGTGAGGCCATC 60.202 57.143 5.01 0.00 43.69 3.51
160 161 0.824759 GGACTTAGACGTGAGGCCAT 59.175 55.000 5.01 0.00 43.69 4.40
161 162 0.251653 AGGACTTAGACGTGAGGCCA 60.252 55.000 15.34 0.00 43.94 5.36
162 163 0.896226 AAGGACTTAGACGTGAGGCC 59.104 55.000 6.91 6.91 43.69 5.19
163 164 2.745515 AAAGGACTTAGACGTGAGGC 57.254 50.000 0.00 0.00 42.06 4.70
164 165 3.673809 CGAAAAAGGACTTAGACGTGAGG 59.326 47.826 0.00 0.00 0.00 3.86
165 166 4.543692 TCGAAAAAGGACTTAGACGTGAG 58.456 43.478 0.00 0.00 0.00 3.51
166 167 4.276678 TCTCGAAAAAGGACTTAGACGTGA 59.723 41.667 0.00 0.00 0.00 4.35
167 168 4.543692 TCTCGAAAAAGGACTTAGACGTG 58.456 43.478 0.00 0.00 0.00 4.49
168 169 4.843220 TCTCGAAAAAGGACTTAGACGT 57.157 40.909 0.00 0.00 0.00 4.34
169 170 4.980434 TGTTCTCGAAAAAGGACTTAGACG 59.020 41.667 0.00 0.00 0.00 4.18
170 171 6.869388 AGATGTTCTCGAAAAAGGACTTAGAC 59.131 38.462 0.00 0.00 0.00 2.59
171 172 6.868864 CAGATGTTCTCGAAAAAGGACTTAGA 59.131 38.462 0.00 0.00 0.00 2.10
172 173 6.401581 GCAGATGTTCTCGAAAAAGGACTTAG 60.402 42.308 0.00 0.00 0.00 2.18
173 174 5.408604 GCAGATGTTCTCGAAAAAGGACTTA 59.591 40.000 0.00 0.00 0.00 2.24
174 175 4.214332 GCAGATGTTCTCGAAAAAGGACTT 59.786 41.667 0.00 0.00 0.00 3.01
175 176 3.748568 GCAGATGTTCTCGAAAAAGGACT 59.251 43.478 0.00 0.00 0.00 3.85
176 177 3.120165 GGCAGATGTTCTCGAAAAAGGAC 60.120 47.826 0.00 0.00 0.00 3.85
177 178 3.074412 GGCAGATGTTCTCGAAAAAGGA 58.926 45.455 0.00 0.00 0.00 3.36
178 179 2.159653 CGGCAGATGTTCTCGAAAAAGG 60.160 50.000 0.00 0.00 0.00 3.11
179 180 2.480419 ACGGCAGATGTTCTCGAAAAAG 59.520 45.455 0.00 0.00 0.00 2.27
180 181 2.223144 CACGGCAGATGTTCTCGAAAAA 59.777 45.455 0.00 0.00 0.00 1.94
181 182 1.798223 CACGGCAGATGTTCTCGAAAA 59.202 47.619 0.00 0.00 0.00 2.29
182 183 1.000394 TCACGGCAGATGTTCTCGAAA 60.000 47.619 0.00 0.00 0.00 3.46
183 184 0.601057 TCACGGCAGATGTTCTCGAA 59.399 50.000 0.00 0.00 0.00 3.71
184 185 0.109272 GTCACGGCAGATGTTCTCGA 60.109 55.000 0.00 0.00 0.00 4.04
185 186 0.388520 TGTCACGGCAGATGTTCTCG 60.389 55.000 0.00 0.00 0.00 4.04
186 187 1.795768 TTGTCACGGCAGATGTTCTC 58.204 50.000 0.00 0.00 0.00 2.87
187 188 2.254546 TTTGTCACGGCAGATGTTCT 57.745 45.000 0.00 0.00 0.00 3.01
188 189 2.604614 GGTTTTGTCACGGCAGATGTTC 60.605 50.000 0.00 0.00 0.00 3.18
