Multiple sequence alignment - TraesCS5D01G461700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5D01G461700 chr5D 100.000 3092 0 0 1 3092 505738024 505741115 0.000000e+00 5710
1 TraesCS5D01G461700 chr5D 81.021 1586 246 35 794 2367 505935818 505934276 0.000000e+00 1210
2 TraesCS5D01G461700 chr5D 84.829 1081 148 11 1040 2112 505779701 505780773 0.000000e+00 1074
3 TraesCS5D01G461700 chr5D 92.162 370 27 2 89 456 548078101 548078470 3.530000e-144 521
4 TraesCS5D01G461700 chr5A 90.096 2393 156 29 714 3092 633109445 633111770 0.000000e+00 3031
5 TraesCS5D01G461700 chr5A 91.457 2189 104 35 461 2613 633049289 633051430 0.000000e+00 2929
6 TraesCS5D01G461700 chr5A 79.956 1352 213 39 1028 2368 633754613 633753309 0.000000e+00 942
7 TraesCS5D01G461700 chr5A 82.212 1085 170 16 1040 2112 633149361 633150434 0.000000e+00 913
8 TraesCS5D01G461700 chr5A 83.266 496 32 16 2596 3091 633051591 633052035 2.870000e-110 409
9 TraesCS5D01G461700 chr5B 91.419 2051 106 19 490 2485 635767316 635769351 0.000000e+00 2748
10 TraesCS5D01G461700 chr5B 83.289 1131 164 22 995 2113 635776818 635777935 0.000000e+00 1018
11 TraesCS5D01G461700 chr5B 81.032 1318 191 36 1007 2313 636541519 636540250 0.000000e+00 994
12 TraesCS5D01G461700 chr5B 80.624 609 99 14 1037 1640 636441180 636440586 1.310000e-123 453
13 TraesCS5D01G461700 chr5B 95.402 174 7 1 2764 2937 635769350 635769522 3.040000e-70 276
14 TraesCS5D01G461700 chr5B 95.798 119 5 0 2974 3092 635769520 635769638 3.150000e-45 193
15 TraesCS5D01G461700 chr3D 93.421 380 20 4 85 460 562467277 562467655 2.690000e-155 558
16 TraesCS5D01G461700 chr7D 93.225 369 22 3 94 460 34153369 34153002 9.750000e-150 540
17 TraesCS5D01G461700 chr7D 92.533 375 26 2 89 461 603152935 603152561 1.260000e-148 536
18 TraesCS5D01G461700 chr7D 92.703 370 24 2 90 456 495330196 495329827 5.870000e-147 531
19 TraesCS5D01G461700 chr6D 93.169 366 22 3 93 456 302037906 302038270 4.540000e-148 534
20 TraesCS5D01G461700 chr6D 93.151 365 23 2 94 456 373279115 373278751 4.540000e-148 534
21 TraesCS5D01G461700 chr2D 92.935 368 24 2 91 456 624267292 624267659 4.540000e-148 534
22 TraesCS5D01G461700 chr7A 92.703 370 25 2 93 460 717820761 717821130 1.630000e-147 532


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5D01G461700 chr5D 505738024 505741115 3091 False 5710.000000 5710 100.000000 1 3092 1 chr5D.!!$F1 3091
1 TraesCS5D01G461700 chr5D 505934276 505935818 1542 True 1210.000000 1210 81.021000 794 2367 1 chr5D.!!$R1 1573
2 TraesCS5D01G461700 chr5D 505779701 505780773 1072 False 1074.000000 1074 84.829000 1040 2112 1 chr5D.!!$F2 1072
3 TraesCS5D01G461700 chr5A 633109445 633111770 2325 False 3031.000000 3031 90.096000 714 3092 1 chr5A.!!$F1 2378
4 TraesCS5D01G461700 chr5A 633049289 633052035 2746 False 1669.000000 2929 87.361500 461 3091 2 chr5A.!!$F3 2630
5 TraesCS5D01G461700 chr5A 633753309 633754613 1304 True 942.000000 942 79.956000 1028 2368 1 chr5A.!!$R1 1340
6 TraesCS5D01G461700 chr5A 633149361 633150434 1073 False 913.000000 913 82.212000 1040 2112 1 chr5A.!!$F2 1072
7 TraesCS5D01G461700 chr5B 635767316 635769638 2322 False 1072.333333 2748 94.206333 490 3092 3 chr5B.!!$F2 2602
8 TraesCS5D01G461700 chr5B 635776818 635777935 1117 False 1018.000000 1018 83.289000 995 2113 1 chr5B.!!$F1 1118
9 TraesCS5D01G461700 chr5B 636540250 636541519 1269 True 994.000000 994 81.032000 1007 2313 1 chr5B.!!$R2 1306
10 TraesCS5D01G461700 chr5B 636440586 636441180 594 True 453.000000 453 80.624000 1037 1640 1 chr5B.!!$R1 603

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
418 419 0.025384 GCACGGAAATACGCGGTAAC 59.975 55.0 12.47 0.00 37.37 2.50 F
420 421 0.246086 ACGGAAATACGCGGTAACCA 59.754 50.0 12.47 0.00 37.37 3.67 F
480 481 0.249489 CATGGACCCGAAGATCGTCC 60.249 60.0 9.17 9.17 38.40 4.79 F
900 954 0.512952 CGCTGGGTATTAATGCGCTC 59.487 55.0 18.76 11.04 40.15 5.03 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1329 1398 0.037605 ACCGACTGGAATCGTTGGAC 60.038 55.000 3.57 0.0 40.59 4.02 R
1998 2081 1.531602 GAAGCCTTGGGTTGCCACT 60.532 57.895 8.95 0.0 0.00 4.00 R
2076 2159 1.734465 GCTGCTCATGCTTTACGAAGT 59.266 47.619 0.00 0.0 42.35 3.01 R
2812 3086 0.810031 CCGAATGGCTTGGAGGTACG 60.810 60.000 0.00 0.0 0.00 3.67 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 1.512926 CAAGTTCGCCTTGTGCTACT 58.487 50.000 6.52 0.00 44.64 2.57
25 26 1.195448 CAAGTTCGCCTTGTGCTACTG 59.805 52.381 6.52 0.00 44.64 2.74
26 27 0.320771 AGTTCGCCTTGTGCTACTGG 60.321 55.000 0.00 0.00 38.05 4.00
27 28 1.003839 TTCGCCTTGTGCTACTGGG 60.004 57.895 0.00 0.00 38.05 4.45
28 29 1.476845 TTCGCCTTGTGCTACTGGGA 61.477 55.000 0.00 0.00 38.05 4.37
29 30 1.448540 CGCCTTGTGCTACTGGGAG 60.449 63.158 0.00 0.00 38.05 4.30
30 31 1.746991 GCCTTGTGCTACTGGGAGC 60.747 63.158 0.00 0.00 43.16 4.70
54 55 4.799824 CGGCCTTGGCGCAAATGG 62.800 66.667 10.83 9.20 45.68 3.16
55 56 3.381136 GGCCTTGGCGCAAATGGA 61.381 61.111 10.83 0.00 0.00 3.41
56 57 2.182537 GCCTTGGCGCAAATGGAG 59.817 61.111 10.83 0.00 0.00 3.86
57 58 2.887360 CCTTGGCGCAAATGGAGG 59.113 61.111 10.83 0.00 0.00 4.30
58 59 1.978617 CCTTGGCGCAAATGGAGGT 60.979 57.895 10.83 0.00 0.00 3.85
59 60 1.213537 CTTGGCGCAAATGGAGGTG 59.786 57.895 10.83 0.00 0.00 4.00
60 61 2.216750 CTTGGCGCAAATGGAGGTGG 62.217 60.000 10.83 0.00 0.00 4.61
61 62 2.361104 GGCGCAAATGGAGGTGGA 60.361 61.111 10.83 0.00 0.00 4.02
62 63 2.409870 GGCGCAAATGGAGGTGGAG 61.410 63.158 10.83 0.00 0.00 3.86
63 64 1.377202 GCGCAAATGGAGGTGGAGA 60.377 57.895 0.30 0.00 0.00 3.71
64 65 0.960364 GCGCAAATGGAGGTGGAGAA 60.960 55.000 0.30 0.00 0.00 2.87
65 66 0.804989 CGCAAATGGAGGTGGAGAAC 59.195 55.000 0.00 0.00 0.00 3.01
66 67 1.881925 CGCAAATGGAGGTGGAGAACA 60.882 52.381 0.00 0.00 0.00 3.18
67 68 2.450476 GCAAATGGAGGTGGAGAACAT 58.550 47.619 0.00 0.00 0.00 2.71
68 69 2.165030 GCAAATGGAGGTGGAGAACATG 59.835 50.000 0.00 0.00 0.00 3.21
69 70 3.689347 CAAATGGAGGTGGAGAACATGA 58.311 45.455 0.00 0.00 0.00 3.07
70 71 4.081406 CAAATGGAGGTGGAGAACATGAA 58.919 43.478 0.00 0.00 0.00 2.57
71 72 2.859165 TGGAGGTGGAGAACATGAAC 57.141 50.000 0.00 0.00 0.00 3.18
72 73 1.001974 TGGAGGTGGAGAACATGAACG 59.998 52.381 0.00 0.00 0.00 3.95
73 74 1.079503 GAGGTGGAGAACATGAACGC 58.920 55.000 0.00 0.00 0.00 4.84
74 75 0.321653 AGGTGGAGAACATGAACGCC 60.322 55.000 0.00 4.73 0.00 5.68
75 76 0.605319 GGTGGAGAACATGAACGCCA 60.605 55.000 0.00 7.48 33.96 5.69
