Multiple sequence alignment - TraesCS5D01G462800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G462800 chr5D 100.000 4115 0 0 1 4115 506246757 506242643 0.000000e+00 7600.0
1 TraesCS5D01G462800 chr5D 89.259 270 24 4 3681 3948 191054553 191054287 2.370000e-87 333.0
2 TraesCS5D01G462800 chr5D 88.172 279 28 5 3673 3948 31070967 31070691 1.100000e-85 327.0
3 TraesCS5D01G462800 chr5D 83.412 211 29 5 2610 2815 497944488 497944279 1.510000e-44 191.0
4 TraesCS5D01G462800 chr5D 82.273 220 30 7 2610 2822 497877070 497876853 9.090000e-42 182.0
5 TraesCS5D01G462800 chr5D 100.000 46 0 0 2828 2873 506243974 506243929 7.330000e-13 86.1
6 TraesCS5D01G462800 chr5A 83.824 2343 245 72 1 2263 634061857 634059569 0.000000e+00 2104.0
7 TraesCS5D01G462800 chr5A 92.714 549 30 5 2847 3393 634059199 634058659 0.000000e+00 784.0
8 TraesCS5D01G462800 chr5A 90.435 230 18 3 2601 2829 634059399 634059173 2.400000e-77 300.0
9 TraesCS5D01G462800 chr5A 79.348 276 42 13 1763 2028 69011941 69011671 3.270000e-41 180.0
10 TraesCS5D01G462800 chr5A 83.077 195 31 2 996 1189 12620506 12620699 4.230000e-40 176.0
11 TraesCS5D01G462800 chr5A 78.832 274 47 8 1763 2028 12621119 12621389 1.520000e-39 174.0
12 TraesCS5D01G462800 chr5A 81.443 194 36 0 996 1189 69012554 69012361 4.260000e-35 159.0
13 TraesCS5D01G462800 chr5A 100.000 32 0 0 3966 3997 634057555 634057524 4.440000e-05 60.2
14 TraesCS5D01G462800 chr5B 92.769 567 35 4 2828 3389 637120883 637120318 0.000000e+00 815.0
15 TraesCS5D01G462800 chr5B 92.171 562 39 5 2833 3391 637018903 637018344 0.000000e+00 789.0
16 TraesCS5D01G462800 chr5B 91.696 566 34 7 2833 3391 637124002 637123443 0.000000e+00 773.0
17 TraesCS5D01G462800 chr5B 87.976 657 57 10 1 645 637126768 637126122 0.000000e+00 756.0
18 TraesCS5D01G462800 chr5B 85.523 746 73 21 718 1453 637126007 637125287 0.000000e+00 747.0
19 TraesCS5D01G462800 chr5B 89.307 505 39 8 2828 3324 637114177 637113680 1.620000e-173 619.0
20 TraesCS5D01G462800 chr5B 82.285 779 77 31 1737 2467 637125012 637124247 5.840000e-173 617.0
21 TraesCS5D01G462800 chr5B 87.824 501 55 5 2828 3325 636961631 636961134 2.130000e-162 582.0
22 TraesCS5D01G462800 chr5B 89.474 456 42 3 2874 3329 636989824 636989375 4.610000e-159 571.0
23 TraesCS5D01G462800 chr5B 87.244 439 47 2 2874 3304 637045119 637044682 3.700000e-135 492.0
24 TraesCS5D01G462800 chr5B 91.143 350 29 2 2471 2820 637019219 637018872 1.340000e-129 473.0
25 TraesCS5D01G462800 chr5B 88.636 308 29 5 2541 2847 637124246 637123944 1.810000e-98 370.0
26 TraesCS5D01G462800 chr5B 88.929 280 23 7 3048 3326 637013959 637013687 5.100000e-89 339.0
27 TraesCS5D01G462800 chr5B 88.930 271 29 1 3677 3947 528970492 528970223 2.370000e-87 333.0
28 TraesCS5D01G462800 chr5B 88.302 265 18 8 3428 3682 637018342 637018081 5.170000e-79 305.0
29 TraesCS5D01G462800 chr5B 84.231 260 19 12 3428 3682 637120317 637120075 2.470000e-57 233.0
30 TraesCS5D01G462800 chr5B 89.266 177 18 1 2653 2829 637114307 637114132 1.930000e-53 220.0
31 TraesCS5D01G462800 chr5B 89.266 177 18 1 2653 2829 637121013 637120838 1.930000e-53 220.0
32 TraesCS5D01G462800 chr5B 83.607 244 24 13 3428 3669 637123441 637123212 8.960000e-52 215.0
33 TraesCS5D01G462800 chr5B 87.006 177 20 2 2653 2829 636961759 636961586 3.250000e-46 196.0
34 TraesCS5D01G462800 chr5B 81.860 215 35 4 2610 2822 617225021 617224809 1.180000e-40 178.0
35 TraesCS5D01G462800 chr5B 90.833 120 11 0 2144 2263 636990726 636990607 1.180000e-35 161.0
36 TraesCS5D01G462800 chr5B 89.167 120 10 1 2144 2263 637111582 637111466 3.310000e-31 147.0
37 TraesCS5D01G462800 chr5B 87.619 105 12 1 2262 2366 637019360 637019257 2.010000e-23 121.0
38 TraesCS5D01G462800 chr5B 83.784 111 17 1 2335 2444 636990567 636990457 2.020000e-18 104.0
39 TraesCS5D01G462800 chr5B 93.443 61 4 0 4055 4115 637120020 637119960 1.580000e-14 91.6
40 TraesCS5D01G462800 chr5B 90.323 62 5 1 3944 4004 637018079 637018018 3.410000e-11 80.5
41 TraesCS5D01G462800 chr5B 100.000 37 0 0 3954 3990 637044171 637044135 7.380000e-08 69.4
42 TraesCS5D01G462800 chr6D 78.628 627 95 22 27 622 290901388 290900770 3.000000e-101 379.0
43 TraesCS5D01G462800 chr6D 89.850 266 27 0 3679 3944 434030533 434030798 3.940000e-90 342.0
44 TraesCS5D01G462800 chr6D 79.377 257 42 10 1767 2015 4872782 4872529 1.970000e-38 171.0
45 TraesCS5D01G462800 chr6A 78.642 604 90 26 28 603 432538680 432539272 8.410000e-97 364.0
46 TraesCS5D01G462800 chr2D 89.855 276 26 2 3674 3947 148138265 148137990 1.820000e-93 353.0
47 TraesCS5D01G462800 chr2D 89.299 271 27 2 3676 3945 264164334 264164065 5.100000e-89 339.0
48 TraesCS5D01G462800 chr2D 75.665 489 82 28 1746 2221 543047168 543046704 4.170000e-50 209.0
49 TraesCS5D01G462800 chr3D 90.530 264 25 0 3681 3944 346852083 346851820 2.350000e-92 350.0
50 TraesCS5D01G462800 chr7A 88.772 285 26 6 3667 3947 564832419 564832701 1.100000e-90 344.0
51 TraesCS5D01G462800 chr1B 89.591 269 28 0 3680 3948 266478054 266477786 3.940000e-90 342.0
52 TraesCS5D01G462800 chr1B 89.216 102 11 0 1737 1838 586691892 586691791 1.200000e-25 128.0
53 TraesCS5D01G462800 chr1B 86.301 73 10 0 2471 2543 331129083 331129155 3.410000e-11 80.5
54 TraesCS5D01G462800 chr1B 92.683 41 3 0 2503 2543 57019482 57019522 4.440000e-05 60.2
55 TraesCS5D01G462800 chr2B 92.411 224 17 0 2895 3118 647741887 647741664 1.850000e-83 320.0
56 TraesCS5D01G462800 chr2B 89.385 179 17 2 897 1075 149998962 149998786 1.490000e-54 224.0
57 TraesCS5D01G462800 chr2B 89.011 182 18 2 894 1075 707697230 707697051 1.490000e-54 224.0
58 TraesCS5D01G462800 chr2B 75.906 469 80 25 1763 2220 647742906 647742460 4.170000e-50 209.0
59 TraesCS5D01G462800 chr3B 89.560 182 17 2 894 1075 53615612 53615791 3.200000e-56 230.0
60 TraesCS5D01G462800 chr4A 87.912 182 20 2 894 1075 672218349 672218528 3.220000e-51 213.0
61 TraesCS5D01G462800 chr2A 75.738 474 82 26 1763 2225 685752190 685751739 1.500000e-49 207.0
62 TraesCS5D01G462800 chr2A 85.128 195 27 2 996 1189 685752852 685752659 9.020000e-47 198.0
63 TraesCS5D01G462800 chr2A 83.854 192 29 2 996 1186 137271508 137271318 9.090000e-42 182.0
64 TraesCS5D01G462800 chr2A 79.061 277 40 14 1763 2028 137270894 137270625 1.520000e-39 174.0
65 TraesCS5D01G462800 chr2A 78.832 274 47 8 1763 2028 660108649 660108919 1.520000e-39 174.0
66 TraesCS5D01G462800 chr6B 86.486 185 17 6 894 1075 8529017 8529196 3.250000e-46 196.0
67 TraesCS5D01G462800 chr6B 93.023 43 3 0 2501 2543 255522249 255522207 3.430000e-06 63.9
68 TraesCS5D01G462800 chr4B 79.197 274 46 8 1763 2028 662856786 662857056 3.270000e-41 180.0
69 TraesCS5D01G462800 chr4B 87.671 73 7 2 2471 2542 140891359 140891430 2.640000e-12 84.2
70 TraesCS5D01G462800 chr1A 83.163 196 29 2 996 1189 310700142 310700335 4.230000e-40 176.0
71 TraesCS5D01G462800 chr1D 91.803 61 3 2 2471 2530 233793724 233793783 2.640000e-12 84.2
72 TraesCS5D01G462800 chr1D 84.932 73 11 0 2471 2543 246951982 246951910 1.590000e-09 75.0
73 TraesCS5D01G462800 chr1D 92.683 41 3 0 2503 2543 303340646 303340606 4.440000e-05 60.2
74 TraesCS5D01G462800 chr7B 85.135 74 7 4 2471 2542 427698217 427698146 5.710000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G462800 chr5D 506242643 506246757 4114 True 3843.050000 7600 100.000000 1 4115 2 chr5D.!!$R5 4114
1 TraesCS5D01G462800 chr5A 634057524 634061857 4333 True 812.050000 2104 91.743250 1 3997 4 chr5A.!!$R2 3996
2 TraesCS5D01G462800 chr5B 637119960 637126768 6808 True 483.760000 815 87.943200 1 4115 10 chr5B.!!$R9 4114
3 TraesCS5D01G462800 chr5B 636961134 636961759 625 True 389.000000 582 87.415000 2653 3325 2 chr5B.!!$R4 672
4 TraesCS5D01G462800 chr5B 637018018 637019360 1342 True 353.700000 789 89.911600 2262 4004 5 chr5B.!!$R6 1742
5 TraesCS5D01G462800 chr5B 637111466 637114307 2841 True 328.666667 619 89.246667 2144 3324 3 chr5B.!!$R8 1180
6 TraesCS5D01G462800 chr5B 637044135 637045119 984 True 280.700000 492 93.622000 2874 3990 2 chr5B.!!$R7 1116
7 TraesCS5D01G462800 chr5B 636989375 636990726 1351 True 278.666667 571 88.030333 2144 3329 3 chr5B.!!$R5 1185
8 TraesCS5D01G462800 chr6D 290900770 290901388 618 True 379.000000 379 78.628000 27 622 1 chr6D.!!$R2 595
9 TraesCS5D01G462800 chr6A 432538680 432539272 592 False 364.000000 364 78.642000 28 603 1 chr6A.!!$F1 575
10 TraesCS5D01G462800 chr2B 647741664 647742906 1242 True 264.500000 320 84.158500 1763 3118 2 chr2B.!!$R3 1355
11 TraesCS5D01G462800 chr2A 685751739 685752852 1113 True 202.500000 207 80.433000 996 2225 2 chr2A.!!$R2 1229