189 190 1.336755 GGTTTTGTCACGGCAGATGTT 59.663 47.619 0.00 0.00 0.00 2.71
190 191 0.951558 GGTTTTGTCACGGCAGATGT 59.048 50.000 0.00 0.00 0.00 3.06
191 192 0.950836 TGGTTTTGTCACGGCAGATG 59.049 50.000 0.00 0.00 0.00 2.90
192 193 0.951558 GTGGTTTTGTCACGGCAGAT 59.048 50.000 0.00 0.00 0.00 2.90
193 194 2.399856 GTGGTTTTGTCACGGCAGA 58.600 52.632 0.00 0.00 0.00 4.26
199 200 0.454196 AGTTGCCGTGGTTTTGTCAC 59.546 50.000 0.00 0.00 0.00 3.67
200 201 0.453793 CAGTTGCCGTGGTTTTGTCA 59.546 50.000 0.00 0.00 0.00 3.58
201 202 0.454196 ACAGTTGCCGTGGTTTTGTC 59.546 50.000 0.00 0.00 0.00 3.18
202 203 0.172352 CACAGTTGCCGTGGTTTTGT 59.828 50.000 0.00 0.00 0.00 2.83
203 204 1.145162 GCACAGTTGCCGTGGTTTTG 61.145 55.000 0.00 0.00 43.66 2.44
204 205 1.140804 GCACAGTTGCCGTGGTTTT 59.859 52.632 0.00 0.00 43.66 2.43
205 206 2.804856 GCACAGTTGCCGTGGTTT 59.195 55.556 0.00 0.00 43.66 3.27
232 233 4.581409 TCTGCATTGCAACATATATGTGCT 59.419 37.500 26.31 11.33 41.61 4.40
237 238 4.380128 CCGCATCTGCATTGCAACATATAT 60.380 41.667 13.18 0.00 38.41 0.86
243 244 0.524816 CTCCGCATCTGCATTGCAAC 60.525 55.000 13.18 2.03 38.41 4.17
252 253 1.945387 AACACATAGCTCCGCATCTG 58.055 50.000 0.00 0.00 0.00 2.90
259 260 5.059833 CCCTTCATCTTAACACATAGCTCC 58.940 45.833 0.00 0.00 0.00 4.70
283 284 3.341469 TAGGGGGTGGGGCAGTAGG 62.341 68.421 0.00 0.00 0.00 3.18
285 286 2.371043 CTAGGGGGTGGGGCAGTA 59.629 66.667 0.00 0.00 0.00 2.74
291 292 0.323451 GTTCAAAGCTAGGGGGTGGG 60.323 60.000 0.00 0.00 0.00 4.61
298 299 6.208599 TCCTTACAAATTGGTTCAAAGCTAGG 59.791 38.462 0.00 0.00 0.00 3.02
387 391 1.556911 ACTCGCTCAAGGTGATCCAAT 59.443 47.619 0.00 0.00 35.89 3.16
399 403 7.097192 ACTTATTGTAAAATCAGACTCGCTCA 58.903 34.615 0.00 0.00 0.00 4.26
414 418 8.911918 TCTAGGTTGCTGAAAACTTATTGTAA 57.088 30.769 0.00 0.00 36.99 2.41
415 419 9.515226 AATCTAGGTTGCTGAAAACTTATTGTA 57.485 29.630 0.00 0.00 36.99 2.41
416 420 8.409358 AATCTAGGTTGCTGAAAACTTATTGT 57.591 30.769 0.00 0.00 36.99 2.71
423 427 5.705609 TGGAAATCTAGGTTGCTGAAAAC 57.294 39.130 0.00 0.00 0.00 2.43
426 430 4.518970 GTGTTGGAAATCTAGGTTGCTGAA 59.481 41.667 0.00 0.00 0.00 3.02
427 431 4.072131 GTGTTGGAAATCTAGGTTGCTGA 58.928 43.478 0.00 0.00 0.00 4.26