76 77 0.517316 GTGGAGAACATGAACGCCAC 59.483 55.000 23.31 23.31 45.84 5.01
77 78 0.948623 TGGAGAACATGAACGCCACG 60.949 55.000 0.00 0.00 31.64 4.94
78 79 1.635663 GGAGAACATGAACGCCACGG 61.636 60.000 0.00 0.00 0.00 4.94
79 80 0.949105 GAGAACATGAACGCCACGGT 60.949 55.000 0.00 0.00 0.00 4.83
80 81 1.206578 GAACATGAACGCCACGGTG 59.793 57.895 0.00 0.00 0.00 4.94
81 82 2.780149 GAACATGAACGCCACGGTGC 62.780 60.000 0.00 0.00 0.00 5.01
82 83 4.101790 CATGAACGCCACGGTGCC 62.102 66.667 1.68 0.00 0.00 5.01
90 91 4.802051 CCACGGTGCCCCTCATGG 62.802 72.222 1.68 0.00 0.00 3.66
91 92 3.716195 CACGGTGCCCCTCATGGA 61.716 66.667 0.00 0.00 35.39 3.41
92 93 3.717294 ACGGTGCCCCTCATGGAC 61.717 66.667 0.00 0.00 35.39 4.02
93 94 4.489771 CGGTGCCCCTCATGGACC 62.490 72.222 0.00 0.00 35.39 4.46
94 95 3.338250 GGTGCCCCTCATGGACCA 61.338 66.667 0.00 0.00 35.39 4.02
95 96 2.763215 GTGCCCCTCATGGACCAA 59.237 61.111 0.00 0.00 35.39 3.67
96 97 1.379044 GTGCCCCTCATGGACCAAG 60.379 63.158 0.00 0.00 35.39 3.61
97 98 2.276740 GCCCCTCATGGACCAAGG 59.723 66.667 0.00 0.96 35.39 3.61
98 99 2.616458 GCCCCTCATGGACCAAGGT 61.616 63.158 10.73 0.00 35.39 3.50
99 100 2.087248 CCCCTCATGGACCAAGGTT 58.913 57.895 10.73 0.00 35.39 3.50
100 101 0.409484 CCCCTCATGGACCAAGGTTT 59.591 55.000 10.73 0.00 35.39 3.27
101 102 1.203174 CCCCTCATGGACCAAGGTTTT 60.203 52.381 10.73 0.00 35.39 2.43
102 103 1.895131 CCCTCATGGACCAAGGTTTTG 59.105 52.381 10.73 0.00 35.39 2.44
114 115 4.839668 CAAGGTTTTGGTTACCGAATGA 57.160 40.909 4.72 0.00 40.69 2.57
115 116 4.794169 CAAGGTTTTGGTTACCGAATGAG 58.206 43.478 4.72 0.00 40.69 2.90
116 117 3.418047 AGGTTTTGGTTACCGAATGAGG 58.582 45.455 4.72 0.00 40.69 3.86
117 118 2.094906 GGTTTTGGTTACCGAATGAGGC 60.095 50.000 4.72 0.00 33.69 4.70
118 119 2.554893 GTTTTGGTTACCGAATGAGGCA 59.445 45.455 4.72 0.00 33.69 4.75
119 120 2.570415 TTGGTTACCGAATGAGGCAA 57.430 45.000 0.00 0.00 33.69 4.52
120 121 2.799126 TGGTTACCGAATGAGGCAAT 57.201 45.000 0.00 0.00 33.69 3.56
121 122 3.080300 TGGTTACCGAATGAGGCAATT 57.920 42.857 0.00 0.00 33.69 2.32
122 123 3.426615 TGGTTACCGAATGAGGCAATTT 58.573 40.909 0.00 0.00 33.69 1.82
123 124 3.829601 TGGTTACCGAATGAGGCAATTTT 59.170 39.130 0.00 0.00 33.69 1.82
124 125 5.010933 TGGTTACCGAATGAGGCAATTTTA 58.989 37.500 0.00 0.00 33.69 1.52
125 126 5.106078 TGGTTACCGAATGAGGCAATTTTAC 60.106 40.000 0.00 0.00 33.69 2.01
126 127 5.337554 GTTACCGAATGAGGCAATTTTACC 58.662 41.667 0.00 0.00 33.69 2.85
127 128 2.422127 ACCGAATGAGGCAATTTTACCG 59.578 45.455 0.00 0.00 33.69 4.02
128 129 2.680841 CCGAATGAGGCAATTTTACCGA 59.319 45.455 0.00 0.00 0.00 4.69
129 130 3.242739 CCGAATGAGGCAATTTTACCGAG 60.243 47.826 0.00 0.00 0.00 4.63
130 131 3.242739 CGAATGAGGCAATTTTACCGAGG 60.243 47.826 0.00 0.00 0.00 4.63
131 132 2.122783 TGAGGCAATTTTACCGAGGG 57.877 50.000 0.00 0.00 0.00 4.30
132 133 1.353022 TGAGGCAATTTTACCGAGGGT 59.647 47.619 0.00 0.00 40.16 4.34
133 134 1.743394 GAGGCAATTTTACCGAGGGTG 59.257 52.381 0.00 0.00 36.19 4.61
134 135 1.353022 AGGCAATTTTACCGAGGGTGA 59.647 47.619 0.00 0.00 36.19 4.02
135 136 1.471287 GGCAATTTTACCGAGGGTGAC 59.529 52.381 0.00 0.00 36.19 3.67
136 137 2.433436 GCAATTTTACCGAGGGTGACT 58.567 47.619 0.00 0.00 36.19 3.41
137 138 2.161609 GCAATTTTACCGAGGGTGACTG 59.838 50.000 0.00 0.00 36.19 3.51
138 139 2.747446 CAATTTTACCGAGGGTGACTGG 59.253 50.000 0.00 0.00 36.19 4.00
139 140 1.426751 TTTTACCGAGGGTGACTGGT 58.573 50.000 0.00 0.00 36.19 4.00
140 141 2.307496 TTTACCGAGGGTGACTGGTA 57.693 50.000 0.00 0.00 36.19 3.25
141 142 2.307496 TTACCGAGGGTGACTGGTAA 57.693 50.000 0.00 0.00 38.93 2.85
142 143 2.307496 TACCGAGGGTGACTGGTAAA 57.693 50.000 0.00 0.00 36.19 2.01
143 144 1.652947 ACCGAGGGTGACTGGTAAAT 58.347 50.000 0.00 0.00 32.98 1.40
144 145 1.278127 ACCGAGGGTGACTGGTAAATG 59.722 52.381 0.00 0.00 32.98 2.32
145 146 1.278127 CCGAGGGTGACTGGTAAATGT 59.722 52.381 0.00 0.00 0.00 2.71
146 147 2.346803 CGAGGGTGACTGGTAAATGTG 58.653 52.381 0.00 0.00 0.00 3.21
147 148 2.711542 GAGGGTGACTGGTAAATGTGG 58.288 52.381 0.00 0.00 0.00 4.17
148 149 2.039879 GAGGGTGACTGGTAAATGTGGT 59.960 50.000 0.00 0.00 0.00 4.16
149 150 2.445525 AGGGTGACTGGTAAATGTGGTT 59.554 45.455 0.00 0.00 0.00 3.67
150 151 3.653836 AGGGTGACTGGTAAATGTGGTTA 59.346 43.478 0.00 0.00 0.00 2.85
151 152 3.754850 GGGTGACTGGTAAATGTGGTTAC 59.245 47.826 0.00 0.00 33.91 2.50
195 196 7.308782 AGAGAATATTTCGAGCGAATTTTGT 57.691 32.000 6.12 0.16 33.79 2.83
196 197 8.420374 AGAGAATATTTCGAGCGAATTTTGTA 57.580 30.769 6.12 0.00 33.79 2.41
197 198 8.543774 AGAGAATATTTCGAGCGAATTTTGTAG 58.456 33.333 6.12 0.00 33.79 2.74
198 199 8.197988 AGAATATTTCGAGCGAATTTTGTAGT 57.802 30.769 6.12 0.00 33.79 2.73
199 200 8.665685 AGAATATTTCGAGCGAATTTTGTAGTT 58.334 29.630 6.12 0.00 33.79 2.24
200 201 8.601243 AATATTTCGAGCGAATTTTGTAGTTG 57.399 30.769 6.12 0.00 33.79 3.16
201 202 5.660629 TTTCGAGCGAATTTTGTAGTTGA 57.339 34.783 6.12 0.00 33.79 3.18
202 203 5.660629 TTCGAGCGAATTTTGTAGTTGAA 57.339 34.783 0.55 0.00 0.00 2.69
203 204 5.856126 TCGAGCGAATTTTGTAGTTGAAT 57.144 34.783 0.00 0.00 0.00 2.57
204 205 6.236017 TCGAGCGAATTTTGTAGTTGAATT 57.764 33.333 0.00 0.00 0.00 2.17
205 206 6.664515 TCGAGCGAATTTTGTAGTTGAATTT 58.335 32.000 0.00 0.00 0.00 1.82
206 207 7.136119 TCGAGCGAATTTTGTAGTTGAATTTT 58.864 30.769 0.00 0.00 0.00 1.82
207 208 7.112844 TCGAGCGAATTTTGTAGTTGAATTTTG 59.887 33.333 0.00 0.00 0.00 2.44
208 209 7.112844 CGAGCGAATTTTGTAGTTGAATTTTGA 59.887 33.333 0.00 0.00 0.00 2.69
209 210 8.641499 AGCGAATTTTGTAGTTGAATTTTGAA 57.359 26.923 0.00 0.00 0.00 2.69
210 211 9.260002 AGCGAATTTTGTAGTTGAATTTTGAAT 57.740 25.926 0.00 0.00 0.00 2.57
211 212 9.862585 GCGAATTTTGTAGTTGAATTTTGAATT 57.137 25.926 0.00 0.00 0.00 2.17
230 231 8.741101 TTGAATTCAAATAAGTGAATGAACGG 57.259 30.769 18.45 0.00 45.42 4.44
231 232 8.105097 TGAATTCAAATAAGTGAATGAACGGA 57.895 30.769 5.45 0.00 45.42 4.69
232 233 8.739039 TGAATTCAAATAAGTGAATGAACGGAT 58.261 29.630 5.45 0.00 45.42 4.18
237 238 8.547894 TCAAATAAGTGAATGAACGGATATTCG 58.452 33.333 0.61 0.61 36.36 3.34
238 239 8.547894 CAAATAAGTGAATGAACGGATATTCGA 58.452 33.333 11.21 0.00 36.36 3.71
239 240 8.657074 AATAAGTGAATGAACGGATATTCGAA 57.343 30.769 11.21 0.00 36.36 3.71
240 241 5.968387 AGTGAATGAACGGATATTCGAAC 57.032 39.130 11.21 4.12 36.36 3.95
241 242 4.809426 AGTGAATGAACGGATATTCGAACC 59.191 41.667 11.21 0.00 36.36 3.62
