Multiple sequence alignment - TraesCS5D01G462400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G462400 chr5D 100.000 5130 0 0 1 5130 506100112 506094983 0.000000e+00 9474.0
1 TraesCS5D01G462400 chr5D 92.517 294 21 1 1167 1460 450420925 450420633 2.210000e-113 420.0
2 TraesCS5D01G462400 chr5D 92.414 290 22 0 1171 1460 75600901 75600612 1.030000e-111 414.0
3 TraesCS5D01G462400 chr5D 94.737 114 4 1 1 114 479119980 479120091 5.280000e-40 176.0
4 TraesCS5D01G462400 chr5D 94.690 113 4 1 1 113 506105671 506105561 1.900000e-39 174.0
5 TraesCS5D01G462400 chr5D 81.013 158 26 4 1596 1751 44708070 44707915 6.980000e-24 122.0
6 TraesCS5D01G462400 chr5A 94.955 3469 107 29 740 4177 633866650 633863219 0.000000e+00 5374.0
7 TraesCS5D01G462400 chr5A 90.572 944 67 7 4186 5126 633863150 633862226 0.000000e+00 1230.0
8 TraesCS5D01G462400 chr5A 84.359 390 19 15 354 713 633867027 633866650 1.370000e-90 344.0
9 TraesCS5D01G462400 chr5A 91.892 74 6 0 1555 1628 1090534 1090461 2.530000e-18 104.0
10 TraesCS5D01G462400 chr5B 96.385 3015 91 6 1172 4177 636656259 636653254 0.000000e+00 4948.0
11 TraesCS5D01G462400 chr5B 87.565 965 78 19 4186 5130 636653187 636652245 0.000000e+00 1079.0
12 TraesCS5D01G462400 chr5B 88.383 439 19 17 284 709 636657304 636656885 2.760000e-137 499.0
13 TraesCS5D01G462400 chr5B 93.333 75 3 2 740 814 636656887 636656815 5.430000e-20 110.0
14 TraesCS5D01G462400 chr7B 92.163 319 23 2 1174 1492 683094676 683094360 2.820000e-122 449.0
15 TraesCS5D01G462400 chr7B 97.619 42 1 0 1552 1593 456307411 456307452 7.130000e-09 73.1
16 TraesCS5D01G462400 chr2D 92.857 294 20 1 1167 1460 619986407 619986115 4.750000e-115 425.0
17 TraesCS5D01G462400 chr1D 92.226 283 21 1 1178 1460 2546386 2546105 2.880000e-107 399.0
18 TraesCS5D01G462400 chr1D 93.860 114 5 1 1 114 410662278 410662389 2.460000e-38 171.0
19 TraesCS5D01G462400 chr2A 91.349 289 25 0 1172 1460 689580839 689581127 3.720000e-106 396.0
20 TraesCS5D01G462400 chr4A 90.816 294 26 1 1167 1460 254221932 254222224 4.820000e-105 392.0
21 TraesCS5D01G462400 chr4A 94.667 75 3 1 1555 1628 469886093 469886019 1.170000e-21 115.0
22 TraesCS5D01G462400 chrUn 94.690 113 4 1 1 113 99721483 99721373 1.900000e-39 174.0
23 TraesCS5D01G462400 chrUn 94.690 113 4 1 1 113 99735969 99735859 1.900000e-39 174.0
24 TraesCS5D01G462400 chrUn 94.690 113 4 1 1 113 477555437 477555547 1.900000e-39 174.0
25 TraesCS5D01G462400 chrUn 93.805 113 5 1 1 113 99715881 99715771 8.830000e-38 169.0
26 TraesCS5D01G462400 chr7D 93.860 114 5 1 1 114 29754514 29754625 2.460000e-38 171.0
27 TraesCS5D01G462400 chr7D 93.860 114 5 1 1 114 139853427 139853316 2.460000e-38 171.0
28 TraesCS5D01G462400 chr2B 96.104 77 3 0 1552 1628 127018320 127018396 5.390000e-25 126.0
29 TraesCS5D01G462400 chr6D 94.805 77 4 0 1552 1628 434975287 434975363 2.510000e-23 121.0
30 TraesCS5D01G462400 chr4B 95.946 74 3 0 1555 1628 626711548 626711475 2.510000e-23 121.0
31 TraesCS5D01G462400 chr6A 93.651 63 4 0 1555 1617 92163905 92163843 1.520000e-15 95.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G462400 chr5D 506094983 506100112 5129 True 9474 9474 100.0000 1 5130 1 chr5D.!!$R4 5129
1 TraesCS5D01G462400 chr5A 633862226 633867027 4801 True 2316 5374 89.9620 354 5126 3 chr5A.!!$R2 4772
2 TraesCS5D01G462400 chr5B 636652245 636657304 5059 True 1659 4948 91.4165 284 5130 4 chr5B.!!$R1 4846

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
268 269 0.035056 CCTTGCAACAGAGGGTAGGG 60.035 60.000 0.0 0.0 0.00 3.53 F
342 343 0.110486 GTCCAACCCCAAGAGCAAGA 59.890 55.000 0.0 0.0 0.00 3.02 F
993 1058 0.181350 CCAGCTAGGGTTAGGGCTTG 59.819 60.000 0.0 0.0 32.30 4.01 F
1994 2240 0.031721 GTCCAACGAGTCCAAGACGT 59.968 55.000 0.0 0.0 41.97 4.34 F
2023 2269 0.394216 TGAATCACCTCATTGGCCGG 60.394 55.000 0.0 0.0 40.22 6.13 F
2862 3109 1.150135 ACCCTTTCTCTCTCAGGTCCA 59.850 52.381 0.0 0.0 0.00 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1605 1847 0.381089 GCAGCTCCATCATGAACTGC 59.619 55.000 16.81 16.81 43.09 4.40 R
1710 1952 1.872952 CAGGTGTTTTGCTCGATGACA 59.127 47.619 0.00 0.00 0.00 3.58 R
2345 2591 1.723870 CGGTGCAAAGCTAGGATGC 59.276 57.895 0.00 6.73 40.45 3.91 R
2862 3109 2.533266 ATATTTCGCAGAGACGGCAT 57.467 45.000 0.00 0.00 38.43 4.40 R
3231 3478 2.565834 TGTCCTACTGGCAGGAACTAAC 59.434 50.000 20.34 9.40 46.31 2.34 R
4190 4445 0.174845 CGGCCCGTGTCATCTCTAAA 59.825 55.000 0.00 0.00 0.00 1.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.757850 ACCTTCTCTTTGTCAAATCACAC 57.242 39.130 0.00 0.00 0.00 3.82
23 24 4.273480 ACCTTCTCTTTGTCAAATCACACG 59.727 41.667 0.00 0.00 0.00 4.49
24 25 4.319766 CCTTCTCTTTGTCAAATCACACGG 60.320 45.833 0.00 0.00 0.00 4.94
25 26 2.548057 TCTCTTTGTCAAATCACACGGC 59.452 45.455 0.00 0.00 0.00 5.68
26 27 2.549754 CTCTTTGTCAAATCACACGGCT 59.450 45.455 0.00 0.00 0.00 5.52
27 28 2.948979 TCTTTGTCAAATCACACGGCTT 59.051 40.909 0.00 0.00 0.00 4.35
28 29 2.772568 TTGTCAAATCACACGGCTTG 57.227 45.000 0.00 0.00 0.00 4.01
29 30 1.674359 TGTCAAATCACACGGCTTGT 58.326 45.000 0.00 0.00 39.97 3.16
30 31 2.020720 TGTCAAATCACACGGCTTGTT 58.979 42.857 0.00 0.00 35.67 2.83
31 32 2.425312 TGTCAAATCACACGGCTTGTTT 59.575 40.909 0.00 0.00 35.67 2.83
32 33 3.119316 TGTCAAATCACACGGCTTGTTTT 60.119 39.130 0.00 0.00 35.67 2.43
33 34 4.096532 TGTCAAATCACACGGCTTGTTTTA 59.903 37.500 0.00 0.00 35.67 1.52
34 35 5.219633 GTCAAATCACACGGCTTGTTTTAT 58.780 37.500 0.00 0.00 35.67 1.40
35 36 5.342259 GTCAAATCACACGGCTTGTTTTATC 59.658 40.000 0.00 0.00 35.67 1.75
36 37 5.009110 TCAAATCACACGGCTTGTTTTATCA 59.991 36.000 0.00 0.00 35.67 2.15
37 38 3.889196 TCACACGGCTTGTTTTATCAC 57.111 42.857 0.00 0.00 35.67 3.06
38 39 3.472652 TCACACGGCTTGTTTTATCACT 58.527 40.909 0.00 0.00 35.67 3.41
39 40 4.633175 TCACACGGCTTGTTTTATCACTA 58.367 39.130 0.00 0.00 35.67 2.74
40 41 4.449743 TCACACGGCTTGTTTTATCACTAC 59.550 41.667 0.00 0.00 35.67 2.73
41 42 4.451096 CACACGGCTTGTTTTATCACTACT 59.549 41.667 0.00 0.00 35.67 2.57
42 43 5.636121 CACACGGCTTGTTTTATCACTACTA 59.364 40.000 0.00 0.00 35.67 1.82
43 44 6.312918 CACACGGCTTGTTTTATCACTACTAT 59.687 38.462 0.00 0.00 35.67 2.12
44 45 6.877322 ACACGGCTTGTTTTATCACTACTATT 59.123 34.615 0.00 0.00 33.09 1.73
45 46 7.064253 ACACGGCTTGTTTTATCACTACTATTC 59.936 37.037 0.00 0.00 33.09 1.75
46 47 7.277981 CACGGCTTGTTTTATCACTACTATTCT 59.722 37.037 0.00 0.00 0.00 2.40
47 48 7.277981 ACGGCTTGTTTTATCACTACTATTCTG 59.722 37.037 0.00 0.00 0.00 3.02
48 49 7.491372 CGGCTTGTTTTATCACTACTATTCTGA 59.509 37.037 0.00 0.00 0.00 3.27
