Multiple sequence alignment - TraesCS5D01G461900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G461900 chr5D 100.000 3335 0 0 1 3335 505819741 505816407 0.000000e+00 6159.0
1 TraesCS5D01G461900 chr5D 85.714 77 7 3 1269 1343 350676205 350676279 9.920000e-11 78.7
2 TraesCS5D01G461900 chr5D 81.443 97 9 7 1273 1363 350703995 350704088 1.660000e-08 71.3
3 TraesCS5D01G461900 chr5B 94.247 1686 86 5 733 2416 635809142 635807466 0.000000e+00 2566.0
4 TraesCS5D01G461900 chr5B 86.162 766 86 13 2 749 635810135 635809372 0.000000e+00 809.0
5 TraesCS5D01G461900 chr5B 84.858 317 29 10 2702 3007 635806277 635805969 5.410000e-78 302.0
6 TraesCS5D01G461900 chr5A 94.803 1347 70 0 991 2337 633268231 633269577 0.000000e+00 2100.0
7 TraesCS5D01G461900 chr5A 90.809 272 22 1 1294 1565 576265076 576264808 8.800000e-96 361.0
8 TraesCS5D01G461900 chr5A 82.591 247 26 11 750 983 633267950 633268192 5.640000e-48 202.0
9 TraesCS5D01G461900 chr5A 85.714 77 7 3 1269 1343 451138375 451138449 9.920000e-11 78.7
10 TraesCS5D01G461900 chr1D 88.605 509 55 3 6 512 338038351 338037844 1.700000e-172 616.0
11 TraesCS5D01G461900 chr1D 92.708 96 5 1 2622 2715 408530648 408530743 1.610000e-28 137.0
12 TraesCS5D01G461900 chr1D 93.478 92 5 1 2621 2712 393171925 393172015 5.800000e-28 135.0
13 TraesCS5D01G461900 chr6A 87.814 517 58 5 1 514 23590065 23590579 4.760000e-168 601.0
14 TraesCS5D01G461900 chr6A 90.816 98 9 0 2620 2717 414876315 414876218 7.510000e-27 132.0
15 TraesCS5D01G461900 chr6A 91.489 94 7 1 2623 2715 547593784 547593877 9.710000e-26 128.0
16 TraesCS5D01G461900 chr6B 87.311 528 60 4 1 523 154404724 154404199 6.160000e-167 597.0
17 TraesCS5D01G461900 chr2A 88.288 444 49 3 72 514 753612950 753612509 2.280000e-146 529.0
18 TraesCS5D01G461900 chr2B 87.146 459 53 4 72 526 763837907 763837451 1.770000e-142 516.0
19 TraesCS5D01G461900 chr2B 87.838 74 5 4 1273 1344 247560223 247560294 2.130000e-12 84.2
20 TraesCS5D01G461900 chr6D 95.604 91 4 0 2621 2711 25851116 25851206 2.680000e-31 147.0
21 TraesCS5D01G461900 chr3D 95.349 86 4 0 2623 2708 560556236 560556321 1.610000e-28 137.0
22 TraesCS5D01G461900 chr3B 91.667 96 8 0 2619 2714 818896677 818896582 2.090000e-27 134.0
23 TraesCS5D01G461900 chr7D 89.899 99 10 0 2617 2715 24934876 24934974 9.710000e-26 128.0
24 TraesCS5D01G461900 chr7B 87.273 110 12 2 2615 2723 648376764 648376872 1.260000e-24 124.0
25 TraesCS5D01G461900 chr2D 87.671 73 7 2 1273 1344 190437364 190437435 2.130000e-12 84.2
26 TraesCS5D01G461900 chr2D 87.324 71 9 0 1273 1343 190369918 190369988 7.670000e-12 82.4
27 TraesCS5D01G461900 chr1A 89.286 56 4 2 471 524 5239998 5240053 5.970000e-08 69.4
28 TraesCS5D01G461900 chr1A 95.349 43 2 0 471 513 5325786 5325828 5.970000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G461900 chr5D 505816407 505819741 3334 True 6159.000000 6159 100.000000 1 3335 1 chr5D.!!$R1 3334
1 TraesCS5D01G461900 chr5B 635805969 635810135 4166 True 1225.666667 2566 88.422333 2 3007 3 chr5B.!!$R1 3005
2 TraesCS5D01G461900 chr5A 633267950 633269577 1627 False 1151.000000 2100 88.697000 750 2337 2 chr5A.!!$F2 1587
3 TraesCS5D01G461900 chr1D 338037844 338038351 507 True 616.000000 616 88.605000 6 512 1 chr1D.!!$R1 506
4 TraesCS5D01G461900 chr6A 23590065 23590579 514 False 601.000000 601 87.814000 1 514 1 chr6A.!!$F1 513
5 TraesCS5D01G461900 chr6B 154404199 154404724 525 True 597.000000 597 87.311000 1 523 1 chr6B.!!$R1 522

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
613 626 0.108233 TAATGGACACGCCCGGTTAC 60.108 55.0 0.0 0.0 34.97 2.5 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2467 2802 0.035881 ATATGTGCGCTGCTAGGCAT 59.964 50.0 9.73 4.49 41.83 4.4 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.746375 CCCGAGGTATGGCAGCCTT 61.746 63.158 14.15 9.31 34.81 4.35
67 68 1.000274 GTGGATGCCAGTTTTGTGGAC 60.000 52.381 0.00 0.00 40.44 4.02
98 100 0.548989 TGCTAGTGTGGGGTTGTTGT 59.451 50.000 0.00 0.00 0.00 3.32
111 113 2.289819 GGTTGTTGTCAGGGATTCGGTA 60.290 50.000 0.00 0.00 0.00 4.02
118 120 0.177141 CAGGGATTCGGTAGGCGAAA 59.823 55.000 0.00 0.00 0.00 3.46
154 156 7.403312 TCCTGGGATTATAATTGTTTGTGTG 57.597 36.000 0.00 0.00 0.00 3.82
170 172 0.534877 TGTGCCAGCGTTGATGAAGT 60.535 50.000 0.00 0.00 0.00 3.01
247 251 1.314730 ATTTTGGAAACGGACTGCGT 58.685 45.000 0.00 0.00 0.00 5.24
297 301 9.486497 GTGATAAGCTTGATAGATCATTTCTCA 57.514 33.333 9.86 0.00 36.56 3.27
322 326 5.960811 TGGATCTGAAGAAGGAAGTGATAGT 59.039 40.000 0.00 0.00 0.00 2.12
346 350 5.476599 TCATCACCAAGTTCCTACCAAATTG 59.523 40.000 0.00 0.00 32.36 2.32
356 360 2.755103 CCTACCAAATTGGAAGCTGGTC 59.245 50.000 20.25 0.00 40.96 4.02
384 388 5.565509 TCAATAGACAAGCCAATGTGGTAA 58.434 37.500 0.00 0.00 40.46 2.85
448 452 7.885399 AGATGGTTTGCTCTGTAATAGTTTTCT 59.115 33.333 0.00 0.00 0.00 2.52
466 470 3.737172 GCCTTGCGTGGCGAATGT 61.737 61.111 4.01 0.00 43.74 2.71
467 471 2.480555 CCTTGCGTGGCGAATGTC 59.519 61.111 0.00 0.00 0.00 3.06
541 554 1.651987 AATACGTGCAAGTGATCGGG 58.348 50.000 15.96 0.00 0.00 5.14
544 557 2.108514 CGTGCAAGTGATCGGGCAT 61.109 57.895 0.00 0.00 38.68 4.40
561 574 4.763793 CGGGCATATGAGGAAGAAAATGAT 59.236 41.667 6.97 0.00 0.00 2.45
566 579 7.663081 GGCATATGAGGAAGAAAATGATGAGTA 59.337 37.037 6.97 0.00 0.00 2.59
572 585 5.826737 AGGAAGAAAATGATGAGTATGCCTG 59.173 40.000 0.00 0.00 0.00 4.85
576 589 1.875009 ATGATGAGTATGCCTGTGCG 58.125 50.000 0.00 0.00 41.78 5.34
581 594 2.890474 GTATGCCTGTGCGGACGG 60.890 66.667 9.23 9.23 41.78 4.79
586 599 2.047274 CCTGTGCGGACGGACAAT 60.047 61.111 18.51 0.00 45.33 2.71
587 600 1.216977 CCTGTGCGGACGGACAATA 59.783 57.895 18.51 0.00 45.33 1.90
588 601 0.806102 CCTGTGCGGACGGACAATAG 60.806 60.000 18.51 8.50 45.33 1.73
592 605 2.728435 GCGGACGGACAATAGGGGT 61.728 63.158 0.00 0.00 0.00 4.95
593 606 1.902556 CGGACGGACAATAGGGGTT 59.097 57.895 0.00 0.00 0.00 4.11
594 607 0.251073 CGGACGGACAATAGGGGTTT 59.749 55.000 0.00 0.00 0.00 3.27
595 608 1.481772 CGGACGGACAATAGGGGTTTA 59.518 52.381 0.00 0.00 0.00 2.01
597 610 3.432608 CGGACGGACAATAGGGGTTTAAT 60.433 47.826 0.00 0.00 0.00 1.40
598 611 3.881089 GGACGGACAATAGGGGTTTAATG 59.119 47.826 0.00 0.00 0.00 1.90
599 612 3.881089 GACGGACAATAGGGGTTTAATGG 59.119 47.826 0.00 0.00 0.00 3.16
600 613 3.524380 ACGGACAATAGGGGTTTAATGGA 59.476 43.478 0.00 0.00 0.00 3.41
601 614 3.881089 CGGACAATAGGGGTTTAATGGAC 59.119 47.826 0.00 0.00 0.00 4.02
602 615 4.626771 CGGACAATAGGGGTTTAATGGACA 60.627 45.833 0.00 0.00 0.00 4.02
603 616 4.643334 GGACAATAGGGGTTTAATGGACAC 59.357 45.833 0.00 0.00 0.00 3.67
604 617 4.266714 ACAATAGGGGTTTAATGGACACG 58.733 43.478 0.00 0.00 0.00 4.49
605 618 2.406596 TAGGGGTTTAATGGACACGC 57.593 50.000 0.00 0.00 0.00 5.34
607 620 1.317431 GGGGTTTAATGGACACGCCC 61.317 60.000 0.02 0.00 37.52 6.13
608 621 1.650314 GGGTTTAATGGACACGCCCG 61.650 60.000 0.00 0.00 34.97 6.13
609 622 1.650314 GGTTTAATGGACACGCCCGG 61.650 60.000 0.00 0.00 34.97 5.73
610 623 0.956902 GTTTAATGGACACGCCCGGT 60.957 55.000 0.00 0.00 34.97 5.28
611 624 0.250814 TTTAATGGACACGCCCGGTT 60.251 50.000 0.00 0.00 34.97 4.44
612 625 0.612229 TTAATGGACACGCCCGGTTA 59.388 50.000 0.00 0.00 34.97 2.85
613 626 0.108233 TAATGGACACGCCCGGTTAC 60.108 55.000 0.00 0.00 34.97 2.50
630 654 1.663379 TACTGACCGGGCATGTCGAG 61.663 60.000 12.52 0.00 35.46 4.04
636 660 4.530857 GGGCATGTCGAGGGGTCG 62.531 72.222 0.00 0.00 0.00 4.79
641 665 1.290203 CATGTCGAGGGGTCGAATTG 58.710 55.000 0.00 0.00 44.12 2.32
648 672 1.001393 GGGGTCGAATTGGAGGCAA 60.001 57.895 0.00 0.00 0.00 4.52
649 673 1.032114 GGGGTCGAATTGGAGGCAAG 61.032 60.000 0.00 0.00 0.00 4.01
657 681 3.685550 CGAATTGGAGGCAAGGGATACTT 60.686 47.826 0.00 0.00 41.00 2.24
664 688 4.900054 GGAGGCAAGGGATACTTCTAACTA 59.100 45.833 0.00 0.00 37.29 2.24
676 700 9.444600 GGATACTTCTAACTATTCAACCACAAA 57.555 33.333 0.00 0.00 0.00 2.83
698 722 1.876799 TGGTTCGCATACTTTGTGTGG 59.123 47.619 0.00 0.00 37.14 4.17
702 726 1.876799 TCGCATACTTTGTGTGGGTTG 59.123 47.619 10.19 0.00 38.36 3.77