242 243 4.569162 GTGAATGAACGGATATTCGAACCA 59.431 41.667 11.21 5.09 36.36 3.67
243 244 4.808895 TGAATGAACGGATATTCGAACCAG 59.191 41.667 11.21 0.00 36.36 4.00
244 245 4.665833 ATGAACGGATATTCGAACCAGA 57.334 40.909 11.21 0.00 0.00 3.86
245 246 4.041740 TGAACGGATATTCGAACCAGAG 57.958 45.455 11.21 0.00 0.00 3.35
246 247 3.697542 TGAACGGATATTCGAACCAGAGA 59.302 43.478 11.21 0.00 0.00 3.10
247 248 3.712091 ACGGATATTCGAACCAGAGAC 57.288 47.619 11.21 0.00 0.00 3.36
248 249 2.361438 ACGGATATTCGAACCAGAGACC 59.639 50.000 11.21 0.00 0.00 3.85
249 250 2.623889 CGGATATTCGAACCAGAGACCT 59.376 50.000 0.00 0.00 0.00 3.85
250 251 3.304794 CGGATATTCGAACCAGAGACCTC 60.305 52.174 0.00 0.00 0.00 3.85
251 252 3.892588 GGATATTCGAACCAGAGACCTCT 59.107 47.826 0.00 0.00 41.37 3.69
252 253 4.022676 GGATATTCGAACCAGAGACCTCTC 60.023 50.000 0.00 0.00 43.17 3.20
253 254 2.287977 TTCGAACCAGAGACCTCTCA 57.712 50.000 5.13 0.00 45.21 3.27
254 255 2.287977 TCGAACCAGAGACCTCTCAA 57.712 50.000 5.13 0.00 45.21 3.02
255 256 2.594131 TCGAACCAGAGACCTCTCAAA 58.406 47.619 5.13 0.00 45.21 2.69
256 257 2.963101 TCGAACCAGAGACCTCTCAAAA 59.037 45.455 5.13 0.00 45.21 2.44
257 258 3.060602 CGAACCAGAGACCTCTCAAAAC 58.939 50.000 5.13 0.00 45.21 2.43
258 259 3.492656 CGAACCAGAGACCTCTCAAAACA 60.493 47.826 5.13 0.00 45.21 2.83
259 260 3.760580 ACCAGAGACCTCTCAAAACAG 57.239 47.619 5.13 0.00 45.21 3.16
260 261 2.370189 ACCAGAGACCTCTCAAAACAGG 59.630 50.000 5.13 0.00 45.21 4.00
261 262 2.634940 CCAGAGACCTCTCAAAACAGGA 59.365 50.000 5.13 0.00 45.21 3.86
262 263 3.071602 CCAGAGACCTCTCAAAACAGGAA 59.928 47.826 5.13 0.00 45.21 3.36
263 264 4.061596 CAGAGACCTCTCAAAACAGGAAC 58.938 47.826 5.13 0.00 45.21 3.62
264 265 3.970640 AGAGACCTCTCAAAACAGGAACT 59.029 43.478 5.13 0.00 45.21 3.01
265 266 5.011125 CAGAGACCTCTCAAAACAGGAACTA 59.989 44.000 5.13 0.00 45.21 2.24
266 267 5.245075 AGAGACCTCTCAAAACAGGAACTAG 59.755 44.000 5.13 0.00 45.21 2.57
267 268 4.284746 AGACCTCTCAAAACAGGAACTAGG 59.715 45.833 0.00 0.00 36.02 3.02
268 269 3.974642 ACCTCTCAAAACAGGAACTAGGT 59.025 43.478 0.00 0.00 36.02 3.08
269 270 4.412528 ACCTCTCAAAACAGGAACTAGGTT 59.587 41.667 0.00 0.00 36.02 3.50
270 271 4.757149 CCTCTCAAAACAGGAACTAGGTTG 59.243 45.833 0.00 0.00 36.02 3.77
271 272 4.134563 TCTCAAAACAGGAACTAGGTTGC 58.865 43.478 0.00 0.00 36.02 4.17
272 273 4.137543 CTCAAAACAGGAACTAGGTTGCT 58.862 43.478 0.00 0.00 44.62 3.91
273 274 5.071250 TCTCAAAACAGGAACTAGGTTGCTA 59.929 40.000 4.28 0.00 42.02 3.49
274 275 5.061179 TCAAAACAGGAACTAGGTTGCTAC 58.939 41.667 4.28 0.00 42.02 3.58
275 276 3.697619 AACAGGAACTAGGTTGCTACC 57.302 47.619 9.54 9.54 42.02 3.18
276 277 2.616524 ACAGGAACTAGGTTGCTACCA 58.383 47.619 19.71 4.87 42.02 3.25
277 278 2.976882 ACAGGAACTAGGTTGCTACCAA 59.023 45.455 19.71 0.00 42.02 3.67
278 279 3.244457 ACAGGAACTAGGTTGCTACCAAC 60.244 47.826 19.71 5.58 42.02 3.77
279 280 2.976882 AGGAACTAGGTTGCTACCAACA 59.023 45.455 19.71 3.35 45.66 3.33
280 281 3.244457 AGGAACTAGGTTGCTACCAACAC 60.244 47.826 19.71 6.56 45.66 3.32
281 282 6.596015 AGGAACTAGGTTGCTACCAACACG 62.596 50.000 19.71 5.18 45.66 4.49
285 286 4.561452 TTGCTACCAACACGCCAA 57.439 50.000 0.00 0.00 0.00 4.52
286 287 2.795165 TTGCTACCAACACGCCAAA 58.205 47.368 0.00 0.00 0.00 3.28
287 288 1.103803 TTGCTACCAACACGCCAAAA 58.896 45.000 0.00 0.00 0.00 2.44
288 289 0.382515 TGCTACCAACACGCCAAAAC 59.617 50.000 0.00 0.00 0.00 2.43
289 290 0.318360 GCTACCAACACGCCAAAACC 60.318 55.000 0.00 0.00 0.00 3.27
290 291 1.025812 CTACCAACACGCCAAAACCA 58.974 50.000 0.00 0.00 0.00 3.67
291 292 1.405821 CTACCAACACGCCAAAACCAA 59.594 47.619 0.00 0.00 0.00 3.67
292 293 0.108567 ACCAACACGCCAAAACCAAC 60.109 50.000 0.00 0.00 0.00 3.77
293 294 0.174617 CCAACACGCCAAAACCAACT 59.825 50.000 0.00 0.00 0.00 3.16
294 295 1.555477 CAACACGCCAAAACCAACTC 58.445 50.000 0.00 0.00 0.00 3.01
295 296 1.134175 CAACACGCCAAAACCAACTCT 59.866 47.619 0.00 0.00 0.00 3.24
296 297 1.021968 ACACGCCAAAACCAACTCTC 58.978 50.000 0.00 0.00 0.00 3.20
297 298 1.021202 CACGCCAAAACCAACTCTCA 58.979 50.000 0.00 0.00 0.00 3.27
298 299 1.608590 CACGCCAAAACCAACTCTCAT 59.391 47.619 0.00 0.00 0.00 2.90
299 300 1.608590 ACGCCAAAACCAACTCTCATG 59.391 47.619 0.00 0.00 0.00 3.07
300 301 1.068333 CGCCAAAACCAACTCTCATGG 60.068 52.381 0.00 0.00 43.84 3.66
301 302 1.337167 GCCAAAACCAACTCTCATGGC 60.337 52.381 0.00 0.00 44.24 4.40
302 303 1.962807 CCAAAACCAACTCTCATGGCA 59.037 47.619 0.00 0.00 41.89 4.92
303 304 2.564062 CCAAAACCAACTCTCATGGCAT 59.436 45.455 0.00 0.00 41.89 4.40
304 305 3.007182 CCAAAACCAACTCTCATGGCATT 59.993 43.478 0.00 0.00 41.89 3.56
305 306 4.220382 CCAAAACCAACTCTCATGGCATTA 59.780 41.667 0.00 0.00 41.89 1.90
306 307 5.279406 CCAAAACCAACTCTCATGGCATTAA 60.279 40.000 0.00 0.00 41.89 1.40
307 308 6.400568 CAAAACCAACTCTCATGGCATTAAT 58.599 36.000 0.00 0.00 41.89 1.40
308 309 6.610075 AAACCAACTCTCATGGCATTAATT 57.390 33.333 0.00 0.00 41.89 1.40
309 310 7.716799 AAACCAACTCTCATGGCATTAATTA 57.283 32.000 0.00 0.00 41.89 1.40
310 311 6.949352 ACCAACTCTCATGGCATTAATTAG 57.051 37.500 0.00 0.00 41.89 1.73
311 312 6.662755 ACCAACTCTCATGGCATTAATTAGA 58.337 36.000 0.00 0.00 41.89 2.10
312 313 7.293073 ACCAACTCTCATGGCATTAATTAGAT 58.707 34.615 0.00 0.00 41.89 1.98
313 314 7.446625 ACCAACTCTCATGGCATTAATTAGATC 59.553 37.037 0.00 0.00 41.89 2.75
314 315 7.094463 CCAACTCTCATGGCATTAATTAGATCC 60.094 40.741 0.00 0.00 0.00 3.36
315 316 7.327064 ACTCTCATGGCATTAATTAGATCCT 57.673 36.000 0.00 0.00 0.00 3.24
316 317 8.441311 ACTCTCATGGCATTAATTAGATCCTA 57.559 34.615 0.00 0.00 0.00 2.94
317 318 8.317679 ACTCTCATGGCATTAATTAGATCCTAC 58.682 37.037 0.00 0.00 0.00 3.18
318 319 7.323420 TCTCATGGCATTAATTAGATCCTACG 58.677 38.462 0.00 0.00 0.00 3.51
319 320 7.004555 TCATGGCATTAATTAGATCCTACGT 57.995 36.000 0.00 0.00 0.00 3.57
320 321 8.129496 TCATGGCATTAATTAGATCCTACGTA 57.871 34.615 0.00 0.00 0.00 3.57
321 322 8.033038 TCATGGCATTAATTAGATCCTACGTAC 58.967 37.037 0.00 0.00 0.00 3.67
322 323 7.534723 TGGCATTAATTAGATCCTACGTACT 57.465 36.000 0.00 0.00 0.00 2.73
323 324 7.959175 TGGCATTAATTAGATCCTACGTACTT 58.041 34.615 0.00 0.00 0.00 2.24
324 325 8.426489 TGGCATTAATTAGATCCTACGTACTTT 58.574 33.333 0.00 0.00 0.00 2.66
325 326 9.918630 GGCATTAATTAGATCCTACGTACTTTA 57.081 33.333 0.00 0.00 0.00 1.85
335 336 8.848182 AGATCCTACGTACTTTAGAGTAAATGG 58.152 37.037 0.00 0.00 39.95 3.16