49 50 9.331282 GGCTTGTTTTATCACTACTATTCTGAT 57.669 33.333 0.00 0.00 0.00 2.90
60 61 9.920133 TCACTACTATTCTGATCATGCTTTATC 57.080 33.333 0.00 0.00 0.00 1.75
61 62 9.926158 CACTACTATTCTGATCATGCTTTATCT 57.074 33.333 0.00 0.00 0.00 1.98
108 109 9.822185 ATCTTTTGGTAAATTGCTCATATTTCC 57.178 29.630 0.00 0.00 0.00 3.13
109 110 8.811017 TCTTTTGGTAAATTGCTCATATTTCCA 58.189 29.630 0.00 0.00 0.00 3.53
110 111 9.434420 CTTTTGGTAAATTGCTCATATTTCCAA 57.566 29.630 0.00 0.00 34.34 3.53
111 112 8.770438 TTTGGTAAATTGCTCATATTTCCAAC 57.230 30.769 0.00 0.00 35.01 3.77
112 113 7.473735 TGGTAAATTGCTCATATTTCCAACA 57.526 32.000 0.00 0.00 0.00 3.33
113 114 7.546358 TGGTAAATTGCTCATATTTCCAACAG 58.454 34.615 0.00 0.00 0.00 3.16
114 115 6.980397 GGTAAATTGCTCATATTTCCAACAGG 59.020 38.462 0.00 0.00 0.00 4.00
115 116 6.855763 AAATTGCTCATATTTCCAACAGGA 57.144 33.333 0.00 0.00 0.00 3.86
116 117 5.841957 ATTGCTCATATTTCCAACAGGAC 57.158 39.130 0.00 0.00 0.00 3.85
117 118 4.299586 TGCTCATATTTCCAACAGGACA 57.700 40.909 0.00 0.00 0.00 4.02
118 119 4.009675 TGCTCATATTTCCAACAGGACAC 58.990 43.478 0.00 0.00 0.00 3.67
119 120 3.063997 GCTCATATTTCCAACAGGACACG 59.936 47.826 0.00 0.00 0.00 4.49
120 121 4.503910 CTCATATTTCCAACAGGACACGA 58.496 43.478 0.00 0.00 0.00 4.35
121 122 4.250464 TCATATTTCCAACAGGACACGAC 58.750 43.478 0.00 0.00 0.00 4.34
122 123 2.631160 ATTTCCAACAGGACACGACA 57.369 45.000 0.00 0.00 0.00 4.35
123 124 1.658994 TTTCCAACAGGACACGACAC 58.341 50.000 0.00 0.00 0.00 3.67
124 125 0.179067 TTCCAACAGGACACGACACC 60.179 55.000 0.00 0.00 0.00 4.16
125 126 1.954146 CCAACAGGACACGACACCG 60.954 63.158 0.00 0.00 42.50 4.94
126 127 1.066752 CAACAGGACACGACACCGA 59.933 57.895 0.00 0.00 39.50 4.69
127 128 0.528901 CAACAGGACACGACACCGAA 60.529 55.000 0.00 0.00 39.50 4.30
128 129 0.249322 AACAGGACACGACACCGAAG 60.249 55.000 0.00 0.00 39.50 3.79
129 130 2.022129 CAGGACACGACACCGAAGC 61.022 63.158 0.00 0.00 39.50 3.86
130 131 3.103911 GGACACGACACCGAAGCG 61.104 66.667 0.00 0.00 39.50 4.68
131 132 3.764049 GACACGACACCGAAGCGC 61.764 66.667 0.00 0.00 39.50 5.92
148 149 3.861797 CCGCCACCGCCCTAATCT 61.862 66.667 0.00 0.00 0.00 2.40
149 150 2.189521 CGCCACCGCCCTAATCTT 59.810 61.111 0.00 0.00 0.00 2.40
150 151 1.887707 CGCCACCGCCCTAATCTTC 60.888 63.158 0.00 0.00 0.00 2.87
151 152 1.526225 GCCACCGCCCTAATCTTCC 60.526 63.158 0.00 0.00 0.00 3.46
152 153 1.912220 CCACCGCCCTAATCTTCCA 59.088 57.895 0.00 0.00 0.00 3.53
153 154 0.463833 CCACCGCCCTAATCTTCCAC 60.464 60.000 0.00 0.00 0.00 4.02
154 155 0.541863 CACCGCCCTAATCTTCCACT 59.458 55.000 0.00 0.00 0.00 4.00
155 156 1.760613 CACCGCCCTAATCTTCCACTA 59.239 52.381 0.00 0.00 0.00 2.74
156 157 2.040178 ACCGCCCTAATCTTCCACTAG 58.960 52.381 0.00 0.00 0.00 2.57
157 158 1.270358 CCGCCCTAATCTTCCACTAGC 60.270 57.143 0.00 0.00 0.00 3.42
158 159 1.412710 CGCCCTAATCTTCCACTAGCA 59.587 52.381 0.00 0.00 0.00 3.49
159 160 2.158957 CGCCCTAATCTTCCACTAGCAA 60.159 50.000 0.00 0.00 0.00 3.91
160 161 3.471680 GCCCTAATCTTCCACTAGCAAG 58.528 50.000 0.00 0.00 0.00 4.01
161 162 3.471680 CCCTAATCTTCCACTAGCAAGC 58.528 50.000 0.00 0.00 0.00 4.01
162 163 3.118261 CCCTAATCTTCCACTAGCAAGCA 60.118 47.826 0.00 0.00 0.00 3.91
163 164 4.517285 CCTAATCTTCCACTAGCAAGCAA 58.483 43.478 0.00 0.00 0.00 3.91
164 165 4.333926 CCTAATCTTCCACTAGCAAGCAAC 59.666 45.833 0.00 0.00 0.00 4.17
165 166 1.795768 TCTTCCACTAGCAAGCAACG 58.204 50.000 0.00 0.00 0.00 4.10
166 167 1.343142 TCTTCCACTAGCAAGCAACGA 59.657 47.619 0.00 0.00 0.00 3.85
167 168 1.461127 CTTCCACTAGCAAGCAACGAC 59.539 52.381 0.00 0.00 0.00 4.34
168 169 0.391228 TCCACTAGCAAGCAACGACA 59.609 50.000 0.00 0.00 0.00 4.35
169 170 0.512952 CCACTAGCAAGCAACGACAC 59.487 55.000 0.00 0.00 0.00 3.67
170 171 1.217001 CACTAGCAAGCAACGACACA 58.783 50.000 0.00 0.00 0.00 3.72
171 172 1.800586 CACTAGCAAGCAACGACACAT 59.199 47.619 0.00 0.00 0.00 3.21
172 173 1.800586 ACTAGCAAGCAACGACACATG 59.199 47.619 0.00 0.00 0.00 3.21
173 174 0.516877 TAGCAAGCAACGACACATGC 59.483 50.000 0.00 0.00 42.87 4.06
179 180 1.714794 GCAACGACACATGCTACTCT 58.285 50.000 0.00 0.00 39.46 3.24
180 181 2.876091 GCAACGACACATGCTACTCTA 58.124 47.619 0.00 0.00 39.46 2.43
181 182 3.250744 GCAACGACACATGCTACTCTAA 58.749 45.455 0.00 0.00 39.46 2.10
182 183 3.865745 GCAACGACACATGCTACTCTAAT 59.134 43.478 0.00 0.00 39.46 1.73
183 184 4.259970 GCAACGACACATGCTACTCTAATG 60.260 45.833 0.00 0.00 39.46 1.90
184 185 4.046938 ACGACACATGCTACTCTAATGG 57.953 45.455 0.00 0.00 0.00 3.16
185 186 3.699538 ACGACACATGCTACTCTAATGGA 59.300 43.478 0.00 0.00 0.00 3.41
186 187 4.159693 ACGACACATGCTACTCTAATGGAA 59.840 41.667 0.00 0.00 0.00 3.53
187 188 4.504461 CGACACATGCTACTCTAATGGAAC 59.496 45.833 0.00 0.00 0.00 3.62
202 203 2.382882 TGGAACACTTGGAAATGCACA 58.617 42.857 0.00 0.00 0.00 4.57
203 204 2.964464 TGGAACACTTGGAAATGCACAT 59.036 40.909 0.00 0.00 0.00 3.21
204 205 3.387374 TGGAACACTTGGAAATGCACATT 59.613 39.130 0.00 0.00 0.00 2.71
205 206 4.141756 TGGAACACTTGGAAATGCACATTT 60.142 37.500 8.30 8.30 43.14 2.32
206 207 4.211794 GGAACACTTGGAAATGCACATTTG 59.788 41.667 13.08 1.69 40.77 2.32
207 208 3.731089 ACACTTGGAAATGCACATTTGG 58.269 40.909 13.08 4.08 40.77 3.28
208 209 3.134442 ACACTTGGAAATGCACATTTGGT 59.866 39.130 13.08 4.61 40.77 3.67
209 210 4.128643 CACTTGGAAATGCACATTTGGTT 58.871 39.130 13.08 0.00 40.77 3.67
210 211 5.163364 ACACTTGGAAATGCACATTTGGTTA 60.163 36.000 13.08 0.00 40.77 2.85
211 212 5.757320 CACTTGGAAATGCACATTTGGTTAA 59.243 36.000 13.08 3.09 40.77 2.01
212 213 5.757808 ACTTGGAAATGCACATTTGGTTAAC 59.242 36.000 13.08 0.00 40.77 2.01
213 214 5.543507 TGGAAATGCACATTTGGTTAACT 57.456 34.783 13.08 0.00 40.77 2.24
214 215 5.923204 TGGAAATGCACATTTGGTTAACTT 58.077 33.333 13.08 0.00 40.77 2.66
215 216 7.055667 TGGAAATGCACATTTGGTTAACTTA 57.944 32.000 13.08 0.00 40.77 2.24
216 217 7.500992 TGGAAATGCACATTTGGTTAACTTAA 58.499 30.769 13.08 0.70 40.77 1.85
217 218 7.987458 TGGAAATGCACATTTGGTTAACTTAAA 59.013 29.630 13.08 8.09 40.77 1.52
218 219 8.998377 GGAAATGCACATTTGGTTAACTTAAAT 58.002 29.630 13.08 9.91 40.77 1.40
221 222 9.553064 AATGCACATTTGGTTAACTTAAATTGA 57.447 25.926 14.49 9.44 0.00 2.57
222 223 8.948631 TGCACATTTGGTTAACTTAAATTGAA 57.051 26.923 14.49 10.34 0.00 2.69
223 224 9.553064 TGCACATTTGGTTAACTTAAATTGAAT 57.447 25.926 14.49 3.91 0.00 2.57
229 230 9.685828 TTTGGTTAACTTAAATTGAATCGAAGG 57.314 29.630 5.42 0.00 0.00 3.46
230 231 7.309920 TGGTTAACTTAAATTGAATCGAAGGC 58.690 34.615 5.42 0.00 0.00 4.35
231 232 7.040340 TGGTTAACTTAAATTGAATCGAAGGCA 60.040 33.333 5.42 0.00 0.00 4.75