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
200 203 0.176680 AAGCTGGACGGTATCTGCAG 59.823 55.0 7.63 7.63 31.95 4.41 F
1263 1408 0.179210 GTTAGATTTTCGCGCGCCAA 60.179 50.0 27.95 18.05 0.00 4.52 F
1485 1680 0.030773 GTGATGCTGCATGCTCCATG 59.969 55.0 21.53 8.91 43.91 3.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1466 1661 0.030773 CATGGAGCATGCAGCATCAC 59.969 55.000 21.98 0.3 42.42 3.06 R
2893 3664 0.555769 TGCTTTCCAAGACCCTGGTT 59.444 50.000 0.00 0.0 37.74 3.67 R
3410 8205 1.741401 CCGAGTGCAAGCCGAATCA 60.741 57.895 5.38 0.0 0.00 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.947147 AAAGGGCGCGCAACTCCA 62.947 61.111 34.42 0.00 0.00 3.86
32 33 0.455633 GCAACTCCAATTCTGCAGCG 60.456 55.000 9.47 0.00 34.87 5.18
73 75 2.238646 AGAAGTCACTGAACACCAACCA 59.761 45.455 0.00 0.00 0.00 3.67
135 137 1.277557 AGCAGCCTCCTGTTCTTACTG 59.722 52.381 0.00 0.00 41.26 2.74
200 203 0.176680 AAGCTGGACGGTATCTGCAG 59.823 55.000 7.63 7.63 31.95 4.41
228 232 2.603173 GCAACGCCTTCAAGAACAAGAG 60.603 50.000 0.00 0.00 0.00 2.85
234 238 2.417933 CCTTCAAGAACAAGAGGATGCG 59.582 50.000 0.00 0.00 0.00 4.73
244 248 1.135094 AGAGGATGCGATGGGTTCAT 58.865 50.000 0.00 0.00 36.09 2.57
252 256 1.742761 CGATGGGTTCATTGCTGAGT 58.257 50.000 0.00 0.00 32.98 3.41
253 257 1.399440 CGATGGGTTCATTGCTGAGTG 59.601 52.381 0.00 0.00 32.98 3.51
254 258 2.440409 GATGGGTTCATTGCTGAGTGT 58.560 47.619 0.00 0.00 32.98 3.55
444 474 4.496336 GGCTGCTGCGAGGGGAAT 62.496 66.667 9.65 0.00 40.82 3.01
446 476 2.515523 CTGCTGCGAGGGGAATGG 60.516 66.667 0.00 0.00 0.00 3.16
447 477 4.113815 TGCTGCGAGGGGAATGGG 62.114 66.667 0.00 0.00 0.00 4.00
450 480 3.764160 CTGCGAGGGGAATGGGAGC 62.764 68.421 0.00 0.00 0.00 4.70
451 481 3.483869 GCGAGGGGAATGGGAGCT 61.484 66.667 0.00 0.00 0.00 4.09
453 483 2.370445 CGAGGGGAATGGGAGCTGT 61.370 63.158 0.00 0.00 0.00 4.40
577 614 4.598894 CATGGCGAGGAGAGCGGG 62.599 72.222 0.00 0.00 35.00 6.13
673 764 2.046314 CCAGATGGGCCGAAACGT 60.046 61.111 0.00 0.00 0.00 3.99
680 771 2.606030 GGGCCGAAACGTTACGCAA 61.606 57.895 4.09 0.00 0.00 4.85
681 772 1.279238 GGCCGAAACGTTACGCAAA 59.721 52.632 4.09 0.00 0.00 3.68
682 773 0.316854 GGCCGAAACGTTACGCAAAA 60.317 50.000 4.09 0.00 0.00 2.44
685 776 1.973320 CCGAAACGTTACGCAAAATGG 59.027 47.619 4.09 0.00 0.00 3.16
686 777 2.349627 CCGAAACGTTACGCAAAATGGA 60.350 45.455 4.09 0.00 0.00 3.41
687 778 2.648431 CGAAACGTTACGCAAAATGGAC 59.352 45.455 4.09 0.00 0.00 4.02
688 779 2.691984 AACGTTACGCAAAATGGACC 57.308 45.000 4.09 0.00 0.00 4.46
689 780 0.513820 ACGTTACGCAAAATGGACCG 59.486 50.000 4.09 0.00 0.00 4.79
691 784 1.194997 CGTTACGCAAAATGGACCGAA 59.805 47.619 0.00 0.00 0.00 4.30
700 793 2.185310 AATGGACCGAAAGCGAGCCT 62.185 55.000 0.00 0.00 40.82 4.58
701 794 2.509561 GGACCGAAAGCGAGCCTC 60.510 66.667 0.00 0.00 40.82 4.70
703 796 1.153549 GACCGAAAGCGAGCCTCAT 60.154 57.895 0.00 0.00 40.82 2.90
706 799 1.448540 CGAAAGCGAGCCTCATGGT 60.449 57.895 0.00 0.00 40.82 3.55
710 803 1.630126 AAGCGAGCCTCATGGTCCAT 61.630 55.000 0.00 0.00 38.27 3.41
713 806 0.395686 CGAGCCTCATGGTCCATCAT 59.604 55.000 0.00 0.00 38.27 2.45
856 949 2.900547 GCCTCCAGCTCTCTCTCTT 58.099 57.895 0.00 0.00 38.99 2.85
862 955 2.026641 CCAGCTCTCTCTCTTCCTCTG 58.973 57.143 0.00 0.00 0.00 3.35
953 1048 1.304713 CACCAGGGCATTTGCTCCT 60.305 57.895 0.00 2.97 44.25 3.69
961 1056 0.679002 GCATTTGCTCCTGCTCCTCA 60.679 55.000 0.00 0.00 40.48 3.86
1189 1284 1.738346 CGATGCCCAGGTCAGATCGA 61.738 60.000 0.00 0.00 38.53 3.59
1254 1399 3.476181 GTGCGTTCGTGGTTAGATTTTC 58.524 45.455 0.00 0.00 0.00 2.29
1261 1406 1.297378 GGTTAGATTTTCGCGCGCC 60.297 57.895 27.95 13.61 0.00 6.53
1263 1408 0.179210 GTTAGATTTTCGCGCGCCAA 60.179 50.000 27.95 18.05 0.00 4.52
1265 1410 1.017177 TAGATTTTCGCGCGCCAAGT 61.017 50.000 27.95 16.87 0.00 3.16
1286 1433 1.991430 CGCTTTGTCGGATCTGTCG 59.009 57.895 0.42 0.00 0.00 4.35
1291 1438 2.583593 GTCGGATCTGTCGCTGCC 60.584 66.667 0.42 0.00 0.00 4.85
1292 1439 3.838271 TCGGATCTGTCGCTGCCC 61.838 66.667 0.42 0.00 0.00 5.36
1300 1447 3.723348 GTCGCTGCCCCGTTTGTC 61.723 66.667 0.00 0.00 0.00 3.18
1320 1468 2.086869 CTGCGGTGGATTTCAGATTGT 58.913 47.619 0.00 0.00 0.00 2.71
1321 1469 1.811965 TGCGGTGGATTTCAGATTGTG 59.188 47.619 0.00 0.00 0.00 3.33
1325 1473 2.096496 GGTGGATTTCAGATTGTGCTCG 59.904 50.000 0.00 0.00 0.00 5.03
1326 1474 3.002791 GTGGATTTCAGATTGTGCTCGA 58.997 45.455 0.00 0.00 0.00 4.04
1332 1483 1.792367 TCAGATTGTGCTCGACGTTTG 59.208 47.619 0.00 0.00 0.00 2.93
1334 1485 1.792949 AGATTGTGCTCGACGTTTGTC 59.207 47.619 0.00 0.00 41.91 3.18
1336 1487 1.484227 TTGTGCTCGACGTTTGTCCG 61.484 55.000 0.00 0.00 42.37 4.79
1340 1491 1.485032 GCTCGACGTTTGTCCGTGTT 61.485 55.000 0.00 0.00 41.98 3.32
1341 1492 0.925466 CTCGACGTTTGTCCGTGTTT 59.075 50.000 0.00 0.00 41.98 2.83
1361 1512 0.384309 TAGATCGGTAGGCACTTGCG 59.616 55.000 0.00 0.00 43.26 4.85
1363 1514 1.146358 GATCGGTAGGCACTTGCGTC 61.146 60.000 0.00 0.00 43.26 5.19
1368 1519 1.809619 TAGGCACTTGCGTCGATGC 60.810 57.895 22.77 22.77 43.26 3.91
1379 1532 1.070577 GCGTCGATGCAATATTCGCTT 60.071 47.619 24.45 3.91 36.27 4.68
1382 1535 3.545633 GTCGATGCAATATTCGCTTTCC 58.454 45.455 2.57 0.00 35.39 3.13
1393 1546 4.520846 GCTTTCCGTGATGCCGCG 62.521 66.667 0.00 0.00 45.12 6.46
1401 1554 2.125310 TGATGCCGCGGTAACCTG 60.125 61.111 28.70 0.00 0.00 4.00
1402 1555 2.185867 GATGCCGCGGTAACCTGA 59.814 61.111 28.70 2.32 0.00 3.86
1424 1577 2.288961 ATGCCCGTAGTTTCGTAGTG 57.711 50.000 0.00 0.00 0.00 2.74
1432 1585 3.125829 CGTAGTTTCGTAGTGGTAGCAGA 59.874 47.826 0.00 0.00 0.00 4.26
1437 1590 5.242393 AGTTTCGTAGTGGTAGCAGAACTTA 59.758 40.000 0.00 0.00 0.00 2.24
1452 1647 8.654230 AGCAGAACTTAGTATGTTGATGTATG 57.346 34.615 6.18 0.00 0.00 2.39
1453 1648 8.260818 AGCAGAACTTAGTATGTTGATGTATGT 58.739 33.333 6.18 0.00 0.00 2.29
1454 1649 8.331022 GCAGAACTTAGTATGTTGATGTATGTG 58.669 37.037 6.18 0.00 0.00 3.21
1455 1650 8.820933 CAGAACTTAGTATGTTGATGTATGTGG 58.179 37.037 6.18 0.00 0.00 4.17
1456 1651 8.540388 AGAACTTAGTATGTTGATGTATGTGGT 58.460 33.333 6.18 0.00 0.00 4.16
1457 1652 9.811995 GAACTTAGTATGTTGATGTATGTGGTA 57.188 33.333 6.18 0.00 0.00 3.25
1466 1661 8.192068 TGTTGATGTATGTGGTATAGTTTTCG 57.808 34.615 0.00 0.00 0.00 3.46
1467 1662 7.820386 TGTTGATGTATGTGGTATAGTTTTCGT 59.180 33.333 0.00 0.00 0.00 3.85
1468 1663 7.764695 TGATGTATGTGGTATAGTTTTCGTG 57.235 36.000 0.00 0.00 0.00 4.35
1469 1664 7.548967 TGATGTATGTGGTATAGTTTTCGTGA 58.451 34.615 0.00 0.00 0.00 4.35
1470 1665 8.201464 TGATGTATGTGGTATAGTTTTCGTGAT 58.799 33.333 0.00 0.00 0.00 3.06
1471 1666 7.764695 TGTATGTGGTATAGTTTTCGTGATG 57.235 36.000 0.00 0.00 0.00 3.07
1472 1667 5.734855 ATGTGGTATAGTTTTCGTGATGC 57.265 39.130 0.00 0.00 0.00 3.91
1473 1668 4.827692 TGTGGTATAGTTTTCGTGATGCT 58.172 39.130 0.00 0.00 0.00 3.79
1474 1669 4.629634 TGTGGTATAGTTTTCGTGATGCTG 59.370 41.667 0.00 0.00 0.00 4.41
1475 1670 3.621268 TGGTATAGTTTTCGTGATGCTGC 59.379 43.478 0.00 0.00 0.00 5.25
1476 1671 3.621268 GGTATAGTTTTCGTGATGCTGCA 59.379 43.478 4.13 4.13 0.00 4.41
1477 1672 4.273480 GGTATAGTTTTCGTGATGCTGCAT 59.727 41.667 16.20 16.20 0.00 3.96
1478 1673 2.624316 AGTTTTCGTGATGCTGCATG 57.376 45.000 21.53 5.96 0.00 4.06
1479 1674 0.986992 GTTTTCGTGATGCTGCATGC 59.013 50.000 21.53 11.82 43.25 4.06
1480 1675 0.883153 TTTTCGTGATGCTGCATGCT 59.117 45.000 21.53 0.00 43.37 3.79
1481 1676 0.448990 TTTCGTGATGCTGCATGCTC 59.551 50.000 21.53 7.36 43.37 4.26
1482 1677 1.371337 TTCGTGATGCTGCATGCTCC 61.371 55.000 21.53 10.14 43.37 4.70
1483 1678 2.110352 CGTGATGCTGCATGCTCCA 61.110 57.895 21.53 15.65 43.37 3.86
1484 1679 1.444917 CGTGATGCTGCATGCTCCAT 61.445 55.000 21.53 19.57 43.37 3.41
1485 1680 0.030773 GTGATGCTGCATGCTCCATG 59.969 55.000 21.53 8.91 43.91 3.66
1494 1689 1.399714 CATGCTCCATGCCATTCTGT 58.600 50.000 0.00 0.00 42.00 3.41
1495 1690 1.067060 CATGCTCCATGCCATTCTGTG 59.933 52.381 0.00 0.00 42.00 3.66
1496 1691 0.038599 TGCTCCATGCCATTCTGTGT 59.961 50.000 0.00 0.00 42.00 3.72
1497 1692 1.281577 TGCTCCATGCCATTCTGTGTA 59.718 47.619 0.00 0.00 42.00 2.90
1498 1693 1.945394 GCTCCATGCCATTCTGTGTAG 59.055 52.381 0.00 0.00 35.15 2.74
1499 1694 2.420547 GCTCCATGCCATTCTGTGTAGA 60.421 50.000 0.00 0.00 35.15 2.59
1500 1695 3.464907 CTCCATGCCATTCTGTGTAGAG 58.535 50.000 0.00 0.00 33.70 2.43
1501 1696 2.171237 TCCATGCCATTCTGTGTAGAGG 59.829 50.000 0.00 0.00 33.70 3.69
1502 1697 2.092753 CCATGCCATTCTGTGTAGAGGT 60.093 50.000 0.00 0.00 33.70 3.85
1503 1698 3.134623 CCATGCCATTCTGTGTAGAGGTA 59.865 47.826 0.00 0.00 33.70 3.08