746 1016 4.848841 CGTGCGCTCATTATGTTTTGTTAA 59.151 37.500 9.73 0.00 0.00 2.01
770 1040 7.282332 AGCTCAATAGAAATGCCCTTTTATC 57.718 36.000 0.00 0.00 0.00 1.75
1013 1329 2.329339 GAGAATGGCGCGCATTCC 59.671 61.111 32.87 25.39 39.24 3.01
1014 1330 2.438254 AGAATGGCGCGCATTCCA 60.438 55.556 32.87 24.46 39.24 3.53
1045 1361 2.263852 CGCTTCTCTGCTGCCTCA 59.736 61.111 0.00 0.00 0.00 3.86
1212 1528 3.190878 GGCAAAGGCGGAGACATG 58.809 61.111 0.00 0.00 39.87 3.21
1221 1537 2.163390 CGGAGACATGTCAGCAGCG 61.163 63.158 27.02 13.86 0.00 5.18
1481 1797 4.473643 CAAGAACTGCACCGGGAA 57.526 55.556 6.32 0.00 0.00 3.97
1485 1801 1.070786 GAACTGCACCGGGAACAGA 59.929 57.895 22.67 0.00 35.38 3.41
1503 1819 1.135139 AGATGCATGTACGACGAGCTT 59.865 47.619 2.46 0.00 0.00 3.74
1557 1873 1.215647 CGAGACCTTCACCTTCGGG 59.784 63.158 0.00 0.00 41.87 5.14
1783 2099 1.204062 CTGCGCAAGTACAACACGG 59.796 57.895 13.05 0.00 41.68 4.94
1788 2104 2.667199 AAGTACAACACGGCGGGC 60.667 61.111 10.14 0.00 0.00 6.13
1830 2146 3.358076 GACGAACCCGGCAGAGGAG 62.358 68.421 0.00 0.00 44.91 3.69
1947 2263 2.648102 GGCACGATCGTCGACTCG 60.648 66.667 19.84 21.43 43.74 4.18
1997 2313 2.087009 CGTTCGAGGCCGTGAAGAC 61.087 63.158 12.29 3.09 37.05 3.01
2031 2347 2.047179 GTGAGCCTCCCGGTGTTC 60.047 66.667 0.00 0.00 0.00 3.18
2067 2383 2.126071 TACGAGCTGTGCTTCGCC 60.126 61.111 0.00 0.00 39.88 5.54
2175 2491 0.984995 ACAACTACTTCCAGGAGCCC 59.015 55.000 0.00 0.00 0.00 5.19
2178 2494 0.413832 ACTACTTCCAGGAGCCCAGA 59.586 55.000 0.00 0.00 0.00 3.86
2331 2647 1.815613 CCAACCAAATGCCACGACATA 59.184 47.619 0.00 0.00 0.00 2.29
2337 2653 3.364267 CCAAATGCCACGACATATGATCG 60.364 47.826 19.41 19.41 45.17 3.69
2355 2671 0.110238 CGCAATTGCAAGCACGTACT 60.110 50.000 28.77 0.00 42.21 2.73
2356 2672 1.662876 CGCAATTGCAAGCACGTACTT 60.663 47.619 28.77 0.00 42.21 2.24
2357 2673 2.412195 CGCAATTGCAAGCACGTACTTA 60.412 45.455 28.77 0.00 42.21 2.24
2358 2674 2.908626 GCAATTGCAAGCACGTACTTAC 59.091 45.455 25.36 0.00 41.59 2.34
2371 2687 6.307318 AGCACGTACTTACAATAACTCTTTCG 59.693 38.462 0.00 0.00 0.00 3.46
2377 2693 9.099820 GTACTTACAATAACTCTTTCGCAAAAC 57.900 33.333 0.00 0.00 0.00 2.43
2393 2709 3.716918 GCAAAACGAAAATTGGAAAACGC 59.283 39.130 0.00 0.00 0.00 4.84
2394 2710 3.827281 AAACGAAAATTGGAAAACGCG 57.173 38.095 3.53 3.53 0.00 6.01
2395 2711 1.125270 ACGAAAATTGGAAAACGCGC 58.875 45.000 5.73 0.00 0.00 6.86
2396 2712 0.088858 CGAAAATTGGAAAACGCGCG 59.911 50.000 30.96 30.96 0.00 6.86
2397 2713 1.400550 GAAAATTGGAAAACGCGCGA 58.599 45.000 39.36 13.09 0.00 5.87
2416 2732 4.554134 CGCGACGAGGATAATCTTTGACTA 60.554 45.833 0.00 0.00 0.00 2.59
2418 2734 5.343593 GCGACGAGGATAATCTTTGACTATG 59.656 44.000 0.00 0.00 0.00 2.23
2419 2735 5.343593 CGACGAGGATAATCTTTGACTATGC 59.656 44.000 0.00 0.00 0.00 3.14
2421 2737 6.451393 ACGAGGATAATCTTTGACTATGCTC 58.549 40.000 7.25 7.25 36.42 4.26
2423 2739 6.806249 CGAGGATAATCTTTGACTATGCTCTC 59.194 42.308 12.87 0.00 37.18 3.20
2424 2740 7.522889 CGAGGATAATCTTTGACTATGCTCTCA 60.523 40.741 12.87 0.00 37.18 3.27
2425 2741 8.027524 AGGATAATCTTTGACTATGCTCTCAA 57.972 34.615 0.00 0.00 0.00 3.02
2426 2742 8.658619 AGGATAATCTTTGACTATGCTCTCAAT 58.341 33.333 0.00 0.00 0.00 2.57
2430 2746 6.748333 TCTTTGACTATGCTCTCAATTTGG 57.252 37.500 0.00 0.00 0.00 3.28
2431 2747 6.475504 TCTTTGACTATGCTCTCAATTTGGA 58.524 36.000 0.00 0.00 0.00 3.53
2432 2748 6.596888 TCTTTGACTATGCTCTCAATTTGGAG 59.403 38.462 9.32 9.32 36.21 3.86
2444 2779 8.586570 CTCTCAATTTGGAGCAGTACTTATAG 57.413 38.462 0.00 0.00 34.84 1.31
2454 2789 8.038944 TGGAGCAGTACTTATAGTTTTACTTGG 58.961 37.037 0.00 0.00 0.00 3.61
2477 2812 2.725221 AAAAGGGAGATGCCTAGCAG 57.275 50.000 0.00 0.00 43.65 4.24
2478 2813 0.182299 AAAGGGAGATGCCTAGCAGC 59.818 55.000 0.00 0.00 45.98 5.25
2531 3834 3.071479 TCAAATAAACAGACCAGCGTCC 58.929 45.455 0.00 0.00 40.12 4.79
2543 3846 2.126031 GCGTCCCTCGTCACCTTC 60.126 66.667 0.00 0.00 42.13 3.46
2548 3851 0.324091 TCCCTCGTCACCTTCCCTAC 60.324 60.000 0.00 0.00 0.00 3.18
2549 3852 0.613853 CCCTCGTCACCTTCCCTACA 60.614 60.000 0.00 0.00 0.00 2.74
2573 3876 3.192001 CCACATGATTCTGGAACCAACAG 59.808 47.826 0.00 0.00 37.30 3.16
2583 3886 4.959210 TCTGGAACCAACAGAAATCCAAAA 59.041 37.500 0.00 0.00 41.66 2.44
2585 3888 4.959210 TGGAACCAACAGAAATCCAAAAGA 59.041 37.500 0.00 0.00 37.24 2.52
2590 3893 7.790823 ACCAACAGAAATCCAAAAGAAAATG 57.209 32.000 0.00 0.00 0.00 2.32
2607 3910 9.753669 AAAGAAAATGTCAAATTGAAAAACGAC 57.246 25.926 0.00 0.00 0.00 4.34
2618 3921 3.635331 TGAAAAACGACGAGGAGTAGTG 58.365 45.455 0.00 0.00 38.69 2.74
2619 3922 2.719426 AAAACGACGAGGAGTAGTGG 57.281 50.000 0.00 0.00 38.69 4.00
2620 3923 1.901591 AAACGACGAGGAGTAGTGGA 58.098 50.000 0.00 0.00 38.69 4.02
2621 3924 1.451067 AACGACGAGGAGTAGTGGAG 58.549 55.000 0.00 0.00 38.69 3.86
2622 3925 0.324285 ACGACGAGGAGTAGTGGAGT 59.676 55.000 0.00 0.00 37.31 3.85
2623 3926 1.552337 ACGACGAGGAGTAGTGGAGTA 59.448 52.381 0.00 0.00 37.31 2.59
2624 3927 1.932511 CGACGAGGAGTAGTGGAGTAC 59.067 57.143 0.00 0.00 0.00 2.73
2625 3928 2.418471 CGACGAGGAGTAGTGGAGTACT 60.418 54.545 0.00 0.00 43.56 2.73
2626 3929 3.197265 GACGAGGAGTAGTGGAGTACTC 58.803 54.545 14.87 14.87 45.70 2.59
2638 3941 2.732763 GGAGTACTCCCTCCGTAAACT 58.267 52.381 28.87 0.00 43.94 2.66
2639 3942 3.891049 GGAGTACTCCCTCCGTAAACTA 58.109 50.000 28.87 0.00 43.94 2.24
2640 3943 4.273318 GGAGTACTCCCTCCGTAAACTAA 58.727 47.826 28.87 0.00 43.94 2.24
2641 3944 4.892345 GGAGTACTCCCTCCGTAAACTAAT 59.108 45.833 28.87 0.00 43.94 1.73
2642 3945 6.064717 GGAGTACTCCCTCCGTAAACTAATA 58.935 44.000 28.87 0.00 43.94 0.98
2643 3946 6.718912 GGAGTACTCCCTCCGTAAACTAATAT 59.281 42.308 28.87 0.00 43.94 1.28
2644 3947 7.885399 GGAGTACTCCCTCCGTAAACTAATATA 59.115 40.741 28.87 0.00 43.94 0.86
2645 3948 9.289782 GAGTACTCCCTCCGTAAACTAATATAA 57.710 37.037 12.13 0.00 0.00 0.98
2646 3949 9.646522 AGTACTCCCTCCGTAAACTAATATAAA 57.353 33.333 0.00 0.00 0.00 1.40
2649 3952 8.985922 ACTCCCTCCGTAAACTAATATAAAAGT 58.014 33.333 0.00 0.00 0.00 2.66
2650 3953 9.257651 CTCCCTCCGTAAACTAATATAAAAGTG 57.742 37.037 0.00 0.00 0.00 3.16
2651 3954 8.761689 TCCCTCCGTAAACTAATATAAAAGTGT 58.238 33.333 0.00 0.00 0.00 3.55
2652 3955 9.387257 CCCTCCGTAAACTAATATAAAAGTGTT 57.613 33.333 0.00 0.00 0.00 3.32
2680 3983 8.818057 AGATCACTACTTTAATGATGTAAACGC 58.182 33.333 0.00 0.00 33.21 4.84
2681 3984 8.718102 ATCACTACTTTAATGATGTAAACGCT 57.282 30.769 0.00 0.00 31.84 5.07
2682 3985 8.181487 TCACTACTTTAATGATGTAAACGCTC 57.819 34.615 0.00 0.00 0.00 5.03
2683 3986 8.033038 TCACTACTTTAATGATGTAAACGCTCT 58.967 33.333 0.00 0.00 0.00 4.09
2684 3987 8.656849 CACTACTTTAATGATGTAAACGCTCTT 58.343 33.333 0.00 0.00 0.00 2.85
2685 3988 9.865321 ACTACTTTAATGATGTAAACGCTCTTA 57.135 29.630 0.00 0.00 0.00 2.10
2721 4024 8.919145 AGAGAGGGAGTAGTATTTATCACTTTG 58.081 37.037 0.00 0.00 0.00 2.77
2725 4028 7.345914 AGGGAGTAGTATTTATCACTTTGCTCT 59.654 37.037 0.00 0.00 0.00 4.09
2726 4029 8.639761 GGGAGTAGTATTTATCACTTTGCTCTA 58.360 37.037 0.00 0.00 0.00 2.43
2771 4075 6.572167 AATTTTCTTCTCTTTCTCTGGCAG 57.428 37.500 8.58 8.58 0.00 4.85
2796 4100 4.867086 AGGGTCTAAATATGTGGGGTTTG 58.133 43.478 0.00 0.00 0.00 2.93
2803 4107 6.948886 TCTAAATATGTGGGGTTTGCAAGTTA 59.051 34.615 0.00 0.00 0.00 2.24
2820 4124 3.688235 AGTTAGTCGTGCCTCTTACTCT 58.312 45.455 0.00 0.00 0.00 3.24
2826 4130 5.411781 AGTCGTGCCTCTTACTCTTTATTG 58.588 41.667 0.00 0.00 0.00 1.90
2848 4152 7.857734 TTGGCGTCTCAATTATGAATCTAAA 57.142 32.000 0.00 0.00 34.49 1.85
2858 4162 9.685276 TCAATTATGAATCTAAAGCTTTCAGGA 57.315 29.630 16.57 12.74 33.26 3.86
2868 4172 3.220674 AGCTTTCAGGAAGAGCAAGTT 57.779 42.857 14.23 0.00 38.85 2.66
2884 4188 2.555325 CAAGTTGCTGATCCATGTGTGT 59.445 45.455 0.00 0.00 0.00 3.72
2885 4189 2.156917 AGTTGCTGATCCATGTGTGTG 58.843 47.619 0.00 0.00 0.00 3.82
2886 4190 0.883153 TTGCTGATCCATGTGTGTGC 59.117 50.000 0.00 0.00 0.00 4.57
2898 4204 4.469552 CATGTGTGTGCTAATCAACTGTG 58.530 43.478 0.00 0.00 0.00 3.66
2906 4212 4.002982 TGCTAATCAACTGTGTGGTCATC 58.997 43.478 0.00 0.00 0.00 2.92