232 233 7.973944 GGTTAACTTAAATTGAATCGAAGGCAT 59.026 33.333 5.42 0.00 0.00 4.40
233 234 9.997482 GTTAACTTAAATTGAATCGAAGGCATA 57.003 29.630 0.00 0.00 0.00 3.14
234 235 9.997482 TTAACTTAAATTGAATCGAAGGCATAC 57.003 29.630 0.00 0.00 0.00 2.39
235 236 7.624360 ACTTAAATTGAATCGAAGGCATACA 57.376 32.000 0.00 0.00 0.00 2.29
236 237 8.225603 ACTTAAATTGAATCGAAGGCATACAT 57.774 30.769 0.00 0.00 0.00 2.29
237 238 9.337396 ACTTAAATTGAATCGAAGGCATACATA 57.663 29.630 0.00 0.00 0.00 2.29
238 239 9.599322 CTTAAATTGAATCGAAGGCATACATAC 57.401 33.333 0.00 0.00 0.00 2.39
239 240 6.560253 AATTGAATCGAAGGCATACATACC 57.440 37.500 0.00 0.00 0.00 2.73
240 241 4.681074 TGAATCGAAGGCATACATACCA 57.319 40.909 0.00 0.00 0.00 3.25
241 242 5.227569 TGAATCGAAGGCATACATACCAT 57.772 39.130 0.00 0.00 0.00 3.55
242 243 5.237815 TGAATCGAAGGCATACATACCATC 58.762 41.667 0.00 0.00 0.00 3.51
243 244 5.012046 TGAATCGAAGGCATACATACCATCT 59.988 40.000 0.00 0.00 0.00 2.90
244 245 6.210584 TGAATCGAAGGCATACATACCATCTA 59.789 38.462 0.00 0.00 0.00 1.98
245 246 5.386958 TCGAAGGCATACATACCATCTAC 57.613 43.478 0.00 0.00 0.00 2.59
246 247 4.830600 TCGAAGGCATACATACCATCTACA 59.169 41.667 0.00 0.00 0.00 2.74
247 248 4.923871 CGAAGGCATACATACCATCTACAC 59.076 45.833 0.00 0.00 0.00 2.90
248 249 5.279006 CGAAGGCATACATACCATCTACACT 60.279 44.000 0.00 0.00 0.00 3.55
249 250 5.730296 AGGCATACATACCATCTACACTC 57.270 43.478 0.00 0.00 0.00 3.51
250 251 4.528596 AGGCATACATACCATCTACACTCC 59.471 45.833 0.00 0.00 0.00 3.85
251 252 4.528596 GGCATACATACCATCTACACTCCT 59.471 45.833 0.00 0.00 0.00 3.69
252 253 5.012148 GGCATACATACCATCTACACTCCTT 59.988 44.000 0.00 0.00 0.00 3.36
253 254 5.928839 GCATACATACCATCTACACTCCTTG 59.071 44.000 0.00 0.00 0.00 3.61
254 255 4.408182 ACATACCATCTACACTCCTTGC 57.592 45.455 0.00 0.00 0.00 4.01
255 256 3.774766 ACATACCATCTACACTCCTTGCA 59.225 43.478 0.00 0.00 0.00 4.08
256 257 4.225042 ACATACCATCTACACTCCTTGCAA 59.775 41.667 0.00 0.00 0.00 4.08
257 258 3.059352 ACCATCTACACTCCTTGCAAC 57.941 47.619 0.00 0.00 0.00 4.17
258 259 2.371841 ACCATCTACACTCCTTGCAACA 59.628 45.455 0.00 0.00 0.00 3.33
259 260 3.005554 CCATCTACACTCCTTGCAACAG 58.994 50.000 0.00 0.00 0.00 3.16
260 261 3.306989 CCATCTACACTCCTTGCAACAGA 60.307 47.826 0.00 0.00 0.00 3.41
261 262 3.667497 TCTACACTCCTTGCAACAGAG 57.333 47.619 16.64 16.64 0.00 3.35
262 263 2.300152 TCTACACTCCTTGCAACAGAGG 59.700 50.000 20.47 10.55 31.70 3.69
263 264 0.109342 ACACTCCTTGCAACAGAGGG 59.891 55.000 18.32 18.32 37.08 4.30
264 265 0.109342 CACTCCTTGCAACAGAGGGT 59.891 55.000 20.47 8.08 33.73 4.34
265 266 1.347707 CACTCCTTGCAACAGAGGGTA 59.652 52.381 20.47 0.00 33.73 3.69
266 267 1.625818 ACTCCTTGCAACAGAGGGTAG 59.374 52.381 20.47 7.68 33.73 3.18
267 268 0.984230 TCCTTGCAACAGAGGGTAGG 59.016 55.000 0.00 0.00 33.73 3.18
268 269 0.035056 CCTTGCAACAGAGGGTAGGG 60.035 60.000 0.00 0.00 0.00 3.53
269 270 0.984230 CTTGCAACAGAGGGTAGGGA 59.016 55.000 0.00 0.00 0.00 4.20
270 271 0.984230 TTGCAACAGAGGGTAGGGAG 59.016 55.000 0.00 0.00 0.00 4.30
271 272 0.909610 TGCAACAGAGGGTAGGGAGG 60.910 60.000 0.00 0.00 0.00 4.30
272 273 1.908483 CAACAGAGGGTAGGGAGGC 59.092 63.158 0.00 0.00 0.00 4.70
273 274 0.909610 CAACAGAGGGTAGGGAGGCA 60.910 60.000 0.00 0.00 0.00 4.75
274 275 0.178873 AACAGAGGGTAGGGAGGCAA 60.179 55.000 0.00 0.00 0.00 4.52
275 276 0.178873 ACAGAGGGTAGGGAGGCAAA 60.179 55.000 0.00 0.00 0.00 3.68
276 277 0.543749 CAGAGGGTAGGGAGGCAAAG 59.456 60.000 0.00 0.00 0.00 2.77
277 278 0.417841 AGAGGGTAGGGAGGCAAAGA 59.582 55.000 0.00 0.00 0.00 2.52
278 279 1.203440 AGAGGGTAGGGAGGCAAAGAA 60.203 52.381 0.00 0.00 0.00 2.52
279 280 1.210722 GAGGGTAGGGAGGCAAAGAAG 59.789 57.143 0.00 0.00 0.00 2.85
280 281 0.394488 GGGTAGGGAGGCAAAGAAGC 60.394 60.000 0.00 0.00 0.00 3.86
281 282 0.328258 GGTAGGGAGGCAAAGAAGCA 59.672 55.000 0.00 0.00 35.83 3.91
282 283 1.271926 GGTAGGGAGGCAAAGAAGCAA 60.272 52.381 0.00 0.00 35.83 3.91
287 288 2.546584 GGGAGGCAAAGAAGCAACAAAG 60.547 50.000 0.00 0.00 35.83 2.77
299 300 0.313987 CAACAAAGAAAGACGGGGGC 59.686 55.000 0.00 0.00 0.00 5.80
300 301 1.170290 AACAAAGAAAGACGGGGGCG 61.170 55.000 0.00 0.00 0.00 6.13
301 302 2.671963 AAAGAAAGACGGGGGCGC 60.672 61.111 0.00 0.00 0.00 6.53
302 303 3.485346 AAAGAAAGACGGGGGCGCA 62.485 57.895 10.83 0.00 0.00 6.09
303 304 4.699522 AGAAAGACGGGGGCGCAC 62.700 66.667 10.83 4.83 0.00 5.34
308 309 4.460683 GACGGGGGCGCACACATA 62.461 66.667 14.81 0.00 0.00 2.29
309 310 4.467084 ACGGGGGCGCACACATAG 62.467 66.667 14.81 0.00 0.00 2.23
310 311 4.155733 CGGGGGCGCACACATAGA 62.156 66.667 14.81 0.00 0.00 1.98
336 337 3.961414 GGCCGTCCAACCCCAAGA 61.961 66.667 0.00 0.00 0.00 3.02
337 338 2.359975 GCCGTCCAACCCCAAGAG 60.360 66.667 0.00 0.00 0.00 2.85
338 339 2.359975 CCGTCCAACCCCAAGAGC 60.360 66.667 0.00 0.00 0.00 4.09
339 340 2.429930 CGTCCAACCCCAAGAGCA 59.570 61.111 0.00 0.00 0.00 4.26
340 341 1.228124 CGTCCAACCCCAAGAGCAA 60.228 57.895 0.00 0.00 0.00 3.91
341 342 1.237285 CGTCCAACCCCAAGAGCAAG 61.237 60.000 0.00 0.00 0.00 4.01
342 343 0.110486 GTCCAACCCCAAGAGCAAGA 59.890 55.000 0.00 0.00 0.00 3.02
343 344 0.401738 TCCAACCCCAAGAGCAAGAG 59.598 55.000 0.00 0.00 0.00 2.85
350 351 2.015587 CCCAAGAGCAAGAGCAAGATC 58.984 52.381 0.00 0.00 45.49 2.75
521 541 4.354162 GCCGCTTTACCCCACCCA 62.354 66.667 0.00 0.00 0.00 4.51
660 703 4.619227 CGTGCCGAACCCACCACT 62.619 66.667 0.00 0.00 0.00 4.00
661 704 2.978010 GTGCCGAACCCACCACTG 60.978 66.667 0.00 0.00 0.00 3.66
662 705 3.484806 TGCCGAACCCACCACTGT 61.485 61.111 0.00 0.00 0.00 3.55
663 706 2.978010 GCCGAACCCACCACTGTG 60.978 66.667 0.00 0.00 42.39 3.66
664 707 2.978010 CCGAACCCACCACTGTGC 60.978 66.667 1.29 0.00 41.35 4.57
665 708 2.978010 CGAACCCACCACTGTGCC 60.978 66.667 1.29 0.00 41.35 5.01
713 759 2.046313 CGCTGCTTTTCACAATCACAC 58.954 47.619 0.00 0.00 0.00 3.82
714 760 2.541383 CGCTGCTTTTCACAATCACACA 60.541 45.455 0.00 0.00 0.00 3.72
716 762 3.488310 GCTGCTTTTCACAATCACACAAG 59.512 43.478 0.00 0.00 0.00 3.16
717 763 4.044336 TGCTTTTCACAATCACACAAGG 57.956 40.909 0.00 0.00 0.00 3.61
718 764 2.796593 GCTTTTCACAATCACACAAGGC 59.203 45.455 0.00 0.00 0.00 4.35
719 765 2.772568 TTTCACAATCACACAAGGCG 57.227 45.000 0.00 0.00 0.00 5.52
720 766 0.950836 TTCACAATCACACAAGGCGG 59.049 50.000 0.00 0.00 0.00 6.13
721 767 0.888736 TCACAATCACACAAGGCGGG 60.889 55.000 0.00 0.00 0.00 6.13
722 768 2.268076 ACAATCACACAAGGCGGGC 61.268 57.895 0.00 0.00 0.00 6.13
723 769 3.055719 AATCACACAAGGCGGGCG 61.056 61.111 0.00 0.00 0.00 6.13
740 786 3.771160 GGGCGGGCGAGAGAGAAA 61.771 66.667 0.00 0.00 0.00 2.52