336 337 8.757982 ATCCTACGTACTTTAGAGTAAATGGA 57.242 34.615 0.00 2.35 39.95 3.41
337 338 8.218338 TCCTACGTACTTTAGAGTAAATGGAG 57.782 38.462 0.00 0.00 39.95 3.86
338 339 7.831193 TCCTACGTACTTTAGAGTAAATGGAGT 59.169 37.037 0.00 0.00 39.95 3.85
339 340 7.914346 CCTACGTACTTTAGAGTAAATGGAGTG 59.086 40.741 0.00 0.00 39.95 3.51
340 341 7.224522 ACGTACTTTAGAGTAAATGGAGTGT 57.775 36.000 0.00 0.00 39.95 3.55
341 342 7.664758 ACGTACTTTAGAGTAAATGGAGTGTT 58.335 34.615 0.00 0.00 39.95 3.32
342 343 8.146412 ACGTACTTTAGAGTAAATGGAGTGTTT 58.854 33.333 0.00 0.00 39.95 2.83
343 344 9.630098 CGTACTTTAGAGTAAATGGAGTGTTTA 57.370 33.333 0.00 0.00 39.95 2.01
391 392 3.810310 TTTTTCTTGGTGTGGCGATTT 57.190 38.095 0.00 0.00 0.00 2.17
392 393 4.920640 TTTTTCTTGGTGTGGCGATTTA 57.079 36.364 0.00 0.00 0.00 1.40
393 394 3.907894 TTTCTTGGTGTGGCGATTTAC 57.092 42.857 0.00 0.00 0.00 2.01
394 395 1.816074 TCTTGGTGTGGCGATTTACC 58.184 50.000 0.00 0.00 0.00 2.85
395 396 1.072489 TCTTGGTGTGGCGATTTACCA 59.928 47.619 0.00 0.00 41.18 3.25
396 397 3.727738 TGGTGTGGCGATTTACCAA 57.272 47.368 0.00 0.00 40.05 3.67
397 398 1.529226 TGGTGTGGCGATTTACCAAG 58.471 50.000 0.00 0.00 40.05 3.61
398 399 0.808755 GGTGTGGCGATTTACCAAGG 59.191 55.000 0.00 0.00 39.39 3.61
399 400 0.808755 GTGTGGCGATTTACCAAGGG 59.191 55.000 0.00 0.00 39.39 3.95
400 401 0.963355 TGTGGCGATTTACCAAGGGC 60.963 55.000 0.00 0.00 39.39 5.19
401 402 0.963355 GTGGCGATTTACCAAGGGCA 60.963 55.000 0.00 0.00 39.39 5.36
402 403 0.963355 TGGCGATTTACCAAGGGCAC 60.963 55.000 0.00 0.00 33.12 5.01
403 404 1.427819 GCGATTTACCAAGGGCACG 59.572 57.895 0.00 0.00 0.00 5.34
404 405 1.988834 GCGATTTACCAAGGGCACGG 61.989 60.000 0.00 0.00 0.00 4.94
405 406 0.391927 CGATTTACCAAGGGCACGGA 60.392 55.000 0.00 0.00 0.00 4.69
406 407 1.828979 GATTTACCAAGGGCACGGAA 58.171 50.000 0.00 0.00 0.00 4.30
407 408 2.164338 GATTTACCAAGGGCACGGAAA 58.836 47.619 0.00 0.00 0.00 3.13
408 409 2.296073 TTTACCAAGGGCACGGAAAT 57.704 45.000 0.00 0.00 0.00 2.17
409 410 3.436577 TTTACCAAGGGCACGGAAATA 57.563 42.857 0.00 0.00 0.00 1.40
410 411 2.406596 TACCAAGGGCACGGAAATAC 57.593 50.000 0.00 0.00 0.00 1.89
411 412 0.675522 ACCAAGGGCACGGAAATACG 60.676 55.000 0.00 0.00 40.31 3.06
412 413 1.427819 CAAGGGCACGGAAATACGC 59.572 57.895 0.00 0.00 37.37 4.42
413 414 2.104253 AAGGGCACGGAAATACGCG 61.104 57.895 3.53 3.53 37.37 6.01
414 415 3.569690 GGGCACGGAAATACGCGG 61.570 66.667 12.47 0.00 37.37 6.46
415 416 2.816520 GGCACGGAAATACGCGGT 60.817 61.111 12.47 0.00 37.37 5.68
416 417 1.519013 GGCACGGAAATACGCGGTA 60.519 57.895 12.47 0.25 37.37 4.02
417 418 1.083242 GGCACGGAAATACGCGGTAA 61.083 55.000 12.47 0.00 37.37 2.85
418 419 0.025384 GCACGGAAATACGCGGTAAC 59.975 55.000 12.47 0.00 37.37 2.50
419 420 0.646895 CACGGAAATACGCGGTAACC 59.353 55.000 12.47 6.30 37.37 2.85
420 421 0.246086 ACGGAAATACGCGGTAACCA 59.754 50.000 12.47 0.00 37.37 3.67
421 422 1.134729 ACGGAAATACGCGGTAACCAT 60.135 47.619 12.47 0.00 37.37 3.55
422 423 1.259507 CGGAAATACGCGGTAACCATG 59.740 52.381 12.47 0.00 0.00 3.66
423 424 2.553086 GGAAATACGCGGTAACCATGA 58.447 47.619 12.47 0.00 0.00 3.07
424 425 2.542595 GGAAATACGCGGTAACCATGAG 59.457 50.000 12.47 0.00 0.00 2.90
425 426 3.450578 GAAATACGCGGTAACCATGAGA 58.549 45.455 12.47 0.00 0.00 3.27
426 427 3.530265 AATACGCGGTAACCATGAGAA 57.470 42.857 12.47 0.00 0.00 2.87
427 428 3.530265 ATACGCGGTAACCATGAGAAA 57.470 42.857 12.47 0.00 0.00 2.52
428 429 2.396590 ACGCGGTAACCATGAGAAAT 57.603 45.000 12.47 0.00 0.00 2.17
429 430 2.277084 ACGCGGTAACCATGAGAAATC 58.723 47.619 12.47 0.00 0.00 2.17
430 431 2.093658 ACGCGGTAACCATGAGAAATCT 60.094 45.455 12.47 0.00 0.00 2.40
431 432 2.936498 CGCGGTAACCATGAGAAATCTT 59.064 45.455 0.00 0.00 0.00 2.40
432 433 4.116961 CGCGGTAACCATGAGAAATCTTA 58.883 43.478 0.00 0.00 0.00 2.10
433 434 4.569162 CGCGGTAACCATGAGAAATCTTAA 59.431 41.667 0.00 0.00 0.00 1.85
434 435 5.064198 CGCGGTAACCATGAGAAATCTTAAA 59.936 40.000 0.00 0.00 0.00 1.52
435 436 6.402766 CGCGGTAACCATGAGAAATCTTAAAA 60.403 38.462 0.00 0.00 0.00 1.52
436 437 7.480810 GCGGTAACCATGAGAAATCTTAAAAT 58.519 34.615 0.00 0.00 0.00 1.82
437 438 7.973944 GCGGTAACCATGAGAAATCTTAAAATT 59.026 33.333 0.00 0.00 0.00 1.82
438 439 9.855021 CGGTAACCATGAGAAATCTTAAAATTT 57.145 29.630 0.00 0.00 0.00 1.82
443 444 9.710900 ACCATGAGAAATCTTAAAATTTCAACC 57.289 29.630 14.98 5.93 44.51 3.77
444 445 8.863049 CCATGAGAAATCTTAAAATTTCAACCG 58.137 33.333 14.98 3.05 44.51 4.44
445 446 8.863049 CATGAGAAATCTTAAAATTTCAACCGG 58.137 33.333 14.98 0.00 44.51 5.28
446 447 7.947282 TGAGAAATCTTAAAATTTCAACCGGT 58.053 30.769 14.98 0.00 44.51 5.28
447 448 9.069082 TGAGAAATCTTAAAATTTCAACCGGTA 57.931 29.630 8.00 0.00 44.51 4.02
448 449 9.902196 GAGAAATCTTAAAATTTCAACCGGTAA 57.098 29.630 8.00 0.00 44.51 2.85
449 450 9.687210 AGAAATCTTAAAATTTCAACCGGTAAC 57.313 29.630 8.00 0.00 44.51 2.50
450 451 8.821147 AAATCTTAAAATTTCAACCGGTAACC 57.179 30.769 8.00 0.00 0.00 2.85
451 452 6.956202 TCTTAAAATTTCAACCGGTAACCA 57.044 33.333 8.00 0.00 0.00 3.67
452 453 7.344095 TCTTAAAATTTCAACCGGTAACCAA 57.656 32.000 8.00 0.00 0.00 3.67
453 454 7.779073 TCTTAAAATTTCAACCGGTAACCAAA 58.221 30.769 8.00 5.02 0.00 3.28
454 455 8.255905 TCTTAAAATTTCAACCGGTAACCAAAA 58.744 29.630 8.00 4.87 0.00 2.44
455 456 6.665474 AAAATTTCAACCGGTAACCAAAAC 57.335 33.333 8.00 0.00 0.00 2.43
456 457 5.340439 AATTTCAACCGGTAACCAAAACA 57.660 34.783 8.00 0.00 0.00 2.83
457 458 4.373348 TTTCAACCGGTAACCAAAACAG 57.627 40.909 8.00 0.00 0.00 3.16
458 459 3.002038 TCAACCGGTAACCAAAACAGT 57.998 42.857 8.00 0.00 0.00 3.55
459 460 2.683867 TCAACCGGTAACCAAAACAGTG 59.316 45.455 8.00 0.00 0.00 3.66
463 464 2.882137 CCGGTAACCAAAACAGTGTCAT 59.118 45.455 0.00 0.00 0.00 3.06
480 481 0.249489 CATGGACCCGAAGATCGTCC 60.249 60.000 9.17 9.17 38.40 4.79
594 602 1.219393 CTCTTGGAGGAACCGGAGC 59.781 63.158 9.46 0.00 42.61 4.70
775 809 1.065928 AGTCGAGGCGGCTTTATCG 59.934 57.895 14.76 12.78 39.37 2.92
900 954 0.512952 CGCTGGGTATTAATGCGCTC 59.487 55.000 18.76 11.04 40.15 5.03
901 955 1.873903 CGCTGGGTATTAATGCGCTCT 60.874 52.381 18.76 0.00 40.15 4.09
968 1033 4.390048 TTTTTCTTCTCCGGCCGG 57.610 55.556 39.13 39.13 0.00 6.13
969 1034 1.969589 TTTTTCTTCTCCGGCCGGC 60.970 57.895 39.89 21.18 34.68 6.13
1329 1398 3.372440 ACAGGGCCTAGGATTTTCAAG 57.628 47.619 14.75 0.00 0.00 3.02
1478 1547 1.015868 CGTGTTACCAAAACCACCGT 58.984 50.000 0.00 0.00 0.00 4.83