2907 4213 4.002982 GCTAATCAACTGTGTGGTCATCA 58.997 43.478 0.00 0.00 0.00 3.07
2912 4218 3.876914 TCAACTGTGTGGTCATCAAAGAC 59.123 43.478 0.00 0.00 37.80 3.01
2927 4233 5.437289 TCAAAGACATTGCTTCACGAATT 57.563 34.783 0.00 0.00 38.98 2.17
2932 4238 5.237815 AGACATTGCTTCACGAATTGACTA 58.762 37.500 0.00 0.00 32.26 2.59
2935 4241 5.412594 ACATTGCTTCACGAATTGACTATGT 59.587 36.000 0.00 0.00 32.26 2.29
2953 4259 7.066163 TGACTATGTGCCAAATCAAGTATCAAG 59.934 37.037 0.00 0.00 0.00 3.02
2955 4261 5.627499 TGTGCCAAATCAAGTATCAAGTC 57.373 39.130 0.00 0.00 0.00 3.01
2956 4262 4.458989 TGTGCCAAATCAAGTATCAAGTCC 59.541 41.667 0.00 0.00 0.00 3.85
2957 4263 4.458989 GTGCCAAATCAAGTATCAAGTCCA 59.541 41.667 0.00 0.00 0.00 4.02
2959 4265 5.183713 TGCCAAATCAAGTATCAAGTCCAAG 59.816 40.000 0.00 0.00 0.00 3.61
2961 4267 5.126061 CCAAATCAAGTATCAAGTCCAAGGG 59.874 44.000 0.00 0.00 0.00 3.95
2962 4268 5.779241 AATCAAGTATCAAGTCCAAGGGA 57.221 39.130 0.00 0.00 0.00 4.20
2963 4269 5.779241 ATCAAGTATCAAGTCCAAGGGAA 57.221 39.130 0.00 0.00 31.38 3.97
2966 4272 6.552008 TCAAGTATCAAGTCCAAGGGAAAAT 58.448 36.000 0.00 0.00 31.38 1.82
2995 4309 2.120274 CCCCCACAAGGCCACAAT 59.880 61.111 5.01 0.00 0.00 2.71
2996 4310 2.285024 CCCCCACAAGGCCACAATG 61.285 63.158 5.01 0.21 0.00 2.82
3007 4321 1.952296 GGCCACAATGCTCTCCATTAG 59.048 52.381 0.00 0.00 42.15 1.73
3008 4322 1.336125 GCCACAATGCTCTCCATTAGC 59.664 52.381 0.00 0.00 42.15 3.09
3014 4328 2.515926 TGCTCTCCATTAGCATCGAC 57.484 50.000 0.00 0.00 44.78 4.20
3015 4329 1.269257 TGCTCTCCATTAGCATCGACG 60.269 52.381 0.00 0.00 44.78 5.12
3016 4330 1.932604 GCTCTCCATTAGCATCGACGG 60.933 57.143 0.00 0.00 39.83 4.79
3017 4331 0.032130 TCTCCATTAGCATCGACGGC 59.968 55.000 2.80 2.80 0.00 5.68
3018 4332 0.032678 CTCCATTAGCATCGACGGCT 59.967 55.000 16.56 16.56 45.18 5.52
3019 4333 0.464036 TCCATTAGCATCGACGGCTT 59.536 50.000 17.41 0.00 42.62 4.35
3020 4334 0.583438 CCATTAGCATCGACGGCTTG 59.417 55.000 17.41 11.07 42.62 4.01
3021 4335 0.583438 CATTAGCATCGACGGCTTGG 59.417 55.000 17.41 5.52 42.62 3.61
3022 4336 0.464036 ATTAGCATCGACGGCTTGGA 59.536 50.000 17.41 6.33 42.62 3.53
3023 4337 0.248012 TTAGCATCGACGGCTTGGAA 59.752 50.000 17.41 4.90 42.62 3.53
3024 4338 0.248012 TAGCATCGACGGCTTGGAAA 59.752 50.000 17.41 0.00 42.62 3.13
3025 4339 0.605319 AGCATCGACGGCTTGGAAAA 60.605 50.000 7.56 0.00 38.81 2.29
3026 4340 0.179189 GCATCGACGGCTTGGAAAAG 60.179 55.000 3.77 0.00 0.00 2.27
3027 4341 0.179189 CATCGACGGCTTGGAAAAGC 60.179 55.000 1.79 1.79 44.76 3.51
3028 4342 0.321653 ATCGACGGCTTGGAAAAGCT 60.322 50.000 10.05 0.00 44.86 3.74
3029 4343 0.319083 TCGACGGCTTGGAAAAGCTA 59.681 50.000 10.05 0.00 44.86 3.32
3030 4344 0.721718 CGACGGCTTGGAAAAGCTAG 59.278 55.000 10.05 7.45 44.86 3.42
3031 4345 1.809684 GACGGCTTGGAAAAGCTAGT 58.190 50.000 10.05 10.17 44.86 2.57
3032 4346 1.732809 GACGGCTTGGAAAAGCTAGTC 59.267 52.381 16.97 16.97 44.86 2.59
3033 4347 1.071699 ACGGCTTGGAAAAGCTAGTCA 59.928 47.619 10.05 0.00 44.86 3.41
3034 4348 2.290323 ACGGCTTGGAAAAGCTAGTCAT 60.290 45.455 10.05 0.00 44.86 3.06
3035 4349 2.096496 CGGCTTGGAAAAGCTAGTCATG 59.904 50.000 10.05 0.00 44.86 3.07
3036 4350 2.159324 GGCTTGGAAAAGCTAGTCATGC 60.159 50.000 10.05 0.00 44.86 4.06
3037 4351 2.476854 GCTTGGAAAAGCTAGTCATGCG 60.477 50.000 3.24 0.00 42.32 4.73
3038 4352 2.472695 TGGAAAAGCTAGTCATGCGT 57.527 45.000 0.00 0.00 35.28 5.24
3039 4353 2.346803 TGGAAAAGCTAGTCATGCGTC 58.653 47.619 0.00 0.00 35.28 5.19
3040 4354 2.028112 TGGAAAAGCTAGTCATGCGTCT 60.028 45.455 0.00 0.00 35.28 4.18
3041 4355 2.605366 GGAAAAGCTAGTCATGCGTCTC 59.395 50.000 0.00 0.00 35.28 3.36
3042 4356 3.254060 GAAAAGCTAGTCATGCGTCTCA 58.746 45.455 0.00 0.00 35.28 3.27
3043 4357 3.533606 AAAGCTAGTCATGCGTCTCAT 57.466 42.857 0.00 0.00 35.31 2.90
3044 4358 3.533606 AAGCTAGTCATGCGTCTCATT 57.466 42.857 0.00 0.00 31.79 2.57
3045 4359 3.090952 AGCTAGTCATGCGTCTCATTC 57.909 47.619 0.00 0.00 31.79 2.67
3046 4360 2.131183 GCTAGTCATGCGTCTCATTCC 58.869 52.381 0.00 0.00 31.79 3.01
3047 4361 2.223923 GCTAGTCATGCGTCTCATTCCT 60.224 50.000 0.00 0.00 31.79 3.36
3048 4362 2.306341 AGTCATGCGTCTCATTCCTG 57.694 50.000 0.00 0.00 31.79 3.86
3049 4363 1.552337 AGTCATGCGTCTCATTCCTGT 59.448 47.619 0.00 0.00 31.79 4.00
3050 4364 2.027745 AGTCATGCGTCTCATTCCTGTT 60.028 45.455 0.00 0.00 31.79 3.16
3051 4365 2.744202 GTCATGCGTCTCATTCCTGTTT 59.256 45.455 0.00 0.00 31.79 2.83
3052 4366 3.932710 GTCATGCGTCTCATTCCTGTTTA 59.067 43.478 0.00 0.00 31.79 2.01
3053 4367 4.391830 GTCATGCGTCTCATTCCTGTTTAA 59.608 41.667 0.00 0.00 31.79 1.52
3054 4368 4.391830 TCATGCGTCTCATTCCTGTTTAAC 59.608 41.667 0.00 0.00 31.79 2.01
3055 4369 3.734463 TGCGTCTCATTCCTGTTTAACA 58.266 40.909 0.00 0.00 0.00 2.41
3056 4370 4.130857 TGCGTCTCATTCCTGTTTAACAA 58.869 39.130 0.00 0.00 0.00 2.83
3057 4371 4.576873 TGCGTCTCATTCCTGTTTAACAAA 59.423 37.500 0.00 0.00 0.00 2.83
3058 4372 5.240623 TGCGTCTCATTCCTGTTTAACAAAT 59.759 36.000 0.00 0.00 0.00 2.32
3059 4373 6.428465 TGCGTCTCATTCCTGTTTAACAAATA 59.572 34.615 0.00 0.00 0.00 1.40
3060 4374 7.041030 TGCGTCTCATTCCTGTTTAACAAATAA 60.041 33.333 0.00 0.00 0.00 1.40
3061 4375 7.968405 GCGTCTCATTCCTGTTTAACAAATAAT 59.032 33.333 0.00 0.00 0.00 1.28
3062 4376 9.840427 CGTCTCATTCCTGTTTAACAAATAATT 57.160 29.630 0.00 0.00 0.00 1.40
3089 4403 9.720769 TTCTTCAAAAACGTTATAATCCTCTCT 57.279 29.630 0.00 0.00 0.00 3.10
3090 4404 9.151471 TCTTCAAAAACGTTATAATCCTCTCTG 57.849 33.333 0.00 0.00 0.00 3.35
3091 4405 7.303634 TCAAAAACGTTATAATCCTCTCTGC 57.696 36.000 0.00 0.00 0.00 4.26
3092 4406 6.876789 TCAAAAACGTTATAATCCTCTCTGCA 59.123 34.615 0.00 0.00 0.00 4.41
3093 4407 7.552687 TCAAAAACGTTATAATCCTCTCTGCAT 59.447 33.333 0.00 0.00 0.00 3.96
3094 4408 7.865706 AAAACGTTATAATCCTCTCTGCATT 57.134 32.000 0.00 0.00 0.00 3.56
3095 4409 7.484035 AAACGTTATAATCCTCTCTGCATTC 57.516 36.000 0.00 0.00 0.00 2.67
3096 4410 6.161855 ACGTTATAATCCTCTCTGCATTCA 57.838 37.500 0.00 0.00 0.00 2.57
3097 4411 6.763355 ACGTTATAATCCTCTCTGCATTCAT 58.237 36.000 0.00 0.00 0.00 2.57
3098 4412 7.896811 ACGTTATAATCCTCTCTGCATTCATA 58.103 34.615 0.00 0.00 0.00 2.15
3099 4413 8.535335 ACGTTATAATCCTCTCTGCATTCATAT 58.465 33.333 0.00 0.00 0.00 1.78
3106 4420 9.638176 AATCCTCTCTGCATTCATATAAAACTT 57.362 29.630 0.00 0.00 0.00 2.66
3107 4421 9.638176 ATCCTCTCTGCATTCATATAAAACTTT 57.362 29.630 0.00 0.00 0.00 2.66
3108 4422 9.466497 TCCTCTCTGCATTCATATAAAACTTTT 57.534 29.630 0.00 0.00 0.00 2.27
3109 4423 9.512435 CCTCTCTGCATTCATATAAAACTTTTG 57.488 33.333 0.00 0.00 0.00 2.44
3112 4426 9.512435 CTCTGCATTCATATAAAACTTTTGAGG 57.488 33.333 0.00 0.00 0.00 3.86
3113 4427 7.975616 TCTGCATTCATATAAAACTTTTGAGGC 59.024 33.333 0.00 0.00 0.00 4.70
3114 4428 6.751425 TGCATTCATATAAAACTTTTGAGGCG 59.249 34.615 0.00 0.00 0.00 5.52
3115 4429 6.751888 GCATTCATATAAAACTTTTGAGGCGT 59.248 34.615 0.00 0.00 0.00 5.68
3116 4430 7.253750 GCATTCATATAAAACTTTTGAGGCGTG 60.254 37.037 0.00 0.00 0.00 5.34
3117 4431 5.636837 TCATATAAAACTTTTGAGGCGTGC 58.363 37.500 0.00 0.00 0.00 5.34
3118 4432 2.785713 TAAAACTTTTGAGGCGTGCC 57.214 45.000 1.67 1.67 0.00 5.01
3119 4433 0.820871 AAAACTTTTGAGGCGTGCCA 59.179 45.000 14.29 0.00 38.92 4.92
3120 4434 0.385390 AAACTTTTGAGGCGTGCCAG 59.615 50.000 14.29 3.60 38.92 4.85
3121 4435 1.455383 AACTTTTGAGGCGTGCCAGG 61.455 55.000 14.29 0.00 38.92 4.45
3122 4436 1.898574 CTTTTGAGGCGTGCCAGGT 60.899 57.895 14.29 0.00 38.92 4.00
3123 4437 0.605319 CTTTTGAGGCGTGCCAGGTA 60.605 55.000 14.29 0.00 38.92 3.08
3124 4438 0.605319 TTTTGAGGCGTGCCAGGTAG 60.605 55.000 14.29 0.00 38.92 3.18
3125 4439 2.463589 TTTGAGGCGTGCCAGGTAGG 62.464 60.000 14.29 0.00 38.92 3.18
3126 4440 3.391382 GAGGCGTGCCAGGTAGGT 61.391 66.667 14.29 0.00 40.61 3.08
3127 4441 3.372554 GAGGCGTGCCAGGTAGGTC 62.373 68.421 14.29 0.00 40.61 3.85
3128 4442 3.702048 GGCGTGCCAGGTAGGTCA 61.702 66.667 5.89 0.00 40.61 4.02
3129 4443 2.345991 GCGTGCCAGGTAGGTCAA 59.654 61.111 0.00 0.00 40.61 3.18
3130 4444 1.302192 GCGTGCCAGGTAGGTCAAA 60.302 57.895 0.00 0.00 40.61 2.69