741 787 2.501610 GGCGGGCGAGAGAGAAAT 59.498 61.111 0.00 0.00 0.00 2.17
750 796 5.057149 GGGCGAGAGAGAAATAAAATAGCA 58.943 41.667 0.00 0.00 0.00 3.49
783 829 2.478746 CCGCATCGGTTTGAACGG 59.521 61.111 0.00 0.00 42.73 4.44
812 863 2.616376 ACCGTCGATCATCTCTCTTCAG 59.384 50.000 0.00 0.00 0.00 3.02
817 868 5.645624 GTCGATCATCTCTCTTCAGAACAA 58.354 41.667 0.00 0.00 0.00 2.83
821 872 2.051879 TCTCTCTTCAGAACAACGCG 57.948 50.000 3.53 3.53 0.00 6.01
826 877 3.793775 TTCAGAACAACGCGGCGGA 62.794 57.895 27.37 9.24 0.00 5.54
874 936 4.995058 TTTCCCGTCCCCTGCCCT 62.995 66.667 0.00 0.00 0.00 5.19
875 937 4.995058 TTCCCGTCCCCTGCCCTT 62.995 66.667 0.00 0.00 0.00 3.95
883 945 2.625460 CCCCTGCCCTTTCCATCCA 61.625 63.158 0.00 0.00 0.00 3.41
887 949 0.468771 CTGCCCTTTCCATCCATCCC 60.469 60.000 0.00 0.00 0.00 3.85
992 1057 2.621486 CCAGCTAGGGTTAGGGCTT 58.379 57.895 0.00 0.00 32.30 4.35
993 1058 0.181350 CCAGCTAGGGTTAGGGCTTG 59.819 60.000 0.00 0.00 32.30 4.01
994 1059 0.464554 CAGCTAGGGTTAGGGCTTGC 60.465 60.000 0.00 0.00 32.30 4.01
995 1060 1.152943 GCTAGGGTTAGGGCTTGCC 60.153 63.158 2.49 2.49 0.00 4.52
1605 1847 2.801631 GGAGCCCCTCATGGTCTCG 61.802 68.421 0.00 0.00 34.16 4.04
1641 1883 1.449778 GCAGGGGCTTAAGACGGTC 60.450 63.158 6.67 0.00 36.96 4.79
1688 1930 3.646715 CTTCAACCCCCGCCTCCA 61.647 66.667 0.00 0.00 0.00 3.86
1722 1964 1.300971 GCAAGCCTGTCATCGAGCAA 61.301 55.000 0.00 0.00 0.00 3.91
1823 2066 3.740115 TGCTACACCCTGTTTCTCTTTC 58.260 45.455 0.00 0.00 0.00 2.62
1966 2212 3.843027 AGTGTGAGAAGTGGATTCAGGAT 59.157 43.478 0.00 0.00 40.67 3.24
1994 2240 0.031721 GTCCAACGAGTCCAAGACGT 59.968 55.000 0.00 0.00 41.97 4.34
2023 2269 0.394216 TGAATCACCTCATTGGCCGG 60.394 55.000 0.00 0.00 40.22 6.13
2489 2735 1.519234 TATGGCTGCTCGCAAGACG 60.519 57.895 0.00 0.00 45.01 4.18
2525 2771 3.318017 CCAGAAGACTTCGAATGTCGTT 58.682 45.455 9.53 12.90 41.35 3.85
2565 2812 4.911610 CGCTGGTAATTTTTGTTGACTCAG 59.088 41.667 0.00 0.00 0.00 3.35
2605 2852 3.570550 CCTAGCTGTGTACTCCACTATCC 59.429 52.174 0.00 0.00 44.81 2.59
2818 3065 8.447787 TTTCAAATTTGCTAATTAACTCGCTC 57.552 30.769 13.54 0.00 32.85 5.03
2862 3109 1.150135 ACCCTTTCTCTCTCAGGTCCA 59.850 52.381 0.00 0.00 0.00 4.02
3045 3292 8.196771 TGTTACTTACGAGGTAAACTTGAAGAA 58.803 33.333 0.00 0.00 34.46 2.52
3055 3302 9.399403 GAGGTAAACTTGAAGAATTGATTTCAC 57.601 33.333 0.00 0.00 36.75 3.18
3061 3308 6.912591 ACTTGAAGAATTGATTTCACAACGAC 59.087 34.615 0.00 0.00 36.75 4.34
3137 3384 5.695851 AGCAAACAGTCCAGAAGTTATTG 57.304 39.130 0.00 0.00 0.00 1.90
3200 3447 4.839121 TGTCCCTCGCTGTAATTTATGTT 58.161 39.130 0.00 0.00 0.00 2.71
3231 3478 5.725110 AGTTGCTATAAAAGATGCAGTCG 57.275 39.130 0.00 0.00 36.75 4.18
3315 3562 6.769512 AGGAAGAATGCACAACTTTACTCTA 58.230 36.000 0.00 0.00 0.00 2.43
3396 3643 8.793592 GGTAATTACTCTGAATTTCAACAGGTT 58.206 33.333 15.05 1.12 35.20 3.50
3459 3706 7.996644 TCCACTTTAAGTTCCAATCAAGTTACT 59.003 33.333 0.00 0.00 0.00 2.24
3674 3926 0.112995 AGACAAATGCTTCTGGCCCA 59.887 50.000 0.00 0.00 40.92 5.36
3744 3996 8.877864 ACCAGAATTTCACCAGATTATGTTTA 57.122 30.769 0.00 0.00 0.00 2.01
3768 4020 1.221840 CCAGTGGAGCAGCCGTAAT 59.778 57.895 1.68 0.00 40.66 1.89
3824 4076 4.360951 AAGATAACTTGAACCGGGTTGA 57.639 40.909 18.88 5.93 34.80 3.18
4177 4432 4.755123 ACCTCTTTTTGGTGTTACTGATCG 59.245 41.667 0.00 0.00 36.30 3.69
4178 4433 4.154195 CCTCTTTTTGGTGTTACTGATCGG 59.846 45.833 0.00 0.00 0.00 4.18
4179 4434 4.069304 TCTTTTTGGTGTTACTGATCGGG 58.931 43.478 6.47 0.00 0.00 5.14
4181 4436 0.035820 TTGGTGTTACTGATCGGGCC 60.036 55.000 6.47 0.00 0.00 5.80
4182 4437 1.520787 GGTGTTACTGATCGGGCCG 60.521 63.158 22.51 22.51 0.00 6.13
4184 4439 0.527817 GTGTTACTGATCGGGCCGAG 60.528 60.000 33.82 22.42 39.91 4.63
4185 4440 0.968901 TGTTACTGATCGGGCCGAGT 60.969 55.000 33.82 26.73 39.91 4.18
4187 4442 0.899720 TTACTGATCGGGCCGAGTTT 59.100 50.000 33.82 18.19 39.91 2.66
4188 4443 0.899720 TACTGATCGGGCCGAGTTTT 59.100 50.000 33.82 17.77 39.91 2.43
4189 4444 0.673644 ACTGATCGGGCCGAGTTTTG 60.674 55.000 33.82 21.83 39.91 2.44
4190 4445 0.673644 CTGATCGGGCCGAGTTTTGT 60.674 55.000 33.82 16.51 39.91 2.83
4257 4571 0.040958 GAACGAACAGGCAGCTTGTG 60.041 55.000 11.53 2.04 0.00 3.33
4335 4653 3.386078 TCTGACTGCTCAAGAACTTCAGT 59.614 43.478 6.97 6.97 40.31 3.41
4417 4735 3.190535 GCTGATTGTGGTTAATGGTCGTT 59.809 43.478 0.00 0.00 0.00 3.85
4418 4736 4.320935 GCTGATTGTGGTTAATGGTCGTTT 60.321 41.667 0.00 0.00 0.00 3.60
4560 4883 2.224079 CGTTGTTGTGCTGCAGTATCTT 59.776 45.455 16.64 0.00 0.00 2.40
4567 4890 3.007290 TGTGCTGCAGTATCTTTCTCTGT 59.993 43.478 16.64 0.00 0.00 3.41
4580 4903 4.220602 TCTTTCTCTGTCGATGAACATGGA 59.779 41.667 0.00 0.00 0.00 3.41
4581 4904 3.790152 TCTCTGTCGATGAACATGGAG 57.210 47.619 0.00 0.00 0.00 3.86
4684 5007 1.948104 TGAACCGCCGGATCTAAATG 58.052 50.000 11.71 0.00 0.00 2.32
4690 5013 1.873903 CGCCGGATCTAAATGGAGTGG 60.874 57.143 5.05 0.00 0.00 4.00
4714 5038 5.867716 GTCCAGATCATTTTACTGTACACGT 59.132 40.000 0.00 0.00 0.00 4.49
4748 5072 1.612726 GCAACAGCTCTCCTGGTCATT 60.613 52.381 0.00 0.00 40.26 2.57
4758 5086 3.452264 TCTCCTGGTCATTCTGTACCATG 59.548 47.826 0.00 0.00 44.56 3.66
4760 5088 2.356022 CCTGGTCATTCTGTACCATGCA 60.356 50.000 0.00 0.00 44.56 3.96
4761 5089 3.548770 CTGGTCATTCTGTACCATGCAT 58.451 45.455 0.00 0.00 44.56 3.96
4762 5090 3.544684 TGGTCATTCTGTACCATGCATC 58.455 45.455 0.00 0.00 40.84 3.91
4763 5091 2.880890 GGTCATTCTGTACCATGCATCC 59.119 50.000 0.00 0.00 35.73 3.51
4765 5093 2.433970 TCATTCTGTACCATGCATCCGA 59.566 45.455 0.00 0.00 0.00 4.55
4766 5094 2.602257 TTCTGTACCATGCATCCGAG 57.398 50.000 0.00 0.00 0.00 4.63
4767 5095 0.752658 TCTGTACCATGCATCCGAGG 59.247 55.000 0.00 0.00 0.00 4.63
4768 5096 0.465705 CTGTACCATGCATCCGAGGT 59.534 55.000 10.91 10.91 38.14 3.85
4769 5097 1.686587 CTGTACCATGCATCCGAGGTA 59.313 52.381 9.08 9.08 35.62 3.08
4770 5098 2.300152 CTGTACCATGCATCCGAGGTAT 59.700 50.000 14.72 0.00 38.73 2.73
4771 5099 2.037121 TGTACCATGCATCCGAGGTATG 59.963 50.000 14.72 4.34 38.73 2.39
4773 5101 2.325484 ACCATGCATCCGAGGTATGTA 58.675 47.619 9.75 0.00 31.32 2.29
4774 5102 2.037251 ACCATGCATCCGAGGTATGTAC 59.963 50.000 9.75 0.00 31.32 2.90
4775 5103 2.612972 CCATGCATCCGAGGTATGTACC 60.613 54.545 9.75 0.81 46.82 3.34
4803 5131 6.888632 AGCATGTCCTTATCTGAAATTTGACT 59.111 34.615 0.00 0.00 0.00 3.41
4824 5152 2.529780 CTCATAGAGAGGCAAGCCAG 57.470 55.000 14.40 0.00 40.84 4.85
4931 5270 0.730265 TGCCCGATCGCAACAATAAC 59.270 50.000 10.32 0.00 35.32 1.89
4933 5272 1.374560 CCCGATCGCAACAATAACCA 58.625 50.000 10.32 0.00 0.00 3.67