1538 1616 0.686441 ATGGCTCAGCATGTTGGCAT 60.686 50.000 19.16 12.30 45.15 4.40
1587 1666 3.221771 TGTCAGTTTCATTGTTGGAGGG 58.778 45.455 0.00 0.00 0.00 4.30
1998 2081 5.480422 AGATGATAACACTATGGACGCCATA 59.520 40.000 15.01 15.01 43.19 2.74
2061 2144 3.277142 TCTCTCATAGTGGACGCACTA 57.723 47.619 5.52 5.52 41.30 2.74
2076 2159 4.945246 ACGCACTAGAGAACAGAAGAAAA 58.055 39.130 0.00 0.00 0.00 2.29
2173 2256 2.125106 CTCCTACCCACTTGCCGC 60.125 66.667 0.00 0.00 0.00 6.53
2574 2670 8.300286 TGCTAGATTAGACAGCATATGTAAGAC 58.700 37.037 4.29 0.00 44.17 3.01
2594 2690 0.762082 TGGGCAAACAGGGCAATGAA 60.762 50.000 0.00 0.00 34.52 2.57
2812 3086 8.456471 GGTTATCTAAAATAATTATCCCGTGGC 58.544 37.037 0.00 0.00 0.00 5.01
2875 3149 6.235664 AGGCGTTTCTTTACCTTGAAATCTA 58.764 36.000 0.00 0.00 35.13 1.98
2891 3165 5.951148 TGAAATCTATGGATGTTTCTTGCCA 59.049 36.000 6.68 0.00 31.75 4.92
2944 3218 4.649954 GTCAGTGTGCGCGTGTGC 62.650 66.667 8.43 0.00 37.91 4.57
2954 3228 4.293626 GCGTGTGCGTGTGTGTCC 62.294 66.667 0.00 0.00 40.81 4.02
2955 3229 3.983562 CGTGTGCGTGTGTGTCCG 61.984 66.667 0.00 0.00 0.00 4.79
2956 3230 3.636043 GTGTGCGTGTGTGTCCGG 61.636 66.667 0.00 0.00 0.00 5.14
2957 3231 4.150203 TGTGCGTGTGTGTCCGGT 62.150 61.111 0.00 0.00 0.00 5.28
2958 3232 3.636043 GTGCGTGTGTGTCCGGTG 61.636 66.667 0.00 0.00 0.00 4.94
2961 3235 2.660552 CGTGTGTGTCCGGTGTCC 60.661 66.667 0.00 0.00 0.00 4.02
2985 3259 2.159043 CCTAGATCGTGCTCACCATGTT 60.159 50.000 0.00 0.00 0.00 2.71
3039 3313 8.325787 TCTGTATAAATAGGTTGGAAAAGCTGA 58.674 33.333 0.00 0.00 0.00 4.26
3056 3330 2.805099 GCTGAGCTGAATCCTATTTCCG 59.195 50.000 0.00 0.00 0.00 4.30
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 1.746991 GCTCCCAGTAGCACAAGGC 60.747 63.158 0.00 0.00 42.30 4.35
13 14 4.625800 GCTCCCAGTAGCACAAGG 57.374 61.111 0.00 0.00 42.30 3.61
27 28 3.818787 CAAGGCCGCATGGTGCTC 61.819 66.667 0.00 0.00 42.25 4.26
37 38 4.799824 CCATTTGCGCCAAGGCCG 62.800 66.667 4.18 2.13 37.98 6.13
38 39 3.360956 CTCCATTTGCGCCAAGGCC 62.361 63.158 4.18 0.00 37.98 5.19
39 40 2.182537 CTCCATTTGCGCCAAGGC 59.817 61.111 4.18 0.00 37.85 4.35
40 41 1.978617 ACCTCCATTTGCGCCAAGG 60.979 57.895 4.18 0.67 0.00 3.61
41 42 1.213537 CACCTCCATTTGCGCCAAG 59.786 57.895 4.18 0.00 0.00 3.61
42 43 2.274645 CCACCTCCATTTGCGCCAA 61.275 57.895 4.18 0.00 0.00 4.52
43 44 2.676121 CCACCTCCATTTGCGCCA 60.676 61.111 4.18 0.00 0.00 5.69
44 45 2.361104 TCCACCTCCATTTGCGCC 60.361 61.111 4.18 0.00 0.00 6.53
45 46 0.960364 TTCTCCACCTCCATTTGCGC 60.960 55.000 0.00 0.00 0.00 6.09
46 47 0.804989 GTTCTCCACCTCCATTTGCG 59.195 55.000 0.00 0.00 0.00 4.85
47 48 1.909700 TGTTCTCCACCTCCATTTGC 58.090 50.000 0.00 0.00 0.00 3.68
48 49 3.689347 TCATGTTCTCCACCTCCATTTG 58.311 45.455 0.00 0.00 0.00 2.32
49 50 4.082125 GTTCATGTTCTCCACCTCCATTT 58.918 43.478 0.00 0.00 0.00 2.32
50 51 3.690460 GTTCATGTTCTCCACCTCCATT 58.310 45.455 0.00 0.00 0.00 3.16
51 52 2.355108 CGTTCATGTTCTCCACCTCCAT 60.355 50.000 0.00 0.00 0.00 3.41
52 53 1.001974 CGTTCATGTTCTCCACCTCCA 59.998 52.381 0.00 0.00 0.00 3.86
53 54 1.726853 CGTTCATGTTCTCCACCTCC 58.273 55.000 0.00 0.00 0.00 4.30
54 55 1.079503 GCGTTCATGTTCTCCACCTC 58.920 55.000 0.00 0.00 0.00 3.85
55 56 0.321653 GGCGTTCATGTTCTCCACCT 60.322 55.000 0.00 0.00 0.00 4.00
56 57 0.605319 TGGCGTTCATGTTCTCCACC 60.605 55.000 0.00 0.00 0.00 4.61
57 58 0.517316 GTGGCGTTCATGTTCTCCAC 59.483 55.000 13.03 13.03 37.42 4.02
58 59 0.948623 CGTGGCGTTCATGTTCTCCA 60.949 55.000 0.00 0.00 0.00 3.86
59 60 1.635663 CCGTGGCGTTCATGTTCTCC 61.636 60.000 0.00 0.00 0.00 3.71
60 61 0.949105 ACCGTGGCGTTCATGTTCTC 60.949 55.000 0.00 0.00 0.00 2.87
61 62 1.070786 ACCGTGGCGTTCATGTTCT 59.929 52.632 0.00 0.00 0.00 3.01
62 63 1.206578 CACCGTGGCGTTCATGTTC 59.793 57.895 0.00 0.00 0.00 3.18
63 64 2.903547 GCACCGTGGCGTTCATGTT 61.904 57.895 0.00 0.00 0.00 2.71
64 65 3.353836 GCACCGTGGCGTTCATGT 61.354 61.111 0.00 0.00 0.00 3.21
65 66 4.101790 GGCACCGTGGCGTTCATG 62.102 66.667 9.60 0.00 31.79 3.07
78 79 1.379044 CTTGGTCCATGAGGGGCAC 60.379 63.158 0.00 0.00 45.89 5.01
79 80 2.615465 CCTTGGTCCATGAGGGGCA 61.615 63.158 6.33 0.00 45.89 5.36
80 81 2.155197 AACCTTGGTCCATGAGGGGC 62.155 60.000 13.29 0.00 42.12 5.80
81 82 0.409484 AAACCTTGGTCCATGAGGGG 59.591 55.000 13.29 4.67 37.22 4.79
82 83 1.895131 CAAAACCTTGGTCCATGAGGG 59.105 52.381 13.29 6.81 34.81 4.30
83 84 1.895131 CCAAAACCTTGGTCCATGAGG 59.105 52.381 7.94 7.94 46.25 3.86
93 94 4.320935 CCTCATTCGGTAACCAAAACCTTG 60.321 45.833 0.00 0.00 34.66 3.61
94 95 3.824443 CCTCATTCGGTAACCAAAACCTT 59.176 43.478 0.00 0.00 34.66 3.50
95 96 3.418047 CCTCATTCGGTAACCAAAACCT 58.582 45.455 0.00 0.00 34.66 3.50
96 97 2.094906 GCCTCATTCGGTAACCAAAACC 60.095 50.000 0.00 0.00 0.00 3.27
97 98 2.554893 TGCCTCATTCGGTAACCAAAAC 59.445 45.455 0.00 0.00 0.00 2.43
98 99 2.865079 TGCCTCATTCGGTAACCAAAA 58.135 42.857 0.00 0.00 0.00 2.44
99 100 2.570415 TGCCTCATTCGGTAACCAAA 57.430 45.000 0.00 0.00 0.00 3.28
100 101 2.570415 TTGCCTCATTCGGTAACCAA 57.430 45.000 0.00 0.00 0.00 3.67
101 102 2.799126 ATTGCCTCATTCGGTAACCA 57.201 45.000 0.00 0.00 31.36 3.67
102 103 4.450082 AAAATTGCCTCATTCGGTAACC 57.550 40.909 0.00 0.00 31.36 2.85
103 104 5.337554 GGTAAAATTGCCTCATTCGGTAAC 58.662 41.667 0.00 0.00 31.36 2.50
104 105 4.095185 CGGTAAAATTGCCTCATTCGGTAA 59.905 41.667 0.00 0.00 33.14 2.85
105 106 3.623960 CGGTAAAATTGCCTCATTCGGTA 59.376 43.478 0.00 0.00 0.00 4.02
106 107 2.422127 CGGTAAAATTGCCTCATTCGGT 59.578 45.455 0.00 0.00 0.00 4.69
107 108 2.680841 TCGGTAAAATTGCCTCATTCGG 59.319 45.455 0.00 0.00 0.00 4.30
108 109 3.242739 CCTCGGTAAAATTGCCTCATTCG 60.243 47.826 0.00 0.00 0.00 3.34
109 110 3.066760 CCCTCGGTAAAATTGCCTCATTC 59.933 47.826 0.00 0.00 0.00 2.67
110 111 3.023832 CCCTCGGTAAAATTGCCTCATT 58.976 45.455 0.00 0.00 0.00 2.57
111 112 2.025321 ACCCTCGGTAAAATTGCCTCAT 60.025 45.455 0.00 0.00 32.11 2.90
112 113 1.353022 ACCCTCGGTAAAATTGCCTCA 59.647 47.619 0.00 0.00 32.11 3.86
113 114 1.743394 CACCCTCGGTAAAATTGCCTC 59.257 52.381 0.00 0.00 32.11 4.70
114 115 1.353022 TCACCCTCGGTAAAATTGCCT 59.647 47.619 0.00 0.00 32.11 4.75
115 116 1.471287 GTCACCCTCGGTAAAATTGCC 59.529 52.381 0.00 0.00 32.11 4.52
116 117 2.161609 CAGTCACCCTCGGTAAAATTGC 59.838 50.000 0.00 0.00 32.11 3.56
117 118 2.747446 CCAGTCACCCTCGGTAAAATTG 59.253 50.000 0.00 0.00 32.11 2.32
118 119 2.374170 ACCAGTCACCCTCGGTAAAATT 59.626 45.455 0.00 0.00 32.11 1.82