3131 4445 0.887387 GCGTGCCAGGTAGGTCAAAA 60.887 55.000 0.00 0.00 40.61 2.44
3132 4446 1.600023 CGTGCCAGGTAGGTCAAAAA 58.400 50.000 0.00 0.00 40.61 1.94
3133 4447 1.535462 CGTGCCAGGTAGGTCAAAAAG 59.465 52.381 0.00 0.00 40.61 2.27
3134 4448 1.269723 GTGCCAGGTAGGTCAAAAAGC 59.730 52.381 0.00 0.00 40.61 3.51
3135 4449 1.144913 TGCCAGGTAGGTCAAAAAGCT 59.855 47.619 0.00 0.00 40.61 3.74
3136 4450 2.239400 GCCAGGTAGGTCAAAAAGCTT 58.761 47.619 0.00 0.00 40.61 3.74
3137 4451 2.029918 GCCAGGTAGGTCAAAAAGCTTG 60.030 50.000 0.00 0.00 40.61 4.01
3138 4452 2.558359 CCAGGTAGGTCAAAAAGCTTGG 59.442 50.000 0.00 0.00 36.91 3.61
3139 4453 2.029918 CAGGTAGGTCAAAAAGCTTGGC 60.030 50.000 0.00 0.00 36.91 4.52
3140 4454 2.158460 AGGTAGGTCAAAAAGCTTGGCT 60.158 45.455 0.00 0.00 42.56 4.75
3141 4455 2.229062 GGTAGGTCAAAAAGCTTGGCTC 59.771 50.000 0.00 0.00 38.25 4.70
3142 4456 2.371658 AGGTCAAAAAGCTTGGCTCT 57.628 45.000 0.00 0.00 38.25 4.09
3143 4457 2.234143 AGGTCAAAAAGCTTGGCTCTC 58.766 47.619 0.00 0.00 38.25 3.20
3144 4458 2.158549 AGGTCAAAAAGCTTGGCTCTCT 60.159 45.455 0.00 0.00 38.25 3.10
3145 4459 2.625314 GGTCAAAAAGCTTGGCTCTCTT 59.375 45.455 0.00 0.00 38.25 2.85
3146 4460 3.068732 GGTCAAAAAGCTTGGCTCTCTTT 59.931 43.478 0.00 0.00 38.25 2.52
3147 4461 4.047142 GTCAAAAAGCTTGGCTCTCTTTG 58.953 43.478 0.00 5.44 38.25 2.77
3148 4462 3.953612 TCAAAAAGCTTGGCTCTCTTTGA 59.046 39.130 13.55 13.55 38.25 2.69
3149 4463 4.402155 TCAAAAAGCTTGGCTCTCTTTGAA 59.598 37.500 14.68 3.15 38.25 2.69
3150 4464 3.998099 AAAGCTTGGCTCTCTTTGAAC 57.002 42.857 0.00 0.00 38.25 3.18
3151 4465 2.645838 AGCTTGGCTCTCTTTGAACA 57.354 45.000 0.00 0.00 30.62 3.18
3152 4466 3.151912 AGCTTGGCTCTCTTTGAACAT 57.848 42.857 0.00 0.00 30.62 2.71
3153 4467 3.080319 AGCTTGGCTCTCTTTGAACATC 58.920 45.455 0.00 0.00 30.62 3.06
3154 4468 2.816087 GCTTGGCTCTCTTTGAACATCA 59.184 45.455 0.00 0.00 0.00 3.07
3155 4469 3.365767 GCTTGGCTCTCTTTGAACATCAC 60.366 47.826 0.00 0.00 0.00 3.06
3156 4470 3.777106 TGGCTCTCTTTGAACATCACT 57.223 42.857 0.00 0.00 0.00 3.41
3157 4471 4.890158 TGGCTCTCTTTGAACATCACTA 57.110 40.909 0.00 0.00 0.00 2.74
3158 4472 4.825422 TGGCTCTCTTTGAACATCACTAG 58.175 43.478 0.00 0.00 0.00 2.57
3159 4473 3.620821 GGCTCTCTTTGAACATCACTAGC 59.379 47.826 0.00 0.00 0.00 3.42
3160 4474 3.620821 GCTCTCTTTGAACATCACTAGCC 59.379 47.826 0.00 0.00 0.00 3.93
3161 4475 4.825422 CTCTCTTTGAACATCACTAGCCA 58.175 43.478 0.00 0.00 0.00 4.75
3162 4476 5.227569 TCTCTTTGAACATCACTAGCCAA 57.772 39.130 0.00 0.00 0.00 4.52
3163 4477 5.809001 TCTCTTTGAACATCACTAGCCAAT 58.191 37.500 0.00 0.00 0.00 3.16
3164 4478 5.877012 TCTCTTTGAACATCACTAGCCAATC 59.123 40.000 0.00 0.00 0.00 2.67
3165 4479 4.943705 TCTTTGAACATCACTAGCCAATCC 59.056 41.667 0.00 0.00 0.00 3.01
3166 4480 3.281727 TGAACATCACTAGCCAATCCC 57.718 47.619 0.00 0.00 0.00 3.85
3167 4481 2.846206 TGAACATCACTAGCCAATCCCT 59.154 45.455 0.00 0.00 0.00 4.20
3168 4482 3.266772 TGAACATCACTAGCCAATCCCTT 59.733 43.478 0.00 0.00 0.00 3.95
3169 4483 4.263905 TGAACATCACTAGCCAATCCCTTT 60.264 41.667 0.00 0.00 0.00 3.11
3170 4484 5.045213 TGAACATCACTAGCCAATCCCTTTA 60.045 40.000 0.00 0.00 0.00 1.85
3171 4485 5.450818 ACATCACTAGCCAATCCCTTTAA 57.549 39.130 0.00 0.00 0.00 1.52
3172 4486 5.826643 ACATCACTAGCCAATCCCTTTAAA 58.173 37.500 0.00 0.00 0.00 1.52
3173 4487 5.652452 ACATCACTAGCCAATCCCTTTAAAC 59.348 40.000 0.00 0.00 0.00 2.01
3174 4488 4.595986 TCACTAGCCAATCCCTTTAAACC 58.404 43.478 0.00 0.00 0.00 3.27
3175 4489 3.377172 CACTAGCCAATCCCTTTAAACCG 59.623 47.826 0.00 0.00 0.00 4.44
3176 4490 1.182667 AGCCAATCCCTTTAAACCGC 58.817 50.000 0.00 0.00 0.00 5.68
3177 4491 0.892063 GCCAATCCCTTTAAACCGCA 59.108 50.000 0.00 0.00 0.00 5.69
3178 4492 1.480545 GCCAATCCCTTTAAACCGCAT 59.519 47.619 0.00 0.00 0.00 4.73
3179 4493 2.691011 GCCAATCCCTTTAAACCGCATA 59.309 45.455 0.00 0.00 0.00 3.14
3180 4494 3.131400 GCCAATCCCTTTAAACCGCATAA 59.869 43.478 0.00 0.00 0.00 1.90
3181 4495 4.678622 CCAATCCCTTTAAACCGCATAAC 58.321 43.478 0.00 0.00 0.00 1.89
3182 4496 4.401202 CCAATCCCTTTAAACCGCATAACT 59.599 41.667 0.00 0.00 0.00 2.24
3183 4497 5.449999 CCAATCCCTTTAAACCGCATAACTC 60.450 44.000 0.00 0.00 0.00 3.01
3184 4498 3.613030 TCCCTTTAAACCGCATAACTCC 58.387 45.455 0.00 0.00 0.00 3.85
3185 4499 3.264964 TCCCTTTAAACCGCATAACTCCT 59.735 43.478 0.00 0.00 0.00 3.69
3186 4500 4.470664 TCCCTTTAAACCGCATAACTCCTA 59.529 41.667 0.00 0.00 0.00 2.94
3187 4501 5.131475 TCCCTTTAAACCGCATAACTCCTAT 59.869 40.000 0.00 0.00 0.00 2.57
3188 4502 6.327104 TCCCTTTAAACCGCATAACTCCTATA 59.673 38.462 0.00 0.00 0.00 1.31
3189 4503 6.993902 CCCTTTAAACCGCATAACTCCTATAA 59.006 38.462 0.00 0.00 0.00 0.98
3190 4504 7.499895 CCCTTTAAACCGCATAACTCCTATAAA 59.500 37.037 0.00 0.00 0.00 1.40
3191 4505 9.063615 CCTTTAAACCGCATAACTCCTATAAAT 57.936 33.333 0.00 0.00 0.00 1.40
3196 4510 7.272037 ACCGCATAACTCCTATAAATTTTGG 57.728 36.000 0.00 0.00 0.00 3.28
3197 4511 6.831868 ACCGCATAACTCCTATAAATTTTGGT 59.168 34.615 0.00 0.00 0.00 3.67
3198 4512 7.340999 ACCGCATAACTCCTATAAATTTTGGTT 59.659 33.333 0.00 0.00 0.00 3.67
3199 4513 8.194769 CCGCATAACTCCTATAAATTTTGGTTT 58.805 33.333 0.00 0.00 0.00 3.27
3200 4514 9.581099 CGCATAACTCCTATAAATTTTGGTTTT 57.419 29.630 0.00 0.00 0.00 2.43
3218 4532 5.276270 GGTTTTGAAGAGTTAAACCGAACC 58.724 41.667 0.00 0.00 40.78 3.62
3219 4533 5.066893 GGTTTTGAAGAGTTAAACCGAACCT 59.933 40.000 0.00 0.00 40.78 3.50
3220 4534 6.260714 GGTTTTGAAGAGTTAAACCGAACCTA 59.739 38.462 0.00 0.00 40.78 3.08
3221 4535 7.201723 GGTTTTGAAGAGTTAAACCGAACCTAA 60.202 37.037 0.00 0.00 40.78 2.69
3222 4536 6.849588 TTGAAGAGTTAAACCGAACCTAAC 57.150 37.500 0.00 0.00 0.00 2.34
3223 4537 5.299949 TGAAGAGTTAAACCGAACCTAACC 58.700 41.667 0.00 0.00 0.00 2.85
3224 4538 3.917988 AGAGTTAAACCGAACCTAACCG 58.082 45.455 0.00 0.00 0.00 4.44
3225 4539 3.573967 AGAGTTAAACCGAACCTAACCGA 59.426 43.478 0.00 0.00 0.00 4.69
3226 4540 4.039124 AGAGTTAAACCGAACCTAACCGAA 59.961 41.667 0.00 0.00 0.00 4.30
3227 4541 4.058124 AGTTAAACCGAACCTAACCGAAC 58.942 43.478 0.00 0.00 0.00 3.95
3228 4542 1.882912 AAACCGAACCTAACCGAACC 58.117 50.000 0.00 0.00 0.00 3.62
3229 4543 0.758123 AACCGAACCTAACCGAACCA 59.242 50.000 0.00 0.00 0.00 3.67
3230 4544 0.978907 ACCGAACCTAACCGAACCAT 59.021 50.000 0.00 0.00 0.00 3.55
3231 4545 1.348696 ACCGAACCTAACCGAACCATT 59.651 47.619 0.00 0.00 0.00 3.16
3232 4546 2.566724 ACCGAACCTAACCGAACCATTA 59.433 45.455 0.00 0.00 0.00 1.90
3233 4547 3.198417 ACCGAACCTAACCGAACCATTAT 59.802 43.478 0.00 0.00 0.00 1.28
3234 4548 3.805971 CCGAACCTAACCGAACCATTATC 59.194 47.826 0.00 0.00 0.00 1.75
3235 4549 4.442472 CCGAACCTAACCGAACCATTATCT 60.442 45.833 0.00 0.00 0.00 1.98
3236 4550 5.221303 CCGAACCTAACCGAACCATTATCTA 60.221 44.000 0.00 0.00 0.00 1.98
3237 4551 5.919141 CGAACCTAACCGAACCATTATCTAG 59.081 44.000 0.00 0.00 0.00 2.43
3238 4552 6.460676 CGAACCTAACCGAACCATTATCTAGT 60.461 42.308 0.00 0.00 0.00 2.57
3239 4553 6.803366 ACCTAACCGAACCATTATCTAGTT 57.197 37.500 0.00 0.00 0.00 2.24
3240 4554 7.191593 ACCTAACCGAACCATTATCTAGTTT 57.808 36.000 0.00 0.00 0.00 2.66
3241 4555 8.310122 ACCTAACCGAACCATTATCTAGTTTA 57.690 34.615 0.00 0.00 0.00 2.01
3242 4556 8.761689 ACCTAACCGAACCATTATCTAGTTTAA 58.238 33.333 0.00 0.00 0.00 1.52
3243 4557 9.038803 CCTAACCGAACCATTATCTAGTTTAAC 57.961 37.037 0.00 0.00 0.00 2.01
3244 4558 9.813446 CTAACCGAACCATTATCTAGTTTAACT 57.187 33.333 2.32 2.32 0.00 2.24
3245 4559 8.713737 AACCGAACCATTATCTAGTTTAACTC 57.286 34.615 0.00 0.00 0.00 3.01
3246 4560 7.844009 ACCGAACCATTATCTAGTTTAACTCA 58.156 34.615 0.00 0.00 0.00 3.41
3247 4561 8.316214 ACCGAACCATTATCTAGTTTAACTCAA 58.684 33.333 0.00 0.00 0.00 3.02
3248 4562 9.158233 CCGAACCATTATCTAGTTTAACTCAAA 57.842 33.333 0.00 0.00 0.00 2.69
3271 4585 2.357327 AAAAATTTAAGCGGCGGGTC 57.643 45.000 9.78 0.00 0.00 4.46
3272 4586 1.249407 AAAATTTAAGCGGCGGGTCA 58.751 45.000 9.78 0.00 0.00 4.02
3273 4587 1.249407 AAATTTAAGCGGCGGGTCAA 58.751 45.000 9.78 0.00 0.00 3.18
3274 4588 0.524414 AATTTAAGCGGCGGGTCAAC 59.476 50.000 9.78 0.00 0.00 3.18