4953 5292 2.689553 TCAGCACGATAATTCTGGCA 57.310 45.000 0.00 0.00 0.00 4.92
4964 5303 2.793278 ATTCTGGCAAAAACCGTGAC 57.207 45.000 0.00 0.00 0.00 3.67
4969 5308 0.316689 GGCAAAAACCGTGACGTCTG 60.317 55.000 17.92 9.20 0.00 3.51
4973 5312 0.534203 AAAACCGTGACGTCTGGCAT 60.534 50.000 22.24 12.07 0.00 4.40
5027 5366 0.606604 CAATTGAGCCTGCAAGCCTT 59.393 50.000 3.00 0.00 0.00 4.35
5044 5383 2.760092 GCCTTCATATTTGGCAGTTGGA 59.240 45.455 0.00 0.00 45.46 3.53
5065 5404 0.468648 AGAGGGTATTTAGGGCGCAC 59.531 55.000 10.83 5.15 0.00 5.34
5073 5412 3.560636 ATTTAGGGCGCACTACATCTT 57.439 42.857 21.37 0.00 0.00 2.40
5114 5453 2.092753 TGACATTTCCCCATCTGCTCTC 60.093 50.000 0.00 0.00 0.00 3.20
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 4.319766 CCGTGTGATTTGACAAAGAGAAGG 60.320 45.833 6.77 2.79 0.00 3.46
3 4 3.003275 GCCGTGTGATTTGACAAAGAGAA 59.997 43.478 6.77 0.00 0.00 2.87
5 6 2.549754 AGCCGTGTGATTTGACAAAGAG 59.450 45.455 6.77 0.00 0.00 2.85
6 7 2.571212 AGCCGTGTGATTTGACAAAGA 58.429 42.857 6.77 0.00 0.00 2.52
7 8 3.044986 CAAGCCGTGTGATTTGACAAAG 58.955 45.455 6.77 0.00 0.00 2.77
8 9 2.425312 ACAAGCCGTGTGATTTGACAAA 59.575 40.909 2.48 2.48 39.72 2.83
9 10 2.020720 ACAAGCCGTGTGATTTGACAA 58.979 42.857 0.00 0.00 39.72 3.18
10 11 1.674359 ACAAGCCGTGTGATTTGACA 58.326 45.000 0.00 0.00 39.72 3.58
11 12 2.774439 AACAAGCCGTGTGATTTGAC 57.226 45.000 0.00 0.00 40.60 3.18
12 13 3.791973 AAAACAAGCCGTGTGATTTGA 57.208 38.095 0.00 0.00 40.60 2.69
13 14 5.116983 GTGATAAAACAAGCCGTGTGATTTG 59.883 40.000 0.00 0.00 40.60 2.32
14 15 5.009610 AGTGATAAAACAAGCCGTGTGATTT 59.990 36.000 0.00 0.00 40.60 2.17
15 16 4.518970 AGTGATAAAACAAGCCGTGTGATT 59.481 37.500 0.00 0.00 40.60 2.57
16 17 4.072131 AGTGATAAAACAAGCCGTGTGAT 58.928 39.130 0.00 0.00 40.60 3.06
17 18 3.472652 AGTGATAAAACAAGCCGTGTGA 58.527 40.909 0.00 0.00 40.60 3.58
18 19 3.896648 AGTGATAAAACAAGCCGTGTG 57.103 42.857 0.00 0.00 40.60 3.82
19 20 4.638304 AGTAGTGATAAAACAAGCCGTGT 58.362 39.130 0.00 0.00 44.64 4.49
20 21 6.903883 ATAGTAGTGATAAAACAAGCCGTG 57.096 37.500 0.00 0.00 0.00 4.94
21 22 7.277981 CAGAATAGTAGTGATAAAACAAGCCGT 59.722 37.037 0.00 0.00 0.00 5.68
22 23 7.491372 TCAGAATAGTAGTGATAAAACAAGCCG 59.509 37.037 0.00 0.00 0.00 5.52
23 24 8.718102 TCAGAATAGTAGTGATAAAACAAGCC 57.282 34.615 0.00 0.00 0.00 4.35
34 35 9.920133 GATAAAGCATGATCAGAATAGTAGTGA 57.080 33.333 0.09 0.00 0.00 3.41
35 36 9.926158 AGATAAAGCATGATCAGAATAGTAGTG 57.074 33.333 0.09 0.00 0.00 2.74
82 83 9.822185 GGAAATATGAGCAATTTACCAAAAGAT 57.178 29.630 0.00 0.00 0.00 2.40
83 84 8.811017 TGGAAATATGAGCAATTTACCAAAAGA 58.189 29.630 0.00 0.00 0.00 2.52
84 85 9.434420 TTGGAAATATGAGCAATTTACCAAAAG 57.566 29.630 0.00 0.00 34.39 2.27
85 86 9.213799 GTTGGAAATATGAGCAATTTACCAAAA 57.786 29.630 0.00 0.00 36.45 2.44
86 87 8.370940 TGTTGGAAATATGAGCAATTTACCAAA 58.629 29.630 0.00 0.00 36.45 3.28
87 88 7.901029 TGTTGGAAATATGAGCAATTTACCAA 58.099 30.769 0.00 0.00 34.63 3.67
88 89 7.363705 CCTGTTGGAAATATGAGCAATTTACCA 60.364 37.037 0.00 0.00 34.57 3.25
89 90 6.980397 CCTGTTGGAAATATGAGCAATTTACC 59.020 38.462 0.00 0.00 34.57 2.85
90 91 7.702348 GTCCTGTTGGAAATATGAGCAATTTAC 59.298 37.037 0.00 0.00 45.18 2.01
91 92 7.395772 TGTCCTGTTGGAAATATGAGCAATTTA 59.604 33.333 0.00 0.00 45.18 1.40
92 93 6.211184 TGTCCTGTTGGAAATATGAGCAATTT 59.789 34.615 0.00 0.00 45.18 1.82
93 94 5.716228 TGTCCTGTTGGAAATATGAGCAATT 59.284 36.000 0.00 0.00 45.18 2.32
94 95 5.126061 GTGTCCTGTTGGAAATATGAGCAAT 59.874 40.000 0.00 0.00 45.18 3.56
95 96 4.458989 GTGTCCTGTTGGAAATATGAGCAA 59.541 41.667 0.00 0.00 45.18 3.91
96 97 4.009675 GTGTCCTGTTGGAAATATGAGCA 58.990 43.478 0.00 0.00 45.18 4.26
97 98 3.063997 CGTGTCCTGTTGGAAATATGAGC 59.936 47.826 0.00 0.00 45.18 4.26
98 99 4.330074 GTCGTGTCCTGTTGGAAATATGAG 59.670 45.833 0.00 0.00 45.18 2.90
99 100 4.250464 GTCGTGTCCTGTTGGAAATATGA 58.750 43.478 0.00 0.00 45.18 2.15
100 101 4.000325 TGTCGTGTCCTGTTGGAAATATG 59.000 43.478 0.00 0.00 45.18 1.78
101 102 4.000988 GTGTCGTGTCCTGTTGGAAATAT 58.999 43.478 0.00 0.00 45.18 1.28
102 103 3.395639 GTGTCGTGTCCTGTTGGAAATA 58.604 45.455 0.00 0.00 45.18 1.40
103 104 2.218603 GTGTCGTGTCCTGTTGGAAAT 58.781 47.619 0.00 0.00 45.18 2.17
104 105 1.658994 GTGTCGTGTCCTGTTGGAAA 58.341 50.000 0.00 0.00 45.18 3.13
105 106 0.179067 GGTGTCGTGTCCTGTTGGAA 60.179 55.000 0.00 0.00 45.18 3.53
106 107 1.444250 GGTGTCGTGTCCTGTTGGA 59.556 57.895 0.00 0.00 40.69 3.53
107 108 1.954146 CGGTGTCGTGTCCTGTTGG 60.954 63.158 0.00 0.00 0.00 3.77
108 109 0.528901 TTCGGTGTCGTGTCCTGTTG 60.529 55.000 0.00 0.00 37.69 3.33
109 110 0.249322 CTTCGGTGTCGTGTCCTGTT 60.249 55.000 0.00 0.00 37.69 3.16
110 111 1.362717 CTTCGGTGTCGTGTCCTGT 59.637 57.895 0.00 0.00 37.69 4.00
111 112 2.022129 GCTTCGGTGTCGTGTCCTG 61.022 63.158 0.00 0.00 37.69 3.86
112 113 2.338984 GCTTCGGTGTCGTGTCCT 59.661 61.111 0.00 0.00 37.69 3.85
113 114 3.103911 CGCTTCGGTGTCGTGTCC 61.104 66.667 0.00 0.00 37.69 4.02
114 115 3.764049 GCGCTTCGGTGTCGTGTC 61.764 66.667 0.00 0.00 37.69 3.67
131 132 3.400599 AAGATTAGGGCGGTGGCGG 62.401 63.158 0.00 0.00 41.24 6.13
132 133 1.887707 GAAGATTAGGGCGGTGGCG 60.888 63.158 0.00 0.00 41.24 5.69
133 134 1.526225 GGAAGATTAGGGCGGTGGC 60.526 63.158 0.00 0.00 38.90 5.01
134 135 0.463833 GTGGAAGATTAGGGCGGTGG 60.464 60.000 0.00 0.00 0.00 4.61
135 136 0.541863 AGTGGAAGATTAGGGCGGTG 59.458 55.000 0.00 0.00 0.00 4.94
136 137 2.040178 CTAGTGGAAGATTAGGGCGGT 58.960 52.381 0.00 0.00 0.00 5.68
137 138 1.270358 GCTAGTGGAAGATTAGGGCGG 60.270 57.143 0.00 0.00 0.00 6.13
138 139 1.412710 TGCTAGTGGAAGATTAGGGCG 59.587 52.381 0.00 0.00 0.00 6.13
139 140 3.471680 CTTGCTAGTGGAAGATTAGGGC 58.528 50.000 0.00 0.00 43.13 5.19
140 141 3.118261 TGCTTGCTAGTGGAAGATTAGGG 60.118 47.826 1.61 0.00 43.13 3.53
141 142 4.142609 TGCTTGCTAGTGGAAGATTAGG 57.857 45.455 1.61 0.00 43.13 2.69
142 143 4.033358 CGTTGCTTGCTAGTGGAAGATTAG 59.967 45.833 1.61 0.00 43.13 1.73
143 144 3.932710 CGTTGCTTGCTAGTGGAAGATTA 59.067 43.478 1.61 0.00 43.13 1.75
144 145 2.744202 CGTTGCTTGCTAGTGGAAGATT 59.256 45.455 1.61 0.00 43.13 2.40
145 146 2.028112 TCGTTGCTTGCTAGTGGAAGAT 60.028 45.455 1.61 0.00 43.13 2.40
146 147 1.343142 TCGTTGCTTGCTAGTGGAAGA 59.657 47.619 1.61 0.00 43.13 2.87
147 148 1.461127 GTCGTTGCTTGCTAGTGGAAG 59.539 52.381 0.00 0.00 43.30 3.46
148 149 1.202592 TGTCGTTGCTTGCTAGTGGAA 60.203 47.619 0.00 0.00 0.00 3.53
149 150 0.391228 TGTCGTTGCTTGCTAGTGGA 59.609 50.000 0.00 0.00 0.00 4.02
150 151 0.512952 GTGTCGTTGCTTGCTAGTGG 59.487 55.000 0.00 0.00 0.00 4.00