434 438 4.761739 TCAAGCTTGTGTTGGAAATCTAGG 59.238 41.667 25.19 0.00 0.00 3.02
435 439 5.618640 GCTCAAGCTTGTGTTGGAAATCTAG 60.619 44.000 25.19 11.72 38.21 2.43
443 447 0.825010 AGGGCTCAAGCTTGTGTTGG 60.825 55.000 25.19 12.48 41.70 3.77
453 457 3.375299 CCGTTATTCAAAGAGGGCTCAAG 59.625 47.826 0.00 0.00 0.00 3.02
455 459 2.304761 ACCGTTATTCAAAGAGGGCTCA 59.695 45.455 0.00 0.00 0.00 4.26
456 460 2.987232 ACCGTTATTCAAAGAGGGCTC 58.013 47.619 0.00 0.00 0.00 4.70
474 478 2.143925 GCGGCTATGATGAAGGTTACC 58.856 52.381 0.00 0.00 0.00 2.85
478 482 0.178068 AACGCGGCTATGATGAAGGT 59.822 50.000 12.47 0.00 0.00 3.50
481 485 3.446310 TCTAAACGCGGCTATGATGAA 57.554 42.857 12.47 0.00 0.00 2.57
484 488 3.381949 GTCTTCTAAACGCGGCTATGAT 58.618 45.455 12.47 0.00 0.00 2.45
490 494 0.731855 ACTCGTCTTCTAAACGCGGC 60.732 55.000 12.47 0.00 39.90 6.53
494 498 2.724690 CCACACACTCGTCTTCTAAACG 59.275 50.000 0.00 0.00 41.39 3.60
505 509 2.357517 GTCAGCCCCACACACTCG 60.358 66.667 0.00 0.00 0.00 4.18
522 526 2.831366 GCGAGCTGTGGCATGGATG 61.831 63.158 0.00 0.00 41.70 3.51
523 527 2.515523 GCGAGCTGTGGCATGGAT 60.516 61.111 0.00 0.00 41.70 3.41
539 543 0.465705 TCTTCAGGACGATCATGGGC 59.534 55.000 0.00 0.00 0.00 5.36
540 544 2.555199 GTTCTTCAGGACGATCATGGG 58.445 52.381 0.00 0.00 0.00 4.00
553 557 1.503818 GCTTCAACGCCGGTTCTTCA 61.504 55.000 1.90 0.00 32.98 3.02
555 559 1.525077 TGCTTCAACGCCGGTTCTT 60.525 52.632 1.90 0.00 32.98 2.52
561 565 1.970917 GATCAGGTGCTTCAACGCCG 61.971 60.000 0.00 0.00 45.23 6.46
566 570 3.284617 CATGATGGATCAGGTGCTTCAA 58.715 45.455 0.00 0.00 40.64 2.69
579 583 4.776435 TCATGCTTACTTCCATGATGGA 57.224 40.909 10.75 10.75 46.61 3.41
586 590 5.879777 TCGAATTTGATCATGCTTACTTCCA 59.120 36.000 0.00 0.00 0.00 3.53
593 597 5.001237 TGCAATCGAATTTGATCATGCTT 57.999 34.783 23.62 3.37 34.62 3.91
596 600 5.685954 CCTCTTGCAATCGAATTTGATCATG 59.314 40.000 8.68 5.91 0.00 3.07
598 602 4.701651 ACCTCTTGCAATCGAATTTGATCA 59.298 37.500 8.68 1.17 0.00 2.92
599 603 5.240713 ACCTCTTGCAATCGAATTTGATC 57.759 39.130 8.68 0.00 0.00 2.92
605 609 3.691609 GGAGAAACCTCTTGCAATCGAAT 59.308 43.478 0.00 0.00 35.41 3.34
606 610 3.074412 GGAGAAACCTCTTGCAATCGAA 58.926 45.455 0.00 0.00 35.41 3.71