1504 1699 4.384098 CCATGCCATTCTGTGTAGAGGTAA 60.384 45.833 0.00 0.00 33.70 2.85
1505 1700 5.371526 CATGCCATTCTGTGTAGAGGTAAT 58.628 41.667 0.00 0.00 33.70 1.89
1544 1739 1.796459 CATGGTTTTGCAGCAGAAAGC 59.204 47.619 17.91 17.91 46.19 3.51
1556 1751 1.788344 GCAGAAAGCAATCGAACGAGC 60.788 52.381 2.94 2.02 44.79 5.03
1558 1753 1.728971 AGAAAGCAATCGAACGAGCAG 59.271 47.619 10.12 1.49 0.00 4.24
1562 1757 0.097674 GCAATCGAACGAGCAGCATT 59.902 50.000 2.94 0.00 0.00 3.56
1578 1773 4.805719 GCAGCATTTTAAGGTGATTTAGGC 59.194 41.667 0.00 0.00 36.64 3.93
1582 1777 5.867174 GCATTTTAAGGTGATTTAGGCGTTT 59.133 36.000 0.00 0.00 0.00 3.60
1583 1778 7.030768 GCATTTTAAGGTGATTTAGGCGTTTA 58.969 34.615 0.00 0.00 0.00 2.01
1590 1785 8.975410 AAGGTGATTTAGGCGTTTAATTTTAC 57.025 30.769 0.00 0.00 0.00 2.01
1625 1820 7.672983 ATAACTGTTCACTATGAGTTGTTGG 57.327 36.000 0.00 0.00 0.00 3.77
1653 1849 0.881118 TCAAATTTGACGCCCAGCTC 59.119 50.000 16.91 0.00 31.01 4.09
1658 1891 1.667236 TTTGACGCCCAGCTCATATG 58.333 50.000 0.00 0.00 0.00 1.78
1662 1895 2.632512 TGACGCCCAGCTCATATGATTA 59.367 45.455 5.72 0.00 0.00 1.75
1671 1904 8.359642 GCCCAGCTCATATGATTAAAATGTTTA 58.640 33.333 5.72 0.00 0.00 2.01
1709 1986 6.017605 GGAATCATTACCTATGTGTGCTTCTG 60.018 42.308 0.00 0.00 35.64 3.02
1711 1988 5.664457 TCATTACCTATGTGTGCTTCTGAG 58.336 41.667 0.00 0.00 35.64 3.35
1717 1994 2.309528 TGTGTGCTTCTGAGAACGTT 57.690 45.000 0.00 0.00 33.75 3.99
1726 2003 3.179443 TCTGAGAACGTTTTCTGCTGT 57.821 42.857 18.43 0.00 42.53 4.40
1733 2010 3.609103 ACGTTTTCTGCTGTTAGCTTG 57.391 42.857 0.00 0.00 42.97 4.01
1734 2011 2.943033 ACGTTTTCTGCTGTTAGCTTGT 59.057 40.909 0.00 0.00 42.97 3.16
1752 2035 6.846350 AGCTTGTCAAATGTACTTAATGCTC 58.154 36.000 0.00 0.00 0.00 4.26
1754 2037 5.794687 TGTCAAATGTACTTAATGCTCGG 57.205 39.130 0.00 0.00 0.00 4.63
1816 2099 1.382629 CCGGATGAAGGGTGGGTTT 59.617 57.895 0.00 0.00 0.00 3.27
1834 2117 3.010420 GTTTTATGTCAGTCCTGAGGCC 58.990 50.000 0.00 0.00 40.75 5.19
1883 2166 1.476110 GGTAAGTCACACCACCTTGCA 60.476 52.381 0.00 0.00 36.01 4.08
1884 2167 1.873591 GTAAGTCACACCACCTTGCAG 59.126 52.381 0.00 0.00 0.00 4.41
1894 2177 1.741706 CCACCTTGCAGCTGTATCTTG 59.258 52.381 16.64 7.72 0.00 3.02
1902 2189 4.383173 TGCAGCTGTATCTTGTGATATGG 58.617 43.478 16.64 0.00 37.48 2.74
1903 2190 4.101430 TGCAGCTGTATCTTGTGATATGGA 59.899 41.667 16.64 0.00 37.48 3.41
1907 2194 4.993584 GCTGTATCTTGTGATATGGAGTGG 59.006 45.833 0.00 0.00 37.48 4.00
1927 2217 3.826157 TGGTCATTTCTGGCTTAAGTTGG 59.174 43.478 4.02 0.00 0.00 3.77
1928 2218 3.367395 GGTCATTTCTGGCTTAAGTTGGC 60.367 47.826 4.02 0.00 0.00 4.52
1939 2230 5.547465 GGCTTAAGTTGGCCTAATTTTGTT 58.453 37.500 4.99 0.00 44.48 2.83
2015 2307 1.282875 GTTGCGTTTGAGGCAGGTC 59.717 57.895 0.00 0.00 40.30 3.85
2016 2308 1.153066 TTGCGTTTGAGGCAGGTCA 60.153 52.632 0.00 0.00 40.30 4.02
2033 2325 1.866601 GTCAGTTGGCCAATTTGTTGC 59.133 47.619 23.66 6.68 0.00 4.17
2046 2338 3.502191 TTTGTTGCTTGTGTCAAGTCC 57.498 42.857 10.49 1.49 0.00 3.85
2047 2339 2.121291 TGTTGCTTGTGTCAAGTCCA 57.879 45.000 10.49 3.60 0.00 4.02
2048 2340 2.653726 TGTTGCTTGTGTCAAGTCCAT 58.346 42.857 10.49 0.00 0.00 3.41
2049 2341 2.618241 TGTTGCTTGTGTCAAGTCCATC 59.382 45.455 10.49 2.80 0.00 3.51
2050 2342 2.880890 GTTGCTTGTGTCAAGTCCATCT 59.119 45.455 10.49 0.00 0.00 2.90
2051 2343 2.771089 TGCTTGTGTCAAGTCCATCTC 58.229 47.619 10.49 0.00 0.00 2.75
2052 2344 2.079925 GCTTGTGTCAAGTCCATCTCC 58.920 52.381 10.49 0.00 0.00 3.71
2053 2345 2.289945 GCTTGTGTCAAGTCCATCTCCT 60.290 50.000 10.49 0.00 0.00 3.69
2055 2347 2.608623 TGTGTCAAGTCCATCTCCTCA 58.391 47.619 0.00 0.00 0.00 3.86
2057 2349 3.584406 TGTGTCAAGTCCATCTCCTCATT 59.416 43.478 0.00 0.00 0.00 2.57
2058 2350 4.042062 TGTGTCAAGTCCATCTCCTCATTT 59.958 41.667 0.00 0.00 0.00 2.32
2059 2351 4.633565 GTGTCAAGTCCATCTCCTCATTTC 59.366 45.833 0.00 0.00 0.00 2.17
2060 2352 4.195416 GTCAAGTCCATCTCCTCATTTCC 58.805 47.826 0.00 0.00 0.00 3.13
2061 2353 3.845992 TCAAGTCCATCTCCTCATTTCCA 59.154 43.478 0.00 0.00 0.00 3.53
2062 2354 4.289410 TCAAGTCCATCTCCTCATTTCCAA 59.711 41.667 0.00 0.00 0.00 3.53
2063 2355 4.934797 AGTCCATCTCCTCATTTCCAAA 57.065 40.909 0.00 0.00 0.00 3.28
2064 2356 5.261040 AGTCCATCTCCTCATTTCCAAAA 57.739 39.130 0.00 0.00 0.00 2.44
2065 2357 5.644188 AGTCCATCTCCTCATTTCCAAAAA 58.356 37.500 0.00 0.00 0.00 1.94
2094 2387 9.860898 AGTCCATCTCTTGTTTTAAATTATTGC 57.139 29.630 0.00 0.00 0.00 3.56
2109 2402 9.787532 TTAAATTATTGCTACTTGTGCTCATTC 57.212 29.630 0.00 0.00 0.00 2.67
2112 2405 3.407424 TGCTACTTGTGCTCATTCTGT 57.593 42.857 0.00 0.00 0.00 3.41
2113 2406 3.743521 TGCTACTTGTGCTCATTCTGTT 58.256 40.909 0.00 0.00 0.00 3.16
2115 2408 4.931601 TGCTACTTGTGCTCATTCTGTTAG 59.068 41.667 0.00 0.00 0.00 2.34
2127 2439 6.583806 GCTCATTCTGTTAGTTGTTTGATTGG 59.416 38.462 0.00 0.00 0.00 3.16
2232 2544 4.457603 TGGGTATGTTACAAGTGTGCATTC 59.542 41.667 0.00 4.67 0.00 2.67
2241 2554 7.860373 TGTTACAAGTGTGCATTCTTTATTGTC 59.140 33.333 0.00 0.00 32.38 3.18
2244 2557 7.491682 ACAAGTGTGCATTCTTTATTGTCTTT 58.508 30.769 0.00 0.00 0.00 2.52
2282 2616 6.127479 TGCCTTGTTGTAATCATTATCCAACC 60.127 38.462 7.92 0.00 35.66 3.77
2287 2621 6.601613 TGTTGTAATCATTATCCAACCTGTCC 59.398 38.462 7.92 0.00 35.66 4.02
2294 2628 2.789409 ATCCAACCTGTCCTGCTTAC 57.211 50.000 0.00 0.00 0.00 2.34
2303 2637 3.003689 CCTGTCCTGCTTACACAAAGTTG 59.996 47.826 0.00 0.00 37.53 3.16
2313 2647 5.713025 CTTACACAAAGTTGCAATGCCTAT 58.287 37.500 0.59 0.00 0.00 2.57
2316 2650 5.713025 ACACAAAGTTGCAATGCCTATAAG 58.287 37.500 0.59 0.00 0.00 1.73
2377 2728 0.693049 TTCCTGGAGCCTGGAACTTC 59.307 55.000 20.08 0.00 45.07 3.01
2592 2993 5.770162 GGGTCAACTATTGAAAGATATGGGG 59.230 44.000 0.00 0.00 42.15 4.96
2607 3048 0.687354 TGGGGAGTGCTTCAAGAGTC 59.313 55.000 0.00 0.00 0.00 3.36
2760 3527 3.650942 ACAACAAGGTCATTGAGGAGGTA 59.349 43.478 3.86 0.00 41.83 3.08
2768 3536 4.081087 GGTCATTGAGGAGGTAAGCAGTTA 60.081 45.833 0.00 0.00 0.00 2.24
2825 3593 3.067742 CCAAATGCAACTCTGGGATGATC 59.932 47.826 0.00 0.00 0.00 2.92
2826 3594 2.653234 ATGCAACTCTGGGATGATCC 57.347 50.000 1.94 1.94 35.23 3.36
2827 3595 1.588239 TGCAACTCTGGGATGATCCT 58.412 50.000 11.87 0.00 36.57 3.24
2828 3596 1.211212 TGCAACTCTGGGATGATCCTG 59.789 52.381 11.87 5.14 36.57 3.86
2829 3597 1.476471 GCAACTCTGGGATGATCCTGG 60.476 57.143 11.87 4.77 36.57 4.45
2830 3598 2.121948 CAACTCTGGGATGATCCTGGA 58.878 52.381 11.87 8.79 36.57 3.86
2831 3599 2.709934 CAACTCTGGGATGATCCTGGAT 59.290 50.000 9.42 9.42 36.57 3.41
2832 3600 2.618794 ACTCTGGGATGATCCTGGATC 58.381 52.381 26.36 26.36 39.31 3.36
2833 3601 2.181865 ACTCTGGGATGATCCTGGATCT 59.818 50.000 30.97 19.45 39.56 2.75
2834 3602 3.249752 CTCTGGGATGATCCTGGATCTT 58.750 50.000 30.97 26.23 39.56 2.40
2835 3603 3.651904 CTCTGGGATGATCCTGGATCTTT 59.348 47.826 30.97 20.97 39.56 2.52
2836 3604 4.831314 TCTGGGATGATCCTGGATCTTTA 58.169 43.478 30.97 16.10 39.56 1.85
2837 3605 4.594920 TCTGGGATGATCCTGGATCTTTAC 59.405 45.833 30.97 20.93 39.56 2.01
2838 3606 4.570926 TGGGATGATCCTGGATCTTTACT 58.429 43.478 30.97 14.50 39.56 2.24
2839 3607 4.977739 TGGGATGATCCTGGATCTTTACTT 59.022 41.667 30.97 13.17 39.56 2.24
2840 3608 5.433051 TGGGATGATCCTGGATCTTTACTTT 59.567 40.000 30.97 11.72 39.56 2.66
2841 3609 5.767168 GGGATGATCCTGGATCTTTACTTTG 59.233 44.000 30.97 0.00 39.56 2.77
2842 3610 5.240403 GGATGATCCTGGATCTTTACTTTGC 59.760 44.000 30.97 14.56 39.56 3.68
2843 3611 5.178096 TGATCCTGGATCTTTACTTTGCA 57.822 39.130 30.97 10.13 39.56 4.08
2844 3612 5.759059 TGATCCTGGATCTTTACTTTGCAT 58.241 37.500 30.97 0.00 39.56 3.96
2845 3613 5.824624 TGATCCTGGATCTTTACTTTGCATC 59.175 40.000 30.97 7.58 39.56 3.91
2864 3632 1.704628 TCTCCAAATGCAACTCTGGGA 59.295 47.619 0.00 0.00 0.00 4.37
2869 3637 3.067742 CCAAATGCAACTCTGGGATGATC 59.932 47.826 0.00 0.00 0.00 2.92
2885 3653 5.656416 GGGATGATCCTGACCATTTTGTTTA 59.344 40.000 11.87 0.00 36.57 2.01
2889 3660 8.599624 ATGATCCTGACCATTTTGTTTATCTT 57.400 30.769 0.00 0.00 0.00 2.40
2890 3661 7.829725 TGATCCTGACCATTTTGTTTATCTTG 58.170 34.615 0.00 0.00 0.00 3.02
2893 3664 8.698973 TCCTGACCATTTTGTTTATCTTGTTA 57.301 30.769 0.00 0.00 0.00 2.41
3118 7014 3.195825 CGTCAGGAGGATGAACTAGGTTT 59.804 47.826 0.00 0.00 34.22 3.27
3221 7120 6.747280 CAGTTTTGATATTTCGGAACCATGAC 59.253 38.462 0.00 0.00 0.00 3.06
3291 7204 3.931907 TTAATGCCTCCTGCTATGTGT 57.068 42.857 0.00 0.00 42.00 3.72
3424 8219 2.704725 TTTTCTGATTCGGCTTGCAC 57.295 45.000 0.00 0.00 0.00 4.57
3464 8270 6.528423 TGACTAAAACAAACAAACAACATCCG 59.472 34.615 0.00 0.00 0.00 4.18