3275 4589 1.641123 ATTTAAGCGGCGGGTCAACG 61.641 55.000 9.78 0.00 0.00 4.10
3276 4590 4.745751 TAAGCGGCGGGTCAACGG 62.746 66.667 9.78 0.00 0.00 4.44
3281 4595 3.692406 GGCGGGTCAACGGACTCT 61.692 66.667 0.00 0.00 42.67 3.24
3282 4596 2.342648 GCGGGTCAACGGACTCTT 59.657 61.111 0.00 0.00 42.67 2.85
3283 4597 1.588082 GCGGGTCAACGGACTCTTA 59.412 57.895 0.00 0.00 42.67 2.10
3284 4598 0.735287 GCGGGTCAACGGACTCTTAC 60.735 60.000 0.00 0.00 42.67 2.34
3285 4599 0.599558 CGGGTCAACGGACTCTTACA 59.400 55.000 0.00 0.00 42.67 2.41
3286 4600 1.203994 CGGGTCAACGGACTCTTACAT 59.796 52.381 0.00 0.00 42.67 2.29
3287 4601 2.353406 CGGGTCAACGGACTCTTACATT 60.353 50.000 0.00 0.00 42.67 2.71
3288 4602 3.671716 GGGTCAACGGACTCTTACATTT 58.328 45.455 0.00 0.00 41.55 2.32
3289 4603 3.435671 GGGTCAACGGACTCTTACATTTG 59.564 47.826 0.00 0.00 41.55 2.32
3290 4604 4.312443 GGTCAACGGACTCTTACATTTGA 58.688 43.478 0.00 0.00 43.77 2.69
3291 4605 4.389077 GGTCAACGGACTCTTACATTTGAG 59.611 45.833 0.00 0.00 43.77 3.02
3292 4606 4.989168 GTCAACGGACTCTTACATTTGAGT 59.011 41.667 0.00 0.00 45.06 3.41
3293 4607 4.988540 TCAACGGACTCTTACATTTGAGTG 59.011 41.667 0.09 0.00 42.79 3.51
3294 4608 3.926616 ACGGACTCTTACATTTGAGTGG 58.073 45.455 0.09 0.00 42.79 4.00
3295 4609 2.673368 CGGACTCTTACATTTGAGTGGC 59.327 50.000 0.09 0.00 42.79 5.01
3296 4610 3.010420 GGACTCTTACATTTGAGTGGCC 58.990 50.000 0.00 0.00 42.79 5.36
3297 4611 2.673368 GACTCTTACATTTGAGTGGCCG 59.327 50.000 0.00 0.00 42.79 6.13
3298 4612 2.038557 ACTCTTACATTTGAGTGGCCGT 59.961 45.455 0.00 0.00 41.40 5.68
3299 4613 3.259876 ACTCTTACATTTGAGTGGCCGTA 59.740 43.478 0.00 0.00 41.40 4.02
3300 4614 3.857052 TCTTACATTTGAGTGGCCGTAG 58.143 45.455 0.00 0.00 0.00 3.51
3301 4615 2.018542 TACATTTGAGTGGCCGTAGC 57.981 50.000 0.00 0.00 38.76 3.58
3311 4625 2.202756 GCCGTAGCCAAGTCTCGG 60.203 66.667 0.00 0.00 43.37 4.63
3312 4626 2.494918 CCGTAGCCAAGTCTCGGG 59.505 66.667 0.00 0.00 37.92 5.14
3313 4627 2.050350 CCGTAGCCAAGTCTCGGGA 61.050 63.158 0.00 0.00 37.92 5.14
3314 4628 1.392710 CCGTAGCCAAGTCTCGGGAT 61.393 60.000 0.00 0.00 37.92 3.85
3315 4629 1.315690 CGTAGCCAAGTCTCGGGATA 58.684 55.000 0.00 0.00 0.00 2.59
3316 4630 1.679680 CGTAGCCAAGTCTCGGGATAA 59.320 52.381 0.00 0.00 0.00 1.75
3317 4631 2.296471 CGTAGCCAAGTCTCGGGATAAT 59.704 50.000 0.00 0.00 0.00 1.28
3318 4632 3.243771 CGTAGCCAAGTCTCGGGATAATT 60.244 47.826 0.00 0.00 0.00 1.40
3319 4633 3.477210 AGCCAAGTCTCGGGATAATTC 57.523 47.619 0.00 0.00 0.00 2.17
3320 4634 2.104963 AGCCAAGTCTCGGGATAATTCC 59.895 50.000 0.00 0.00 41.77 3.01
3322 4636 2.548067 CCAAGTCTCGGGATAATTCCGG 60.548 54.545 0.00 0.00 46.78 5.14
3323 4637 0.680061 AGTCTCGGGATAATTCCGGC 59.320 55.000 0.00 0.00 46.78 6.13
3324 4638 0.320508 GTCTCGGGATAATTCCGGCC 60.321 60.000 0.00 0.00 46.78 6.13
3325 4639 1.003718 CTCGGGATAATTCCGGCCC 60.004 63.158 0.00 0.00 46.78 5.80
3326 4640 1.460689 TCGGGATAATTCCGGCCCT 60.461 57.895 10.44 0.00 46.78 5.19
3327 4641 1.057851 TCGGGATAATTCCGGCCCTT 61.058 55.000 10.44 0.28 46.78 3.95
3328 4642 0.605589 CGGGATAATTCCGGCCCTTC 60.606 60.000 10.44 0.00 43.63 3.46
3329 4643 0.251209 GGGATAATTCCGGCCCTTCC 60.251 60.000 0.00 0.00 43.63 3.46
3330 4644 0.251209 GGATAATTCCGGCCCTTCCC 60.251 60.000 0.00 0.00 30.72 3.97
3331 4645 0.771755 GATAATTCCGGCCCTTCCCT 59.228 55.000 0.00 0.00 0.00 4.20
3332 4646 0.771755 ATAATTCCGGCCCTTCCCTC 59.228 55.000 0.00 0.00 0.00 4.30
3333 4647 0.622154 TAATTCCGGCCCTTCCCTCA 60.622 55.000 0.00 0.00 0.00 3.86
3334 4648 1.289244 AATTCCGGCCCTTCCCTCAT 61.289 55.000 0.00 0.00 0.00 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 8.617809 GTTAATTTTAATATGACCAGAAGGCGA 58.382 33.333 0.00 0.00 39.06 5.54
98 100 1.076559 TCGCCTACCGAATCCCTGA 60.077 57.895 0.00 0.00 44.21 3.86
111 113 3.054802 AGGAAGAGACAATGATTTCGCCT 60.055 43.478 0.00 0.00 0.00 5.52
118 120 6.776887 ATAATCCCAGGAAGAGACAATGAT 57.223 37.500 0.00 0.00 0.00 2.45
154 156 0.955428 TCCACTTCATCAACGCTGGC 60.955 55.000 0.00 0.00 0.00 4.85
170 172 1.863662 GAGACACGTCCGAAGCTCCA 61.864 60.000 0.00 0.00 0.00 3.86
181 183 1.045407 TAAAGGCCAGTGAGACACGT 58.955 50.000 5.01 0.00 39.64 4.49
225 229 4.091453 CGCAGTCCGTTTCCAAAATAAT 57.909 40.909 0.00 0.00 0.00 1.28
247 251 2.693074 GCAAGGAAGGAGACCACAAAAA 59.307 45.455 0.00 0.00 0.00 1.94
297 301 5.972327 ATCACTTCCTTCTTCAGATCCAT 57.028 39.130 0.00 0.00 0.00 3.41
322 326 4.715534 TTTGGTAGGAACTTGGTGATGA 57.284 40.909 0.00 0.00 41.75 2.92
346 350 4.813697 GTCTATTGATCTTGACCAGCTTCC 59.186 45.833 0.00 0.00 0.00 3.46
347 351 5.423015 TGTCTATTGATCTTGACCAGCTTC 58.577 41.667 0.00 0.00 0.00 3.86
356 360 6.263344 CACATTGGCTTGTCTATTGATCTTG 58.737 40.000 0.00 0.00 0.00 3.02
397 401 9.383519 CTGACCTATTATCAAAGCTAAACTTCA 57.616 33.333 0.00 0.00 37.75 3.02
466 470 7.144722 AGTTGAATACAATCATTTCTTGCGA 57.855 32.000 0.00 0.00 38.32 5.10
467 471 9.507280 AATAGTTGAATACAATCATTTCTTGCG 57.493 29.630 0.00 0.00 38.32 4.85
533 546 2.300152 TCTTCCTCATATGCCCGATCAC 59.700 50.000 0.00 0.00 0.00 3.06
537 550 3.924114 TTTTCTTCCTCATATGCCCGA 57.076 42.857 0.00 0.00 0.00 5.14
541 554 7.507733 ACTCATCATTTTCTTCCTCATATGC 57.492 36.000 0.00 0.00 0.00 3.14
544 557 7.663081 GGCATACTCATCATTTTCTTCCTCATA 59.337 37.037 0.00 0.00 0.00 2.15
561 574 1.218047 GTCCGCACAGGCATACTCA 59.782 57.895 0.00 0.00 41.24 3.41
566 579 4.760047 GTCCGTCCGCACAGGCAT 62.760 66.667 0.00 0.00 41.24 4.40
572 585 1.520787 CCCTATTGTCCGTCCGCAC 60.521 63.158 0.00 0.00 0.00 5.34
576 589 3.632643 TTAAACCCCTATTGTCCGTCC 57.367 47.619 0.00 0.00 0.00 4.79
581 594 4.334481 CGTGTCCATTAAACCCCTATTGTC 59.666 45.833 0.00 0.00 0.00 3.18
586 599 1.065272 GGCGTGTCCATTAAACCCCTA 60.065 52.381 0.00 0.00 34.01 3.53
587 600 0.323087 GGCGTGTCCATTAAACCCCT 60.323 55.000 0.00 0.00 34.01 4.79
588 601 1.317431 GGGCGTGTCCATTAAACCCC 61.317 60.000 0.00 0.00 36.21 4.95
592 605 0.250814 AACCGGGCGTGTCCATTAAA 60.251 50.000 6.32 0.00 36.21 1.52
593 606 0.612229 TAACCGGGCGTGTCCATTAA 59.388 50.000 6.32 0.00 36.21 1.40
594 607 0.108233 GTAACCGGGCGTGTCCATTA 60.108 55.000 6.32 0.00 36.21 1.90
595 608 1.376295 GTAACCGGGCGTGTCCATT 60.376 57.895 6.32 0.00 36.21 3.16
597 610 2.918802 AGTAACCGGGCGTGTCCA 60.919 61.111 6.32 0.00 36.21 4.02
598 611 2.433664 CAGTAACCGGGCGTGTCC 60.434 66.667 6.32 0.00 0.00 4.02
599 612 1.735559 GTCAGTAACCGGGCGTGTC 60.736 63.158 6.32 0.00 0.00 3.67
600 613 2.341176 GTCAGTAACCGGGCGTGT 59.659 61.111 6.32 0.00 0.00 4.49
601 614 2.433664 GGTCAGTAACCGGGCGTG 60.434 66.667 6.32 0.00 38.58 5.34
608 621 0.743345 GACATGCCCGGTCAGTAACC 60.743 60.000 0.00 0.00 45.45 2.85
609 622 1.082117 CGACATGCCCGGTCAGTAAC 61.082 60.000 0.00 0.00 34.97 2.50
610 623 1.216977 CGACATGCCCGGTCAGTAA 59.783 57.895 0.00 0.00 34.97 2.24
611 624 1.663379 CTCGACATGCCCGGTCAGTA 61.663 60.000 0.00 0.00 34.97 2.74
612 625 2.994995 TCGACATGCCCGGTCAGT 60.995 61.111 0.00 0.00 34.97 3.41
613 626 2.202797 CTCGACATGCCCGGTCAG 60.203 66.667 0.00 0.00 34.97 3.51
630 654 1.001393 TTGCCTCCAATTCGACCCC 60.001 57.895 0.00 0.00 0.00 4.95
636 660 3.584733 AGTATCCCTTGCCTCCAATTC 57.415 47.619 0.00 0.00 0.00 2.17
641 665 3.712218 AGTTAGAAGTATCCCTTGCCTCC 59.288 47.826 0.00 0.00 32.03 4.30
648 672 7.402071 TGTGGTTGAATAGTTAGAAGTATCCCT 59.598 37.037 0.00 0.00 0.00 4.20
649 673 7.562135 TGTGGTTGAATAGTTAGAAGTATCCC 58.438 38.462 0.00 0.00 0.00 3.85
676 700 3.057596 CCACACAAAGTATGCGAACCAAT 60.058 43.478 0.00 0.00 0.00 3.16
680 704 1.877443 ACCCACACAAAGTATGCGAAC 59.123 47.619 0.00 0.00 0.00 3.95
698 722 1.966451 CTCTCGGCCAACACCAACC 60.966 63.158 2.24 0.00 0.00 3.77
735 759 9.143631 GCATTTCTATTGAGCTTAACAAAACAT 57.856 29.630 0.00 0.00 0.00 2.71
746 1016 6.016777 CGATAAAAGGGCATTTCTATTGAGCT 60.017 38.462 0.00 0.00 0.00 4.09
755 1025 9.581099 TTTTTATCTTCGATAAAAGGGCATTTC 57.419 29.630 16.61 0.00 35.63 2.17
793 1067 1.071471 CGGTGGTGCCTGAAGAGTT 59.929 57.895 0.00 0.00 34.25 3.01
841 1115 0.747255 CTGAGTGTAGGCCGCTACAT 59.253 55.000 8.01 0.00 41.21 2.29
947 1231 1.404315 CGGGCTTTAGTGAGGTCTGAC 60.404 57.143 0.00 0.00 0.00 3.51