608 612 1.740025 GGGAGAAACCTCTTGCAATCG 59.260 52.381 0.00 0.00 38.98 3.34
609 613 2.795329 TGGGAGAAACCTCTTGCAATC 58.205 47.619 0.00 0.00 38.98 2.67
611 615 2.978156 ATGGGAGAAACCTCTTGCAA 57.022 45.000 0.00 0.00 38.98 4.08
612 616 2.978156 AATGGGAGAAACCTCTTGCA 57.022 45.000 0.00 0.00 38.98 4.08
613 617 3.862264 GCAAAATGGGAGAAACCTCTTGC 60.862 47.826 0.00 0.00 38.98 4.01
614 618 3.575687 AGCAAAATGGGAGAAACCTCTTG 59.424 43.478 0.00 0.00 38.98 3.02
655 669 0.454196 AACTTTGTTGAAGCGGCGTT 59.546 45.000 9.37 0.00 39.04 4.84
660 674 2.279659 CACTGCAAACTTTGTTGAAGCG 59.720 45.455 3.48 0.00 37.64 4.68
661 675 3.510719 TCACTGCAAACTTTGTTGAAGC 58.489 40.909 3.48 0.00 37.64 3.86
665 679 2.426738 TCCCTCACTGCAAACTTTGTTG 59.573 45.455 3.48 0.05 0.00 3.33
691 707 2.774439 AGAAACACGACATTTGCCAC 57.226 45.000 0.00 0.00 0.00 5.01
701 717 3.254470 TGACACTTCCAAGAAACACGA 57.746 42.857 0.00 0.00 0.00 4.35
709 725 4.228912 GTGAAACCATGACACTTCCAAG 57.771 45.455 0.00 0.00 0.00 3.61
739 755 1.032014 TGGTGGCAAAGCAGAGAAAC 58.968 50.000 0.00 0.00 0.00 2.78
767 783 7.888546 GGTAAATACAGACAAATAGGGGCATAT 59.111 37.037 0.00 0.00 0.00 1.78
768 784 7.228590 GGTAAATACAGACAAATAGGGGCATA 58.771 38.462 0.00 0.00 0.00 3.14
780 796 6.428083 TCACTCAAAGGGTAAATACAGACA 57.572 37.500 0.00 0.00 0.00 3.41
781 797 8.038944 TGTATCACTCAAAGGGTAAATACAGAC 58.961 37.037 0.00 0.00 0.00 3.51
826 2511 5.916318 AGAAAAGAATTTGACACAATGGCA 58.084 33.333 0.00 0.00 39.02 4.92
827 2512 6.849588 AAGAAAAGAATTTGACACAATGGC 57.150 33.333 0.00 0.00 39.02 4.40
853 2583 1.743995 GCACGGGTATTTCCACGCT 60.744 57.895 0.00 0.00 38.11 5.07
854 2584 1.303091 AAGCACGGGTATTTCCACGC 61.303 55.000 0.00 0.00 38.11 5.34
857 2587 5.986501 AAAATAAAGCACGGGTATTTCCA 57.013 34.783 0.00 0.00 38.11 3.53
877 2607 4.202305 ACGGGCATTTCCATTTCTCAAAAA 60.202 37.500 0.00 0.00 36.21 1.94
878 2608 3.323403 ACGGGCATTTCCATTTCTCAAAA 59.677 39.130 0.00 0.00 36.21 2.44
879 2609 2.896685 ACGGGCATTTCCATTTCTCAAA 59.103 40.909 0.00 0.00 36.21 2.69
880 2610 2.230992 CACGGGCATTTCCATTTCTCAA 59.769 45.455 0.00 0.00 36.21 3.02
881 2611 1.818060 CACGGGCATTTCCATTTCTCA 59.182 47.619 0.00 0.00 36.21 3.27
882 2612 1.818674 ACACGGGCATTTCCATTTCTC 59.181 47.619 0.00 0.00 36.21 2.87