3488 8630 2.181777 GATGAGCCGACGCAGACA 59.818 61.111 0.00 0.00 37.52 3.41
3492 8634 3.973267 GAGCCGACGCAGACAGACC 62.973 68.421 0.00 0.00 37.52 3.85
3494 8636 3.374402 CCGACGCAGACAGACCCT 61.374 66.667 0.00 0.00 0.00 4.34
3496 8638 1.384989 CCGACGCAGACAGACCCTAT 61.385 60.000 0.00 0.00 0.00 2.57
3498 8640 1.002684 CGACGCAGACAGACCCTATAC 60.003 57.143 0.00 0.00 0.00 1.47
3499 8641 1.002684 GACGCAGACAGACCCTATACG 60.003 57.143 0.00 0.00 0.00 3.06
3500 8642 1.306148 CGCAGACAGACCCTATACGA 58.694 55.000 0.00 0.00 0.00 3.43
3501 8643 1.674441 CGCAGACAGACCCTATACGAA 59.326 52.381 0.00 0.00 0.00 3.85
3503 8645 3.707793 GCAGACAGACCCTATACGAAAG 58.292 50.000 0.00 0.00 0.00 2.62
3504 8646 3.491104 GCAGACAGACCCTATACGAAAGG 60.491 52.174 0.00 0.00 0.00 3.11
3506 8648 4.401519 CAGACAGACCCTATACGAAAGGAA 59.598 45.833 0.00 0.00 36.08 3.36
3507 8649 5.021458 AGACAGACCCTATACGAAAGGAAA 58.979 41.667 0.00 0.00 36.08 3.13
3509 8651 4.776308 ACAGACCCTATACGAAAGGAAAGT 59.224 41.667 0.00 0.00 36.08 2.66
3543 8687 5.464588 TCCCACTCAAATCATTCCCATTA 57.535 39.130 0.00 0.00 0.00 1.90
3587 8731 3.993736 TGTCACACATTAACGATGACTGG 59.006 43.478 10.45 0.00 40.28 4.00
3606 8750 1.094785 GCCAACCATACGCTGAATGT 58.905 50.000 0.00 0.00 0.00 2.71
3673 8839 6.121776 ACAGTACATGTAAAGGTCATGGAA 57.878 37.500 7.25 0.00 44.57 3.53
3687 8853 8.525729 AAGGTCATGGAAAATATATACTCCCT 57.474 34.615 9.49 0.00 0.00 4.20
3688 8854 8.525729 AGGTCATGGAAAATATATACTCCCTT 57.474 34.615 9.49 0.00 0.00 3.95
3689 8855 8.960064 AGGTCATGGAAAATATATACTCCCTTT 58.040 33.333 9.49 0.00 0.00 3.11
3690 8856 9.014297 GGTCATGGAAAATATATACTCCCTTTG 57.986 37.037 9.49 6.19 0.00 2.77
3691 8857 9.574516 GTCATGGAAAATATATACTCCCTTTGT 57.425 33.333 9.49 0.00 0.00 2.83
3694 8860 8.990163 TGGAAAATATATACTCCCTTTGTTCC 57.010 34.615 9.49 0.00 0.00 3.62
3695 8861 8.787818 TGGAAAATATATACTCCCTTTGTTCCT 58.212 33.333 9.49 0.00 32.63 3.36
3726 8892 9.747898 ATAGGGTGTATAGTTTTTGACATGAAA 57.252 29.630 0.00 0.00 0.00 2.69
3727 8893 8.472007 AGGGTGTATAGTTTTTGACATGAAAA 57.528 30.769 0.00 0.00 0.00 2.29
3728 8894 9.088987 AGGGTGTATAGTTTTTGACATGAAAAT 57.911 29.630 0.00 0.00 0.00 1.82
3729 8895 9.705290 GGGTGTATAGTTTTTGACATGAAAATT 57.295 29.630 0.00 0.00 0.00 1.82
3741 8907 8.883954 TTGACATGAAAATTAAAGAATGCACA 57.116 26.923 0.00 0.00 0.00 4.57
3742 8908 9.491675 TTGACATGAAAATTAAAGAATGCACAT 57.508 25.926 0.00 0.00 0.00 3.21
3743 8909 8.927721 TGACATGAAAATTAAAGAATGCACATG 58.072 29.630 0.00 0.00 36.53 3.21
3744 8910 8.259049 ACATGAAAATTAAAGAATGCACATGG 57.741 30.769 0.00 0.00 35.76 3.66
3745 8911 8.095792 ACATGAAAATTAAAGAATGCACATGGA 58.904 29.630 0.00 0.00 35.76 3.41
3746 8912 8.600625 CATGAAAATTAAAGAATGCACATGGAG 58.399 33.333 0.00 0.00 32.25 3.86
3747 8913 7.098477 TGAAAATTAAAGAATGCACATGGAGG 58.902 34.615 0.00 0.00 0.00 4.30
3748 8914 6.855763 AAATTAAAGAATGCACATGGAGGA 57.144 33.333 0.00 0.00 0.00 3.71
3749 8915 6.855763 AATTAAAGAATGCACATGGAGGAA 57.144 33.333 0.00 0.00 0.00 3.36
3750 8916 6.855763 ATTAAAGAATGCACATGGAGGAAA 57.144 33.333 0.00 0.00 0.00 3.13
3751 8917 6.662865 TTAAAGAATGCACATGGAGGAAAA 57.337 33.333 0.00 0.00 0.00 2.29
3752 8918 5.549742 AAAGAATGCACATGGAGGAAAAA 57.450 34.783 0.00 0.00 0.00 1.94
3753 8919 5.750352 AAGAATGCACATGGAGGAAAAAT 57.250 34.783 0.00 0.00 0.00 1.82
3754 8920 5.750352 AGAATGCACATGGAGGAAAAATT 57.250 34.783 0.00 0.00 0.00 1.82
3755 8921 6.117975 AGAATGCACATGGAGGAAAAATTT 57.882 33.333 0.00 0.00 0.00 1.82
3756 8922 6.168389 AGAATGCACATGGAGGAAAAATTTC 58.832 36.000 0.00 0.00 36.46 2.17
3757 8923 4.952071 TGCACATGGAGGAAAAATTTCA 57.048 36.364 8.06 0.00 38.92 2.69
3758 8924 4.630111 TGCACATGGAGGAAAAATTTCAC 58.370 39.130 8.06 2.03 38.92 3.18
3759 8925 3.674753 GCACATGGAGGAAAAATTTCACG 59.325 43.478 8.06 0.00 38.92 4.35
3760 8926 4.558496 GCACATGGAGGAAAAATTTCACGA 60.558 41.667 8.06 0.33 38.92 4.35
3761 8927 5.156355 CACATGGAGGAAAAATTTCACGAG 58.844 41.667 8.06 0.00 38.92 4.18
3762 8928 4.827284 ACATGGAGGAAAAATTTCACGAGT 59.173 37.500 8.06 0.00 38.92 4.18
3763 8929 5.301805 ACATGGAGGAAAAATTTCACGAGTT 59.698 36.000 8.06 0.00 38.92 3.01
3764 8930 5.845391 TGGAGGAAAAATTTCACGAGTTT 57.155 34.783 8.06 0.00 38.92 2.66
3765 8931 6.215495 TGGAGGAAAAATTTCACGAGTTTT 57.785 33.333 8.06 0.00 38.92 2.43
3766 8932 6.039616 TGGAGGAAAAATTTCACGAGTTTTG 58.960 36.000 8.06 0.00 38.92 2.44
3767 8933 5.462068 GGAGGAAAAATTTCACGAGTTTTGG 59.538 40.000 8.06 0.00 38.92 3.28
3768 8934 5.356426 AGGAAAAATTTCACGAGTTTTGGG 58.644 37.500 8.06 0.00 38.92 4.12
3769 8935 4.025229 GGAAAAATTTCACGAGTTTTGGGC 60.025 41.667 8.06 0.00 38.92 5.36
3770 8936 3.810310 AAATTTCACGAGTTTTGGGCA 57.190 38.095 0.00 0.00 0.00 5.36
3771 8937 3.810310 AATTTCACGAGTTTTGGGCAA 57.190 38.095 0.00 0.00 0.00 4.52
3772 8938 2.861462 TTTCACGAGTTTTGGGCAAG 57.139 45.000 0.00 0.00 0.00 4.01
3773 8939 2.045561 TTCACGAGTTTTGGGCAAGA 57.954 45.000 0.00 0.00 0.00 3.02
3774 8940 2.270352 TCACGAGTTTTGGGCAAGAT 57.730 45.000 0.00 0.00 0.00 2.40
3775 8941 2.582052 TCACGAGTTTTGGGCAAGATT 58.418 42.857 0.00 0.00 0.00 2.40
3776 8942 3.745799 TCACGAGTTTTGGGCAAGATTA 58.254 40.909 0.00 0.00 0.00 1.75
3777 8943 4.331968 TCACGAGTTTTGGGCAAGATTAT 58.668 39.130 0.00 0.00 0.00 1.28
3778 8944 5.492895 TCACGAGTTTTGGGCAAGATTATA 58.507 37.500 0.00 0.00 0.00 0.98
3779 8945 5.353123 TCACGAGTTTTGGGCAAGATTATAC 59.647 40.000 0.00 0.00 0.00 1.47
3780 8946 4.638865 ACGAGTTTTGGGCAAGATTATACC 59.361 41.667 0.00 0.00 0.00 2.73
3781 8947 4.260620 CGAGTTTTGGGCAAGATTATACCG 60.261 45.833 0.00 0.00 0.00 4.02
3782 8948 4.850680 AGTTTTGGGCAAGATTATACCGA 58.149 39.130 0.00 0.00 0.00 4.69
3783 8949 5.258051 AGTTTTGGGCAAGATTATACCGAA 58.742 37.500 0.00 0.00 0.00 4.30
3784 8950 5.124936 AGTTTTGGGCAAGATTATACCGAAC 59.875 40.000 0.00 0.00 0.00 3.95
3785 8951 4.497291 TTGGGCAAGATTATACCGAACT 57.503 40.909 0.00 0.00 0.00 3.01
3786 8952 5.617528 TTGGGCAAGATTATACCGAACTA 57.382 39.130 0.00 0.00 0.00 2.24
3787 8953 5.617528 TGGGCAAGATTATACCGAACTAA 57.382 39.130 0.00 0.00 0.00 2.24
3788 8954 6.182507 TGGGCAAGATTATACCGAACTAAT 57.817 37.500 0.00 0.00 0.00 1.73
3789 8955 6.597562 TGGGCAAGATTATACCGAACTAATT 58.402 36.000 0.00 0.00 0.00 1.40
3790 8956 6.485313 TGGGCAAGATTATACCGAACTAATTG 59.515 38.462 0.00 0.00 0.00 2.32
3791 8957 6.708949 GGGCAAGATTATACCGAACTAATTGA 59.291 38.462 0.00 0.00 0.00 2.57
3792 8958 7.307811 GGGCAAGATTATACCGAACTAATTGAC 60.308 40.741 0.00 0.00 0.00 3.18
3793 8959 7.225931 GGCAAGATTATACCGAACTAATTGACA 59.774 37.037 0.00 0.00 0.00 3.58
3794 8960 8.774586 GCAAGATTATACCGAACTAATTGACAT 58.225 33.333 0.00 0.00 0.00 3.06
3812 8978 9.692325 AATTGACATTAGAAAATAGAGGAGCTT 57.308 29.630 0.00 0.00 0.00 3.74
3813 8979 8.498054 TTGACATTAGAAAATAGAGGAGCTTG 57.502 34.615 0.00 0.00 0.00 4.01
3814 8980 6.540189 TGACATTAGAAAATAGAGGAGCTTGC 59.460 38.462 0.00 0.00 0.00 4.01
3815 8981 5.825151 ACATTAGAAAATAGAGGAGCTTGCC 59.175 40.000 0.00 0.00 0.00 4.52
3816 8982 5.700402 TTAGAAAATAGAGGAGCTTGCCT 57.300 39.130 0.00 0.00 42.17 4.75
3817 8983 6.808321 TTAGAAAATAGAGGAGCTTGCCTA 57.192 37.500 0.00 0.00 38.73 3.93
3818 8984 5.700402 AGAAAATAGAGGAGCTTGCCTAA 57.300 39.130 0.00 0.00 38.73 2.69
3819 8985 6.259346 AGAAAATAGAGGAGCTTGCCTAAT 57.741 37.500 0.00 0.00 38.73 1.73
3820 8986 7.380423 AGAAAATAGAGGAGCTTGCCTAATA 57.620 36.000 0.00 0.00 38.73 0.98
3821 8987 7.983363 AGAAAATAGAGGAGCTTGCCTAATAT 58.017 34.615 0.00 0.00 38.73 1.28
3822 8988 9.105844 AGAAAATAGAGGAGCTTGCCTAATATA 57.894 33.333 0.00 0.00 38.73 0.86
3823 8989 9.377312 GAAAATAGAGGAGCTTGCCTAATATAG 57.623 37.037 0.00 0.00 38.73 1.31
3824 8990 8.671987 AAATAGAGGAGCTTGCCTAATATAGA 57.328 34.615 0.00 0.00 38.73 1.98
3825 8991 7.896383 ATAGAGGAGCTTGCCTAATATAGAG 57.104 40.000 0.00 0.00 38.73 2.43
3826 8992 5.898120 AGAGGAGCTTGCCTAATATAGAGA 58.102 41.667 0.00 0.00 38.73 3.10
3827 8993 6.318913 AGAGGAGCTTGCCTAATATAGAGAA 58.681 40.000 0.00 0.00 38.73 2.87
3828 8994 6.784969 AGAGGAGCTTGCCTAATATAGAGAAA 59.215 38.462 0.00 0.00 38.73 2.52
3829 8995 7.457535 AGAGGAGCTTGCCTAATATAGAGAAAT 59.542 37.037 0.00 0.00 38.73 2.17
3830 8996 7.393216 AGGAGCTTGCCTAATATAGAGAAATG 58.607 38.462 0.00 0.00 36.22 2.32
3831 8997 7.017056 AGGAGCTTGCCTAATATAGAGAAATGT 59.983 37.037 0.00 0.00 36.22 2.71
3832 8998 8.314751 GGAGCTTGCCTAATATAGAGAAATGTA 58.685 37.037 0.00 0.00 0.00 2.29
3833 8999 9.712305 GAGCTTGCCTAATATAGAGAAATGTAA 57.288 33.333 0.00 0.00 0.00 2.41
3869 9035 6.399639 AAAAATTATCCAAACGAGTGGTGT 57.600 33.333 8.62 3.18 39.88 4.16
3870 9036 7.513371 AAAAATTATCCAAACGAGTGGTGTA 57.487 32.000 8.62 2.41 39.88 2.90