119 120 1.982958 ACCAGTCACCCTCGGTAAAAT 59.017 47.619 0.00 0.00 32.11 1.82
120 121 1.426751 ACCAGTCACCCTCGGTAAAA 58.573 50.000 0.00 0.00 32.11 1.52
121 122 2.307496 TACCAGTCACCCTCGGTAAA 57.693 50.000 0.00 0.00 32.11 2.01
122 123 2.307496 TTACCAGTCACCCTCGGTAA 57.693 50.000 0.00 0.00 40.74 2.85
123 124 2.307496 TTTACCAGTCACCCTCGGTA 57.693 50.000 0.00 0.00 32.11 4.02
124 125 1.278127 CATTTACCAGTCACCCTCGGT 59.722 52.381 0.00 0.00 35.62 4.69
125 126 1.278127 ACATTTACCAGTCACCCTCGG 59.722 52.381 0.00 0.00 0.00 4.63
126 127 2.346803 CACATTTACCAGTCACCCTCG 58.653 52.381 0.00 0.00 0.00 4.63
127 128 2.039879 ACCACATTTACCAGTCACCCTC 59.960 50.000 0.00 0.00 0.00 4.30
128 129 2.062636 ACCACATTTACCAGTCACCCT 58.937 47.619 0.00 0.00 0.00 4.34
129 130 2.579410 ACCACATTTACCAGTCACCC 57.421 50.000 0.00 0.00 0.00 4.61
169 170 9.046296 ACAAAATTCGCTCGAAATATTCTCTAT 57.954 29.630 8.84 0.00 37.69 1.98
170 171 8.420374 ACAAAATTCGCTCGAAATATTCTCTA 57.580 30.769 8.84 0.00 37.69 2.43
171 172 7.308782 ACAAAATTCGCTCGAAATATTCTCT 57.691 32.000 8.84 0.00 37.69 3.10
172 173 8.328864 ACTACAAAATTCGCTCGAAATATTCTC 58.671 33.333 8.84 0.00 37.69 2.87
173 174 8.197988 ACTACAAAATTCGCTCGAAATATTCT 57.802 30.769 8.84 0.00 37.69 2.40
174 175 8.725046 CAACTACAAAATTCGCTCGAAATATTC 58.275 33.333 8.84 0.00 37.69 1.75
175 176 8.447833 TCAACTACAAAATTCGCTCGAAATATT 58.552 29.630 8.84 2.69 37.69 1.28
176 177 7.970384 TCAACTACAAAATTCGCTCGAAATAT 58.030 30.769 8.84 0.00 37.69 1.28
177 178 7.354025 TCAACTACAAAATTCGCTCGAAATA 57.646 32.000 8.84 0.00 37.69 1.40
178 179 6.236017 TCAACTACAAAATTCGCTCGAAAT 57.764 33.333 8.84 0.00 37.69 2.17
179 180 5.660629 TCAACTACAAAATTCGCTCGAAA 57.339 34.783 8.84 0.00 37.69 3.46
180 181 5.660629 TTCAACTACAAAATTCGCTCGAA 57.339 34.783 7.19 7.19 38.59 3.71
181 182 5.856126 ATTCAACTACAAAATTCGCTCGA 57.144 34.783 0.00 0.00 0.00 4.04
182 183 6.911484 AAATTCAACTACAAAATTCGCTCG 57.089 33.333 0.00 0.00 0.00 5.03
183 184 8.280909 TCAAAATTCAACTACAAAATTCGCTC 57.719 30.769 0.00 0.00 0.00 5.03
184 185 8.641499 TTCAAAATTCAACTACAAAATTCGCT 57.359 26.923 0.00 0.00 0.00 4.93
185 186 9.862585 AATTCAAAATTCAACTACAAAATTCGC 57.137 25.926 0.00 0.00 0.00 4.70
205 206 8.572185 TCCGTTCATTCACTTATTTGAATTCAA 58.428 29.630 16.91 16.91 42.45 2.69
206 207 8.105097 TCCGTTCATTCACTTATTTGAATTCA 57.895 30.769 3.38 3.38 42.45 2.57
211 212 8.547894 CGAATATCCGTTCATTCACTTATTTGA 58.452 33.333 0.00 0.00 31.86 2.69
212 213 8.547894 TCGAATATCCGTTCATTCACTTATTTG 58.452 33.333 0.00 0.00 31.86 2.32
213 214 8.657074 TCGAATATCCGTTCATTCACTTATTT 57.343 30.769 0.00 0.00 31.86 1.40
214 215 8.548721 GTTCGAATATCCGTTCATTCACTTATT 58.451 33.333 0.00 0.00 31.86 1.40
215 216 7.170998 GGTTCGAATATCCGTTCATTCACTTAT 59.829 37.037 0.00 0.00 31.86 1.73
216 217 6.477688 GGTTCGAATATCCGTTCATTCACTTA 59.522 38.462 0.00 0.00 31.86 2.24
217 218 5.293569 GGTTCGAATATCCGTTCATTCACTT 59.706 40.000 0.00 0.00 31.86 3.16
218 219 4.809426 GGTTCGAATATCCGTTCATTCACT 59.191 41.667 0.00 0.00 31.86 3.41
219 220 4.569162 TGGTTCGAATATCCGTTCATTCAC 59.431 41.667 0.00 0.00 31.86 3.18
220 221 4.760878 TGGTTCGAATATCCGTTCATTCA 58.239 39.130 0.00 0.00 31.86 2.57
221 222 5.047847 TCTGGTTCGAATATCCGTTCATTC 58.952 41.667 0.00 0.00 0.00 2.67
222 223 5.018539 TCTGGTTCGAATATCCGTTCATT 57.981 39.130 0.00 0.00 0.00 2.57
223 224 4.341235 TCTCTGGTTCGAATATCCGTTCAT 59.659 41.667 0.00 0.00 0.00 2.57
224 225 3.697542 TCTCTGGTTCGAATATCCGTTCA 59.302 43.478 0.00 0.00 0.00 3.18
225 226 4.043073 GTCTCTGGTTCGAATATCCGTTC 58.957 47.826 0.00 0.00 0.00 3.95
226 227 3.181478 GGTCTCTGGTTCGAATATCCGTT 60.181 47.826 0.00 0.00 0.00 4.44
227 228 2.361438 GGTCTCTGGTTCGAATATCCGT 59.639 50.000 0.00 0.00 0.00 4.69
228 229 2.623889 AGGTCTCTGGTTCGAATATCCG 59.376 50.000 0.00 0.00 0.00 4.18
229 230 3.892588 AGAGGTCTCTGGTTCGAATATCC 59.107 47.826 0.00 0.00 38.75 2.59
230 231 4.580995 TGAGAGGTCTCTGGTTCGAATATC 59.419 45.833 0.00 0.00 43.25 1.63
231 232 4.537751 TGAGAGGTCTCTGGTTCGAATAT 58.462 43.478 0.00 0.00 43.25 1.28
232 233 3.964411 TGAGAGGTCTCTGGTTCGAATA 58.036 45.455 0.00 0.00 43.25 1.75
233 234 2.808919 TGAGAGGTCTCTGGTTCGAAT 58.191 47.619 0.00 0.00 43.25 3.34
234 235 2.287977 TGAGAGGTCTCTGGTTCGAA 57.712 50.000 5.09 0.00 43.25 3.71
235 236 2.287977 TTGAGAGGTCTCTGGTTCGA 57.712 50.000 5.09 0.00 43.25 3.71
236 237 3.060602 GTTTTGAGAGGTCTCTGGTTCG 58.939 50.000 5.09 0.00 43.25 3.95
237 238 4.061596 CTGTTTTGAGAGGTCTCTGGTTC 58.938 47.826 5.09 0.00 43.25 3.62
238 239 3.181450 CCTGTTTTGAGAGGTCTCTGGTT 60.181 47.826 5.09 0.00 43.25 3.67
239 240 2.370189 CCTGTTTTGAGAGGTCTCTGGT 59.630 50.000 5.09 0.00 43.25 4.00
240 241 2.634940 TCCTGTTTTGAGAGGTCTCTGG 59.365 50.000 5.09 0.00 43.25 3.86
241 242 4.061596 GTTCCTGTTTTGAGAGGTCTCTG 58.938 47.826 5.09 0.00 43.25 3.35
242 243 3.970640 AGTTCCTGTTTTGAGAGGTCTCT 59.029 43.478 8.44 0.00 43.25 3.10
243 244 4.344359 AGTTCCTGTTTTGAGAGGTCTC 57.656 45.455 0.00 0.00 43.15 3.36
244 245 4.284746 CCTAGTTCCTGTTTTGAGAGGTCT 59.715 45.833 0.00 0.00 0.00 3.85
245 246 4.040584 ACCTAGTTCCTGTTTTGAGAGGTC 59.959 45.833 0.00 0.00 28.54 3.85
246 247 3.974642 ACCTAGTTCCTGTTTTGAGAGGT 59.025 43.478 0.00 0.00 0.00 3.85
247 248 4.625607 ACCTAGTTCCTGTTTTGAGAGG 57.374 45.455 0.00 0.00 0.00 3.69
248 249 4.214332 GCAACCTAGTTCCTGTTTTGAGAG 59.786 45.833 0.00 0.00 0.00 3.20
249 250 4.134563 GCAACCTAGTTCCTGTTTTGAGA 58.865 43.478 0.00 0.00 0.00 3.27
250 251 4.137543 AGCAACCTAGTTCCTGTTTTGAG 58.862 43.478 0.00 0.00 0.00 3.02
251 252 4.164843 AGCAACCTAGTTCCTGTTTTGA 57.835 40.909 0.00 0.00 0.00 2.69
252 253 4.215613 GGTAGCAACCTAGTTCCTGTTTTG 59.784 45.833 0.00 0.00 43.08 2.44
253 254 4.141344 TGGTAGCAACCTAGTTCCTGTTTT 60.141 41.667 0.00 0.00 46.91 2.43
254 255 3.393278 TGGTAGCAACCTAGTTCCTGTTT 59.607 43.478 0.00 0.00 46.91 2.83
255 256 2.976882 TGGTAGCAACCTAGTTCCTGTT 59.023 45.455 0.00 0.00 46.91 3.16
256 257 2.616524 TGGTAGCAACCTAGTTCCTGT 58.383 47.619 0.00 0.00 46.91 4.00
257 258 3.244422 TGTTGGTAGCAACCTAGTTCCTG 60.244 47.826 29.46 0.00 46.91 3.86
258 259 2.976882 TGTTGGTAGCAACCTAGTTCCT 59.023 45.455 29.46 0.00 46.91 3.36
259 260 3.072211 GTGTTGGTAGCAACCTAGTTCC 58.928 50.000 29.46 7.82 46.91 3.62
260 261 2.735134 CGTGTTGGTAGCAACCTAGTTC 59.265 50.000 29.46 14.40 46.91 3.01
261 262 2.762745 CGTGTTGGTAGCAACCTAGTT 58.237 47.619 29.46 0.00 46.91 2.24
262 263 1.607251 GCGTGTTGGTAGCAACCTAGT 60.607 52.381 29.46 0.00 46.91 2.57