151 152 1.217001 TGTGTCGTTGCTTGCTAGTG 58.783 50.000 0.00 0.00 0.00 2.74
152 153 1.800586 CATGTGTCGTTGCTTGCTAGT 59.199 47.619 0.00 0.00 0.00 2.57
153 154 1.464687 GCATGTGTCGTTGCTTGCTAG 60.465 52.381 0.00 0.00 35.95 3.42
154 155 0.516877 GCATGTGTCGTTGCTTGCTA 59.483 50.000 0.00 0.00 35.95 3.49
155 156 1.168407 AGCATGTGTCGTTGCTTGCT 61.168 50.000 0.00 9.15 46.71 3.91
156 157 0.516877 TAGCATGTGTCGTTGCTTGC 59.483 50.000 2.43 0.00 46.71 4.01
157 158 1.800586 AGTAGCATGTGTCGTTGCTTG 59.199 47.619 2.43 0.00 46.71 4.01
158 159 2.069273 GAGTAGCATGTGTCGTTGCTT 58.931 47.619 2.43 0.00 46.71 3.91
160 161 1.714794 AGAGTAGCATGTGTCGTTGC 58.285 50.000 0.00 0.00 39.17 4.17
161 162 4.268644 CCATTAGAGTAGCATGTGTCGTTG 59.731 45.833 0.00 0.00 0.00 4.10
162 163 4.159693 TCCATTAGAGTAGCATGTGTCGTT 59.840 41.667 0.00 0.00 0.00 3.85
163 164 3.699538 TCCATTAGAGTAGCATGTGTCGT 59.300 43.478 0.00 0.00 0.00 4.34
164 165 4.307443 TCCATTAGAGTAGCATGTGTCG 57.693 45.455 0.00 0.00 0.00 4.35
165 166 5.292101 GTGTTCCATTAGAGTAGCATGTGTC 59.708 44.000 0.00 0.00 0.00 3.67
166 167 5.046304 AGTGTTCCATTAGAGTAGCATGTGT 60.046 40.000 0.00 0.00 0.00 3.72
167 168 5.423015 AGTGTTCCATTAGAGTAGCATGTG 58.577 41.667 0.00 0.00 0.00 3.21
168 169 5.683876 AGTGTTCCATTAGAGTAGCATGT 57.316 39.130 0.00 0.00 0.00 3.21
169 170 5.295292 CCAAGTGTTCCATTAGAGTAGCATG 59.705 44.000 0.00 0.00 0.00 4.06
170 171 5.189736 TCCAAGTGTTCCATTAGAGTAGCAT 59.810 40.000 0.00 0.00 0.00 3.79
171 172 4.530553 TCCAAGTGTTCCATTAGAGTAGCA 59.469 41.667 0.00 0.00 0.00 3.49
172 173 5.086104 TCCAAGTGTTCCATTAGAGTAGC 57.914 43.478 0.00 0.00 0.00 3.58
173 174 7.414540 GCATTTCCAAGTGTTCCATTAGAGTAG 60.415 40.741 0.00 0.00 0.00 2.57
174 175 6.374333 GCATTTCCAAGTGTTCCATTAGAGTA 59.626 38.462 0.00 0.00 0.00 2.59
175 176 5.183904 GCATTTCCAAGTGTTCCATTAGAGT 59.816 40.000 0.00 0.00 0.00 3.24
176 177 5.183713 TGCATTTCCAAGTGTTCCATTAGAG 59.816 40.000 0.00 0.00 0.00 2.43
177 178 5.048083 GTGCATTTCCAAGTGTTCCATTAGA 60.048 40.000 0.00 0.00 0.00 2.10
178 179 5.163513 GTGCATTTCCAAGTGTTCCATTAG 58.836 41.667 0.00 0.00 0.00 1.73
179 180 4.586421 TGTGCATTTCCAAGTGTTCCATTA 59.414 37.500 0.00 0.00 0.00 1.90
180 181 3.387374 TGTGCATTTCCAAGTGTTCCATT 59.613 39.130 0.00 0.00 0.00 3.16
181 182 2.964464 TGTGCATTTCCAAGTGTTCCAT 59.036 40.909 0.00 0.00 0.00 3.41
182 183 2.382882 TGTGCATTTCCAAGTGTTCCA 58.617 42.857 0.00 0.00 0.00 3.53
183 184 3.665745 ATGTGCATTTCCAAGTGTTCC 57.334 42.857 0.00 0.00 0.00 3.62
184 185 4.211794 CCAAATGTGCATTTCCAAGTGTTC 59.788 41.667 7.14 0.00 38.84 3.18
185 186 4.128643 CCAAATGTGCATTTCCAAGTGTT 58.871 39.130 7.14 0.00 38.84 3.32
186 187 3.134442 ACCAAATGTGCATTTCCAAGTGT 59.866 39.130 7.14 0.00 38.84 3.55
187 188 3.731089 ACCAAATGTGCATTTCCAAGTG 58.269 40.909 7.14 0.00 38.84 3.16
188 189 4.420522 AACCAAATGTGCATTTCCAAGT 57.579 36.364 7.14 1.62 38.84 3.16
189 190 5.990996 AGTTAACCAAATGTGCATTTCCAAG 59.009 36.000 7.14 1.10 38.84 3.61
190 191 5.923204 AGTTAACCAAATGTGCATTTCCAA 58.077 33.333 7.14 0.00 38.84 3.53
191 192 5.543507 AGTTAACCAAATGTGCATTTCCA 57.456 34.783 7.14 0.00 38.84 3.53
192 193 7.954788 TTAAGTTAACCAAATGTGCATTTCC 57.045 32.000 7.14 0.00 38.84 3.13
195 196 9.553064 TCAATTTAAGTTAACCAAATGTGCATT 57.447 25.926 13.61 0.00 0.00 3.56
196 197 9.553064 TTCAATTTAAGTTAACCAAATGTGCAT 57.447 25.926 13.61 0.07 0.00 3.96
197 198 8.948631 TTCAATTTAAGTTAACCAAATGTGCA 57.051 26.923 13.61 0.00 0.00 4.57
203 204 9.685828 CCTTCGATTCAATTTAAGTTAACCAAA 57.314 29.630 0.88 3.80 0.00 3.28
204 205 7.810759 GCCTTCGATTCAATTTAAGTTAACCAA 59.189 33.333 0.88 0.00 0.00 3.67
205 206 7.040340 TGCCTTCGATTCAATTTAAGTTAACCA 60.040 33.333 0.88 0.00 0.00 3.67
206 207 7.309920 TGCCTTCGATTCAATTTAAGTTAACC 58.690 34.615 0.88 0.00 0.00 2.85
207 208 8.911247 ATGCCTTCGATTCAATTTAAGTTAAC 57.089 30.769 0.00 0.00 0.00 2.01
208 209 9.997482 GTATGCCTTCGATTCAATTTAAGTTAA 57.003 29.630 0.00 0.00 0.00 2.01
209 210 9.168451 TGTATGCCTTCGATTCAATTTAAGTTA 57.832 29.630 0.00 0.00 0.00 2.24
210 211 8.050778 TGTATGCCTTCGATTCAATTTAAGTT 57.949 30.769 0.00 0.00 0.00 2.66
211 212 7.624360 TGTATGCCTTCGATTCAATTTAAGT 57.376 32.000 0.00 0.00 0.00 2.24
212 213 9.599322 GTATGTATGCCTTCGATTCAATTTAAG 57.401 33.333 0.00 0.00 0.00 1.85
213 214 8.564574 GGTATGTATGCCTTCGATTCAATTTAA 58.435 33.333 0.00 0.00 0.00 1.52
214 215 7.717436 TGGTATGTATGCCTTCGATTCAATTTA 59.283 33.333 0.78 0.00 33.30 1.40
215 216 6.545666 TGGTATGTATGCCTTCGATTCAATTT 59.454 34.615 0.78 0.00 33.30 1.82
216 217 6.061441 TGGTATGTATGCCTTCGATTCAATT 58.939 36.000 0.78 0.00 33.30 2.32
217 218 5.620206 TGGTATGTATGCCTTCGATTCAAT 58.380 37.500 0.78 0.00 33.30 2.57
218 219 5.029807 TGGTATGTATGCCTTCGATTCAA 57.970 39.130 0.78 0.00 33.30 2.69
219 220 4.681074 TGGTATGTATGCCTTCGATTCA 57.319 40.909 0.78 0.00 33.30 2.57
220 221 5.482908 AGATGGTATGTATGCCTTCGATTC 58.517 41.667 8.49 0.00 40.19 2.52
221 222 5.489792 AGATGGTATGTATGCCTTCGATT 57.510 39.130 8.49 0.00 40.19 3.34
222 223 5.480422 TGTAGATGGTATGTATGCCTTCGAT 59.520 40.000 8.49 0.00 40.19 3.59
223 224 4.830600 TGTAGATGGTATGTATGCCTTCGA 59.169 41.667 8.49 2.71 40.19 3.71
224 225 4.923871 GTGTAGATGGTATGTATGCCTTCG 59.076 45.833 8.49 0.00 40.19 3.79
225 226 6.102897 AGTGTAGATGGTATGTATGCCTTC 57.897 41.667 6.73 6.73 37.11 3.46
226 227 5.012148 GGAGTGTAGATGGTATGTATGCCTT 59.988 44.000 0.78 0.00 33.30 4.35
227 228 4.528596 GGAGTGTAGATGGTATGTATGCCT 59.471 45.833 0.78 0.00 33.30 4.75
228 229 4.528596 AGGAGTGTAGATGGTATGTATGCC 59.471 45.833 0.00 0.00 0.00 4.40
229 230 5.730296 AGGAGTGTAGATGGTATGTATGC 57.270 43.478 0.00 0.00 0.00 3.14
230 231 5.928839 GCAAGGAGTGTAGATGGTATGTATG 59.071 44.000 0.00 0.00 0.00 2.39
231 232 5.602561 TGCAAGGAGTGTAGATGGTATGTAT 59.397 40.000 0.00 0.00 0.00 2.29
232 233 4.959839 TGCAAGGAGTGTAGATGGTATGTA 59.040 41.667 0.00 0.00 0.00 2.29
233 234 3.774766 TGCAAGGAGTGTAGATGGTATGT 59.225 43.478 0.00 0.00 0.00 2.29
234 235 4.406648 TGCAAGGAGTGTAGATGGTATG 57.593 45.455 0.00 0.00 0.00 2.39
235 236 4.225042 TGTTGCAAGGAGTGTAGATGGTAT 59.775 41.667 0.00 0.00 0.00 2.73
236 237 3.580895 TGTTGCAAGGAGTGTAGATGGTA 59.419 43.478 0.00 0.00 0.00 3.25
237 238 2.371841 TGTTGCAAGGAGTGTAGATGGT 59.628 45.455 0.00 0.00 0.00 3.55
238 239 3.005554 CTGTTGCAAGGAGTGTAGATGG 58.994 50.000 0.00 0.00 0.00 3.51
239 240 3.930336 TCTGTTGCAAGGAGTGTAGATG 58.070 45.455 0.00 0.00 0.00 2.90
240 241 3.055530 CCTCTGTTGCAAGGAGTGTAGAT 60.056 47.826 20.82 0.00 34.35 1.98
241 242 2.300152 CCTCTGTTGCAAGGAGTGTAGA 59.700 50.000 20.82 8.26 34.35 2.59
242 243 2.613977 CCCTCTGTTGCAAGGAGTGTAG 60.614 54.545 20.82 10.43 34.35 2.74