3871 9037 7.513371 AAAATTATCCAAACGAGTGGTGTAA 57.487 32.000 8.62 9.32 39.88 2.41
3872 9038 6.490566 AATTATCCAAACGAGTGGTGTAAC 57.509 37.500 8.62 0.00 39.88 2.50
3873 9039 2.983907 TCCAAACGAGTGGTGTAACA 57.016 45.000 8.62 0.00 39.98 2.41
3874 9040 3.478857 TCCAAACGAGTGGTGTAACAT 57.521 42.857 8.62 0.00 39.98 2.71
3875 9041 4.603989 TCCAAACGAGTGGTGTAACATA 57.396 40.909 8.62 0.00 39.98 2.29
3876 9042 4.958509 TCCAAACGAGTGGTGTAACATAA 58.041 39.130 8.62 0.00 39.98 1.90
3877 9043 5.553123 TCCAAACGAGTGGTGTAACATAAT 58.447 37.500 8.62 0.00 39.98 1.28
3878 9044 6.699366 TCCAAACGAGTGGTGTAACATAATA 58.301 36.000 8.62 0.00 39.98 0.98
3879 9045 6.591062 TCCAAACGAGTGGTGTAACATAATAC 59.409 38.462 8.62 0.00 39.98 1.89
3880 9046 6.369340 CCAAACGAGTGGTGTAACATAATACA 59.631 38.462 0.00 0.00 39.98 2.29
3933 9099 8.995027 ATTTATATGCCTTGTATCAAGGAACA 57.005 30.769 26.37 17.69 39.81 3.18
3934 9100 8.450578 TTTATATGCCTTGTATCAAGGAACAG 57.549 34.615 26.37 5.75 39.81 3.16
3935 9101 4.574674 ATGCCTTGTATCAAGGAACAGA 57.425 40.909 26.37 8.99 39.81 3.41
3936 9102 3.942829 TGCCTTGTATCAAGGAACAGAG 58.057 45.455 26.37 4.56 39.81 3.35
3937 9103 3.274288 GCCTTGTATCAAGGAACAGAGG 58.726 50.000 26.37 4.53 39.81 3.69
3938 9104 3.878778 CCTTGTATCAAGGAACAGAGGG 58.121 50.000 19.98 0.00 39.81 4.30
3939 9105 3.519510 CCTTGTATCAAGGAACAGAGGGA 59.480 47.826 19.98 0.00 39.81 4.20
3940 9106 4.383552 CCTTGTATCAAGGAACAGAGGGAG 60.384 50.000 19.98 0.00 39.81 4.30
3950 9336 7.789831 TCAAGGAACAGAGGGAGTATTATACAT 59.210 37.037 5.11 0.00 0.00 2.29
3952 9338 7.306013 AGGAACAGAGGGAGTATTATACATCA 58.694 38.462 5.11 0.00 0.00 3.07
3997 9384 4.471386 CCCCACTCAAATCCTCTTAAGAGA 59.529 45.833 30.17 17.79 44.74 3.10
3998 9385 5.131809 CCCCACTCAAATCCTCTTAAGAGAT 59.868 44.000 30.17 19.03 44.74 2.75
4001 9388 6.352565 CCACTCAAATCCTCTTAAGAGATGGT 60.353 42.308 30.17 18.33 44.74 3.55
4003 9390 7.279758 CACTCAAATCCTCTTAAGAGATGGTTC 59.720 40.741 30.17 0.00 44.74 3.62
4004 9391 7.181845 ACTCAAATCCTCTTAAGAGATGGTTCT 59.818 37.037 30.17 7.99 44.74 3.01
4015 9402 2.629336 GATGGTTCTCATCCCCACTC 57.371 55.000 0.00 0.00 44.92 3.51
4016 9403 1.839994 GATGGTTCTCATCCCCACTCA 59.160 52.381 0.00 0.00 44.92 3.41
4017 9404 1.741028 TGGTTCTCATCCCCACTCAA 58.259 50.000 0.00 0.00 0.00 3.02
4018 9405 1.630369 TGGTTCTCATCCCCACTCAAG 59.370 52.381 0.00 0.00 0.00 3.02
4019 9406 1.630878 GGTTCTCATCCCCACTCAAGT 59.369 52.381 0.00 0.00 0.00 3.16
4020 9407 2.355209 GGTTCTCATCCCCACTCAAGTC 60.355 54.545 0.00 0.00 0.00 3.01
4021 9408 1.573108 TCTCATCCCCACTCAAGTCC 58.427 55.000 0.00 0.00 0.00 3.85
4022 9409 1.079490 TCTCATCCCCACTCAAGTCCT 59.921 52.381 0.00 0.00 0.00 3.85
4023 9410 1.484240 CTCATCCCCACTCAAGTCCTC 59.516 57.143 0.00 0.00 0.00 3.71
4024 9411 1.079490 TCATCCCCACTCAAGTCCTCT 59.921 52.381 0.00 0.00 0.00 3.69
4025 9412 1.912043 CATCCCCACTCAAGTCCTCTT 59.088 52.381 0.00 0.00 0.00 2.85
4026 9413 3.107601 CATCCCCACTCAAGTCCTCTTA 58.892 50.000 0.00 0.00 32.07 2.10
4027 9414 3.269592 TCCCCACTCAAGTCCTCTTAA 57.730 47.619 0.00 0.00 32.07 1.85
4028 9415 3.173965 TCCCCACTCAAGTCCTCTTAAG 58.826 50.000 0.00 0.00 32.07 1.85
4029 9416 3.173965 CCCCACTCAAGTCCTCTTAAGA 58.826 50.000 4.81 4.81 32.07 2.10
4030 9417 3.583086 CCCCACTCAAGTCCTCTTAAGAA 59.417 47.826 6.63 0.00 32.07 2.52
4031 9418 4.041691 CCCCACTCAAGTCCTCTTAAGAAA 59.958 45.833 6.63 0.00 32.07 2.52
4032 9419 5.280727 CCCCACTCAAGTCCTCTTAAGAAAT 60.281 44.000 6.63 0.00 32.07 2.17
4033 9420 5.645497 CCCACTCAAGTCCTCTTAAGAAATG 59.355 44.000 6.63 2.12 32.07 2.32
4034 9421 5.645497 CCACTCAAGTCCTCTTAAGAAATGG 59.355 44.000 6.63 4.81 32.07 3.16
4035 9422 5.123027 CACTCAAGTCCTCTTAAGAAATGGC 59.877 44.000 6.63 0.00 32.07 4.40
4036 9423 5.013599 ACTCAAGTCCTCTTAAGAAATGGCT 59.986 40.000 6.63 2.36 32.07 4.75
4037 9424 5.491982 TCAAGTCCTCTTAAGAAATGGCTC 58.508 41.667 6.63 2.32 32.07 4.70
4038 9425 4.130286 AGTCCTCTTAAGAAATGGCTCG 57.870 45.455 6.63 0.00 0.00 5.03
4039 9426 3.515901 AGTCCTCTTAAGAAATGGCTCGT 59.484 43.478 6.63 0.00 0.00 4.18
4040 9427 3.866327 GTCCTCTTAAGAAATGGCTCGTC 59.134 47.826 6.63 0.00 0.00 4.20
4041 9428 3.118738 TCCTCTTAAGAAATGGCTCGTCC 60.119 47.826 6.63 0.00 0.00 4.79
4042 9429 3.118592 CCTCTTAAGAAATGGCTCGTCCT 60.119 47.826 6.63 0.00 35.26 3.85
4043 9430 4.116238 CTCTTAAGAAATGGCTCGTCCTC 58.884 47.826 6.63 0.00 35.26 3.71
4053 9440 3.215151 TGGCTCGTCCTCAGTATTAGAG 58.785 50.000 0.00 0.00 35.26 2.43
4067 9454 6.325028 TCAGTATTAGAGCAACTAGAGGCAAT 59.675 38.462 11.78 6.47 32.30 3.56
4103 9490 5.243981 CGATGAGCAGAATTGGATTAGGAT 58.756 41.667 0.00 0.00 0.00 3.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
15 16 1.808945 CTTCGCTGCAGAATTGGAGTT 59.191 47.619 20.43 0.00 43.95 3.01
21 22 0.953727 TGTTGCTTCGCTGCAGAATT 59.046 45.000 20.43 0.00 44.27 2.17
32 33 5.376854 TCTTTAGCTGGATTTGTTGCTTC 57.623 39.130 0.00 0.00 37.02 3.86
45 46 4.212214 GGTGTTCAGTGACTTCTTTAGCTG 59.788 45.833 0.00 0.00 0.00 4.24
200 203 2.050077 GAAGGCGTTGCTTGTGGC 60.050 61.111 0.00 0.00 42.22 5.01
228 232 0.031178 GCAATGAACCCATCGCATCC 59.969 55.000 0.00 0.00 33.08 3.51
234 238 2.163010 CACACTCAGCAATGAACCCATC 59.837 50.000 0.00 0.00 31.40 3.51
244 248 0.836606 TCACCCTTCACACTCAGCAA 59.163 50.000 0.00 0.00 0.00 3.91
247 251 2.760374 GTTCTCACCCTTCACACTCAG 58.240 52.381 0.00 0.00 0.00 3.35
251 255 1.340248 TCTCGTTCTCACCCTTCACAC 59.660 52.381 0.00 0.00 0.00 3.82
252 256 1.699730 TCTCGTTCTCACCCTTCACA 58.300 50.000 0.00 0.00 0.00 3.58
253 257 2.732597 CGATCTCGTTCTCACCCTTCAC 60.733 54.545 0.00 0.00 34.11 3.18
254 258 1.472878 CGATCTCGTTCTCACCCTTCA 59.527 52.381 0.00 0.00 34.11 3.02
437 467 0.040204 CAAACAGCTCCCATTCCCCT 59.960 55.000 0.00 0.00 0.00 4.79
444 474 0.257328 TGTTCACCAAACAGCTCCCA 59.743 50.000 0.00 0.00 42.95 4.37
470 505 1.040893 TCTCCATCCGCGCCTCTTTA 61.041 55.000 0.00 0.00 0.00 1.85
513 550 2.837291 CCTCCTGCTCTCCTCCGG 60.837 72.222 0.00 0.00 0.00 5.14
625 676 4.430423 CAACTGCTTCGCGGACGC 62.430 66.667 6.13 6.63 38.46 5.19
626 677 4.430423 GCAACTGCTTCGCGGACG 62.430 66.667 6.13 0.00 38.46 4.79
627 678 4.430423 CGCAACTGCTTCGCGGAC 62.430 66.667 6.13 0.00 45.08 4.79
656 713 0.391927 TAACGTTTCGGCCCATCTGG 60.392 55.000 5.91 0.00 37.09 3.86
657 714 0.725117 GTAACGTTTCGGCCCATCTG 59.275 55.000 5.91 0.00 0.00 2.90
667 724 2.975193 GGTCCATTTTGCGTAACGTTTC 59.025 45.455 5.91 0.00 0.00 2.78
669 760 1.069771 CGGTCCATTTTGCGTAACGTT 60.070 47.619 5.88 5.88 0.00 3.99
673 764 2.350964 GCTTTCGGTCCATTTTGCGTAA 60.351 45.455 0.00 0.00 0.00 3.18
680 771 1.305930 GGCTCGCTTTCGGTCCATTT 61.306 55.000 0.00 0.00 36.13 2.32
681 772 1.745489 GGCTCGCTTTCGGTCCATT 60.745 57.895 0.00 0.00 36.13 3.16
682 773 2.125106 GGCTCGCTTTCGGTCCAT 60.125 61.111 0.00 0.00 36.13 3.41
685 776 1.153549 ATGAGGCTCGCTTTCGGTC 60.154 57.895 10.42 0.00 36.13 4.79
686 777 1.448540 CATGAGGCTCGCTTTCGGT 60.449 57.895 10.42 0.00 36.13 4.69
687 778 2.176273 CCATGAGGCTCGCTTTCGG 61.176 63.158 10.42 0.00 36.13 4.30
688 779 1.424493 GACCATGAGGCTCGCTTTCG 61.424 60.000 10.42 0.00 39.06 3.46
689 780 1.092345 GGACCATGAGGCTCGCTTTC 61.092 60.000 10.42 3.88 39.06 2.62
691 784 1.630126 ATGGACCATGAGGCTCGCTT 61.630 55.000 6.06 0.00 39.06 4.68
700 793 4.325265 GGCCCATATTATGATGGACCATGA 60.325 45.833 12.99 3.14 46.18 3.07
701 794 3.956199 GGCCCATATTATGATGGACCATG 59.044 47.826 12.99 0.00 46.18 3.66
703 796 3.737559 GGCCCATATTATGATGGACCA 57.262 47.619 5.21 0.00 46.18 4.02
852 945 0.738389 GAGGCGAGACAGAGGAAGAG 59.262 60.000 0.00 0.00 0.00 2.85
853 946 0.681564 GGAGGCGAGACAGAGGAAGA 60.682 60.000 0.00 0.00 0.00 2.87
856 949 1.077357 GAGGAGGCGAGACAGAGGA 60.077 63.158 0.00 0.00 0.00 3.71
862 955 2.835895 GGAGGGAGGAGGCGAGAC 60.836 72.222 0.00 0.00 0.00 3.36
923 1018 3.136123 CTGGTGCGATGCTTGGGG 61.136 66.667 0.00 0.00 0.00 4.96
924 1019 3.136123 CCTGGTGCGATGCTTGGG 61.136 66.667 0.00 0.00 0.00 4.12
925 1020 3.136123 CCCTGGTGCGATGCTTGG 61.136 66.667 0.00 0.00 0.00 3.61
927 1022 3.650298 ATGCCCTGGTGCGATGCTT 62.650 57.895 0.00 0.00 0.00 3.91
929 1024 2.713967 AAATGCCCTGGTGCGATGC 61.714 57.895 0.00 0.00 0.00 3.91
930 1025 1.140161 CAAATGCCCTGGTGCGATG 59.860 57.895 0.00 0.00 0.00 3.84
936 1031 1.304713 CAGGAGCAAATGCCCTGGT 60.305 57.895 23.93 0.45 46.46 4.00
961 1056 2.765807 CCAGGGTCAGATCCGGCT 60.766 66.667 0.00 0.00 0.00 5.52
1021 1116 4.082523 CGACTCCGGCACCACCAT 62.083 66.667 0.00 0.00 39.03 3.55
1211 1311 2.202892 GAACGAGCGCTAAGGGGG 60.203 66.667 11.50 0.00 0.00 5.40
1261 1406 0.238289 ATCCGACAAAGCGCAACTTG 59.762 50.000 11.47 12.70 39.09 3.16
1263 1408 0.320771 AGATCCGACAAAGCGCAACT 60.321 50.000 11.47 0.00 0.00 3.16