1013 1329 0.539051 AAGCGGGAGGAAGAGATGTG 59.461 55.000 0.00 0.00 0.00 3.21
1014 1330 0.827368 GAAGCGGGAGGAAGAGATGT 59.173 55.000 0.00 0.00 0.00 3.06
1481 1797 1.799181 GCTCGTCGTACATGCATCTGT 60.799 52.381 0.00 0.00 0.00 3.41
1485 1801 2.010145 AAAGCTCGTCGTACATGCAT 57.990 45.000 0.00 0.00 0.00 3.96
1528 1844 3.878519 GGTCTCGGACGCGAGGAG 61.879 72.222 15.93 15.92 36.71 3.69
1661 1977 0.668535 CTGCGATACGAGGGACATGA 59.331 55.000 0.00 0.00 0.00 3.07
1672 1988 2.517450 GCACGGACAGCTGCGATAC 61.517 63.158 15.27 0.00 34.80 2.24
1722 2038 4.704833 GGGCTGGTCTTGCGCTCA 62.705 66.667 9.73 0.00 39.74 4.26
1788 2104 4.530857 GCGGTGGTCTGGATCGGG 62.531 72.222 0.00 0.00 0.00 5.14
1830 2146 3.689309 GGCACGTAGTAGTAGAAGGTC 57.311 52.381 0.00 0.00 41.61 3.85
1898 2214 0.107654 GGGCTTTATCGTGAGGCTGT 60.108 55.000 0.00 0.00 38.40 4.40
1935 2251 2.024871 CTGCCCGAGTCGACGATC 59.975 66.667 15.64 2.01 35.09 3.69
1947 2263 4.830765 TACGCGATGGTGCTGCCC 62.831 66.667 15.93 0.00 36.04 5.36
2048 2364 4.870305 CGAAGCACAGCTCGTAGT 57.130 55.556 0.00 0.00 38.25 2.73
2175 2491 2.513204 CACATCAGCCCGGCTCTG 60.513 66.667 9.68 12.70 36.40 3.35
2178 2494 3.005539 AGACACATCAGCCCGGCT 61.006 61.111 5.94 5.94 40.77 5.52
2232 2548 1.134401 ACGTTGCCGATGATGGAGATT 60.134 47.619 0.00 0.00 37.88 2.40
2331 2647 1.796253 CGTGCTTGCAATTGCGATCAT 60.796 47.619 23.28 0.00 45.83 2.45
2337 2653 2.050477 AAGTACGTGCTTGCAATTGC 57.950 45.000 23.69 23.69 42.50 3.56
2371 2687 3.716918 GCGTTTTCCAATTTTCGTTTTGC 59.283 39.130 0.00 0.00 0.00 3.68
2377 2693 0.088858 CGCGCGTTTTCCAATTTTCG 59.911 50.000 24.19 0.00 0.00 3.46
2384 2700 3.399770 CTCGTCGCGCGTTTTCCA 61.400 61.111 30.98 6.01 42.13 3.53
2385 2701 4.130281 CCTCGTCGCGCGTTTTCC 62.130 66.667 30.98 12.34 42.13 3.13
2393 2709 2.468040 GTCAAAGATTATCCTCGTCGCG 59.532 50.000 0.00 0.00 0.00 5.87
2394 2710 3.707793 AGTCAAAGATTATCCTCGTCGC 58.292 45.455 0.00 0.00 0.00 5.19
2395 2711 5.343593 GCATAGTCAAAGATTATCCTCGTCG 59.656 44.000 0.00 0.00 0.00 5.12
2396 2712 6.451393 AGCATAGTCAAAGATTATCCTCGTC 58.549 40.000 0.00 0.00 0.00 4.20
2397 2713 6.266558 AGAGCATAGTCAAAGATTATCCTCGT 59.733 38.462 0.00 0.00 28.58 4.18
2419 2735 8.200792 ACTATAAGTACTGCTCCAAATTGAGAG 58.799 37.037 0.00 0.93 34.11 3.20
2421 2737 8.723942 AACTATAAGTACTGCTCCAAATTGAG 57.276 34.615 0.00 0.00 35.40 3.02
2429 2745 8.255905 TCCAAGTAAAACTATAAGTACTGCTCC 58.744 37.037 0.00 0.00 0.00 4.70
2430 2746 9.649167 TTCCAAGTAAAACTATAAGTACTGCTC 57.351 33.333 0.00 0.00 0.00 4.26
2466 2801 0.601046 TATGTGCGCTGCTAGGCATC 60.601 55.000 9.73 0.36 41.83 3.91
2467 2802 0.035881 ATATGTGCGCTGCTAGGCAT 59.964 50.000 9.73 4.49 41.83 4.40
2470 2805 3.236632 TCATATATGTGCGCTGCTAGG 57.763 47.619 9.73 0.00 0.00 3.02
2476 2811 7.969536 ACTTAGATTTTCATATATGTGCGCT 57.030 32.000 9.73 7.58 0.00 5.92
2521 3824 3.371063 TGACGAGGGACGCTGGTC 61.371 66.667 22.52 22.52 46.94 4.02
2531 3834 0.531200 GTGTAGGGAAGGTGACGAGG 59.469 60.000 0.00 0.00 0.00 4.63
2543 3846 2.421952 CCAGAATCATGTGGGTGTAGGG 60.422 54.545 0.00 0.00 36.34 3.53
2548 3851 2.094675 GGTTCCAGAATCATGTGGGTG 58.905 52.381 0.59 0.00 40.38 4.61
2549 3852 1.710244 TGGTTCCAGAATCATGTGGGT 59.290 47.619 0.59 0.00 40.38 4.51
2583 3886 7.486551 TCGTCGTTTTTCAATTTGACATTTTCT 59.513 29.630 0.00 0.00 0.00 2.52
2585 3888 7.253950 CCTCGTCGTTTTTCAATTTGACATTTT 60.254 33.333 0.00 0.00 0.00 1.82
2590 3893 4.839796 TCCTCGTCGTTTTTCAATTTGAC 58.160 39.130 0.00 0.00 0.00 3.18
2619 3922 7.757941 ATATTAGTTTACGGAGGGAGTACTC 57.242 40.000 14.87 14.87 36.76 2.59
2620 3923 9.646522 TTTATATTAGTTTACGGAGGGAGTACT 57.353 33.333 0.00 0.00 0.00 2.73
2623 3926 8.985922 ACTTTTATATTAGTTTACGGAGGGAGT 58.014 33.333 0.00 0.00 0.00 3.85
2624 3927 9.257651 CACTTTTATATTAGTTTACGGAGGGAG 57.742 37.037 0.00 0.00 0.00 4.30
2625 3928 8.761689 ACACTTTTATATTAGTTTACGGAGGGA 58.238 33.333 0.00 0.00 0.00 4.20
2626 3929 8.953368 ACACTTTTATATTAGTTTACGGAGGG 57.047 34.615 0.00 0.00 0.00 4.30
2654 3957 8.818057 GCGTTTACATCATTAAAGTAGTGATCT 58.182 33.333 0.00 0.00 33.51 2.75
2655 3958 8.818057 AGCGTTTACATCATTAAAGTAGTGATC 58.182 33.333 0.00 0.00 33.51 2.92
2656 3959 8.718102 AGCGTTTACATCATTAAAGTAGTGAT 57.282 30.769 0.00 0.00 35.79 3.06
2657 3960 8.033038 AGAGCGTTTACATCATTAAAGTAGTGA 58.967 33.333 0.00 0.00 0.00 3.41
2658 3961 8.186178 AGAGCGTTTACATCATTAAAGTAGTG 57.814 34.615 0.00 0.00 0.00 2.74
2659 3962 8.773404 AAGAGCGTTTACATCATTAAAGTAGT 57.227 30.769 0.00 0.00 0.00 2.73
2675 3978 9.968870 CCTCTCTAAACTAATATAAGAGCGTTT 57.031 33.333 0.00 0.00 34.89 3.60
2676 3979 8.578151 CCCTCTCTAAACTAATATAAGAGCGTT 58.422 37.037 0.00 0.00 34.89 4.84
2677 3980 7.943447 TCCCTCTCTAAACTAATATAAGAGCGT 59.057 37.037 0.00 0.00 34.89 5.07
2678 3981 8.338072 TCCCTCTCTAAACTAATATAAGAGCG 57.662 38.462 0.00 0.00 34.89 5.03
2679 3982 9.304335 ACTCCCTCTCTAAACTAATATAAGAGC 57.696 37.037 0.00 0.00 34.89 4.09
2695 3998 8.919145 CAAAGTGATAAATACTACTCCCTCTCT 58.081 37.037 0.00 0.00 0.00 3.10
2696 3999 7.654116 GCAAAGTGATAAATACTACTCCCTCTC 59.346 40.741 0.00 0.00 0.00 3.20
2697 4000 7.345914 AGCAAAGTGATAAATACTACTCCCTCT 59.654 37.037 0.00 0.00 0.00 3.69
2698 4001 7.501844 AGCAAAGTGATAAATACTACTCCCTC 58.498 38.462 0.00 0.00 0.00 4.30
2699 4002 7.345914 AGAGCAAAGTGATAAATACTACTCCCT 59.654 37.037 0.00 0.00 0.00 4.20
2700 4003 7.501844 AGAGCAAAGTGATAAATACTACTCCC 58.498 38.462 0.00 0.00 0.00 4.30
2744 4048 9.388506 TGCCAGAGAAAGAGAAGAAAATTATAG 57.611 33.333 0.00 0.00 0.00 1.31
2745 4049 9.388506 CTGCCAGAGAAAGAGAAGAAAATTATA 57.611 33.333 0.00 0.00 0.00 0.98
2748 4052 6.302269 TCTGCCAGAGAAAGAGAAGAAAATT 58.698 36.000 0.00 0.00 0.00 1.82
2749 4053 5.874093 TCTGCCAGAGAAAGAGAAGAAAAT 58.126 37.500 0.00 0.00 0.00 1.82
2750 4054 5.296151 TCTGCCAGAGAAAGAGAAGAAAA 57.704 39.130 0.00 0.00 0.00 2.29
2751 4055 4.963318 TCTGCCAGAGAAAGAGAAGAAA 57.037 40.909 0.00 0.00 0.00 2.52
2760 4064 2.057922 AGACCCTTTCTGCCAGAGAAA 58.942 47.619 0.00 0.00 46.52 2.52
2761 4065 1.734655 AGACCCTTTCTGCCAGAGAA 58.265 50.000 0.00 0.00 39.05 2.87
2762 4066 2.623418 TAGACCCTTTCTGCCAGAGA 57.377 50.000 0.00 0.00 35.55 3.10
2763 4067 3.703001 TTTAGACCCTTTCTGCCAGAG 57.297 47.619 0.00 0.00 35.55 3.35
2764 4068 5.191722 ACATATTTAGACCCTTTCTGCCAGA 59.808 40.000 0.00 0.00 35.55 3.86
2765 4069 5.297776 CACATATTTAGACCCTTTCTGCCAG 59.702 44.000 0.00 0.00 35.55 4.85
2766 4070 5.192927 CACATATTTAGACCCTTTCTGCCA 58.807 41.667 0.00 0.00 35.55 4.92
2771 4075 5.125367 ACCCCACATATTTAGACCCTTTC 57.875 43.478 0.00 0.00 0.00 2.62
2796 4100 1.797025 AAGAGGCACGACTAACTTGC 58.203 50.000 0.00 0.00 41.98 4.01
2803 4107 5.411781 CAATAAAGAGTAAGAGGCACGACT 58.588 41.667 0.00 0.00 0.00 4.18
2820 4124 8.450578 AGATTCATAATTGAGACGCCAATAAA 57.549 30.769 0.00 0.00 35.86 1.40
2826 4130 6.203723 AGCTTTAGATTCATAATTGAGACGCC 59.796 38.462 0.00 0.00 32.27 5.68
2848 4152 2.883386 CAACTTGCTCTTCCTGAAAGCT 59.117 45.455 12.14 0.00 36.96 3.74
2868 4172 0.037160 AGCACACACATGGATCAGCA 59.963 50.000 0.00 0.00 0.00 4.41
2878 4182 3.312146 CACACAGTTGATTAGCACACACA 59.688 43.478 0.00 0.00 0.00 3.72
2884 4188 3.483808 TGACCACACAGTTGATTAGCA 57.516 42.857 0.00 0.00 0.00 3.49
2885 4189 4.002982 TGATGACCACACAGTTGATTAGC 58.997 43.478 0.00 0.00 0.00 3.09
2886 4190 6.427853 TCTTTGATGACCACACAGTTGATTAG 59.572 38.462 0.00 0.00 0.00 1.73
2898 4204 4.022935 TGAAGCAATGTCTTTGATGACCAC 60.023 41.667 2.74 0.00 37.53 4.16
2906 4212 5.116074 GTCAATTCGTGAAGCAATGTCTTTG 59.884 40.000 0.00 0.00 38.23 2.77
2907 4213 5.009010 AGTCAATTCGTGAAGCAATGTCTTT 59.991 36.000 0.00 0.00 38.23 2.52
2912 4218 5.735892 CACATAGTCAATTCGTGAAGCAATG 59.264 40.000 0.00 0.00 38.23 2.82
2927 4233 6.413892 TGATACTTGATTTGGCACATAGTCA 58.586 36.000 0.00 0.00 39.30 3.41
2932 4238 5.126061 GGACTTGATACTTGATTTGGCACAT 59.874 40.000 0.00 0.00 39.30 3.21
2935 4241 4.661222 TGGACTTGATACTTGATTTGGCA 58.339 39.130 0.00 0.00 0.00 4.92
2953 4259 6.238869 GCTAGATGATTCATTTTCCCTTGGAC 60.239 42.308 0.00 0.00 0.00 4.02
2955 4261 5.010415 GGCTAGATGATTCATTTTCCCTTGG 59.990 44.000 0.00 0.00 0.00 3.61
2956 4262 5.010415 GGGCTAGATGATTCATTTTCCCTTG 59.990 44.000 14.69 5.31 0.00 3.61