883 2613 1.545582 CACACGGGCATTTCCATTTCT 59.454 47.619 0.00 0.00 36.21 2.52
884 2614 1.272212 ACACACGGGCATTTCCATTTC 59.728 47.619 0.00 0.00 36.21 2.17
885 2615 1.337118 ACACACGGGCATTTCCATTT 58.663 45.000 0.00 0.00 36.21 2.32
886 2616 1.337118 AACACACGGGCATTTCCATT 58.663 45.000 0.00 0.00 36.21 3.16
887 2617 1.337118 AAACACACGGGCATTTCCAT 58.663 45.000 0.00 0.00 36.21 3.41
888 2618 1.115467 AAAACACACGGGCATTTCCA 58.885 45.000 0.00 0.00 36.21 3.53
1028 2771 2.579201 GCGGCTTACAGCAGGAGA 59.421 61.111 0.00 0.00 44.75 3.71
1114 2861 1.461091 CGCCGAGGGAGCTTATGGTA 61.461 60.000 0.00 0.00 0.00 3.25
1165 2912 2.019272 GAGGGTAGGGAGGGAGGGA 61.019 68.421 0.00 0.00 0.00 4.20
1766 3861 2.437359 GTCATCGGCCTGCAGCTT 60.437 61.111 8.66 0.00 43.05 3.74
1801 3896 1.057275 TTGCCCAGTAGACACACCCA 61.057 55.000 0.00 0.00 0.00 4.51
1829 3924 3.544684 TCAGCACATGAATATCGGCTTT 58.455 40.909 0.00 0.00 34.02 3.51
1846 3944 1.785041 TTGCCGTGTTCAGCTTCAGC 61.785 55.000 0.00 0.00 42.49 4.26
1847 3945 0.040958 GTTGCCGTGTTCAGCTTCAG 60.041 55.000 0.00 0.00 0.00 3.02
1848 3946 0.746204 TGTTGCCGTGTTCAGCTTCA 60.746 50.000 0.00 0.00 0.00 3.02
1849 3947 0.317020 GTGTTGCCGTGTTCAGCTTC 60.317 55.000 0.00 0.00 0.00 3.86
1850 3948 0.748005 AGTGTTGCCGTGTTCAGCTT 60.748 50.000 0.00 0.00 0.00 3.74
1851 3949 1.153168 AGTGTTGCCGTGTTCAGCT 60.153 52.632 0.00 0.00 0.00 4.24
1907 4008 3.787001 CTTGAGACCCTCCCGCCC 61.787 72.222 0.00 0.00 0.00 6.13
1983 4096 0.884704 GGCTCTCTGGACGCAAACAA 60.885 55.000 0.00 0.00 0.00 2.83
2025 4144 1.133025 CAAATGTCCTGTTCGGCATCC 59.867 52.381 0.00 0.00 31.78 3.51
2026 4145 2.083774 TCAAATGTCCTGTTCGGCATC 58.916 47.619 0.00 0.00 31.78 3.91
2027 4146 2.086869 CTCAAATGTCCTGTTCGGCAT 58.913 47.619 0.00 0.00 32.99 4.40
2028 4147 1.202758 ACTCAAATGTCCTGTTCGGCA 60.203 47.619 0.00 0.00 0.00 5.69
2029 4148 1.523758 ACTCAAATGTCCTGTTCGGC 58.476 50.000 0.00 0.00 0.00 5.54
2030 4149 2.226437 CCAACTCAAATGTCCTGTTCGG 59.774 50.000 0.00 0.00 0.00 4.30
2031 4150 2.878406 ACCAACTCAAATGTCCTGTTCG 59.122 45.455 0.00 0.00 0.00 3.95
2032 4151 3.004734 CCACCAACTCAAATGTCCTGTTC 59.995 47.826 0.00 0.00 0.00 3.18
2033 4152 2.958355 CCACCAACTCAAATGTCCTGTT 59.042 45.455 0.00 0.00 0.00 3.16