243 244 1.347707 CCCTCTGTTGCAAGGAGTGTA 59.652 52.381 20.82 0.00 34.35 2.90
244 245 0.109342 CCCTCTGTTGCAAGGAGTGT 59.891 55.000 20.82 0.00 34.35 3.55
245 246 0.109342 ACCCTCTGTTGCAAGGAGTG 59.891 55.000 20.82 15.31 34.35 3.51
246 247 1.625818 CTACCCTCTGTTGCAAGGAGT 59.374 52.381 20.82 12.34 34.35 3.85
247 248 1.065854 CCTACCCTCTGTTGCAAGGAG 60.066 57.143 17.59 17.59 34.35 3.69
248 249 0.984230 CCTACCCTCTGTTGCAAGGA 59.016 55.000 0.00 0.08 34.35 3.36
249 250 0.035056 CCCTACCCTCTGTTGCAAGG 60.035 60.000 0.00 0.00 0.00 3.61
250 251 0.984230 TCCCTACCCTCTGTTGCAAG 59.016 55.000 0.00 0.00 0.00 4.01
251 252 0.984230 CTCCCTACCCTCTGTTGCAA 59.016 55.000 0.00 0.00 0.00 4.08
252 253 0.909610 CCTCCCTACCCTCTGTTGCA 60.910 60.000 0.00 0.00 0.00 4.08
253 254 1.908483 CCTCCCTACCCTCTGTTGC 59.092 63.158 0.00 0.00 0.00 4.17
254 255 0.909610 TGCCTCCCTACCCTCTGTTG 60.910 60.000 0.00 0.00 0.00 3.33
255 256 0.178873 TTGCCTCCCTACCCTCTGTT 60.179 55.000 0.00 0.00 0.00 3.16
256 257 0.178873 TTTGCCTCCCTACCCTCTGT 60.179 55.000 0.00 0.00 0.00 3.41
257 258 0.543749 CTTTGCCTCCCTACCCTCTG 59.456 60.000 0.00 0.00 0.00 3.35
258 259 0.417841 TCTTTGCCTCCCTACCCTCT 59.582 55.000 0.00 0.00 0.00 3.69
259 260 1.210722 CTTCTTTGCCTCCCTACCCTC 59.789 57.143 0.00 0.00 0.00 4.30
260 261 1.290134 CTTCTTTGCCTCCCTACCCT 58.710 55.000 0.00 0.00 0.00 4.34
261 262 0.394488 GCTTCTTTGCCTCCCTACCC 60.394 60.000 0.00 0.00 0.00 3.69
262 263 0.328258 TGCTTCTTTGCCTCCCTACC 59.672 55.000 0.00 0.00 0.00 3.18
263 264 1.813178 GTTGCTTCTTTGCCTCCCTAC 59.187 52.381 0.00 0.00 0.00 3.18
264 265 1.423541 TGTTGCTTCTTTGCCTCCCTA 59.576 47.619 0.00 0.00 0.00 3.53
265 266 0.185901 TGTTGCTTCTTTGCCTCCCT 59.814 50.000 0.00 0.00 0.00 4.20
266 267 1.039856 TTGTTGCTTCTTTGCCTCCC 58.960 50.000 0.00 0.00 0.00 4.30
267 268 2.362077 TCTTTGTTGCTTCTTTGCCTCC 59.638 45.455 0.00 0.00 0.00 4.30
268 269 3.715628 TCTTTGTTGCTTCTTTGCCTC 57.284 42.857 0.00 0.00 0.00 4.70
269 270 4.160252 TCTTTCTTTGTTGCTTCTTTGCCT 59.840 37.500 0.00 0.00 0.00 4.75
270 271 4.268644 GTCTTTCTTTGTTGCTTCTTTGCC 59.731 41.667 0.00 0.00 0.00 4.52
271 272 4.027377 CGTCTTTCTTTGTTGCTTCTTTGC 60.027 41.667 0.00 0.00 0.00 3.68
272 273 4.500477 CCGTCTTTCTTTGTTGCTTCTTTG 59.500 41.667 0.00 0.00 0.00 2.77
273 274 4.440112 CCCGTCTTTCTTTGTTGCTTCTTT 60.440 41.667 0.00 0.00 0.00 2.52
274 275 3.066760 CCCGTCTTTCTTTGTTGCTTCTT 59.933 43.478 0.00 0.00 0.00 2.52
275 276 2.618709 CCCGTCTTTCTTTGTTGCTTCT 59.381 45.455 0.00 0.00 0.00 2.85
276 277 2.287608 CCCCGTCTTTCTTTGTTGCTTC 60.288 50.000 0.00 0.00 0.00 3.86
277 278 1.681264 CCCCGTCTTTCTTTGTTGCTT 59.319 47.619 0.00 0.00 0.00 3.91
278 279 1.318576 CCCCGTCTTTCTTTGTTGCT 58.681 50.000 0.00 0.00 0.00 3.91
279 280 0.313987 CCCCCGTCTTTCTTTGTTGC 59.686 55.000 0.00 0.00 0.00 4.17
280 281 0.313987 GCCCCCGTCTTTCTTTGTTG 59.686 55.000 0.00 0.00 0.00 3.33
281 282 1.170290 CGCCCCCGTCTTTCTTTGTT 61.170 55.000 0.00 0.00 0.00 2.83
282 283 1.599797 CGCCCCCGTCTTTCTTTGT 60.600 57.895 0.00 0.00 0.00 2.83
299 300 0.179200 GGCCGTTTTCTATGTGTGCG 60.179 55.000 0.00 0.00 0.00 5.34
300 301 0.179200 CGGCCGTTTTCTATGTGTGC 60.179 55.000 19.50 0.00 0.00 4.57
301 302 0.446222 CCGGCCGTTTTCTATGTGTG 59.554 55.000 26.12 0.00 0.00 3.82
302 303 1.303091 GCCGGCCGTTTTCTATGTGT 61.303 55.000 26.12 0.00 0.00 3.72
303 304 1.427819 GCCGGCCGTTTTCTATGTG 59.572 57.895 26.12 5.27 0.00 3.21
304 305 1.747745 GGCCGGCCGTTTTCTATGT 60.748 57.895 33.60 0.00 0.00 2.29
305 306 3.107447 GGCCGGCCGTTTTCTATG 58.893 61.111 33.60 6.93 0.00 2.23
328 329 0.251077 CTTGCTCTTGCTCTTGGGGT 60.251 55.000 0.00 0.00 40.48 4.95
333 334 4.940654 GGTTTAGATCTTGCTCTTGCTCTT 59.059 41.667 0.00 0.00 40.48 2.85
334 335 4.224818 AGGTTTAGATCTTGCTCTTGCTCT 59.775 41.667 0.00 0.00 40.48 4.09
336 337 4.566426 AGGTTTAGATCTTGCTCTTGCT 57.434 40.909 0.00 0.00 40.48 3.91
337 338 4.095632 GGAAGGTTTAGATCTTGCTCTTGC 59.904 45.833 0.00 2.71 40.20 4.01
338 339 4.331168 CGGAAGGTTTAGATCTTGCTCTTG 59.669 45.833 0.00 0.00 30.66 3.02
339 340 4.508662 CGGAAGGTTTAGATCTTGCTCTT 58.491 43.478 0.00 0.63 30.66 2.85
340 341 4.130286 CGGAAGGTTTAGATCTTGCTCT 57.870 45.455 0.00 0.00 30.66 4.09
398 399 3.841372 GCGTTGAACATTCGCTGCTATAC 60.841 47.826 13.82 0.00 45.29 1.47
644 687 2.978010 CAGTGGTGGGTTCGGCAC 60.978 66.667 0.00 0.00 0.00 5.01
645 688 3.484806 ACAGTGGTGGGTTCGGCA 61.485 61.111 0.00 0.00 0.00 5.69
646 689 2.978010 CACAGTGGTGGGTTCGGC 60.978 66.667 0.00 0.00 41.45 5.54
648 691 2.978010 GGCACAGTGGTGGGTTCG 60.978 66.667 1.84 0.00 45.38 3.95
649 692 1.898574 CAGGCACAGTGGTGGGTTC 60.899 63.158 1.84 0.00 45.38 3.62
650 693 2.195683 CAGGCACAGTGGTGGGTT 59.804 61.111 1.84 0.00 45.38 4.11
651 694 3.096495 ACAGGCACAGTGGTGGGT 61.096 61.111 1.84 0.00 45.38 4.51
652 695 2.595463 CACAGGCACAGTGGTGGG 60.595 66.667 1.84 0.00 45.38 4.61
653 696 3.289834 GCACAGGCACAGTGGTGG 61.290 66.667 1.84 0.00 46.25 4.61
654 697 3.653009 CGCACAGGCACAGTGGTG 61.653 66.667 1.84 3.43 46.25 4.17
723 769 1.745320 TATTTCTCTCTCGCCCGCCC 61.745 60.000 0.00 0.00 0.00 6.13
724 770 0.104304 TTATTTCTCTCTCGCCCGCC 59.896 55.000 0.00 0.00 0.00 6.13
725 771 1.935933 TTTATTTCTCTCTCGCCCGC 58.064 50.000 0.00 0.00 0.00 6.13
726 772 4.150804 GCTATTTTATTTCTCTCTCGCCCG 59.849 45.833 0.00 0.00 0.00 6.13
727 773 5.050023 GTGCTATTTTATTTCTCTCTCGCCC 60.050 44.000 0.00 0.00 0.00 6.13
728 774 5.755861 AGTGCTATTTTATTTCTCTCTCGCC 59.244 40.000 0.00 0.00 0.00 5.54
729 775 6.836577 AGTGCTATTTTATTTCTCTCTCGC 57.163 37.500 0.00 0.00 0.00 5.03
730 776 9.737427 TTCTAGTGCTATTTTATTTCTCTCTCG 57.263 33.333 0.00 0.00 0.00 4.04
740 786 8.936864 GGTCGCATTATTCTAGTGCTATTTTAT 58.063 33.333 1.38 0.00 39.02 1.40
741 787 7.386848 GGGTCGCATTATTCTAGTGCTATTTTA 59.613 37.037 1.38 0.00 39.02 1.52
812 863 4.364409 GTGTCCGCCGCGTTGTTC 62.364 66.667 12.58 0.00 0.00 3.18
826 877 4.347453 GACGGGCGTGGTACGTGT 62.347 66.667 0.00 0.23 44.73 4.49
865 927 1.953100 ATGGATGGAAAGGGCAGGGG 61.953 60.000 0.00 0.00 0.00 4.79
870 932 0.178978 GAGGGATGGATGGAAAGGGC 60.179 60.000 0.00 0.00 0.00 5.19
871 933 0.480252 GGAGGGATGGATGGAAAGGG 59.520 60.000 0.00 0.00 0.00 3.95
874 936 0.546122 CACGGAGGGATGGATGGAAA 59.454 55.000 0.00 0.00 0.00 3.13
875 937 1.344953 CCACGGAGGGATGGATGGAA 61.345 60.000 0.00 0.00 38.34 3.53
925 987 4.133373 TACGGGTCGGGAGGGGAG 62.133 72.222 0.00 0.00 0.00 4.30
926 988 4.447342 GTACGGGTCGGGAGGGGA 62.447 72.222 0.00 0.00 0.00 4.81
965 1027 3.922640 CCTAGCTGGGAGGCGAGC 61.923 72.222 11.42 0.00 34.43 5.03
995 1060 3.426309 ATCCCCCTCCGCATTGCAG 62.426 63.158 9.69 0.00 0.00 4.41