263 264 1.076332 GCGTGTTGGTAGCAACCTAG 58.924 55.000 29.46 21.74 46.91 3.02
264 265 0.320946 GGCGTGTTGGTAGCAACCTA 60.321 55.000 29.46 13.49 46.91 3.08
265 266 1.599797 GGCGTGTTGGTAGCAACCT 60.600 57.895 29.46 0.00 46.91 3.50
266 267 1.448922 TTGGCGTGTTGGTAGCAACC 61.449 55.000 29.46 20.70 46.98 3.77
267 268 0.382515 TTTGGCGTGTTGGTAGCAAC 59.617 50.000 26.90 26.90 35.75 4.17
268 269 1.103803 TTTTGGCGTGTTGGTAGCAA 58.896 45.000 2.54 2.54 0.00 3.91
269 270 0.382515 GTTTTGGCGTGTTGGTAGCA 59.617 50.000 0.00 0.00 0.00 3.49
270 271 0.318360 GGTTTTGGCGTGTTGGTAGC 60.318 55.000 0.00 0.00 0.00 3.58
271 272 1.025812 TGGTTTTGGCGTGTTGGTAG 58.974 50.000 0.00 0.00 0.00 3.18
272 273 1.134560 GTTGGTTTTGGCGTGTTGGTA 59.865 47.619 0.00 0.00 0.00 3.25
273 274 0.108567 GTTGGTTTTGGCGTGTTGGT 60.109 50.000 0.00 0.00 0.00 3.67
274 275 0.174617 AGTTGGTTTTGGCGTGTTGG 59.825 50.000 0.00 0.00 0.00 3.77
275 276 1.134175 AGAGTTGGTTTTGGCGTGTTG 59.866 47.619 0.00 0.00 0.00 3.33
276 277 1.404035 GAGAGTTGGTTTTGGCGTGTT 59.596 47.619 0.00 0.00 0.00 3.32
277 278 1.021968 GAGAGTTGGTTTTGGCGTGT 58.978 50.000 0.00 0.00 0.00 4.49
278 279 1.021202 TGAGAGTTGGTTTTGGCGTG 58.979 50.000 0.00 0.00 0.00 5.34
279 280 1.608590 CATGAGAGTTGGTTTTGGCGT 59.391 47.619 0.00 0.00 0.00 5.68
280 281 1.068333 CCATGAGAGTTGGTTTTGGCG 60.068 52.381 0.00 0.00 0.00 5.69
281 282 1.337167 GCCATGAGAGTTGGTTTTGGC 60.337 52.381 0.00 0.00 41.09 4.52
282 283 1.962807 TGCCATGAGAGTTGGTTTTGG 59.037 47.619 0.00 0.00 36.57 3.28
283 284 3.947910 ATGCCATGAGAGTTGGTTTTG 57.052 42.857 0.00 0.00 36.57 2.44
284 285 6.610075 ATTAATGCCATGAGAGTTGGTTTT 57.390 33.333 0.00 0.00 36.57 2.43
285 286 6.610075 AATTAATGCCATGAGAGTTGGTTT 57.390 33.333 0.00 0.00 36.57 3.27
286 287 7.118723 TCTAATTAATGCCATGAGAGTTGGTT 58.881 34.615 0.00 0.00 36.57 3.67
287 288 6.662755 TCTAATTAATGCCATGAGAGTTGGT 58.337 36.000 0.00 0.00 36.57 3.67
288 289 7.094463 GGATCTAATTAATGCCATGAGAGTTGG 60.094 40.741 0.00 0.00 37.31 3.77
289 290 7.664731 AGGATCTAATTAATGCCATGAGAGTTG 59.335 37.037 0.00 0.00 0.00 3.16
290 291 7.753630 AGGATCTAATTAATGCCATGAGAGTT 58.246 34.615 0.00 0.00 0.00 3.01
291 292 7.327064 AGGATCTAATTAATGCCATGAGAGT 57.673 36.000 0.00 0.00 0.00 3.24
292 293 7.490725 CGTAGGATCTAATTAATGCCATGAGAG 59.509 40.741 0.00 0.00 0.00 3.20
293 294 7.039011 ACGTAGGATCTAATTAATGCCATGAGA 60.039 37.037 0.00 0.00 0.00 3.27
294 295 7.099764 ACGTAGGATCTAATTAATGCCATGAG 58.900 38.462 0.00 0.00 0.00 2.90
295 296 7.004555 ACGTAGGATCTAATTAATGCCATGA 57.995 36.000 0.00 0.00 0.00 3.07
296 297 8.035394 AGTACGTAGGATCTAATTAATGCCATG 58.965 37.037 0.00 0.00 0.00 3.66
297 298 8.135382 AGTACGTAGGATCTAATTAATGCCAT 57.865 34.615 0.00 0.00 0.00 4.40
298 299 7.534723 AGTACGTAGGATCTAATTAATGCCA 57.465 36.000 0.00 0.00 0.00 4.92
299 300 8.828688 AAAGTACGTAGGATCTAATTAATGCC 57.171 34.615 0.00 0.00 0.00 4.40
309 310 8.848182 CCATTTACTCTAAAGTACGTAGGATCT 58.152 37.037 0.00 0.00 37.72 2.75
310 311 8.844244 TCCATTTACTCTAAAGTACGTAGGATC 58.156 37.037 0.00 0.00 37.72 3.36
311 312 8.757982 TCCATTTACTCTAAAGTACGTAGGAT 57.242 34.615 0.00 0.00 37.72 3.24
312 313 7.831193 ACTCCATTTACTCTAAAGTACGTAGGA 59.169 37.037 0.00 0.00 37.72 2.94
313 314 7.914346 CACTCCATTTACTCTAAAGTACGTAGG 59.086 40.741 0.00 0.00 37.72 3.18
314 315 8.457261 ACACTCCATTTACTCTAAAGTACGTAG 58.543 37.037 0.00 1.34 37.72 3.51
315 316 8.340618 ACACTCCATTTACTCTAAAGTACGTA 57.659 34.615 0.00 0.00 37.72 3.57
316 317 7.224522 ACACTCCATTTACTCTAAAGTACGT 57.775 36.000 0.00 0.00 37.72 3.57
317 318 8.530269 AAACACTCCATTTACTCTAAAGTACG 57.470 34.615 0.00 0.00 37.72 3.67
371 372 3.810310 AAATCGCCACACCAAGAAAAA 57.190 38.095 0.00 0.00 0.00 1.94
372 373 3.004944 GGTAAATCGCCACACCAAGAAAA 59.995 43.478 0.00 0.00 0.00 2.29
373 374 2.554893 GGTAAATCGCCACACCAAGAAA 59.445 45.455 0.00 0.00 0.00 2.52
374 375 2.156098 GGTAAATCGCCACACCAAGAA 58.844 47.619 0.00 0.00 0.00 2.52
375 376 1.072489 TGGTAAATCGCCACACCAAGA 59.928 47.619 0.00 0.00 38.10 3.02
376 377 1.529226 TGGTAAATCGCCACACCAAG 58.471 50.000 0.00 0.00 38.10 3.61
377 378 1.883275 CTTGGTAAATCGCCACACCAA 59.117 47.619 5.05 5.05 46.18 3.67
378 379 1.529226 CTTGGTAAATCGCCACACCA 58.471 50.000 0.00 0.00 39.27 4.17
379 380 0.808755 CCTTGGTAAATCGCCACACC 59.191 55.000 0.00 0.00 35.46 4.16
380 381 0.808755 CCCTTGGTAAATCGCCACAC 59.191 55.000 0.00 0.00 35.46 3.82
381 382 0.963355 GCCCTTGGTAAATCGCCACA 60.963 55.000 0.00 0.00 35.46 4.17
382 383 0.963355 TGCCCTTGGTAAATCGCCAC 60.963 55.000 0.00 0.00 35.46 5.01
383 384 0.963355 GTGCCCTTGGTAAATCGCCA 60.963 55.000 0.00 0.00 0.00 5.69
384 385 1.807226 GTGCCCTTGGTAAATCGCC 59.193 57.895 0.00 0.00 0.00 5.54
385 386 1.427819 CGTGCCCTTGGTAAATCGC 59.572 57.895 0.00 0.00 0.00 4.58
386 387 0.391927 TCCGTGCCCTTGGTAAATCG 60.392 55.000 0.00 0.00 0.00 3.34
387 388 1.828979 TTCCGTGCCCTTGGTAAATC 58.171 50.000 0.00 0.00 0.00 2.17
388 389 2.296073 TTTCCGTGCCCTTGGTAAAT 57.704 45.000 0.00 0.00 0.00 1.40
389 390 2.296073 ATTTCCGTGCCCTTGGTAAA 57.704 45.000 0.00 0.00 0.00 2.01
390 391 2.713877 GTATTTCCGTGCCCTTGGTAA 58.286 47.619 0.00 0.00 0.00 2.85
391 392 1.405797 CGTATTTCCGTGCCCTTGGTA 60.406 52.381 0.00 0.00 0.00 3.25
392 393 0.675522 CGTATTTCCGTGCCCTTGGT 60.676 55.000 0.00 0.00 0.00 3.67
393 394 1.988834 GCGTATTTCCGTGCCCTTGG 61.989 60.000 0.00 0.00 0.00 3.61
394 395 1.427819 GCGTATTTCCGTGCCCTTG 59.572 57.895 0.00 0.00 0.00 3.61
395 396 2.104253 CGCGTATTTCCGTGCCCTT 61.104 57.895 0.00 0.00 0.00 3.95
396 397 2.510691 CGCGTATTTCCGTGCCCT 60.511 61.111 0.00 0.00 0.00 5.19
397 398 2.904470 TACCGCGTATTTCCGTGCCC 62.904 60.000 4.92 0.00 37.03 5.36
398 399 1.083242 TTACCGCGTATTTCCGTGCC 61.083 55.000 4.92 0.00 37.03 5.01
399 400 0.025384 GTTACCGCGTATTTCCGTGC 59.975 55.000 4.92 0.00 37.03 5.34
400 401 0.646895 GGTTACCGCGTATTTCCGTG 59.353 55.000 4.92 0.00 38.04 4.94
401 402 0.246086 TGGTTACCGCGTATTTCCGT 59.754 50.000 4.92 0.00 0.00 4.69
402 403 1.259507 CATGGTTACCGCGTATTTCCG 59.740 52.381 4.92 0.00 0.00 4.30
403 404 2.542595 CTCATGGTTACCGCGTATTTCC 59.457 50.000 4.92 1.35 0.00 3.13
404 405 3.450578 TCTCATGGTTACCGCGTATTTC 58.549 45.455 4.92 0.00 0.00 2.17
405 406 3.530265 TCTCATGGTTACCGCGTATTT 57.470 42.857 4.92 0.00 0.00 1.40
406 407 3.530265 TTCTCATGGTTACCGCGTATT 57.470 42.857 4.92 0.00 0.00 1.89
407 408 3.530265 TTTCTCATGGTTACCGCGTAT 57.470 42.857 4.92 0.00 0.00 3.06