2957 4263 5.143369 GGGCTAGATGATTCATTTTCCCTT 58.857 41.667 14.69 0.00 0.00 3.95
2959 4265 3.829026 GGGGCTAGATGATTCATTTTCCC 59.171 47.826 14.06 14.06 0.00 3.97
2961 4267 4.279420 GTGGGGGCTAGATGATTCATTTTC 59.721 45.833 0.00 0.00 0.00 2.29
2962 4268 4.218312 GTGGGGGCTAGATGATTCATTTT 58.782 43.478 0.00 0.00 0.00 1.82
2963 4269 3.205056 TGTGGGGGCTAGATGATTCATTT 59.795 43.478 0.00 0.00 0.00 2.32
2966 4272 1.891933 TGTGGGGGCTAGATGATTCA 58.108 50.000 0.00 0.00 0.00 2.57
2996 4310 1.413382 CGTCGATGCTAATGGAGAGC 58.587 55.000 0.00 0.00 40.53 4.09
3007 4321 0.179189 CTTTTCCAAGCCGTCGATGC 60.179 55.000 0.00 0.00 0.00 3.91
3008 4322 3.975992 CTTTTCCAAGCCGTCGATG 57.024 52.632 0.00 0.00 0.00 3.84
3017 4331 2.744202 ACGCATGACTAGCTTTTCCAAG 59.256 45.455 0.00 0.00 0.00 3.61
3018 4332 2.742053 GACGCATGACTAGCTTTTCCAA 59.258 45.455 0.00 0.00 0.00 3.53
3019 4333 2.028112 AGACGCATGACTAGCTTTTCCA 60.028 45.455 0.00 0.00 0.00 3.53
3020 4334 2.605366 GAGACGCATGACTAGCTTTTCC 59.395 50.000 0.00 0.00 0.00 3.13
3021 4335 3.254060 TGAGACGCATGACTAGCTTTTC 58.746 45.455 0.00 0.00 0.00 2.29
3022 4336 3.319137 TGAGACGCATGACTAGCTTTT 57.681 42.857 0.00 0.00 0.00 2.27
3023 4337 3.533606 ATGAGACGCATGACTAGCTTT 57.466 42.857 0.00 0.00 35.42 3.51
3024 4338 3.452474 GAATGAGACGCATGACTAGCTT 58.548 45.455 0.00 0.00 37.28 3.74
3025 4339 2.223923 GGAATGAGACGCATGACTAGCT 60.224 50.000 0.00 0.00 37.28 3.32
3026 4340 2.131183 GGAATGAGACGCATGACTAGC 58.869 52.381 0.00 0.00 37.28 3.42
3027 4341 3.181482 ACAGGAATGAGACGCATGACTAG 60.181 47.826 0.00 0.00 37.28 2.57
3028 4342 2.760650 ACAGGAATGAGACGCATGACTA 59.239 45.455 0.00 0.00 37.28 2.59
3029 4343 1.552337 ACAGGAATGAGACGCATGACT 59.448 47.619 0.00 0.00 37.28 3.41
3030 4344 2.015736 ACAGGAATGAGACGCATGAC 57.984 50.000 0.00 0.00 37.28 3.06
3031 4345 2.768253 AACAGGAATGAGACGCATGA 57.232 45.000 0.00 0.00 37.28 3.07
3032 4346 4.154015 TGTTAAACAGGAATGAGACGCATG 59.846 41.667 0.00 0.00 37.28 4.06
3033 4347 4.323417 TGTTAAACAGGAATGAGACGCAT 58.677 39.130 0.00 0.00 39.43 4.73
3034 4348 3.734463 TGTTAAACAGGAATGAGACGCA 58.266 40.909 0.00 0.00 0.00 5.24
3035 4349 4.742438 TTGTTAAACAGGAATGAGACGC 57.258 40.909 0.00 0.00 0.00 5.19
3036 4350 9.840427 AATTATTTGTTAAACAGGAATGAGACG 57.160 29.630 0.00 0.00 0.00 4.18
3063 4377 9.720769 AGAGAGGATTATAACGTTTTTGAAGAA 57.279 29.630 5.91 0.00 0.00 2.52
3064 4378 9.151471 CAGAGAGGATTATAACGTTTTTGAAGA 57.849 33.333 5.91 0.00 0.00 2.87
3065 4379 7.905493 GCAGAGAGGATTATAACGTTTTTGAAG 59.095 37.037 5.91 0.00 0.00 3.02
3066 4380 7.389330 TGCAGAGAGGATTATAACGTTTTTGAA 59.611 33.333 5.91 0.00 0.00 2.69
3067 4381 6.876789 TGCAGAGAGGATTATAACGTTTTTGA 59.123 34.615 5.91 0.00 0.00 2.69
3068 4382 7.072177 TGCAGAGAGGATTATAACGTTTTTG 57.928 36.000 5.91 0.00 0.00 2.44
3069 4383 7.865706 ATGCAGAGAGGATTATAACGTTTTT 57.134 32.000 5.91 0.00 0.00 1.94
3070 4384 7.552687 TGAATGCAGAGAGGATTATAACGTTTT 59.447 33.333 5.91 0.02 38.50 2.43
3071 4385 7.047891 TGAATGCAGAGAGGATTATAACGTTT 58.952 34.615 5.91 0.00 38.50 3.60
3072 4386 6.582636 TGAATGCAGAGAGGATTATAACGTT 58.417 36.000 5.88 5.88 38.50 3.99
3073 4387 6.161855 TGAATGCAGAGAGGATTATAACGT 57.838 37.500 0.00 0.00 38.50 3.99
3074 4388 8.939201 ATATGAATGCAGAGAGGATTATAACG 57.061 34.615 0.00 0.00 38.50 3.18
3080 4394 9.638176 AAGTTTTATATGAATGCAGAGAGGATT 57.362 29.630 0.00 0.00 41.38 3.01
3081 4395 9.638176 AAAGTTTTATATGAATGCAGAGAGGAT 57.362 29.630 0.00 0.00 0.00 3.24
3082 4396 9.466497 AAAAGTTTTATATGAATGCAGAGAGGA 57.534 29.630 0.00 0.00 0.00 3.71
3083 4397 9.512435 CAAAAGTTTTATATGAATGCAGAGAGG 57.488 33.333 0.00 0.00 0.00 3.69
3086 4400 9.512435 CCTCAAAAGTTTTATATGAATGCAGAG 57.488 33.333 0.00 0.00 0.00 3.35
3087 4401 7.975616 GCCTCAAAAGTTTTATATGAATGCAGA 59.024 33.333 0.00 0.00 0.00 4.26
3088 4402 7.043854 CGCCTCAAAAGTTTTATATGAATGCAG 60.044 37.037 0.00 0.00 0.00 4.41
3089 4403 6.751425 CGCCTCAAAAGTTTTATATGAATGCA 59.249 34.615 0.00 0.00 0.00 3.96
3090 4404 6.751888 ACGCCTCAAAAGTTTTATATGAATGC 59.248 34.615 0.00 0.87 0.00 3.56
3091 4405 7.253750 GCACGCCTCAAAAGTTTTATATGAATG 60.254 37.037 0.00 0.00 0.00 2.67
3092 4406 6.751888 GCACGCCTCAAAAGTTTTATATGAAT 59.248 34.615 0.00 0.00 0.00 2.57
3093 4407 6.090129 GCACGCCTCAAAAGTTTTATATGAA 58.910 36.000 0.00 0.00 0.00 2.57
3094 4408 5.392595 GGCACGCCTCAAAAGTTTTATATGA 60.393 40.000 0.00 0.00 0.00 2.15
3095 4409 4.798387 GGCACGCCTCAAAAGTTTTATATG 59.202 41.667 0.00 0.00 0.00 1.78
3096 4410 4.461081 TGGCACGCCTCAAAAGTTTTATAT 59.539 37.500 9.92 0.00 36.94 0.86
3097 4411 3.821600 TGGCACGCCTCAAAAGTTTTATA 59.178 39.130 9.92 0.00 36.94 0.98
3098 4412 2.625790 TGGCACGCCTCAAAAGTTTTAT 59.374 40.909 9.92 0.00 36.94 1.40
3099 4413 2.025155 TGGCACGCCTCAAAAGTTTTA 58.975 42.857 9.92 0.00 36.94 1.52
3100 4414 0.820871 TGGCACGCCTCAAAAGTTTT 59.179 45.000 9.92 0.00 36.94 2.43
3101 4415 0.385390 CTGGCACGCCTCAAAAGTTT 59.615 50.000 9.92 0.00 36.94 2.66
3102 4416 1.455383 CCTGGCACGCCTCAAAAGTT 61.455 55.000 9.92 0.00 36.94 2.66
3103 4417 1.898574 CCTGGCACGCCTCAAAAGT 60.899 57.895 9.92 0.00 36.94 2.66
3104 4418 0.605319 TACCTGGCACGCCTCAAAAG 60.605 55.000 9.92 0.00 36.94 2.27
3105 4419 0.605319 CTACCTGGCACGCCTCAAAA 60.605 55.000 9.92 0.00 36.94 2.44
3106 4420 1.003839 CTACCTGGCACGCCTCAAA 60.004 57.895 9.92 0.00 36.94 2.69
3107 4421 2.662596 CTACCTGGCACGCCTCAA 59.337 61.111 9.92 0.00 36.94 3.02
3108 4422 3.390521 CCTACCTGGCACGCCTCA 61.391 66.667 9.92 0.00 36.94 3.86
3109 4423 3.372554 GACCTACCTGGCACGCCTC 62.373 68.421 9.92 0.00 40.22 4.70
3110 4424 3.391382 GACCTACCTGGCACGCCT 61.391 66.667 9.92 0.00 40.22 5.52
3111 4425 2.741486 TTTGACCTACCTGGCACGCC 62.741 60.000 0.00 0.00 40.22 5.68
3112 4426 0.887387 TTTTGACCTACCTGGCACGC 60.887 55.000 0.00 0.00 40.22 5.34
3113 4427 1.535462 CTTTTTGACCTACCTGGCACG 59.465 52.381 0.00 0.00 40.22 5.34
3114 4428 1.269723 GCTTTTTGACCTACCTGGCAC 59.730 52.381 0.00 0.00 40.22 5.01
3115 4429 1.144913 AGCTTTTTGACCTACCTGGCA 59.855 47.619 0.00 0.00 40.22 4.92
3116 4430 1.911057 AGCTTTTTGACCTACCTGGC 58.089 50.000 0.00 0.00 40.22 4.85
3117 4431 2.558359 CCAAGCTTTTTGACCTACCTGG 59.442 50.000 0.00 0.00 42.93 4.45
3118 4432 2.029918 GCCAAGCTTTTTGACCTACCTG 60.030 50.000 0.00 0.00 0.00 4.00
3119 4433 2.158460 AGCCAAGCTTTTTGACCTACCT 60.158 45.455 0.00 0.00 33.89 3.08
3120 4434 2.229062 GAGCCAAGCTTTTTGACCTACC 59.771 50.000 0.00 0.00 39.88 3.18
3121 4435 3.149981 AGAGCCAAGCTTTTTGACCTAC 58.850 45.455 0.00 0.00 39.88 3.18
3122 4436 3.073062 AGAGAGCCAAGCTTTTTGACCTA 59.927 43.478 0.00 0.00 39.88 3.08
3123 4437 2.158549 AGAGAGCCAAGCTTTTTGACCT 60.159 45.455 0.00 0.00 39.88 3.85
3124 4438 2.234143 AGAGAGCCAAGCTTTTTGACC 58.766 47.619 0.00 0.00 39.88 4.02
3125 4439 3.998099 AAGAGAGCCAAGCTTTTTGAC 57.002 42.857 0.00 0.00 39.88 3.18
3126 4440 3.953612 TCAAAGAGAGCCAAGCTTTTTGA 59.046 39.130 13.55 13.55 39.88 2.69
3127 4441 4.311816 TCAAAGAGAGCCAAGCTTTTTG 57.688 40.909 10.05 10.05 39.88 2.44
3128 4442 4.160252 TGTTCAAAGAGAGCCAAGCTTTTT 59.840 37.500 0.00 0.00 39.88 1.94
3129 4443 3.701040 TGTTCAAAGAGAGCCAAGCTTTT 59.299 39.130 0.00 0.00 39.88 2.27
3130 4444 3.290710 TGTTCAAAGAGAGCCAAGCTTT 58.709 40.909 0.00 0.00 39.88 3.51
3131 4445 2.936202 TGTTCAAAGAGAGCCAAGCTT 58.064 42.857 0.00 0.00 39.88 3.74
3132 4446 2.645838 TGTTCAAAGAGAGCCAAGCT 57.354 45.000 0.00 0.00 43.88 3.74
3133 4447 2.816087 TGATGTTCAAAGAGAGCCAAGC 59.184 45.455 0.00 0.00 0.00 4.01
3134 4448 4.070716 AGTGATGTTCAAAGAGAGCCAAG 58.929 43.478 0.00 0.00 0.00 3.61
3135 4449 4.090761 AGTGATGTTCAAAGAGAGCCAA 57.909 40.909 0.00 0.00 0.00 4.52
3136 4450 3.777106 AGTGATGTTCAAAGAGAGCCA 57.223 42.857 0.00 0.00 0.00 4.75
3137 4451 3.620821 GCTAGTGATGTTCAAAGAGAGCC 59.379 47.826 0.00 0.00 0.00 4.70
3138 4452 3.620821 GGCTAGTGATGTTCAAAGAGAGC 59.379 47.826 0.00 0.00 0.00 4.09
3139 4453 4.825422 TGGCTAGTGATGTTCAAAGAGAG 58.175 43.478 0.00 0.00 0.00 3.20
3140 4454 4.890158 TGGCTAGTGATGTTCAAAGAGA 57.110 40.909 0.00 0.00 0.00 3.10
3141 4455 5.065731 GGATTGGCTAGTGATGTTCAAAGAG 59.934 44.000 0.00 0.00 0.00 2.85