1401 1643 3.827898 GCCCTGTCCTCCTCGTCG 61.828 72.222 0.00 0.00 0.00 5.12
1407 1649 2.352805 CACTTGGCCCTGTCCTCC 59.647 66.667 0.00 0.00 0.00 4.30
1506 1748 1.065928 GGCGACGGTGATGTAGGAG 59.934 63.158 0.00 0.00 0.00 3.69
1553 1795 4.162690 GCGCGATCTTGGGGTCCT 62.163 66.667 12.10 0.00 0.00 3.85
1605 1847 0.381089 GCAGCTCCATCATGAACTGC 59.619 55.000 16.81 16.81 43.09 4.40
1710 1952 1.872952 CAGGTGTTTTGCTCGATGACA 59.127 47.619 0.00 0.00 0.00 3.58
1755 1997 2.664185 CAGCCCTCGCATCGGATG 60.664 66.667 13.63 13.63 37.52 3.51
1823 2066 4.572985 TTTGATCAGTCAGGCAACAAAG 57.427 40.909 0.00 0.00 35.39 2.77
1966 2212 2.231478 GGACTCGTTGGACTGATCTTCA 59.769 50.000 0.00 0.00 0.00 3.02
2211 2457 1.978617 CCACAGTGCCCCACCATTC 60.979 63.158 0.00 0.00 34.49 2.67
2345 2591 1.723870 CGGTGCAAAGCTAGGATGC 59.276 57.895 0.00 6.73 40.45 3.91
2411 2657 3.181465 TGAATATCTCGGCTGGTTCTTCC 60.181 47.826 0.00 0.00 0.00 3.46
2489 2735 1.748122 CTGGGCAGCAGACATCCAC 60.748 63.158 0.00 0.00 0.00 4.02
2565 2812 7.093992 CAGCTAGGAATTACTAAGCCATAGAC 58.906 42.308 12.73 0.00 35.47 2.59
2605 2852 3.604875 ATTCAAAAGCTCAAGCCCATG 57.395 42.857 0.00 0.00 43.38 3.66
2812 3059 4.210120 GTGGCAAATAGTCAATAGAGCGAG 59.790 45.833 0.00 0.00 30.62 5.03
2818 3065 6.698008 TCATTGGTGGCAAATAGTCAATAG 57.302 37.500 0.00 0.00 30.62 1.73
2862 3109 2.533266 ATATTTCGCAGAGACGGCAT 57.467 45.000 0.00 0.00 38.43 4.40
3045 3292 4.389374 AGGACAGTCGTTGTGAAATCAAT 58.611 39.130 0.00 0.00 41.05 2.57
3200 3447 6.892658 TCTTTTATAGCAACTTTGGCTCAA 57.107 33.333 0.00 0.00 42.62 3.02
3231 3478 2.565834 TGTCCTACTGGCAGGAACTAAC 59.434 50.000 20.34 9.40 46.31 2.34
3315 3562 3.636300 TGAGGCAGCACACAATAACTTTT 59.364 39.130 0.00 0.00 0.00 2.27
3396 3643 8.202811 AGACGTGTCTAGTATTCAGATAGTACA 58.797 37.037 0.00 0.00 38.35 2.90
3459 3706 4.273969 CGTACACTGCTTTTGGTTAAAGGA 59.726 41.667 0.00 0.00 42.89 3.36
3674 3926 7.744087 TTGTTGACTAATTTCTGTAGCATGT 57.256 32.000 0.00 0.00 0.00 3.21
3702 3954 3.843619 TCTGGTTCATTCTGGTGGTATGA 59.156 43.478 0.00 0.00 0.00 2.15
3824 4076 7.781324 TTTTATGCCCAGATTCTCTTCTTTT 57.219 32.000 0.00 0.00 0.00 2.27
3854 4106 3.635373 AGAAACGAACTAGTGGTCTGTCA 59.365 43.478 0.00 0.00 0.00 3.58
4157 4412 4.069304 CCCGATCAGTAACACCAAAAAGA 58.931 43.478 0.00 0.00 0.00 2.52
4177 4432 2.774687 TCTCTAAACAAAACTCGGCCC 58.225 47.619 0.00 0.00 0.00 5.80
4178 4433 4.000988 TCATCTCTAAACAAAACTCGGCC 58.999 43.478 0.00 0.00 0.00 6.13
4179 4434 4.451096 TGTCATCTCTAAACAAAACTCGGC 59.549 41.667 0.00 0.00 0.00 5.54
4181 4436 5.388475 CCGTGTCATCTCTAAACAAAACTCG 60.388 44.000 0.00 0.00 0.00 4.18
4182 4437 5.107065 CCCGTGTCATCTCTAAACAAAACTC 60.107 44.000 0.00 0.00 0.00 3.01
4184 4439 4.612939 GCCCGTGTCATCTCTAAACAAAAC 60.613 45.833 0.00 0.00 0.00 2.43
4185 4440 3.500680 GCCCGTGTCATCTCTAAACAAAA 59.499 43.478 0.00 0.00 0.00 2.44
4187 4442 2.614481 GGCCCGTGTCATCTCTAAACAA 60.614 50.000 0.00 0.00 0.00 2.83
4188 4443 1.066430 GGCCCGTGTCATCTCTAAACA 60.066 52.381 0.00 0.00 0.00 2.83
4189 4444 1.653151 GGCCCGTGTCATCTCTAAAC 58.347 55.000 0.00 0.00 0.00 2.01
4190 4445 0.174845 CGGCCCGTGTCATCTCTAAA 59.825 55.000 0.00 0.00 0.00 1.85
4257 4571 2.034048 GCCGATCCAGAAGAGTCCCC 62.034 65.000 0.00 0.00 0.00 4.81
4377 4695 7.039504 ACAATCAGCCACTCAAAAAGTAATGAT 60.040 33.333 0.00 0.00 36.07 2.45
4378 4696 6.265196 ACAATCAGCCACTCAAAAAGTAATGA 59.735 34.615 0.00 0.00 36.07 2.57
4379 4697 6.364165 CACAATCAGCCACTCAAAAAGTAATG 59.636 38.462 0.00 0.00 36.07 1.90
4417 4735 1.702401 TCTGTGCCTGATGGGTTGTAA 59.298 47.619 0.00 0.00 37.43 2.41
4418 4736 1.357137 TCTGTGCCTGATGGGTTGTA 58.643 50.000 0.00 0.00 37.43 2.41
4560 4883 3.677148 GCTCCATGTTCATCGACAGAGAA 60.677 47.826 0.00 0.00 32.19 2.87
4567 4890 2.768253 AACAGCTCCATGTTCATCGA 57.232 45.000 0.00 0.00 39.13 3.59
4580 4903 0.179045 AGTGCCGACAGAAAACAGCT 60.179 50.000 0.00 0.00 0.00 4.24
4581 4904 1.461127 CTAGTGCCGACAGAAAACAGC 59.539 52.381 0.00 0.00 0.00 4.40
4684 5007 4.878397 CAGTAAAATGATCTGGACCACTCC 59.122 45.833 0.00 0.00 37.04 3.85
4690 5013 5.867716 ACGTGTACAGTAAAATGATCTGGAC 59.132 40.000 0.00 0.00 41.72 4.02
4714 5038 2.016318 CTGTTGCAGTGTTGAACAGGA 58.984 47.619 17.41 0.00 38.00 3.86
4758 5086 0.672342 ACGGTACATACCTCGGATGC 59.328 55.000 6.52 0.00 44.25 3.91
4760 5088 2.157738 GCTACGGTACATACCTCGGAT 58.842 52.381 6.52 0.00 44.25 4.18
4761 5089 1.134128 TGCTACGGTACATACCTCGGA 60.134 52.381 6.52 0.00 44.25 4.55
4762 5090 1.311859 TGCTACGGTACATACCTCGG 58.688 55.000 6.52 0.00 44.25 4.63
4763 5091 2.292569 ACATGCTACGGTACATACCTCG 59.707 50.000 6.52 0.00 44.25 4.63
4765 5093 2.626743 GGACATGCTACGGTACATACCT 59.373 50.000 6.52 0.00 44.25 3.08
4766 5094 2.626743 AGGACATGCTACGGTACATACC 59.373 50.000 0.00 0.00 42.98 2.73
4767 5095 4.317671 AAGGACATGCTACGGTACATAC 57.682 45.455 0.00 0.00 0.00 2.39
4768 5096 6.008331 AGATAAGGACATGCTACGGTACATA 58.992 40.000 0.00 0.00 0.00 2.29
4769 5097 4.833380 AGATAAGGACATGCTACGGTACAT 59.167 41.667 0.00 0.00 0.00 2.29
4770 5098 4.037565 CAGATAAGGACATGCTACGGTACA 59.962 45.833 0.00 0.00 0.00 2.90
4771 5099 4.277672 TCAGATAAGGACATGCTACGGTAC 59.722 45.833 0.00 0.00 0.00 3.34
4773 5101 3.296854 TCAGATAAGGACATGCTACGGT 58.703 45.455 0.00 0.00 0.00 4.83
4774 5102 4.322080 TTCAGATAAGGACATGCTACGG 57.678 45.455 0.00 0.00 0.00 4.02
4775 5103 6.851222 AATTTCAGATAAGGACATGCTACG 57.149 37.500 0.00 0.00 0.00 3.51
4803 5131 2.961741 CTGGCTTGCCTCTCTATGAGTA 59.038 50.000 13.18 0.00 41.11 2.59
4821 5149 1.066002 CAATATTGGCCGACTTGCTGG 59.934 52.381 7.62 0.00 0.00 4.85
4822 5150 2.016318 TCAATATTGGCCGACTTGCTG 58.984 47.619 15.36 0.00 0.00 4.41
4823 5151 2.418368 TCAATATTGGCCGACTTGCT 57.582 45.000 15.36 0.00 0.00 3.91
4824 5152 3.715628 ATTCAATATTGGCCGACTTGC 57.284 42.857 15.36 0.00 0.00 4.01
4867 5204 3.935993 TGCTCTAGGTCAGCAAACC 57.064 52.632 2.27 0.00 44.02 3.27
4871 5208 0.686789 TTGCTTGCTCTAGGTCAGCA 59.313 50.000 0.64 0.64 45.32 4.41
4907 5244 0.107897 TGTTGCGATCGGGCACTTAT 60.108 50.000 18.30 0.00 43.82 1.73
4931 5270 2.225019 GCCAGAATTATCGTGCTGATGG 59.775 50.000 0.00 0.00 37.99 3.51
4933 5272 3.198409 TGCCAGAATTATCGTGCTGAT 57.802 42.857 0.00 0.00 41.30 2.90
4953 5292 0.745128 TGCCAGACGTCACGGTTTTT 60.745 50.000 19.50 0.00 0.00 1.94
5027 5366 4.384537 CCTCTCTCCAACTGCCAAATATGA 60.385 45.833 0.00 0.00 0.00 2.15
5044 5383 1.049402 GCGCCCTAAATACCCTCTCT 58.951 55.000 0.00 0.00 0.00 3.10
5065 5404 4.858692 CGCCAAACCATTTTCAAGATGTAG 59.141 41.667 0.00 0.00 0.00 2.74
5073 5412 0.039617 CTCGCGCCAAACCATTTTCA 60.040 50.000 0.00 0.00 0.00 2.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.