1265 1410 0.602638 ACAGATCCGACAAAGCGCAA 60.603 50.000 11.47 0.00 0.00 4.85
1286 1433 4.043200 GCAGACAAACGGGGCAGC 62.043 66.667 0.00 0.00 0.00 5.25
1300 1447 2.086869 ACAATCTGAAATCCACCGCAG 58.913 47.619 0.00 0.00 0.00 5.18
1320 1468 1.947146 CACGGACAAACGTCGAGCA 60.947 57.895 0.00 0.00 46.75 4.26
1321 1469 1.485032 AACACGGACAAACGTCGAGC 61.485 55.000 0.00 0.00 46.75 5.03
1325 1473 4.662394 CGATCTAAAACACGGACAAACGTC 60.662 45.833 0.00 0.00 46.75 4.34
1332 1483 3.442100 CCTACCGATCTAAAACACGGAC 58.558 50.000 11.27 0.00 46.94 4.79
1336 1487 3.858247 AGTGCCTACCGATCTAAAACAC 58.142 45.455 0.00 0.00 0.00 3.32
1340 1491 2.737359 CGCAAGTGCCTACCGATCTAAA 60.737 50.000 0.00 0.00 37.91 1.85
1341 1492 1.202371 CGCAAGTGCCTACCGATCTAA 60.202 52.381 0.00 0.00 37.91 2.10
1361 1512 3.545633 GGAAAGCGAATATTGCATCGAC 58.454 45.455 11.43 3.25 41.43 4.20
1363 1514 2.032894 ACGGAAAGCGAATATTGCATCG 60.033 45.455 3.09 3.09 41.81 3.84
1368 1519 3.291585 GCATCACGGAAAGCGAATATTG 58.708 45.455 0.00 0.00 0.00 1.90
1382 1535 3.560278 GGTTACCGCGGCATCACG 61.560 66.667 28.58 0.00 0.00 4.35
1393 1546 1.541379 ACGGGCATTTTCAGGTTACC 58.459 50.000 0.00 0.00 0.00 2.85
1396 1549 2.579410 ACTACGGGCATTTTCAGGTT 57.421 45.000 0.00 0.00 0.00 3.50
1401 1554 3.681417 ACTACGAAACTACGGGCATTTTC 59.319 43.478 0.00 0.00 37.61 2.29
1402 1555 3.434299 CACTACGAAACTACGGGCATTTT 59.566 43.478 0.00 0.00 37.61 1.82
1424 1577 7.042335 ACATCAACATACTAAGTTCTGCTACC 58.958 38.462 0.00 0.00 0.00 3.18
1452 1647 4.494199 GCAGCATCACGAAAACTATACCAC 60.494 45.833 0.00 0.00 0.00 4.16
1453 1648 3.621268 GCAGCATCACGAAAACTATACCA 59.379 43.478 0.00 0.00 0.00 3.25
1454 1649 3.621268 TGCAGCATCACGAAAACTATACC 59.379 43.478 0.00 0.00 0.00 2.73
1455 1650 4.857871 TGCAGCATCACGAAAACTATAC 57.142 40.909 0.00 0.00 0.00 1.47
1456 1651 4.260743 GCATGCAGCATCACGAAAACTATA 60.261 41.667 14.21 0.00 44.79 1.31
1457 1652 3.488047 GCATGCAGCATCACGAAAACTAT 60.488 43.478 14.21 0.00 44.79 2.12
1458 1653 2.159531 GCATGCAGCATCACGAAAACTA 60.160 45.455 14.21 0.00 44.79 2.24
1459 1654 1.401931 GCATGCAGCATCACGAAAACT 60.402 47.619 14.21 0.00 44.79 2.66
1460 1655 0.986992 GCATGCAGCATCACGAAAAC 59.013 50.000 14.21 0.00 44.79 2.43
1461 1656 3.404978 GCATGCAGCATCACGAAAA 57.595 47.368 14.21 0.00 44.79 2.29
1464 1659 3.787795 ATGGAGCATGCAGCATCACGA 62.788 52.381 21.98 0.00 42.42 4.35
1465 1660 1.444917 ATGGAGCATGCAGCATCACG 61.445 55.000 21.98 0.00 42.42 4.35
1466 1661 0.030773 CATGGAGCATGCAGCATCAC 59.969 55.000 21.98 0.30 42.42 3.06
1467 1662 2.414750 CATGGAGCATGCAGCATCA 58.585 52.632 21.98 10.38 42.42 3.07
1478 1673 1.945394 CTACACAGAATGGCATGGAGC 59.055 52.381 0.00 0.00 43.62 4.70
1479 1674 3.464907 CTCTACACAGAATGGCATGGAG 58.535 50.000 0.00 0.00 43.62 3.86
1480 1675 2.171237 CCTCTACACAGAATGGCATGGA 59.829 50.000 0.00 0.00 43.62 3.41
1481 1676 2.092753 ACCTCTACACAGAATGGCATGG 60.093 50.000 0.00 0.00 43.62 3.66
1482 1677 3.272574 ACCTCTACACAGAATGGCATG 57.727 47.619 0.00 0.00 43.62 4.06
1483 1678 5.130975 TCATTACCTCTACACAGAATGGCAT 59.869 40.000 0.00 0.00 43.62 4.40
1484 1679 4.469586 TCATTACCTCTACACAGAATGGCA 59.530 41.667 0.00 0.00 43.62 4.92
1485 1680 4.811557 GTCATTACCTCTACACAGAATGGC 59.188 45.833 0.00 0.00 43.62 4.40
1486 1681 5.360591 GGTCATTACCTCTACACAGAATGG 58.639 45.833 0.00 0.00 41.44 3.16
1501 1696 3.487120 AAATCCGGCCTAGGTCATTAC 57.513 47.619 15.12 0.00 0.00 1.89
1502 1697 3.815809 CAAAATCCGGCCTAGGTCATTA 58.184 45.455 15.12 0.00 0.00 1.90
1503 1698 2.654863 CAAAATCCGGCCTAGGTCATT 58.345 47.619 15.12 3.47 0.00 2.57
1504 1699 1.750682 GCAAAATCCGGCCTAGGTCAT 60.751 52.381 15.12 0.00 0.00 3.06
1505 1700 0.393808 GCAAAATCCGGCCTAGGTCA 60.394 55.000 15.12 0.00 0.00 4.02
1539 1734 1.788344 GCTGCTCGTTCGATTGCTTTC 60.788 52.381 7.66 0.00 0.00 2.62
1544 1739 2.532531 AAATGCTGCTCGTTCGATTG 57.467 45.000 0.00 0.00 0.00 2.67
1549 1744 3.188460 TCACCTTAAAATGCTGCTCGTTC 59.812 43.478 0.00 0.00 0.00 3.95
1553 1748 6.268566 CCTAAATCACCTTAAAATGCTGCTC 58.731 40.000 0.00 0.00 0.00 4.26
1554 1749 5.394553 GCCTAAATCACCTTAAAATGCTGCT 60.395 40.000 0.00 0.00 0.00 4.24
1556 1751 5.036737 CGCCTAAATCACCTTAAAATGCTG 58.963 41.667 0.00 0.00 0.00 4.41
1558 1753 4.993905 ACGCCTAAATCACCTTAAAATGC 58.006 39.130 0.00 0.00 0.00 3.56
1562 1757 9.984190 AAAATTAAACGCCTAAATCACCTTAAA 57.016 25.926 0.00 0.00 0.00 1.52
1614 1809 3.953612 TGAACAAAGCTCCAACAACTCAT 59.046 39.130 0.00 0.00 0.00 2.90
1616 1811 4.370364 TTGAACAAAGCTCCAACAACTC 57.630 40.909 0.00 0.00 0.00 3.01
1625 1820 3.182372 GGCGTCAAATTTGAACAAAGCTC 59.818 43.478 22.07 6.76 39.21 4.09
1662 1895 8.674263 TTCCATCAAGCAAACATAAACATTTT 57.326 26.923 0.00 0.00 0.00 1.82
1671 1904 6.381994 AGGTAATGATTCCATCAAGCAAACAT 59.618 34.615 0.00 0.00 43.50 2.71
1675 1908 7.013559 CACATAGGTAATGATTCCATCAAGCAA 59.986 37.037 0.00 0.00 43.50 3.91
1694 1971 2.926200 CGTTCTCAGAAGCACACATAGG 59.074 50.000 0.00 0.00 0.00 2.57
1696 1973 3.660501 ACGTTCTCAGAAGCACACATA 57.339 42.857 0.00 0.00 0.00 2.29
1698 1975 2.309528 AACGTTCTCAGAAGCACACA 57.690 45.000 0.00 0.00 0.00 3.72
1699 1976 3.309954 AGAAAACGTTCTCAGAAGCACAC 59.690 43.478 4.14 0.00 40.18 3.82
1709 1986 3.495001 AGCTAACAGCAGAAAACGTTCTC 59.505 43.478 0.00 0.00 45.56 2.87
1711 1988 3.879932 AGCTAACAGCAGAAAACGTTC 57.120 42.857 0.00 0.00 45.56 3.95
1717 1994 5.067674 ACATTTGACAAGCTAACAGCAGAAA 59.932 36.000 0.38 0.00 45.56 2.52
1726 2003 8.335532 AGCATTAAGTACATTTGACAAGCTAA 57.664 30.769 0.00 0.00 0.00 3.09
1733 2010 5.796350 ACCGAGCATTAAGTACATTTGAC 57.204 39.130 0.00 0.00 0.00 3.18
1734 2011 6.607689 CAAACCGAGCATTAAGTACATTTGA 58.392 36.000 0.00 0.00 0.00 2.69
1752 2035 0.318107 CTTGTCCTGCAAGCAAACCG 60.318 55.000 0.00 0.00 46.68 4.44
1816 2099 1.951209 TGGCCTCAGGACTGACATAA 58.049 50.000 3.32 0.00 35.46 1.90
1834 2117 2.097954 TCTGACAACAAACAGCAGCTTG 59.902 45.455 0.00 0.00 34.57 4.01
1883 2166 5.221601 CCACTCCATATCACAAGATACAGCT 60.222 44.000 0.00 0.00 39.43 4.24
1884 2167 4.993584 CCACTCCATATCACAAGATACAGC 59.006 45.833 0.00 0.00 39.43 4.40
1894 2177 4.818546 CCAGAAATGACCACTCCATATCAC 59.181 45.833 0.00 0.00 0.00 3.06
1902 2189 4.327680 ACTTAAGCCAGAAATGACCACTC 58.672 43.478 1.29 0.00 0.00 3.51
1903 2190 4.373156 ACTTAAGCCAGAAATGACCACT 57.627 40.909 1.29 0.00 0.00 4.00
1907 2194 3.838120 GCCAACTTAAGCCAGAAATGAC 58.162 45.455 1.29 0.00 0.00 3.06
1927 2217 7.545265 TGCATGAGACATTTAACAAAATTAGGC 59.455 33.333 0.00 0.00 0.00 3.93
1928 2218 8.984891 TGCATGAGACATTTAACAAAATTAGG 57.015 30.769 0.00 0.00 0.00 2.69
1939 2230 6.016860 GGCATTGATACTGCATGAGACATTTA 60.017 38.462 0.00 0.00 41.47 1.40
2015 2307 2.243602 AGCAACAAATTGGCCAACTG 57.756 45.000 23.27 22.62 36.23 3.16
2016 2308 2.093021 ACAAGCAACAAATTGGCCAACT 60.093 40.909 23.27 7.10 36.23 3.16
2033 2325 3.007290 TGAGGAGATGGACTTGACACAAG 59.993 47.826 9.51 9.51 0.00 3.16
2068 2360 9.860898 GCAATAATTTAAAACAAGAGATGGACT 57.139 29.630 0.00 0.00 0.00 3.85
2084 2376 9.177608 AGAATGAGCACAAGTAGCAATAATTTA 57.822 29.630 0.00 0.00 0.00 1.40
2089 2381 5.491070 ACAGAATGAGCACAAGTAGCAATA 58.509 37.500 0.00 0.00 39.69 1.90
2093 2386 4.932200 ACTAACAGAATGAGCACAAGTAGC 59.068 41.667 0.00 0.00 39.69 3.58
2094 2387 6.425114 ACAACTAACAGAATGAGCACAAGTAG 59.575 38.462 0.00 0.00 39.69 2.57
2109 2402 6.618287 TCTGTCCAATCAAACAACTAACAG 57.382 37.500 0.00 0.00 34.39 3.16
2112 2405 9.513906 TGAATATCTGTCCAATCAAACAACTAA 57.486 29.630 0.00 0.00 0.00 2.24
2113 2406 9.513906 TTGAATATCTGTCCAATCAAACAACTA 57.486 29.630 0.00 0.00 0.00 2.24
2115 2408 9.079833 CATTGAATATCTGTCCAATCAAACAAC 57.920 33.333 0.00 0.00 31.37 3.32
2127 2439 6.259608 CAGGAACACTCCATTGAATATCTGTC 59.740 42.308 0.00 0.00 45.24 3.51
2241 2554 6.441093 ACAAGGCATGTATCATGTACAAAG 57.559 37.500 0.00 0.00 41.63 2.77
2244 2557 5.252547 ACAACAAGGCATGTATCATGTACA 58.747 37.500 0.00 0.00 42.99 2.90
2282 2616 3.548818 GCAACTTTGTGTAAGCAGGACAG 60.549 47.826 0.00 0.00 37.37 3.51
2287 2621 3.182972 GCATTGCAACTTTGTGTAAGCAG 59.817 43.478 0.00 0.00 39.69 4.24
2294 2628 5.801947 GTCTTATAGGCATTGCAACTTTGTG 59.198 40.000 11.39 0.00 0.00 3.33
2303 2637 6.456795 AGAAAAAGGTCTTATAGGCATTGC 57.543 37.500 0.00 0.00 0.00 3.56
2313 2647 9.117183 GTCAAAAGTCCTAAGAAAAAGGTCTTA 57.883 33.333 2.77 0.00 40.25 2.10
2316 2650 7.569639 AGTCAAAAGTCCTAAGAAAAAGGTC 57.430 36.000 0.00 0.00 35.48 3.85
2377 2728 7.337184 TCAGACTACTCTACTCATTAAGTGTGG 59.663 40.741 0.00 0.00 39.11 4.17
2427 2828 6.535865 GCAAATCAACTTATCAAATGCATGGA 59.464 34.615 0.00 1.17 0.00 3.41
2430 2831 7.820386 TGAAGCAAATCAACTTATCAAATGCAT 59.180 29.630 0.00 0.00 33.89 3.96