2034 4153 2.174639 TCCACCAACTCAAATGTCCTGT 59.825 45.455 0.00 0.00 0.00 4.00
2035 4154 2.554032 GTCCACCAACTCAAATGTCCTG 59.446 50.000 0.00 0.00 0.00 3.86
2036 4155 2.810400 CGTCCACCAACTCAAATGTCCT 60.810 50.000 0.00 0.00 0.00 3.85
2099 4233 1.480212 ATGGCCACGACCTTCAGACA 61.480 55.000 8.16 0.00 0.00 3.41
2101 4235 1.191489 TGATGGCCACGACCTTCAGA 61.191 55.000 8.16 0.00 38.55 3.27
2304 4463 2.370647 CTAGAGCCCCTTGTAGCCGC 62.371 65.000 0.00 0.00 0.00 6.53
2311 4470 6.209788 CCTCTTATTACTACTAGAGCCCCTTG 59.790 46.154 0.00 0.00 34.23 3.61
2382 7289 5.391950 CCATCATCGGTTAACAGAAAAGGTG 60.392 44.000 12.50 11.21 0.00 4.00
2398 7312 6.732531 ATCATAGCAAACATACCATCATCG 57.267 37.500 0.00 0.00 0.00 3.84
2660 7740 9.482175 TGTGGCCGTGGCATATATATATATATA 57.518 33.333 20.16 19.97 44.11 0.86
2661 7741 8.258007 GTGTGGCCGTGGCATATATATATATAT 58.742 37.037 16.45 16.45 44.11 0.86
2662 7742 7.233757 TGTGTGGCCGTGGCATATATATATATA 59.766 37.037 13.76 13.60 44.11 0.86
2663 7743 6.042666 TGTGTGGCCGTGGCATATATATATAT 59.957 38.462 13.76 9.12 44.11 0.86
2664 7744 5.364157 TGTGTGGCCGTGGCATATATATATA 59.636 40.000 13.76 4.92 44.11 0.86
2665 7745 4.163268 TGTGTGGCCGTGGCATATATATAT 59.837 41.667 13.76 0.00 44.11 0.86
2666 7746 3.515901 TGTGTGGCCGTGGCATATATATA 59.484 43.478 13.76 0.00 44.11 0.86
2667 7747 2.304470 TGTGTGGCCGTGGCATATATAT 59.696 45.455 13.76 0.00 44.11 0.86
2668 7748 1.694696 TGTGTGGCCGTGGCATATATA 59.305 47.619 13.76 0.00 44.11 0.86
2681 7761 3.141002 CATAGTTGCAGAATGTGTGGC 57.859 47.619 0.00 0.00 39.31 5.01
2696 7776 9.605951 ATCCAGGGAAATAAATAAATGCATAGT 57.394 29.630 0.00 0.00 0.00 2.12
2715 7795 3.698040 CACAGAGGAAAATGAATCCAGGG 59.302 47.826 0.00 0.00 39.55 4.45
2725 7808 3.498774 ACAGCAGACACAGAGGAAAAT 57.501 42.857 0.00 0.00 0.00 1.82
2886 7970 6.061022 TCTAACTATGAAAATCACCTGGCA 57.939 37.500 0.00 0.00 0.00 4.92
2985 8069 3.923864 ACGGGCACGCTCAACAGA 61.924 61.111 9.12 0.00 46.04 3.41
3006 8090 3.369471 GGCAAATAGTCACAGGAGTAGCA 60.369 47.826 0.00 0.00 32.62 3.49
3134 8263 1.185315 CCTACCCATGGGCACAAAAG 58.815 55.000 31.73 16.98 39.32 2.27
3159 8289 2.711009 CCCCCAGGCATAGAATTGTAGA 59.289 50.000 0.00 0.00 0.00 2.59


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.