3142 4456 4.943705 GGATTGGCTAGTGATGTTCAAAGA 59.056 41.667 0.00 0.00 0.00 2.52
3143 4457 4.096984 GGGATTGGCTAGTGATGTTCAAAG 59.903 45.833 0.00 0.00 0.00 2.77
3144 4458 4.016444 GGGATTGGCTAGTGATGTTCAAA 58.984 43.478 0.00 0.00 0.00 2.69
3145 4459 3.266772 AGGGATTGGCTAGTGATGTTCAA 59.733 43.478 0.00 0.00 0.00 2.69
3146 4460 2.846206 AGGGATTGGCTAGTGATGTTCA 59.154 45.455 0.00 0.00 0.00 3.18
3147 4461 3.567478 AGGGATTGGCTAGTGATGTTC 57.433 47.619 0.00 0.00 0.00 3.18
3148 4462 4.322057 AAAGGGATTGGCTAGTGATGTT 57.678 40.909 0.00 0.00 0.00 2.71
3149 4463 5.450818 TTAAAGGGATTGGCTAGTGATGT 57.549 39.130 0.00 0.00 0.00 3.06
3150 4464 5.067805 GGTTTAAAGGGATTGGCTAGTGATG 59.932 44.000 0.00 0.00 0.00 3.07
3151 4465 5.201243 GGTTTAAAGGGATTGGCTAGTGAT 58.799 41.667 0.00 0.00 0.00 3.06
3152 4466 4.595986 GGTTTAAAGGGATTGGCTAGTGA 58.404 43.478 0.00 0.00 0.00 3.41
3153 4467 3.377172 CGGTTTAAAGGGATTGGCTAGTG 59.623 47.826 0.00 0.00 0.00 2.74
3154 4468 3.617284 CGGTTTAAAGGGATTGGCTAGT 58.383 45.455 0.00 0.00 0.00 2.57
3155 4469 2.357952 GCGGTTTAAAGGGATTGGCTAG 59.642 50.000 0.00 0.00 0.00 3.42
3156 4470 2.291024 TGCGGTTTAAAGGGATTGGCTA 60.291 45.455 0.00 0.00 0.00 3.93
3157 4471 1.182667 GCGGTTTAAAGGGATTGGCT 58.817 50.000 0.00 0.00 0.00 4.75
3158 4472 0.892063 TGCGGTTTAAAGGGATTGGC 59.108 50.000 0.00 0.00 0.00 4.52
3159 4473 4.401202 AGTTATGCGGTTTAAAGGGATTGG 59.599 41.667 0.00 0.00 0.00 3.16
3160 4474 5.449999 GGAGTTATGCGGTTTAAAGGGATTG 60.450 44.000 0.00 0.00 0.00 2.67
3161 4475 4.643334 GGAGTTATGCGGTTTAAAGGGATT 59.357 41.667 0.00 0.00 0.00 3.01
3162 4476 4.079958 AGGAGTTATGCGGTTTAAAGGGAT 60.080 41.667 0.00 0.00 0.00 3.85
3163 4477 3.264964 AGGAGTTATGCGGTTTAAAGGGA 59.735 43.478 0.00 0.00 0.00 4.20
3164 4478 3.617284 AGGAGTTATGCGGTTTAAAGGG 58.383 45.455 0.00 0.00 0.00 3.95
3165 4479 8.441312 TTTATAGGAGTTATGCGGTTTAAAGG 57.559 34.615 0.00 0.00 0.00 3.11
3170 4484 8.194769 CCAAAATTTATAGGAGTTATGCGGTTT 58.805 33.333 0.00 0.00 0.00 3.27
3171 4485 7.340999 ACCAAAATTTATAGGAGTTATGCGGTT 59.659 33.333 10.26 0.00 0.00 4.44
3172 4486 6.831868 ACCAAAATTTATAGGAGTTATGCGGT 59.168 34.615 10.26 0.00 0.00 5.68
3173 4487 7.272037 ACCAAAATTTATAGGAGTTATGCGG 57.728 36.000 10.26 0.00 0.00 5.69
3174 4488 9.581099 AAAACCAAAATTTATAGGAGTTATGCG 57.419 29.630 10.26 0.00 0.00 4.73
3195 4509 5.066893 AGGTTCGGTTTAACTCTTCAAAACC 59.933 40.000 6.20 6.20 45.64 3.27
3196 4510 6.127810 AGGTTCGGTTTAACTCTTCAAAAC 57.872 37.500 0.00 0.00 33.37 2.43
3197 4511 7.201723 GGTTAGGTTCGGTTTAACTCTTCAAAA 60.202 37.037 0.00 0.00 0.00 2.44
3198 4512 6.260714 GGTTAGGTTCGGTTTAACTCTTCAAA 59.739 38.462 0.00 0.00 0.00 2.69
3199 4513 5.759763 GGTTAGGTTCGGTTTAACTCTTCAA 59.240 40.000 0.00 0.00 0.00 2.69
3200 4514 5.299949 GGTTAGGTTCGGTTTAACTCTTCA 58.700 41.667 0.00 0.00 0.00 3.02
3201 4515 4.386954 CGGTTAGGTTCGGTTTAACTCTTC 59.613 45.833 0.00 0.00 0.00 2.87
3202 4516 4.039124 TCGGTTAGGTTCGGTTTAACTCTT 59.961 41.667 0.00 0.00 0.00 2.85
3203 4517 3.573967 TCGGTTAGGTTCGGTTTAACTCT 59.426 43.478 0.00 0.00 0.00 3.24
3204 4518 3.913089 TCGGTTAGGTTCGGTTTAACTC 58.087 45.455 0.00 0.00 0.00 3.01
3205 4519 4.058124 GTTCGGTTAGGTTCGGTTTAACT 58.942 43.478 0.00 0.00 0.00 2.24
3206 4520 3.186409 GGTTCGGTTAGGTTCGGTTTAAC 59.814 47.826 0.00 0.00 0.00 2.01
3207 4521 3.181461 TGGTTCGGTTAGGTTCGGTTTAA 60.181 43.478 0.00 0.00 0.00 1.52
3208 4522 2.366916 TGGTTCGGTTAGGTTCGGTTTA 59.633 45.455 0.00 0.00 0.00 2.01
3209 4523 1.140652 TGGTTCGGTTAGGTTCGGTTT 59.859 47.619 0.00 0.00 0.00 3.27
3210 4524 0.758123 TGGTTCGGTTAGGTTCGGTT 59.242 50.000 0.00 0.00 0.00 4.44
3211 4525 0.978907 ATGGTTCGGTTAGGTTCGGT 59.021 50.000 0.00 0.00 0.00 4.69
3212 4526 2.103537 AATGGTTCGGTTAGGTTCGG 57.896 50.000 0.00 0.00 0.00 4.30
3213 4527 4.690122 AGATAATGGTTCGGTTAGGTTCG 58.310 43.478 0.00 0.00 0.00 3.95
3214 4528 6.814043 ACTAGATAATGGTTCGGTTAGGTTC 58.186 40.000 0.00 0.00 0.00 3.62
3215 4529 6.803366 ACTAGATAATGGTTCGGTTAGGTT 57.197 37.500 0.00 0.00 0.00 3.50
3216 4530 6.803366 AACTAGATAATGGTTCGGTTAGGT 57.197 37.500 0.00 0.00 0.00 3.08
3217 4531 9.038803 GTTAAACTAGATAATGGTTCGGTTAGG 57.961 37.037 0.00 0.00 30.13 2.69
3218 4532 9.813446 AGTTAAACTAGATAATGGTTCGGTTAG 57.187 33.333 0.00 0.00 30.13 2.34
3219 4533 9.807649 GAGTTAAACTAGATAATGGTTCGGTTA 57.192 33.333 0.00 0.00 30.13 2.85
3220 4534 8.316214 TGAGTTAAACTAGATAATGGTTCGGTT 58.684 33.333 0.00 0.00 30.13 4.44
3221 4535 7.844009 TGAGTTAAACTAGATAATGGTTCGGT 58.156 34.615 0.00 0.00 30.13 4.69
3222 4536 8.712285 TTGAGTTAAACTAGATAATGGTTCGG 57.288 34.615 0.00 0.00 30.13 4.30
3252 4566 1.614413 TGACCCGCCGCTTAAATTTTT 59.386 42.857 0.00 0.00 0.00 1.94
3253 4567 1.249407 TGACCCGCCGCTTAAATTTT 58.751 45.000 0.00 0.00 0.00 1.82
3254 4568 1.068125 GTTGACCCGCCGCTTAAATTT 60.068 47.619 0.00 0.00 0.00 1.82
3255 4569 0.524414 GTTGACCCGCCGCTTAAATT 59.476 50.000 0.00 0.00 0.00 1.82
3256 4570 1.641123 CGTTGACCCGCCGCTTAAAT 61.641 55.000 0.00 0.00 0.00 1.40
3257 4571 2.319096 CGTTGACCCGCCGCTTAAA 61.319 57.895 0.00 0.00 0.00 1.52
3258 4572 2.739287 CGTTGACCCGCCGCTTAA 60.739 61.111 0.00 0.00 0.00 1.85
3259 4573 4.745751 CCGTTGACCCGCCGCTTA 62.746 66.667 0.00 0.00 0.00 3.09
3264 4578 1.880819 TAAGAGTCCGTTGACCCGCC 61.881 60.000 0.00 0.00 42.81 6.13
3265 4579 0.735287 GTAAGAGTCCGTTGACCCGC 60.735 60.000 0.00 0.00 42.81 6.13
3266 4580 0.599558 TGTAAGAGTCCGTTGACCCG 59.400 55.000 0.00 0.00 42.81 5.28
3267 4581 3.329929 AATGTAAGAGTCCGTTGACCC 57.670 47.619 0.00 0.00 42.81 4.46
3268 4582 4.312443 TCAAATGTAAGAGTCCGTTGACC 58.688 43.478 0.00 0.00 42.81 4.02
3269 4583 4.989168 ACTCAAATGTAAGAGTCCGTTGAC 59.011 41.667 0.00 0.00 40.96 3.18
3270 4584 4.988540 CACTCAAATGTAAGAGTCCGTTGA 59.011 41.667 0.00 0.00 42.87 3.18
3271 4585 4.152402 CCACTCAAATGTAAGAGTCCGTTG 59.848 45.833 0.00 0.00 42.87 4.10
3272 4586 4.315803 CCACTCAAATGTAAGAGTCCGTT 58.684 43.478 0.00 0.00 42.87 4.44
3273 4587 3.864921 GCCACTCAAATGTAAGAGTCCGT 60.865 47.826 0.00 0.00 42.87 4.69
3274 4588 2.673368 GCCACTCAAATGTAAGAGTCCG 59.327 50.000 0.00 0.00 42.87 4.79
3275 4589 3.010420 GGCCACTCAAATGTAAGAGTCC 58.990 50.000 0.00 0.00 42.87 3.85
3276 4590 2.673368 CGGCCACTCAAATGTAAGAGTC 59.327 50.000 2.24 0.00 42.87 3.36
3277 4591 2.038557 ACGGCCACTCAAATGTAAGAGT 59.961 45.455 2.24 0.00 45.46 3.24
3278 4592 2.699954 ACGGCCACTCAAATGTAAGAG 58.300 47.619 2.24 0.00 37.87 2.85
3279 4593 2.851263 ACGGCCACTCAAATGTAAGA 57.149 45.000 2.24 0.00 0.00 2.10
3280 4594 2.351726 GCTACGGCCACTCAAATGTAAG 59.648 50.000 2.24 0.00 0.00 2.34
3281 4595 2.352388 GCTACGGCCACTCAAATGTAA 58.648 47.619 2.24 0.00 0.00 2.41
3282 4596 2.018542 GCTACGGCCACTCAAATGTA 57.981 50.000 2.24 0.00 0.00 2.29
3283 4597 2.854522 GCTACGGCCACTCAAATGT 58.145 52.632 2.24 0.00 0.00 2.71
3294 4608 2.202756 CCGAGACTTGGCTACGGC 60.203 66.667 0.00 0.00 37.32 5.68
3295 4609 1.392710 ATCCCGAGACTTGGCTACGG 61.393 60.000 2.75 0.00 42.67 4.02
3296 4610 1.315690 TATCCCGAGACTTGGCTACG 58.684 55.000 2.75 0.00 0.00 3.51
3297 4611 4.308265 GAATTATCCCGAGACTTGGCTAC 58.692 47.826 2.75 0.00 0.00 3.58
3298 4612 3.323979 GGAATTATCCCGAGACTTGGCTA 59.676 47.826 2.75 0.00 40.10 3.93
3299 4613 2.104963 GGAATTATCCCGAGACTTGGCT 59.895 50.000 2.75 0.00 40.10 4.75
3300 4614 2.495084 GGAATTATCCCGAGACTTGGC 58.505 52.381 2.75 0.00 40.10 4.52
3309 4623 0.605589 GAAGGGCCGGAATTATCCCG 60.606 60.000 5.05 0.00 43.37 5.14
3310 4624 0.251209 GGAAGGGCCGGAATTATCCC 60.251 60.000 5.05 4.69 43.37 3.85
3311 4625 0.251209 GGGAAGGGCCGGAATTATCC 60.251 60.000 5.05 5.32 42.80 2.59
3312 4626 0.771755 AGGGAAGGGCCGGAATTATC 59.228 55.000 5.05 0.00 37.63 1.75
3313 4627 0.771755 GAGGGAAGGGCCGGAATTAT 59.228 55.000 5.05 0.00 37.63 1.28
3314 4628 0.622154 TGAGGGAAGGGCCGGAATTA 60.622 55.000 5.05 0.00 37.63 1.40
3315 4629 1.289244 ATGAGGGAAGGGCCGGAATT 61.289 55.000 5.05 0.00 37.63 2.17
3316 4630 1.697754 ATGAGGGAAGGGCCGGAAT 60.698 57.895 5.05 0.00 37.63 3.01
3317 4631 2.286121 ATGAGGGAAGGGCCGGAA 60.286 61.111 5.05 0.00 37.63 4.30


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.