2592 2993 4.314121 ACATCAAGACTCTTGAAGCACTC 58.686 43.478 22.47 0.00 31.55 3.51
2760 3527 4.622260 ATGTTGGGCAATTTAACTGCTT 57.378 36.364 0.00 0.00 39.82 3.91
2768 3536 6.564557 AAAGATCCATATGTTGGGCAATTT 57.435 33.333 1.24 0.00 46.45 1.82
2825 3593 4.578105 GGAGATGCAAAGTAAAGATCCAGG 59.422 45.833 0.00 0.00 0.00 4.45
2826 3594 5.188434 TGGAGATGCAAAGTAAAGATCCAG 58.812 41.667 0.00 0.00 31.03 3.86
2827 3595 5.178096 TGGAGATGCAAAGTAAAGATCCA 57.822 39.130 0.00 0.00 32.10 3.41
2828 3596 6.515272 TTTGGAGATGCAAAGTAAAGATCC 57.485 37.500 0.00 0.00 0.00 3.36
2829 3597 7.982371 CATTTGGAGATGCAAAGTAAAGATC 57.018 36.000 5.74 0.00 0.00 2.75
2842 3610 2.426024 CCCAGAGTTGCATTTGGAGATG 59.574 50.000 0.00 0.00 32.34 2.90
2843 3611 2.309755 TCCCAGAGTTGCATTTGGAGAT 59.690 45.455 0.00 0.00 32.34 2.75
2844 3612 1.704628 TCCCAGAGTTGCATTTGGAGA 59.295 47.619 0.00 0.00 32.34 3.71
2845 3613 2.205022 TCCCAGAGTTGCATTTGGAG 57.795 50.000 0.00 0.00 32.34 3.86
2864 3632 8.472413 CAAGATAAACAAAATGGTCAGGATCAT 58.528 33.333 0.00 0.00 32.58 2.45
2869 3637 9.191995 GTTAACAAGATAAACAAAATGGTCAGG 57.808 33.333 0.00 0.00 0.00 3.86
2885 3653 3.655777 TCCAAGACCCTGGTTAACAAGAT 59.344 43.478 11.86 0.00 37.74 2.40
2889 3660 3.827722 CTTTCCAAGACCCTGGTTAACA 58.172 45.455 8.10 0.00 37.74 2.41
2890 3661 2.557056 GCTTTCCAAGACCCTGGTTAAC 59.443 50.000 0.00 0.00 37.74 2.01
2893 3664 0.555769 TGCTTTCCAAGACCCTGGTT 59.444 50.000 0.00 0.00 37.74 3.67
3118 7014 6.405842 CCGAATACAAGGGATCATCGATGATA 60.406 42.308 34.72 20.84 46.84 2.15
3221 7120 3.438087 AGTCAGATTCTTCCAAACATGCG 59.562 43.478 0.00 0.00 0.00 4.73
3291 7204 3.435327 AGCAACAAGAAACATATTCGCGA 59.565 39.130 3.71 3.71 0.00 5.87
3404 8199 2.622942 AGTGCAAGCCGAATCAGAAAAA 59.377 40.909 0.00 0.00 0.00 1.94
3405 8200 2.226437 GAGTGCAAGCCGAATCAGAAAA 59.774 45.455 0.00 0.00 0.00 2.29
3410 8205 1.741401 CCGAGTGCAAGCCGAATCA 60.741 57.895 5.38 0.00 0.00 2.57
3412 8207 3.127533 GCCGAGTGCAAGCCGAAT 61.128 61.111 5.38 0.00 40.77 3.34
3424 8219 2.393271 AGTCAGAATTTCCAGCCGAG 57.607 50.000 0.00 0.00 0.00 4.63
3464 8270 2.106683 CGTCGGCTCATCCAAACCC 61.107 63.158 0.00 0.00 34.01 4.11
3488 8630 5.021458 TCACTTTCCTTTCGTATAGGGTCT 58.979 41.667 0.00 0.00 33.41 3.85
3492 8634 4.755411 TGCTCACTTTCCTTTCGTATAGG 58.245 43.478 0.00 0.00 0.00 2.57
3493 8635 4.268884 GCTGCTCACTTTCCTTTCGTATAG 59.731 45.833 0.00 0.00 0.00 1.31
3494 8636 4.181578 GCTGCTCACTTTCCTTTCGTATA 58.818 43.478 0.00 0.00 0.00 1.47
3496 8638 2.224185 TGCTGCTCACTTTCCTTTCGTA 60.224 45.455 0.00 0.00 0.00 3.43
3498 8640 1.069636 GTGCTGCTCACTTTCCTTTCG 60.070 52.381 0.00 0.00 42.38 3.46
3499 8641 1.949525 TGTGCTGCTCACTTTCCTTTC 59.050 47.619 0.00 0.00 45.81 2.62
3500 8642 2.057137 TGTGCTGCTCACTTTCCTTT 57.943 45.000 0.00 0.00 45.81 3.11
3501 8643 2.283145 ATGTGCTGCTCACTTTCCTT 57.717 45.000 6.54 0.00 45.81 3.36
3503 8645 2.626088 GAATGTGCTGCTCACTTTCC 57.374 50.000 18.51 8.28 46.12 3.13
3506 8648 0.111061 TGGGAATGTGCTGCTCACTT 59.889 50.000 6.54 3.28 45.81 3.16
3507 8649 0.607489 GTGGGAATGTGCTGCTCACT 60.607 55.000 6.54 0.00 45.81 3.41
3509 8651 0.321919 GAGTGGGAATGTGCTGCTCA 60.322 55.000 6.88 6.88 0.00 4.26
3543 8687 5.891551 ACAGATGTTTGGTTGTTTTAGTCCT 59.108 36.000 0.00 0.00 0.00 3.85
3587 8731 1.094785 ACATTCAGCGTATGGTTGGC 58.905 50.000 0.00 0.00 0.00 4.52
3621 8766 4.154737 CGGCAGAACTTCATCAATTTCTCA 59.845 41.667 0.00 0.00 30.95 3.27
3700 8866 9.747898 TTTCATGTCAAAAACTATACACCCTAT 57.252 29.630 0.00 0.00 0.00 2.57
3701 8867 9.575868 TTTTCATGTCAAAAACTATACACCCTA 57.424 29.630 0.00 0.00 0.00 3.53
3702 8868 8.472007 TTTTCATGTCAAAAACTATACACCCT 57.528 30.769 0.00 0.00 0.00 4.34
3703 8869 9.705290 AATTTTCATGTCAAAAACTATACACCC 57.295 29.630 0.00 0.00 0.00 4.61
3715 8881 9.322773 TGTGCATTCTTTAATTTTCATGTCAAA 57.677 25.926 0.00 0.00 0.00 2.69
3716 8882 8.883954 TGTGCATTCTTTAATTTTCATGTCAA 57.116 26.923 0.00 0.00 0.00 3.18
3717 8883 8.927721 CATGTGCATTCTTTAATTTTCATGTCA 58.072 29.630 0.00 0.00 0.00 3.58
3718 8884 8.385111 CCATGTGCATTCTTTAATTTTCATGTC 58.615 33.333 0.00 0.00 30.26 3.06
3719 8885 8.095792 TCCATGTGCATTCTTTAATTTTCATGT 58.904 29.630 0.00 0.00 30.26 3.21
3720 8886 8.481974 TCCATGTGCATTCTTTAATTTTCATG 57.518 30.769 0.00 0.00 0.00 3.07
3721 8887 7.767198 CCTCCATGTGCATTCTTTAATTTTCAT 59.233 33.333 0.00 0.00 0.00 2.57
3722 8888 7.039152 TCCTCCATGTGCATTCTTTAATTTTCA 60.039 33.333 0.00 0.00 0.00 2.69
3723 8889 7.322664 TCCTCCATGTGCATTCTTTAATTTTC 58.677 34.615 0.00 0.00 0.00 2.29
3724 8890 7.243604 TCCTCCATGTGCATTCTTTAATTTT 57.756 32.000 0.00 0.00 0.00 1.82
3725 8891 6.855763 TCCTCCATGTGCATTCTTTAATTT 57.144 33.333 0.00 0.00 0.00 1.82
3726 8892 6.855763 TTCCTCCATGTGCATTCTTTAATT 57.144 33.333 0.00 0.00 0.00 1.40
3727 8893 6.855763 TTTCCTCCATGTGCATTCTTTAAT 57.144 33.333 0.00 0.00 0.00 1.40
3728 8894 6.662865 TTTTCCTCCATGTGCATTCTTTAA 57.337 33.333 0.00 0.00 0.00 1.52
3729 8895 6.662865 TTTTTCCTCCATGTGCATTCTTTA 57.337 33.333 0.00 0.00 0.00 1.85
3730 8896 5.549742 TTTTTCCTCCATGTGCATTCTTT 57.450 34.783 0.00 0.00 0.00 2.52
3731 8897 5.750352 ATTTTTCCTCCATGTGCATTCTT 57.250 34.783 0.00 0.00 0.00 2.52
3732 8898 5.750352 AATTTTTCCTCCATGTGCATTCT 57.250 34.783 0.00 0.00 0.00 2.40
3733 8899 5.933463 TGAAATTTTTCCTCCATGTGCATTC 59.067 36.000 0.00 0.00 36.36 2.67
3734 8900 5.702209 GTGAAATTTTTCCTCCATGTGCATT 59.298 36.000 0.00 0.00 36.36 3.56
3735 8901 5.240121 GTGAAATTTTTCCTCCATGTGCAT 58.760 37.500 0.00 0.00 36.36 3.96
3736 8902 4.630111 GTGAAATTTTTCCTCCATGTGCA 58.370 39.130 0.00 0.00 36.36 4.57
3737 8903 3.674753 CGTGAAATTTTTCCTCCATGTGC 59.325 43.478 0.00 0.00 36.36 4.57
3738 8904 5.119931 TCGTGAAATTTTTCCTCCATGTG 57.880 39.130 0.00 0.00 36.36 3.21
3739 8905 4.827284 ACTCGTGAAATTTTTCCTCCATGT 59.173 37.500 0.00 0.00 36.36 3.21
3740 8906 5.376854 ACTCGTGAAATTTTTCCTCCATG 57.623 39.130 0.00 0.00 36.36 3.66
3741 8907 6.405278 AAACTCGTGAAATTTTTCCTCCAT 57.595 33.333 0.00 0.00 36.36 3.41
3742 8908 5.845391 AAACTCGTGAAATTTTTCCTCCA 57.155 34.783 0.00 0.00 36.36 3.86
3743 8909 5.462068 CCAAAACTCGTGAAATTTTTCCTCC 59.538 40.000 0.00 0.00 36.36 4.30
3744 8910 5.462068 CCCAAAACTCGTGAAATTTTTCCTC 59.538 40.000 0.00 0.00 36.36 3.71
3745 8911 5.356426 CCCAAAACTCGTGAAATTTTTCCT 58.644 37.500 0.00 0.00 36.36 3.36
3746 8912 4.025229 GCCCAAAACTCGTGAAATTTTTCC 60.025 41.667 0.00 0.00 36.36 3.13
3747 8913 4.568760 TGCCCAAAACTCGTGAAATTTTTC 59.431 37.500 0.00 0.00 37.69 2.29
3748 8914 4.508662 TGCCCAAAACTCGTGAAATTTTT 58.491 34.783 0.00 0.00 0.00 1.94
3749 8915 4.130286 TGCCCAAAACTCGTGAAATTTT 57.870 36.364 0.00 0.00 0.00 1.82
3750 8916 3.810310 TGCCCAAAACTCGTGAAATTT 57.190 38.095 0.00 0.00 0.00 1.82
3751 8917 3.383185 TCTTGCCCAAAACTCGTGAAATT 59.617 39.130 0.00 0.00 0.00 1.82
3752 8918 2.955660 TCTTGCCCAAAACTCGTGAAAT 59.044 40.909 0.00 0.00 0.00 2.17
3753 8919 2.370349 TCTTGCCCAAAACTCGTGAAA 58.630 42.857 0.00 0.00 0.00 2.69
3754 8920 2.045561 TCTTGCCCAAAACTCGTGAA 57.954 45.000 0.00 0.00 0.00 3.18
3755 8921 2.270352 ATCTTGCCCAAAACTCGTGA 57.730 45.000 0.00 0.00 0.00 4.35
3756 8922 4.701956 ATAATCTTGCCCAAAACTCGTG 57.298 40.909 0.00 0.00 0.00 4.35
3757 8923 4.638865 GGTATAATCTTGCCCAAAACTCGT 59.361 41.667 0.00 0.00 0.00 4.18
3758 8924 4.260620 CGGTATAATCTTGCCCAAAACTCG 60.261 45.833 0.00 0.00 0.00 4.18
3759 8925 4.879545 TCGGTATAATCTTGCCCAAAACTC 59.120 41.667 0.00 0.00 0.00 3.01
3760 8926 4.850680 TCGGTATAATCTTGCCCAAAACT 58.149 39.130 0.00 0.00 0.00 2.66
3761 8927 5.124936 AGTTCGGTATAATCTTGCCCAAAAC 59.875 40.000 0.00 0.00 0.00 2.43
3762 8928 5.258051 AGTTCGGTATAATCTTGCCCAAAA 58.742 37.500 0.00 0.00 0.00 2.44
3763 8929 4.850680 AGTTCGGTATAATCTTGCCCAAA 58.149 39.130 0.00 0.00 0.00 3.28
3764 8930 4.497291 AGTTCGGTATAATCTTGCCCAA 57.503 40.909 0.00 0.00 0.00 4.12
3765 8931 5.617528 TTAGTTCGGTATAATCTTGCCCA 57.382 39.130 0.00 0.00 0.00 5.36
3766 8932 6.708949 TCAATTAGTTCGGTATAATCTTGCCC 59.291 38.462 0.00 0.00 0.00 5.36
3767 8933 7.225931 TGTCAATTAGTTCGGTATAATCTTGCC 59.774 37.037 0.00 0.00 0.00 4.52
3768 8934 8.138365 TGTCAATTAGTTCGGTATAATCTTGC 57.862 34.615 0.00 0.00 0.00 4.01
3786 8952 9.692325 AAGCTCCTCTATTTTCTAATGTCAATT 57.308 29.630 0.00 0.00 0.00 2.32
3787 8953 9.118300 CAAGCTCCTCTATTTTCTAATGTCAAT 57.882 33.333 0.00 0.00 0.00 2.57
3788 8954 7.066284 GCAAGCTCCTCTATTTTCTAATGTCAA 59.934 37.037 0.00 0.00 0.00 3.18
3789 8955 6.540189 GCAAGCTCCTCTATTTTCTAATGTCA 59.460 38.462 0.00 0.00 0.00 3.58
3790 8956 6.017523 GGCAAGCTCCTCTATTTTCTAATGTC 60.018 42.308 0.00 0.00 0.00 3.06
3791 8957 5.825151 GGCAAGCTCCTCTATTTTCTAATGT 59.175 40.000 0.00 0.00 0.00 2.71