408 409 3.131577 AGATTTCTCATGGTTACCGCGTA 59.868 43.478 4.92 0.00 0.00 4.42
409 410 2.093658 AGATTTCTCATGGTTACCGCGT 60.094 45.455 4.92 0.00 0.00 6.01
410 411 2.550978 AGATTTCTCATGGTTACCGCG 58.449 47.619 0.00 0.00 0.00 6.46
411 412 6.431198 TTTAAGATTTCTCATGGTTACCGC 57.569 37.500 0.00 0.00 0.00 5.68
412 413 9.855021 AAATTTTAAGATTTCTCATGGTTACCG 57.145 29.630 0.00 0.00 0.00 4.02
417 418 9.710900 GGTTGAAATTTTAAGATTTCTCATGGT 57.289 29.630 24.09 0.00 43.28 3.55
418 419 8.863049 CGGTTGAAATTTTAAGATTTCTCATGG 58.137 33.333 24.09 11.54 43.28 3.66
419 420 8.863049 CCGGTTGAAATTTTAAGATTTCTCATG 58.137 33.333 24.09 14.99 43.28 3.07
420 421 8.585018 ACCGGTTGAAATTTTAAGATTTCTCAT 58.415 29.630 24.09 8.31 43.28 2.90
421 422 7.947282 ACCGGTTGAAATTTTAAGATTTCTCA 58.053 30.769 24.09 13.21 43.28 3.27
422 423 9.902196 TTACCGGTTGAAATTTTAAGATTTCTC 57.098 29.630 24.09 18.29 43.28 2.87
423 424 9.687210 GTTACCGGTTGAAATTTTAAGATTTCT 57.313 29.630 24.09 11.27 43.28 2.52
424 425 8.918658 GGTTACCGGTTGAAATTTTAAGATTTC 58.081 33.333 15.04 19.55 43.22 2.17
425 426 8.422566 TGGTTACCGGTTGAAATTTTAAGATTT 58.577 29.630 15.04 3.75 32.16 2.17
426 427 7.953752 TGGTTACCGGTTGAAATTTTAAGATT 58.046 30.769 15.04 0.00 0.00 2.40
427 428 7.527568 TGGTTACCGGTTGAAATTTTAAGAT 57.472 32.000 15.04 0.00 0.00 2.40
428 429 6.956202 TGGTTACCGGTTGAAATTTTAAGA 57.044 33.333 15.04 0.00 0.00 2.10
429 430 8.329583 GTTTTGGTTACCGGTTGAAATTTTAAG 58.670 33.333 15.04 0.00 0.00 1.85
430 431 7.820872 TGTTTTGGTTACCGGTTGAAATTTTAA 59.179 29.630 15.04 0.00 0.00 1.52
431 432 7.325694 TGTTTTGGTTACCGGTTGAAATTTTA 58.674 30.769 15.04 0.00 0.00 1.52
432 433 6.171213 TGTTTTGGTTACCGGTTGAAATTTT 58.829 32.000 15.04 0.00 0.00 1.82
433 434 5.731591 TGTTTTGGTTACCGGTTGAAATTT 58.268 33.333 15.04 0.00 0.00 1.82
434 435 5.105269 ACTGTTTTGGTTACCGGTTGAAATT 60.105 36.000 15.04 0.00 0.00 1.82
435 436 4.403113 ACTGTTTTGGTTACCGGTTGAAAT 59.597 37.500 15.04 0.00 0.00 2.17
436 437 3.762823 ACTGTTTTGGTTACCGGTTGAAA 59.237 39.130 15.04 0.00 0.00 2.69
437 438 3.128938 CACTGTTTTGGTTACCGGTTGAA 59.871 43.478 15.04 0.00 0.00 2.69
438 439 2.683867 CACTGTTTTGGTTACCGGTTGA 59.316 45.455 15.04 0.00 0.00 3.18
439 440 2.424246 ACACTGTTTTGGTTACCGGTTG 59.576 45.455 15.04 2.00 0.00 3.77
440 441 2.684374 GACACTGTTTTGGTTACCGGTT 59.316 45.455 15.04 0.00 0.00 4.44
441 442 2.291365 GACACTGTTTTGGTTACCGGT 58.709 47.619 13.98 13.98 0.00 5.28
442 443 2.290464 TGACACTGTTTTGGTTACCGG 58.710 47.619 0.00 0.00 0.00 5.28
443 444 3.304391 CCATGACACTGTTTTGGTTACCG 60.304 47.826 0.00 0.00 0.00 4.02
444 445 3.886505 TCCATGACACTGTTTTGGTTACC 59.113 43.478 0.00 0.00 0.00 2.85
445 446 4.261447 GGTCCATGACACTGTTTTGGTTAC 60.261 45.833 0.00 4.13 33.68 2.50
446 447 3.886505 GGTCCATGACACTGTTTTGGTTA 59.113 43.478 0.00 0.00 33.68 2.85
447 448 2.693074 GGTCCATGACACTGTTTTGGTT 59.307 45.455 0.00 0.00 33.68 3.67
448 449 2.306847 GGTCCATGACACTGTTTTGGT 58.693 47.619 0.00 0.00 33.68 3.67
449 450 1.613437 GGGTCCATGACACTGTTTTGG 59.387 52.381 0.00 5.38 32.50 3.28
450 451 1.266718 CGGGTCCATGACACTGTTTTG 59.733 52.381 0.00 0.00 33.17 2.44
451 452 1.142060 TCGGGTCCATGACACTGTTTT 59.858 47.619 0.00 0.00 33.17 2.43
452 453 0.762418 TCGGGTCCATGACACTGTTT 59.238 50.000 0.00 0.00 33.17 2.83
453 454 0.762418 TTCGGGTCCATGACACTGTT 59.238 50.000 0.00 0.00 33.17 3.16
454 455 0.321671 CTTCGGGTCCATGACACTGT 59.678 55.000 0.00 0.00 33.17 3.55
455 456 0.608130 TCTTCGGGTCCATGACACTG 59.392 55.000 0.00 0.00 33.17 3.66
456 457 1.482593 GATCTTCGGGTCCATGACACT 59.517 52.381 0.00 0.00 33.17 3.55
457 458 1.802880 CGATCTTCGGGTCCATGACAC 60.803 57.143 0.00 0.00 36.00 3.67
458 459 0.459899 CGATCTTCGGGTCCATGACA 59.540 55.000 0.00 0.00 36.00 3.58
459 460 0.460311 ACGATCTTCGGGTCCATGAC 59.540 55.000 0.00 0.00 45.59 3.06
480 481 2.915463 CGAGTACCGCTTAGTTCTTGTG 59.085 50.000 0.00 0.00 0.00 3.33
594 602 8.827177 TTAACTCTAATAACAGTGTCCTTGTG 57.173 34.615 0.00 0.00 0.00 3.33
810 844 3.260380 CCTTCAGAACTCAGATGGTGACT 59.740 47.826 0.00 0.00 0.00 3.41
900 954 7.967303 GCTAATCTGATGGTTTGAAAGAAGAAG 59.033 37.037 0.00 0.00 0.00 2.85
901 955 7.448161 TGCTAATCTGATGGTTTGAAAGAAGAA 59.552 33.333 0.00 0.00 0.00 2.52
969 1034 3.952628 GACCAGGAGGAAACGGCGG 62.953 68.421 13.24 0.00 38.69 6.13
1329 1398 0.037605 ACCGACTGGAATCGTTGGAC 60.038 55.000 3.57 0.00 40.59 4.02
1478 1547 3.630298 TTGGGCGGCGATTTGGCTA 62.630 57.895 12.98 0.00 42.02 3.93
1538 1616 1.546323 CCTCCTTTTCTTCCAGCAGCA 60.546 52.381 0.00 0.00 0.00 4.41
1587 1666 1.869767 CTATGCGCTTCAATGGTCTCC 59.130 52.381 9.73 0.00 0.00 3.71
1876 1958 1.733912 CACGGTGTCCACATTCAGATG 59.266 52.381 0.00 0.00 39.25 2.90
1998 2081 1.531602 GAAGCCTTGGGTTGCCACT 60.532 57.895 8.95 0.00 0.00 4.00
2076 2159 1.734465 GCTGCTCATGCTTTACGAAGT 59.266 47.619 0.00 0.00 42.35 3.01
2173 2256 2.431954 AATTGAGCTGACCATCCCTG 57.568 50.000 0.00 0.00 0.00 4.45
2233 2318 5.178096 TCACACCATTCACATTACCTGAT 57.822 39.130 0.00 0.00 0.00 2.90
2237 2322 5.643379 ACATTCACACCATTCACATTACC 57.357 39.130 0.00 0.00 0.00 2.85
2240 2325 5.047802 GGAGAACATTCACACCATTCACATT 60.048 40.000 0.00 0.00 0.00 2.71
2315 2406 2.159014 TGTTACACGGTTGCAGAGAAGT 60.159 45.455 0.00 0.00 0.00 3.01
2527 2623 4.760715 GCACAAGATCATGCATTCTATCCT 59.239 41.667 0.00 0.00 41.65 3.24
2528 2624 4.760715 AGCACAAGATCATGCATTCTATCC 59.239 41.667 16.16 0.00 44.59 2.59
2529 2625 5.943706 AGCACAAGATCATGCATTCTATC 57.056 39.130 16.16 0.64 44.59 2.08
2574 2670 1.186917 TCATTGCCCTGTTTGCCCAG 61.187 55.000 0.00 0.00 0.00 4.45
2594 2690 7.459125 TCCCTGAGCTCAATGTAATAATCCTAT 59.541 37.037 18.85 0.00 0.00 2.57
2812 3086 0.810031 CCGAATGGCTTGGAGGTACG 60.810 60.000 0.00 0.00 0.00 3.67
2875 3149 3.003394 TCGATGGCAAGAAACATCCAT 57.997 42.857 0.00 0.00 40.19 3.41
2891 3165 3.955471 TCCTTCTTTGGCAGATTTCGAT 58.045 40.909 0.00 0.00 0.00 3.59
2944 3218 2.660552 GGACACCGGACACACACG 60.661 66.667 9.46 0.00 0.00 4.49
2945 3219 2.280592 GGGACACCGGACACACAC 60.281 66.667 9.46 0.00 0.00 3.82
2946 3220 3.552384 GGGGACACCGGACACACA 61.552 66.667 9.46 0.00 37.78 3.72
2947 3221 4.324991 GGGGGACACCGGACACAC 62.325 72.222 9.46 0.00 41.60 3.82
2961 3235 1.742768 GTGAGCACGATCTAGGGGG 59.257 63.158 0.00 0.00 0.00 5.40
2985 3259 2.621055 AGCGGCAACAACAGAAATTACA 59.379 40.909 1.45 0.00 0.00 2.41
3056 3330 5.408604 TCACTTTCTCGTTATTCCTGAAAGC 59.591 40.000 11.98 0.00 44.10 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.