3792 8958 6.060788 AGGCAAGCTCCTCTATTTTCTAATG 58.939 40.000 0.00 0.00 0.00 1.90
3793 8959 6.259346 AGGCAAGCTCCTCTATTTTCTAAT 57.741 37.500 0.00 0.00 0.00 1.73
3794 8960 5.700402 AGGCAAGCTCCTCTATTTTCTAA 57.300 39.130 0.00 0.00 0.00 2.10
3795 8961 6.808321 TTAGGCAAGCTCCTCTATTTTCTA 57.192 37.500 0.00 0.00 37.66 2.10
3796 8962 5.700402 TTAGGCAAGCTCCTCTATTTTCT 57.300 39.130 0.00 0.00 37.66 2.52
3797 8963 9.377312 CTATATTAGGCAAGCTCCTCTATTTTC 57.623 37.037 0.00 0.00 37.66 2.29
3798 8964 9.105844 TCTATATTAGGCAAGCTCCTCTATTTT 57.894 33.333 0.00 0.00 37.66 1.82
3799 8965 8.671987 TCTATATTAGGCAAGCTCCTCTATTT 57.328 34.615 0.00 0.00 37.66 1.40
3800 8966 8.119246 TCTCTATATTAGGCAAGCTCCTCTATT 58.881 37.037 0.00 0.00 37.66 1.73
3801 8967 7.647827 TCTCTATATTAGGCAAGCTCCTCTAT 58.352 38.462 0.00 0.59 37.66 1.98
3802 8968 7.033782 TCTCTATATTAGGCAAGCTCCTCTA 57.966 40.000 0.00 0.00 37.66 2.43
3803 8969 5.898120 TCTCTATATTAGGCAAGCTCCTCT 58.102 41.667 0.00 0.00 37.66 3.69
3804 8970 6.597832 TTCTCTATATTAGGCAAGCTCCTC 57.402 41.667 0.00 0.00 37.66 3.71
3805 8971 7.017056 ACATTTCTCTATATTAGGCAAGCTCCT 59.983 37.037 0.00 0.00 40.21 3.69
3806 8972 7.164803 ACATTTCTCTATATTAGGCAAGCTCC 58.835 38.462 0.00 0.00 0.00 4.70
3807 8973 9.712305 TTACATTTCTCTATATTAGGCAAGCTC 57.288 33.333 0.00 0.00 0.00 4.09
3846 9012 6.399639 ACACCACTCGTTTGGATAATTTTT 57.600 33.333 11.38 0.00 39.24 1.94
3847 9013 7.013464 TGTTACACCACTCGTTTGGATAATTTT 59.987 33.333 11.38 0.00 39.24 1.82
3848 9014 6.487331 TGTTACACCACTCGTTTGGATAATTT 59.513 34.615 11.38 0.00 39.24 1.82
3849 9015 5.998981 TGTTACACCACTCGTTTGGATAATT 59.001 36.000 11.38 0.00 39.24 1.40
3850 9016 5.553123 TGTTACACCACTCGTTTGGATAAT 58.447 37.500 11.38 0.00 39.24 1.28
3851 9017 4.958509 TGTTACACCACTCGTTTGGATAA 58.041 39.130 11.38 7.07 39.24 1.75
3852 9018 4.603989 TGTTACACCACTCGTTTGGATA 57.396 40.909 11.38 2.14 39.24 2.59
3853 9019 3.478857 TGTTACACCACTCGTTTGGAT 57.521 42.857 11.38 2.94 39.24 3.41
3854 9020 2.983907 TGTTACACCACTCGTTTGGA 57.016 45.000 11.38 0.00 39.24 3.53
3855 9021 5.873179 ATTATGTTACACCACTCGTTTGG 57.127 39.130 3.82 3.82 43.04 3.28
3856 9022 7.231607 GTGTATTATGTTACACCACTCGTTTG 58.768 38.462 8.19 0.00 43.97 2.93
3857 9023 7.355332 GTGTATTATGTTACACCACTCGTTT 57.645 36.000 8.19 0.00 43.97 3.60
3858 9024 6.956299 GTGTATTATGTTACACCACTCGTT 57.044 37.500 8.19 0.00 43.97 3.85
3907 9073 9.420118 TGTTCCTTGATACAAGGCATATAAATT 57.580 29.630 21.32 0.00 37.34 1.82
3908 9074 8.995027 TGTTCCTTGATACAAGGCATATAAAT 57.005 30.769 21.32 0.00 37.34 1.40
3909 9075 8.271458 TCTGTTCCTTGATACAAGGCATATAAA 58.729 33.333 21.32 9.79 37.34 1.40
3910 9076 7.801104 TCTGTTCCTTGATACAAGGCATATAA 58.199 34.615 21.32 10.37 37.34 0.98
3911 9077 7.373617 TCTGTTCCTTGATACAAGGCATATA 57.626 36.000 21.32 5.47 37.34 0.86
3912 9078 6.252599 TCTGTTCCTTGATACAAGGCATAT 57.747 37.500 21.32 0.00 37.34 1.78
3913 9079 5.396772 CCTCTGTTCCTTGATACAAGGCATA 60.397 44.000 21.32 11.23 37.34 3.14
3914 9080 4.521146 CTCTGTTCCTTGATACAAGGCAT 58.479 43.478 21.32 0.00 37.34 4.40
3915 9081 3.307691 CCTCTGTTCCTTGATACAAGGCA 60.308 47.826 21.32 14.84 37.34 4.75
3916 9082 3.274288 CCTCTGTTCCTTGATACAAGGC 58.726 50.000 21.32 11.71 37.34 4.35
3917 9083 3.519510 TCCCTCTGTTCCTTGATACAAGG 59.480 47.826 20.43 20.43 38.78 3.61
3918 9084 4.223923 ACTCCCTCTGTTCCTTGATACAAG 59.776 45.833 4.73 4.73 0.00 3.16
3919 9085 4.168101 ACTCCCTCTGTTCCTTGATACAA 58.832 43.478 0.00 0.00 0.00 2.41
3920 9086 3.791320 ACTCCCTCTGTTCCTTGATACA 58.209 45.455 0.00 0.00 0.00 2.29
3921 9087 6.487299 AATACTCCCTCTGTTCCTTGATAC 57.513 41.667 0.00 0.00 0.00 2.24
3922 9088 9.310449 GTATAATACTCCCTCTGTTCCTTGATA 57.690 37.037 0.00 0.00 0.00 2.15
3923 9089 7.789831 TGTATAATACTCCCTCTGTTCCTTGAT 59.210 37.037 0.00 0.00 0.00 2.57
3924 9090 7.130099 TGTATAATACTCCCTCTGTTCCTTGA 58.870 38.462 0.00 0.00 0.00 3.02
3925 9091 7.361457 TGTATAATACTCCCTCTGTTCCTTG 57.639 40.000 0.00 0.00 0.00 3.61
3926 9092 7.789831 TGATGTATAATACTCCCTCTGTTCCTT 59.210 37.037 0.00 0.00 0.00 3.36
3927 9093 7.306013 TGATGTATAATACTCCCTCTGTTCCT 58.694 38.462 0.00 0.00 0.00 3.36
3928 9094 7.540474 TGATGTATAATACTCCCTCTGTTCC 57.460 40.000 0.00 0.00 0.00 3.62
3929 9095 7.971168 CGATGATGTATAATACTCCCTCTGTTC 59.029 40.741 0.00 0.00 0.00 3.18
3930 9096 7.670140 TCGATGATGTATAATACTCCCTCTGTT 59.330 37.037 0.00 0.00 0.00 3.16
3931 9097 7.175797 TCGATGATGTATAATACTCCCTCTGT 58.824 38.462 0.00 0.00 0.00 3.41
3932 9098 7.338196 ACTCGATGATGTATAATACTCCCTCTG 59.662 40.741 0.00 0.00 0.00 3.35
3933 9099 7.338196 CACTCGATGATGTATAATACTCCCTCT 59.662 40.741 0.00 0.00 0.00 3.69
3934 9100 7.415765 CCACTCGATGATGTATAATACTCCCTC 60.416 44.444 0.00 0.00 0.00 4.30
3935 9101 6.378564 CCACTCGATGATGTATAATACTCCCT 59.621 42.308 0.00 0.00 0.00 4.20
3936 9102 6.153000 ACCACTCGATGATGTATAATACTCCC 59.847 42.308 0.00 0.00 0.00 4.30
3937 9103 7.159322 ACCACTCGATGATGTATAATACTCC 57.841 40.000 0.00 0.00 0.00 3.85
3938 9104 6.962116 CGACCACTCGATGATGTATAATACTC 59.038 42.308 0.00 0.00 43.06 2.59
3939 9105 6.653740 TCGACCACTCGATGATGTATAATACT 59.346 38.462 0.00 0.00 44.14 2.12
3940 9106 6.839033 TCGACCACTCGATGATGTATAATAC 58.161 40.000 0.00 0.00 44.14 1.89
3997 9384 1.971149 TGAGTGGGGATGAGAACCAT 58.029 50.000 0.00 0.00 36.54 3.55
3998 9385 1.630369 CTTGAGTGGGGATGAGAACCA 59.370 52.381 0.00 0.00 0.00 3.67
4001 9388 1.909302 GGACTTGAGTGGGGATGAGAA 59.091 52.381 0.00 0.00 0.00 2.87
4003 9390 1.484240 GAGGACTTGAGTGGGGATGAG 59.516 57.143 0.00 0.00 0.00 2.90
4004 9391 1.079490 AGAGGACTTGAGTGGGGATGA 59.921 52.381 0.00 0.00 0.00 2.92
4005 9392 1.577736 AGAGGACTTGAGTGGGGATG 58.422 55.000 0.00 0.00 0.00 3.51
4006 9393 2.350863 AAGAGGACTTGAGTGGGGAT 57.649 50.000 0.00 0.00 34.80 3.85
4008 9395 3.173965 TCTTAAGAGGACTTGAGTGGGG 58.826 50.000 0.00 0.00 39.63 4.96
4009 9396 4.891992 TTCTTAAGAGGACTTGAGTGGG 57.108 45.455 5.12 0.00 39.63 4.61
4010 9397 5.645497 CCATTTCTTAAGAGGACTTGAGTGG 59.355 44.000 5.12 2.13 39.63 4.00
4011 9398 5.123027 GCCATTTCTTAAGAGGACTTGAGTG 59.877 44.000 12.30 1.12 39.63 3.51
4012 9399 5.013599 AGCCATTTCTTAAGAGGACTTGAGT 59.986 40.000 12.30 0.00 39.63 3.41
4015 9402 4.331168 CGAGCCATTTCTTAAGAGGACTTG 59.669 45.833 12.30 8.93 37.53 3.16
4016 9403 4.020128 ACGAGCCATTTCTTAAGAGGACTT 60.020 41.667 12.30 0.00 39.81 3.01
4017 9404 3.515901 ACGAGCCATTTCTTAAGAGGACT 59.484 43.478 12.30 8.87 0.00 3.85
4018 9405 3.863041 ACGAGCCATTTCTTAAGAGGAC 58.137 45.455 12.30 5.02 0.00 3.85
4019 9406 3.118738 GGACGAGCCATTTCTTAAGAGGA 60.119 47.826 12.30 3.70 36.34 3.71
4020 9407 3.118592 AGGACGAGCCATTTCTTAAGAGG 60.119 47.826 5.12 5.13 40.02 3.69
4021 9408 4.116238 GAGGACGAGCCATTTCTTAAGAG 58.884 47.826 5.12 0.00 40.02 2.85
4022 9409 3.513912 TGAGGACGAGCCATTTCTTAAGA 59.486 43.478 0.00 0.00 40.02 2.10
4023 9410 3.861840 TGAGGACGAGCCATTTCTTAAG 58.138 45.455 0.00 0.00 40.02 1.85
4024 9411 3.260884 ACTGAGGACGAGCCATTTCTTAA 59.739 43.478 0.00 0.00 40.02 1.85
4025 9412 2.832129 ACTGAGGACGAGCCATTTCTTA 59.168 45.455 0.00 0.00 40.02 2.10
4026 9413 1.625818 ACTGAGGACGAGCCATTTCTT 59.374 47.619 0.00 0.00 40.02 2.52
4027 9414 1.270907 ACTGAGGACGAGCCATTTCT 58.729 50.000 0.00 0.00 40.02 2.52
4028 9415 2.961526 TACTGAGGACGAGCCATTTC 57.038 50.000 0.00 0.00 40.02 2.17
4029 9416 3.914426 AATACTGAGGACGAGCCATTT 57.086 42.857 0.00 0.00 40.02 2.32
4030 9417 4.215908 TCTAATACTGAGGACGAGCCATT 58.784 43.478 0.00 0.00 40.02 3.16
4031 9418 3.823873 CTCTAATACTGAGGACGAGCCAT 59.176 47.826 0.00 0.00 40.02 4.40
4032 9419 3.215151 CTCTAATACTGAGGACGAGCCA 58.785 50.000 0.00 0.00 40.02 4.75
4033 9420 2.030628 GCTCTAATACTGAGGACGAGCC 60.031 54.545 0.00 0.00 37.14 4.70
4034 9421 2.619177 TGCTCTAATACTGAGGACGAGC 59.381 50.000 5.73 5.73 41.88 5.03
4035 9422 4.336993 AGTTGCTCTAATACTGAGGACGAG 59.663 45.833 0.00 0.00 31.80 4.18
4036 9423 4.270834 AGTTGCTCTAATACTGAGGACGA 58.729 43.478 0.00 0.00 31.80 4.20
4037 9424 4.640789 AGTTGCTCTAATACTGAGGACG 57.359 45.455 0.00 0.00 31.80 4.79
4038 9425 6.016610 CCTCTAGTTGCTCTAATACTGAGGAC 60.017 46.154 0.00 0.00 38.30 3.85
4039 9426 6.065374 CCTCTAGTTGCTCTAATACTGAGGA 58.935 44.000 0.00 0.00 38.30 3.71
4040 9427 5.278758 GCCTCTAGTTGCTCTAATACTGAGG 60.279 48.000 0.00 0.00 38.63 3.86
4041 9428 5.300539 TGCCTCTAGTTGCTCTAATACTGAG 59.699 44.000 7.55 0.00 34.87 3.35
4042 9429 5.201243 TGCCTCTAGTTGCTCTAATACTGA 58.799 41.667 7.55 0.00 0.00 3.41
4043 9430 5.521906 TGCCTCTAGTTGCTCTAATACTG 57.478 43.478 7.55 0.00 0.00 2.74
4053 9440 0.938008 GCCGTATTGCCTCTAGTTGC 59.062 55.000 0.00 0.00 0.00 4.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.